Query 029892
Match_columns 186
No_of_seqs 34 out of 36
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_M VIIIB, IX, cytochrome C 29.9 13 0.00044 24.7 0.3 31 91-121 15-45 (46)
2 2jp3_A FXYD domain-containing 21.7 1.4E+02 0.0047 21.2 4.4 48 79-126 13-60 (67)
3 2y69_M Cytochrome C oxidase po 18.3 34 0.0012 24.4 0.7 33 89-121 37-69 (70)
4 4er8_A Tnparep for protein; pr 17.2 16 0.00056 28.2 -1.4 14 167-183 122-135 (165)
5 2bl0_A Major plasmodial myosin 11.1 29 0.00099 22.7 -1.3 6 177-182 46-51 (63)
6 3ajf_A Non-structural protein 10.7 64 0.0022 24.2 0.3 46 83-128 13-58 (94)
7 3bej_E Nuclear receptor coacti 9.2 46 0.0016 19.8 -0.8 16 8-23 4-19 (26)
8 1wdc_A Scallop myosin; calcium 8.5 30 0.001 22.7 -2.0 6 177-182 48-53 (64)
9 2prg_C Nuclear receptor coacti 8.3 1.1E+02 0.0038 22.7 0.8 14 10-23 59-72 (88)
10 2zxe_G FXYD10, phospholemman-l 7.9 3.2E+02 0.011 19.6 3.1 45 79-123 15-59 (74)
No 1
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=29.92 E-value=13 Score=24.68 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=22.0
Q ss_pred HHHHHhHhhhheeecchhhhhhccccccCcc
Q 029892 91 TAIFQGSVSVLVFTRTSDFLGKLKSYVREED 121 (186)
Q Consensus 91 saIgQga~slliFtrt~~~L~~LKS~vr~~d 121 (186)
.+||...-.+.++.-..=+|.+|++|++.|.
T Consensus 15 ~aigl~v~f~~~L~PagWVLshL~~YKk~e~ 45 (46)
T 1v54_M 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKKSSA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHTC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 4556666666677777889999999988754
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.68 E-value=1.4e+02 Score=21.18 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHhHhhhheeecchhhhhhccccccCcchhhHH
Q 029892 79 RWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVIL 126 (186)
Q Consensus 79 ~cf~aHmv~tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~dakviL 126 (186)
.+.+.++..+++.++.=...++.|+++.=..-..=|+..++||+..++
T Consensus 13 DY~tLRigGLifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a~~li 60 (67)
T 2jp3_A 13 DWESLQLGGLIFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVTPLI 60 (67)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTTTSHHHH
T ss_pred chHHheecchhhHHHHHHHHHHHHHcCcccccCCCCCCCCCccCCcee
Confidence 678899999999999999999999988655444446666778887654
No 3
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=18.31 E-value=34 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.024 Sum_probs=23.1
Q ss_pred HHHHHHHhHhhhheeecchhhhhhccccccCcc
Q 029892 89 VLTAIFQGSVSVLVFTRTSDFLGKLKSYVREED 121 (186)
Q Consensus 89 vlsaIgQga~slliFtrt~~~L~~LKS~vr~~d 121 (186)
.=.+||...-.+.++.=..=+|.+|++|.+.|.
T Consensus 37 ~E~aigltv~f~~~L~PagWVLshLe~YKk~e~ 69 (70)
T 2y69_M 37 KEQAIGLSVTFLSFLLPAGWVLYHLDNYKKSSA 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhccccC
Confidence 334566666666677777889999999988754
No 4
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=17.16 E-value=16 Score=28.21 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=9.1
Q ss_pred ccccccccccCCCCCCC
Q 029892 167 RSAKVSQEEDLKDWPWP 183 (186)
Q Consensus 167 ~~~k~~~~~~~k~wp~~ 183 (186)
|+|-|+ +.+||||.
