Query 029892
Match_columns 186
No_of_seqs 34 out of 36
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00335 Tetraspannin: Tetrasp 96.9 0.00027 5.9E-09 53.5 0.7 95 20-114 3-108 (221)
2 KOG3882 Tetraspanin family int 96.7 0.0054 1.2E-07 50.5 6.3 96 18-114 8-115 (237)
3 PF13273 DUF4064: Protein of u 76.5 6.8 0.00015 28.7 4.9 45 21-65 56-100 (100)
4 PF14015 DUF4231: Protein of u 48.3 62 0.0014 23.5 5.4 74 14-90 12-88 (112)
5 PTZ00358 hypothetical protein; 45.7 1.8E+02 0.0038 27.8 9.1 92 35-147 202-302 (367)
6 PF13962 PGG: Domain of unknow 45.6 78 0.0017 23.7 5.7 32 12-43 44-75 (113)
7 cd08760 Cyt_b561_FRRS1_like Eu 43.6 1.7E+02 0.0037 23.5 8.2 15 17-31 36-50 (191)
8 PF03188 Cytochrom_B561: Eukar 42.1 1.5E+02 0.0032 22.2 8.0 67 76-153 30-96 (137)
9 PF11127 DUF2892: Protein of u 40.0 63 0.0014 22.0 4.1 21 52-72 33-54 (66)
10 PF04923 Ninjurin: Ninjurin ; 32.4 74 0.0016 24.7 3.8 30 77-106 37-66 (104)
11 PRK09757 PTS system N-acetylga 31.9 37 0.00081 30.2 2.4 12 169-180 255-266 (267)
12 PF04156 IncA: IncA protein; 30.7 1.2E+02 0.0025 24.3 4.8 21 49-69 39-59 (191)
13 KOG1594 Uncharacterized enzyme 29.8 21 0.00047 32.9 0.6 39 148-186 93-136 (305)
14 PF12476 DUF3696: Protein of u 29.0 45 0.00097 22.2 1.9 21 164-184 20-40 (52)
15 cd08554 Cyt_b561 Eukaryotic cy 28.8 2.5E+02 0.0055 21.1 8.6 59 76-142 31-89 (131)
16 COG4174 ABC-type uncharacteriz 26.8 55 0.0012 30.7 2.6 42 81-123 223-265 (364)
17 PF05279 Asp-B-Hydro_N: Aspart 25.2 87 0.0019 27.9 3.5 47 79-127 11-66 (243)
18 PF05915 DUF872: Eukaryotic pr 23.8 1E+02 0.0022 24.4 3.2 41 26-66 46-90 (115)
19 PTZ00359 hypothetical protein; 23.2 2.7E+02 0.0059 27.2 6.5 53 18-70 221-276 (443)
20 COG4270 Predicted membrane pro 23.1 1.6E+02 0.0035 24.3 4.4 55 92-146 14-76 (131)
21 PF02285 COX8: Cytochrome oxid 21.4 34 0.00075 23.3 0.2 33 88-120 12-44 (44)
22 KOG2693 Putative zinc transpor 20.2 2.8E+02 0.006 26.8 6.0 97 41-153 339-448 (453)
No 1
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=96.93 E-value=0.00027 Score=53.52 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHhhc-----------cCcchhHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHH
Q 029892 20 HKVFLYCNYILLGAASSCIFLTLSLR-----------LLPSVCGFFFILLHILTIAGAISGCAAASSDSSRWYGAHMVAT 88 (186)
Q Consensus 20 ~k~fl~lNyiLL~~assci~ltlsLR-----------l~PS~~G~~lIll~~~Ti~sa~~Gcss~~s~t~~cf~aHmv~t 88 (186)
+.++.+.|.+.++.+...+...+.++ ..++..++.++.++++.++.++.||.+....++..-..+.+++
T Consensus 3 k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~ 82 (221)
T PF00335_consen 3 KYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILL 82 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 56778899999998888777777772 2345667788879999998999999876434456678899999
Q ss_pred HHHHHHHhHhhhheeecchhhhhhcc
Q 029892 89 VLTAIFQGSVSVLVFTRTSDFLGKLK 114 (186)
Q Consensus 89 vlsaIgQga~slliFtrt~~~L~~LK 114 (186)
++..+.|..++...+...++..+.++
T Consensus 83 ~~~~v~~~~~~i~~~~~~~~~~~~~~ 108 (221)
T PF00335_consen 83 ILLFVLELVVGIVAFSYRDQLNSSLK 108 (221)
T ss_dssp -----------------HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhcccccccccc
Confidence 99999999999999998888777664
No 2
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=96.66 E-value=0.0054 Score=50.47 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHhhccCcc-----------hhHHHHHHHHHHHHHHhhhcccccccCCCch-HHHHH
Q 029892 18 HTHKVFLYCNYILLGAASSCIFLTLSLRLLPS-----------VCGFFFILLHILTIAGAISGCAAASSDSSRW-YGAHM 85 (186)
Q Consensus 18 ~t~k~fl~lNyiLL~~assci~ltlsLRl~PS-----------~~G~~lIll~~~Ti~sa~~Gcss~~s~t~~c-f~aHm 85 (186)
-.+.++...|++....+..-+...+-++..++ ...+.+|.++++..+-++.||.++- -.++| ...-.
