AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>029892
MGISLNPNSQSLNGSHHHTHKVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHI
LTIAGAISGCAAASSDSSRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREE
DGVVILKLAGGLCVLIFCLEWVVLTLAFFLKYYAYVEGGNGTPAVRRSAKVSQEEDLKDW
PWPFQV

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G16250 AT5G16250 AT5G16250	protein from Arabidopsis thaliana	6.0e-64
BLAST match view associations BLAST with AT3G02640 AT3G02640 AT3G02640	protein from Arabidopsis thaliana	8.1e-60
BLAST match view associations BLAST with AT5G36710 AT5G36710 AT5G36710	protein from Arabidopsis thaliana	3.7e-48
BLAST match view associations BLAST with AT5G36800 AT5G36800 AT5G36800	protein from Arabidopsis thaliana	3.7e-48

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029892
        (186 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2181447 - symbol:AT5G16250 "AT5G16250" species...   652  6.0e-64   1
TAIR|locus:2076849 - symbol:AT3G02640 "AT3G02640" species...   613  8.1e-60   1
TAIR|locus:2147376 - symbol:AT5G36710 "AT5G36710" species...   503  3.7e-48   1
TAIR|locus:2832155 - symbol:AT5G36800 "AT5G36800" species...   503  3.7e-48   1


>TAIR|locus:2181447 [details] [associations]
            symbol:AT5G16250 "AT5G16250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 EMBL:AL391148 ProtClustDB:CLSN2686142
            EMBL:AK227420 IPI:IPI00548346 PIR:T51495 RefSeq:NP_197129.1
            UniGene:At.22180 STRING:Q9LF03 PRIDE:Q9LF03
            EnsemblPlants:AT5G16250.1 GeneID:831485 KEGG:ath:AT5G16250
            TAIR:At5g16250 InParanoid:Q9LF03 OMA:ESHYHTH PhylomeDB:Q9LF03
            Genevestigator:Q9LF03 Uniprot:Q9LF03
        Length = 183

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 121/179 (67%), Positives = 139/179 (77%)

Query:     8 NSQSLNGSHHHTHKVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHILTXXXXX 67
             +S  +  SH+HTHK+FL+ NYILLGAASSCIFLTLSLRL+PS+CGF  ILLH  T     
Sbjct:     6 SSSPVEESHYHTHKIFLFSNYILLGAASSCIFLTLSLRLIPSICGFLLILLHATTIAAAV 65

Query:    68 XXXXXXXXXXXRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVILK 127
                        RWY AHMVATVLTAIFQGSVSVL+FT TS FLG LKSYVREED  VILK
Sbjct:    66 SGCAAASCGRNRWYAAHMVATVLTAIFQGSVSVLIFTNTSKFLGSLKSYVREEDAAVILK 125

Query:   128 LAGGLCVLIFCLEWVVLTLAFFLKYYAYVEGGNGTPAVRRSAKVSQEEDLKDWPWPFQV 186
             L GGLC++IFCL+W+VL  AFFLKYYAYV+GG+G  A++R+ KV  EE+ KDWPWPFQV
Sbjct:   126 LGGGLCIVIFCLDWIVLVCAFFLKYYAYVDGGDGV-AMKRTGKVQSEENPKDWPWPFQV 183


>TAIR|locus:2076849 [details] [associations]
            symbol:AT3G02640 "AT3G02640" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016572 "histone phosphorylation" evidence=RCA]
            EMBL:AC021640 EMBL:CP002686 GenomeReviews:BA000014_GR
            UniGene:At.18819 ProtClustDB:CLSN2686142 EMBL:AY062624
            EMBL:AY088259 EMBL:AY128811 IPI:IPI00539529 RefSeq:NP_566178.1
            STRING:Q9M878 EnsemblPlants:AT3G02640.1 GeneID:821289
            KEGG:ath:AT3G02640 TAIR:At3g02640 eggNOG:NOG297727
            HOGENOM:HOG000238564 InParanoid:Q9M878 OMA:GSHTHRA PhylomeDB:Q9M878
            ArrayExpress:Q9M878 Genevestigator:Q9M878 Uniprot:Q9M878
        Length = 185

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 117/186 (62%), Positives = 140/186 (75%)

Query:     1 MGISLNPNSQSLNGSHHHTHKVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHI 60
             MG+   P  +S+  SH++THK+FL  NY+LLGA+SSCIFLTLSLRL+PS+CGFF ILLH 
Sbjct:     1 MGLIPQPQ-ESIQESHYYTHKLFLTANYVLLGASSSCIFLTLSLRLIPSLCGFFLILLHA 59

Query:    61 LTXXXXXXXXXXXXXXXXRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREE 120
              T                RWY AHM+ATVLTAIFQGSVSVL+FT TS+FL  L SYVRE+
Sbjct:    60 TTIAAAVSGCAAASYGKNRWYAAHMIATVLTAIFQGSVSVLIFTNTSNFLESLNSYVREK 119

