BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029892
         (186 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q63175|SERC5_RAT Serine incorporator 5 OS=Rattus norvegicus GN=Serinc5 PE=2 SV=1
          Length = 460

 Score = 33.1 bits (74), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 26/142 (18%)

Query: 8   NSQSLNGSHHHTHKVFLYCNYILLGAASSCIFLTLS-------LRLLPSVCGFFFILLHI 60
           NS+S   S H+    F +   +LLGA  S  F            R + +V  FFFI + +
Sbjct: 114 NSKSCRASIHNG---FWFFKLLLLGAMCSGAFFIPDQETFLNVWRYVGAVGSFFFICIQL 170

Query: 61  LTIAGAI----SGCAAASSDSSRWYGAHMVATVLTAIFQGSVSVLV--FTRTSDFLGKLK 114
           L I            A +  +  WY +  +A ++ +I  G ++++   +T+  D +    
Sbjct: 171 LLIVEFAHKWNKNWTAGTVRNKLWYASLSLALIMYSIAVGGLALMAVFYTQWDDCM---- 226

Query: 115 SYVREEDGVVILKLAGGLCVLI 136
                 D  ++L + GGLCVLI
Sbjct: 227 ------DNKILLGVHGGLCVLI 242


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,916,620
Number of Sequences: 539616
Number of extensions: 2367627
Number of successful extensions: 7576
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7573
Number of HSP's gapped (non-prelim): 5
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)