T Consensus 8 ~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~-~es~~lL~~y~ 86 (237)
T KOG3882|consen 8 CLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGAL-RESRCLLLSYF 86 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhH-hhhHHHHHHHH
Confidence 45667888999999999999999998887765 5788999999999999999988763 33455 56778
Q ss_pred HHHHHHHHHHhHhhhheeecchhhhhhcc
Q 029892 86 VATVLTAIFQGSVSVLVFTRTSDFLGKLK 114 (186)
Q Consensus 86 v~tvlsaIgQga~slliFtrt~~~L~~LK 114 (186)
+..++-.+.|.++..+.|...+++.+.++
T Consensus 87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~ 115 (237)
T KOG3882|consen 87 ILLLLLFIAELAAGILAFVFRDSLRDELE 115 (237)
T ss_pred HHHHHHHHHHHHHHHHhheeHHHHHHHHH
Confidence 88889999999999999966655554443
No 3
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=76.47 E-value=6.8 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhccCcchhHHHHHHHHHHHHHH
Q 029892 21 KVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHILTIAG 65 (186)
Q Consensus 21 k~fl~lNyiLL~~assci~ltlsLRl~PS~~G~~lIll~~~Ti~s 65 (186)
..+.......++.+.-.++.++.+|-.|...|+++|+.+++++.+
T Consensus 56 ~~~~~~~i~~ii~~il~iia~i~ikk~~k~~Gil~Ii~aii~~~~ 100 (100)
T PF13273_consen 56 TFGIILGIIAIISSILGIIASILIKKNPKLAGILFIIAAIISLFS 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhhHHHHHHHhC
Confidence 445566666777888888999999999999999999999988753
No 4
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=48.28 E-value=62 Score=23.47 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=34.6
Q ss_pred cccchhhHHHHHHHHHHHhhhhhHHHHHHhhcc--CcchhHHHHHHH-HHHHHHHhhhcccccccCCCchHHHHHHHHHH
Q 029892 14 GSHHHTHKVFLYCNYILLGAASSCIFLTLSLRL--LPSVCGFFFILL-HILTIAGAISGCAAASSDSSRWYGAHMVATVL 90 (186)
Q Consensus 14 ~~h~~t~k~fl~lNyiLL~~assci~ltlsLRl--~PS~~G~~lIll-~~~Ti~sa~~Gcss~~s~t~~cf~aHmv~tvl 90 (186)
.++.+.++.+..++.++...+..--+++..-.+ .....++...++ .+.++++++.+... ...+|+....++-.+
T Consensus 12 ~~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~W~~~r~tae~l 88 (112)
T PF14015_consen 12 RRAQRRYRRLRIASIILSVLGAVIPVLASLSGLGGGSSWLKLVAAILSALAAILASLAAFFR---FHERWIRYRATAESL 88 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHH
Confidence 344555666666666654444332222222222 222333333333 33445555554432 356888887765443
No 5
>PTZ00358 hypothetical protein; Provisional
Probab=45.72 E-value=1.8e+02 Score=27.78 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=60.9
Q ss_pred hhHHHHHHhhccCcchhHHHHHHHHHHHHHHhh------hcccccccCCC---chHHHHHHHHHHHHHHHhHhhhheeec
Q 029892 35 SSCIFLTLSLRLLPSVCGFFFILLHILTIAGAI------SGCAAASSDSS---RWYGAHMVATVLTAIFQGSVSVLVFTR 105 (186)