Query:   121 DGVVILKLAGGLCVLIFCLEWVVLTLAFFLKYYAYVEGGNGTPAVRRSAKVSQEEDLKDW 180
             +  +ILKLAGGLCV+IFCLEW+VL LAFFLKYYAYV+G N   A++R+ KV  EE LK+ 
Sbjct:   120 EASMILKLAGGLCVVIFCLEWIVLVLAFFLKYYAYVDGDNNGVAMKRTGKVQSEETLKNS 179

Query:   181 PWPFQV 186
             PW FQV
Sbjct:   180 PWAFQV 185


>TAIR|locus:2147376 [details] [associations]
            symbol:AT5G36710 "AT5G36710" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 EMBL:BT006402 EMBL:AK220601
            EMBL:AK227697 IPI:IPI00530414 RefSeq:NP_198486.2 RefSeq:NP_198496.1
            UniGene:At.30536 UniGene:At.71644 EnsemblPlants:AT5G36710.1
            EnsemblPlants:AT5G36800.1 GeneID:833636 GeneID:833647
            KEGG:ath:AT5G36710 KEGG:ath:AT5G36800 eggNOG:NOG288108 OMA:KGNTHNI
            ProtClustDB:CLSN2686142 Genevestigator:Q84MC5 Uniprot:Q84MC5
        Length = 183

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 108/184 (58%), Positives = 127/184 (69%)

Query:    12 LNGSHHHTHKVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHILTXXXXXX--- 68
             ++ S  +TH +FL CNYILLG+ASSCIFLT+SLRL PS+ G   I L+ LT         
Sbjct:     3 MSKSKGNTHNIFLLCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCS 62

Query:    69 --XXXXXXXXXXRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVIL 126
                         R YG+HMVATVLTAIFQG+VSVL+FTRT DFL  LKSYVREEDG VIL
Sbjct:    63 IFASSTSATASDRLYGSHMVATVLTAIFQGAVSVLIFTRTGDFLRFLKSYVREEDGEVIL 122

Query:   127 KLAGGLCVLIFCLEWVVLTLAFFLKYYAYVEGG---NGTPAVRRSAKVSQEEDLKDWP-W 182
             KL+GGLCVL+FCLEW+VL LAF LKY  Y++     +    VRR     QEEDLKDWP +
Sbjct:   123 KLSGGLCVLMFCLEWIVLVLAFLLKYSDYLDESVVDDDDFKVRR-----QEEDLKDWPSY 177

Query:   183 PFQV 186
             PFQ+
Sbjct:   178 PFQL 181


>TAIR|locus:2832155 [details] [associations]
            symbol:AT5G36800 "AT5G36800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] EMBL:CP002688 EMBL:BT006402
            EMBL:AK220601 EMBL:AK227697 IPI:IPI00530414 RefSeq:NP_198486.2
            RefSeq:NP_198496.1 UniGene:At.30536 UniGene:At.71644
            EnsemblPlants:AT5G36710.1 EnsemblPlants:AT5G36800.1 GeneID:833636
            GeneID:833647 KEGG:ath:AT5G36710 KEGG:ath:AT5G36800
            eggNOG:NOG288108 OMA:KGNTHNI ProtClustDB:CLSN2686142
            Genevestigator:Q84MC5 Uniprot:Q84MC5
        Length = 183

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 108/184 (58%), Positives = 127/184 (69%)

Query:    12 LNGSHHHTHKVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHILTXXXXXX--- 68
             ++ S  +TH +FL CNYILLG+ASSCIFLT+SLRL PS+ G   I L+ LT         
Sbjct:     3 MSKSKGNTHNIFLLCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCS 62

Query:    69 --XXXXXXXXXXRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVIL 126
                         R YG+HMVATVLTAIFQG+VSVL+FTRT DFL  LKSYVREEDG VIL
Sbjct:    63 IFASSTSATASDRLYGSHMVATVLTAIFQGAVSVLIFTRTGDFLRFLKSYVREEDGEVIL 122

Query:   127 KLAGGLCVLIFCLEWVVLTLAFFLKYYAYVEGG---NGTPAVRRSAKVSQEEDLKDWP-W 182
             KL+GGLCVL+FCLEW+VL LAF LKY  Y++     +    VRR     QEEDLKDWP +
Sbjct:   123 KLSGGLCVLMFCLEWIVLVLAFLLKYSDYLDESVVDDDDFKVRR-----QEEDLKDWPSY 177

Query:   183 PFQV 186
             PFQ+
Sbjct:   178 PFQL 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.453    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       170   0.00086  108 3  11 22  0.44    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  160 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.96u 0.12s 15.08t   Elapsed:  00:00:01
  Total cpu time:  14.96u 0.12s 15.08t   Elapsed:  00:00:01
  Start:  Thu May  9 23:33:26 2013   End:  Thu May  9 23:33:27 2013

Back to top

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data