T Consensus 122 raglV~---~~~dw~~S 135 (165)
T 4er8_A 122 KHGWVK---QVSDWPFS 135 (165)
T ss_dssp HTTSCS---SGGGCCSB
T ss_pred hhcccC---ChhhCCcc
Confidence 666665 34679985
No 5
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=11.07 E-value=29 Score=22.73 Aligned_cols=6 Identities=50% Similarity=2.001 Sum_probs=4.2
Q ss_pred CCCCCC
Q 029892 177 LKDWPW 182 (186)
Q Consensus 177 ~k~wp~ 182 (186)
.++|||
T Consensus 46 lr~w~W 51 (63)
T 2bl0_A 46 FKNWAW 51 (63)
T ss_dssp HTTCHH
T ss_pred hccChH
Confidence 577776
No 6
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=10.67 E-value=64 Score=24.18 Aligned_cols=46 Identities=17% Similarity=0.053 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhHhhhheeecchhhhhhccccccCcchhhHHhh
Q 029892 83 AHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGVVILKL 128 (186)
Q Consensus 83 aHmv~tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~dakviLrl 128 (186)
.|..+-+++.|....-+=-=+.-|-.||++||.+-++|.-.+-||-
T Consensus 13 v~~~~~lL~~~yDi~~~RhPs~deH~FL~ml~~PDd~e~Ls~FLkt 58 (94)
T 3ajf_A 13 LPIPIDLLSLFFDILNERHPSFDEHMFLQMIRKPDDPENLSVFLKS 58 (94)
T ss_dssp EECCHHHHHHHHHHHHHHCTTSCHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHhhccCCCcchHHHHHHhcCCCcHHHHHHHHHH
Confidence 3445556666666666666667788999999988777776666663
No 7
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=9.21 E-value=46 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.9
Q ss_pred CCCCCCcccchhhHHH
Q 029892 8 NSQSLNGSHHHTHKVF 23 (186)
Q Consensus 8 ~~~~~~~~h~~t~k~f 23 (186)
.+.|..|.|.-.||++
T Consensus 4 s~~sL~EkHkILHrLL 19 (26)
T 3bej_E 4 SHSSLTERHKILHRLL 19 (26)
T ss_pred chhhHHHHHHHHHHHH
Confidence 4567889999999976
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=8.51 E-value=30 Score=22.67 Aligned_cols=6 Identities=50% Similarity=2.057 Sum_probs=3.6
Q ss_pred CCCCCC
Q 029892 177 LKDWPW 182 (186)
Q Consensus 177 ~k~wp~ 182 (186)
+|+|||
T Consensus 48 l~~w~W 53 (64)
T 1wdc_A 48 LRNWQW 53 (64)
T ss_dssp HHTCHH
T ss_pred hcCChH
Confidence 456665
No 9
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=8.29 E-value=1.1e+02 Score=22.72 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=9.3
Q ss_pred CCCCcccchhhHHH
Q 029892 10 QSLNGSHHHTHKVF 23 (186)
Q Consensus 10 ~~~~~~h~~t~k~f 23 (186)
.|..|.|.-.||++
T Consensus 59 sSL~EKHKILHrLL 72 (88)
T 2prg_C 59 SSLTERHKILHRLL 72 (88)
T ss_dssp ----CTTHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 57999999999986
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.86 E-value=3.2e+02 Score=19.64 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHhHhhhheeecchhhhhhccccccCcchh
Q 029892 79 RWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGV 123 (186)
Q Consensus 79 ~cf~aHmv~tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~dak 123 (186)
.+.+.++..+++.++.=...++.|+++.=..-..=|+..+|+|++
T Consensus 15 DY~tLRigGLifA~vLfi~GI~iilS~kcrCk~~qk~~~~p~d~~ 59 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIIILLAGKCRCKFNQNKRTRSNSGT 59 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------
T ss_pred chHHheeccchhHHHHHHHHHHHHHcCccccCCCCCCCCCCCccc
Confidence 788999999999999999999999987655544445554666654
Done!