Q Consensus 35 ssci~ltlsLRl~PS~~G~~lIll~~~Ti~sa~------~Gcss~~s~t~---~cf~aHmv~tvlsaIgQga~slliFtr 105 (186)
+-.+.-...||+|=|..=...++.++++++|-+ .|-.+. ...+ ...+.|.+++..+.-
T Consensus 202 tmavlw~tilkLPYTv~EVV~LiasalAvasLLa~l~i~~~~~~~-~~~~~~Y~lLalHlIalgiTly------------ 268 (367)
T PTZ00358 202 TMAVIWNTILKLPYTVPEVVALIASALAVASLLAVLAIYGGTNSV-LLSTQGYPFLALHLVALGITLY------------ 268 (367)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccCCcceehHHHHHHHHHHHHh------------
Confidence 445566778999999999999999999988877 222111 1233 445667666665543
Q ss_pred chhhhhhccccccCcchhhHHhhhhhHHHHHHHHHHHHHHHH
Q 029892 106 TSDFLGKLKSYVREEDGVVILKLAGGLCVLIFCLEWVVLTLA 147 (186)
Q Consensus 106 t~~~L~~LKS~vr~~dakviLrl~gGl~~~mfcLq~vVLvLa 147 (186)
.+..=|+..-||| ++.+|++.+...+-|++.+..
T Consensus 269 ---cleyK~~fyWPKD-----~~CfGVLavV~ll~ll~v~v~ 302 (367)
T PTZ00358 269 ---CLEYKKVFYWPKD-----YMCFGVLAAVLLLVLVVVVVI 302 (367)
T ss_pred ---hheecccccccch-----heeeHHHHHHHHHHHHHHHee
Confidence 2222245778888 589999877766666655543
No 6
>PF13962 PGG: Domain of unknown function
Probab=45.55 E-value=78 Score=23.69 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.4
Q ss_pred CCcccchhhHHHHHHHHHHHhhhhhHHHHHHh
Q 029892 12 LNGSHHHTHKVFLYCNYILLGAASSCIFLTLS 43 (186)
Q Consensus 12 ~~~~h~~t~k~fl~lNyiLL~~assci~ltls 43 (186)
+-.+|+..-+.|.++|-+-+..|...+++.++
T Consensus 44 il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~ 75 (113)
T PF13962_consen 44 ILAKKPSAFKAFLISNTIAFFSSLAAIFLLIS 75 (113)
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456658899999999999999999888884
No 7
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=43.58 E-value=1.7e+02 Score=23.52 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=7.3
Q ss_pred chhhHHHHHHHHHHH
Q 029892 17 HHTHKVFLYCNYILL 31 (186)
Q Consensus 17 ~~t~k~fl~lNyiLL 31 (186)
.+.|..+...=+.++
T Consensus 36 ~~~Hg~lm~iaw~~l 50 (191)
T cd08760 36 IKAHGVLMAIAWGIL 50 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355655554444433
No 8
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=42.06 E-value=1.5e+02 Score=22.24 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=45.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhHhhhheeecchhhhhhccccccCcchhhHHhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 029892 76 DSSRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVILKLAGGLCVLIFCLEWVVLTLAFFLKYY 153 (186)
Q Consensus 76 ~t~~cf~aHmv~tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~dakviLrl~gGl~~~mfcLq~vVLvLaf~l~~~ 153 (186)
++..++..|..+-+++.+.-..+..++|...++- ..++-+-.=...|-..++...+|++ ++++.++.
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~--------~~~h~~s~H~~lG~~~~~l~~~Q~~---~G~~~~~~ 96 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAIIGFVAIFINKNRN--------GKPHFKSWHSILGLATFVLALLQPL---LGFFRFFM 96 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------CCCCCCCchhhhhHHHHHHHHHHHH---HHHHHHcc
Confidence 4678999999999999999888888887644322 1111122234567777888888888 55555543
No 9
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=40.04 E-value=63 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.600 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhc-ccc
Q 029892 52 GFFFILLHILTIAGAISG-CAA 72 (186)
Q Consensus 52 G~~lIll~~~Ti~sa~~G-css 72 (186)
+|++.++++.-+++++.| |..
T Consensus 33 ~~~~~~~g~~ll~~g~~g~Cp~ 54 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGITGFCPL 54 (66)
T ss_pred HHHHHHHHHHHHHHHHHCcCHh
Confidence 999999999999999999 653
No 10
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=32.44 E-value=74 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=26.0
Q ss_pred CCchHHHHHHHHHHHHHHHhHhhhheeecc
Q 029892 77 SSRWYGAHMVATVLTAIFQGSVSVLVFTRT 106 (186)
Q Consensus 77 t~~cf~aHmv~tvlsaIgQga~slliFtrt 106 (186)
.+..|..=+++...|.+.|..+.+++....
T Consensus 37 ~~~~y~~~l~Li~iSlvLQv~vgilli~~~ 66 (104)
T PF04923_consen 37 EHPFYYFLLTLISISLVLQVVVGILLIFIS 66 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998876544
No 11
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=31.87 E-value=37 Score=30.20 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=8.3
Q ss_pred ccccccccCCCC
Q 029892 169 AKVSQEEDLKDW 180 (186)
Q Consensus 169 ~k~~~~~~~k~w 180 (186)
.|.++|||..||
T Consensus 255 ~~~~~~ed~~~~ 266 (267)
T PRK09757 255 ASKNEEEDYSNG 266 (267)
T ss_pred cccccccccccC
Confidence 455567788887
No 12
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.65 E-value=1.2e+02 Score=24.32 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=9.1
Q ss_pred chhHHHHHHHHHHHHHHhhhc
Q 029892 49 SVCGFFFILLHILTIAGAISG 69 (186)
Q Consensus 49 S~~G~~lIll~~~Ti~sa~~G 69 (186)
...|...+.++++-+++++.-
T Consensus 39 ~~lg~~~lAlg~vL~~~g~~~ 59 (191)
T PF04156_consen 39 FILGIALLALGVVLLSLGLLC 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 13
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=29.80 E-value=21 Score=32.89 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHhhhheeecCCCCCcccccccccc-----ccccCCCCCCCCCC
Q 029892 148 FFLKYYAYVEGGNGTPAVRRSAKVS-----QEEDLKDWPWPFQV 186 (186)
Q Consensus 148 f~l~~~~~~d~~~~~~~~~~~~k~~-----~~~~~k~wp~~~q~ 186 (186)
|.=+--|-+|++....+-...+-|+ .||++|-||+.||.
T Consensus 93 FaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~ 136 (305)
T KOG1594|consen 93 FARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFEL 136 (305)
T ss_pred cccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEE
Confidence 4445567788864422211112332 68889999999973
No 14
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=29.01 E-value=45 Score=22.23 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=13.3
Q ss_pred cccccccccccccCCCCCCCC
Q 029892 164 AVRRSAKVSQEEDLKDWPWPF 184 (186)
Q Consensus 164 ~~~~~~k~~~~~~~k~wp~~~ 184 (186)
+-.+.-++..+-.+.+||-.|
T Consensus 20 t~v~~i~id~~G~l~~WP~GF 40 (52)
T PF12476_consen 20 TEVRKIKIDEDGRLSNWPEGF 40 (52)
T ss_pred cEEEEeeECCCCCCccCCCch
Confidence 333545565555689999665
No 15
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=28.80 E-value=2.5e+02 Score=21.08 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=31.8
Q ss_pred CCCchHHHHHHHHHHHHHHHhHhhhheeecchhhhhhccccccCcchhhHHhhhhhHHHHHHHHHHH
Q 029892 76 DSSRWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVILKLAGGLCVLIFCLEWV 142 (186)
Q Consensus 76 ~t~~cf~aHmv~tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~dakviLrl~gGl~~~mfcLq~v 142 (186)
+++.++..|..+..++.+.-.+...++|...++ +....- +-.=...|-+.++.+++|++
T Consensus 31 ~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~-----~~~~h~---~s~Hs~lGl~~~~l~~~q~~ 89 (131)
T cd08554 31 TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA-----GGIANL---YSLHSWLGLATVLLFLLQFL 89 (131)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCcccc---hhHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776666666666654331 011111 11123445566666666666
No 16
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=26.78 E-value=55 Score=30.73 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhheeecchhhhhhc-cccccCcchh
Q 029892 81 YGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKL-KSYVREEDGV 123 (186)
Q Consensus 81 f~aHmv~tvlsaIgQga~slliFtrt~~~L~~L-KS~vr~~dak 123 (186)
|.+||++-+.+..--+-+.+.+-|| |.||.+. |.||-..+||
T Consensus 223 YlWH~tLPv~a~v~g~FAt~TlLtK-NSFldEi~KqYVvTARAK 265 (364)
T COG4174 223 YLWHITLPVLALVLGGFATLTLLTK-NSFLDEIRKQYVVTARAK 265 (364)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhh-hhHHHHHhhheeeehhhc
Confidence 7899999999888888888888887 5689888 7887655554
No 17
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=25.22 E-value=87 Score=27.91 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHhHhhhheee--cchhhhhhcccc-------ccCcchhhHHh
Q 029892 79 RWYGAHMVATVLTAIFQGSVSVLVFT--RTSDFLGKLKSY-------VREEDGVVILK 127 (186)
Q Consensus 79 ~cf~aHmv~tvlsaIgQga~slliFt--rt~~~L~~LKS~-------vr~~dakviLr 127 (186)
+-|+|-||+.++-.- .++++..|. --+.+++.|-.| -|.|||||+|=
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~kL~iYDaDGDGDFDveDAKVLLg 66 (243)
T PF05279_consen 11 SFFTWFLVLALLGVW--SSVAVVMFDLVDYKSVLGKLGIYDADGDGDFDVEDAKVLLG 66 (243)
T ss_pred chHHHHHHHHHHHHH--HhhHhhheehhhHHHHhhhheeeeccCCCcccccccccccc
Confidence 567777777665443 355666664 335677888777 68899999873
No 18
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.81 E-value=1e+02 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhHHHHHHhhcc----CcchhHHHHHHHHHHHHHHh
Q 029892 26 CNYILLGAASSCIFLTLSLRL----LPSVCGFFFILLHILTIAGA 66 (186)
Q Consensus 26 lNyiLL~~assci~ltlsLRl----~PS~~G~~lIll~~~Ti~sa 66 (186)
+=..||+.++..++.-+.+=. .++.-+|.|+++++++++=+
T Consensus 46 la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG 90 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPG 90 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhcc
Confidence 345566666666655544433 45888999999999998754
No 19
>PTZ00359 hypothetical protein; Provisional
Probab=23.18 E-value=2.7e+02 Score=27.16 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHhhccCcchhHHHHHHHHHHH---HHHhhhcc
Q 029892 18 HTHKVFLYCNYILLGAASSCIFLTLSLRLLPSVCGFFFILLHILT---IAGAISGC 70 (186)
Q Consensus 18 ~t~k~fl~lNyiLL~~assci~ltlsLRl~PS~~G~~lIll~~~T---i~sa~~Gc 70 (186)
+.||.....||+++++..-|.-=.=.=.++=|.+=+.||++.... +++.+.++
T Consensus 221 ~~~k~~a~lNYvllIaL~iSAYQVNmCC~pft~~D~vFL~L~G~~vGiLItV~ls~ 276 (443)
T PTZ00359 221 HVHRFMAALNYIFVIGLCISAYQVNLCCMSFTKCDGVFIFLTGTVVGILITVCLSM 276 (443)
T ss_pred eeEeccchHHHHHHHHHHHhhheeeEEEeeccchhhhHHHHhhhHHHHHHHHHhhh
Confidence 445677999999999876665555555677788888888876543 34444444
No 20
>COG4270 Predicted membrane protein [Function unknown]
Probab=23.06 E-value=1.6e+02 Score=24.33 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=37.3
Q ss_pred HHHHhHhhhheeecchhhhhhccccccCcchhhHH----hhhhhHHHHH----HHHHHHHHHH
Q 029892 92 AIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVIL----KLAGGLCVLI----FCLEWVVLTL 146 (186)
Q Consensus 92 aIgQga~slliFtrt~~~L~~LKS~vr~~dakviL----rl~gGl~~~m----fcLq~vVLvL 146 (186)
+++-...-+.=||||++|.+-.-+++--..++|++ .+.||+...+ =|.-|-...|
T Consensus 14 a~~f~~iGi~HF~r~eqf~~IVPp~vP~p~tav~VSG~fEilgglaLlip~~s~~aa~gl~~l 76 (131)
T COG4270 14 AAAFLLIGIGHFTRPEQFRRIVPPCVPLPKTAVLVSGIFEILGGLALLIPAPSQAAAWGLIIL 76 (131)
T ss_pred HHHHHHHhhhhccchhhhcccCCCCCCcchhHHHHHHHHHHHhhhhhhcCCcHHHHHhhHHHH
Confidence 33334444667999999999998888777888865 5777776654 3445544333
No 21
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=21.38 E-value=34 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHHHHHHHhHhhhheeecchhhhhhccccccCc
Q 029892 88 TVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREE 120 (186)
Q Consensus 88 tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~ 120 (186)
+.=.+||...-.+.++.-..=+|.+|++|++.|
T Consensus 12 ~~e~aigltv~f~~~L~PagWVLshL~~YKk~~ 44 (44)
T PF02285_consen 12 PAEQAIGLTVCFVTFLGPAGWVLSHLESYKKRE 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Confidence 344566666666677777788899999988754
No 22
>KOG2693 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=20.24 E-value=2.8e+02 Score=26.77 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=61.4
Q ss_pred HHhhccCcchhHHHHHH------------HHHHHHHHhhhccccccc-CCCchHHHHHHHHHHHHHHHhHhhhheeecch
Q 029892 41 TLSLRLLPSVCGFFFIL------------LHILTIAGAISGCAAASS-DSSRWYGAHMVATVLTAIFQGSVSVLVFTRTS 107 (186)
Q Consensus 41 tlsLRl~PS~~G~~lIl------------l~~~Ti~sa~~Gcss~~s-~t~~cf~aHmv~tvlsaIgQga~slliFtrt~ 107 (186)
+++.-=+|-=.|=+-|+ +.++|...+++|++.... +..+ -.-+.+-|+..++-..++.+..
T Consensus 339 AVlcHElPHELGDFAILl~sG~s~kqAl~lnllsal~a~~G~~ig~~~~~~~------~~~~~~~I~a~taG~FlYIAl~ 412 (453)
T KOG2693|consen 339 AVLCHEFPHELGDFAILLRSGLSVKQALLLNLLSALTAFAGLAIGLVLGAGD------EEELSSWILAFTAGMFLYIALV 412 (453)
T ss_pred HHHHHhccHHHHHHHHHHHcCCcHHHHHHHHHHhHHHHHhhhheeEEecCCC------ccchHHHHHHHhcCcEEEEEeh
Confidence 34444556666655544 456788888888775432 2222 2233455666677779999999
Q ss_pred hhhhhccccccCcchhhHHhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 029892 108 DFLGKLKSYVREEDGVVILKLAGGLCVLIFCLEWVVLTLAFFLKYY 153 (186)
Q Consensus 108 ~~L~~LKS~vr~~dakviLrl~gGl~~~mfcLq~vVLvLaf~l~~~ 153 (186)
|.+-++.-...++..+ +..|.+|.+-+.++|.+=|+
T Consensus 413 ~m~Pem~~~~~~~~~~----------~~~~~lq~~gil~G~~~ml~ 448 (453)
T KOG2693|consen 413 DVLPEMLESKNSVKKR----------KFCFALQIFGILAGFTIMLL 448 (453)
T ss_pred hhchhhhhccccchhH----------HHHHHHHHHHHHhhhHHHhh
Confidence 9998775444444433 66777788877777776554
Done!