Query 029892
Match_columns 186
No_of_seqs 34 out of 36
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 08:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1frba_ c.1.7.1 (A:) FR-1 (fib 6.7 90 0.0065 23.0 1.6 7 178-184 304-311 (315)
2 d1v54m_ f.23.7.1 (M:) Mitochon 6.4 57 0.0041 19.8 0.2 28 91-118 15-42 (43)
3 d1kqfc_ f.21.1.1 (C:) Formate 6.0 4.2E+02 0.031 18.2 5.2 73 51-123 115-193 (216)
4 d1x58a1 a.4.1.1 (A:8-56) Hypot 5.8 42 0.0031 21.0 -0.7 6 180-185 28-33 (49)
5 d2dsrg1 g.28.1.1 (G:151-229) I 5.7 83 0.006 20.5 0.7 10 152-161 54-63 (79)
6 d1rk8b_ d.232.1.1 (B:) Mago na 5.0 1.1E+02 0.0079 22.6 1.1 9 175-183 70-78 (141)
7 d1kska4 d.265.1.3 (A:60-231) R 5.0 40 0.0029 24.0 -1.4 32 99-130 48-79 (172)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 4.7 2.1E+02 0.015 17.7 2.3 15 54-68 6-20 (158)
9 d1ik7a_ a.77.1.2 (A:) Pelle de 4.6 28 0.0021 22.1 -2.2 24 100-123 25-50 (52)
10 d2dsqg1 g.28.1.1 (G:149-231) I 4.4 1.1E+02 0.008 20.0 0.7 10 152-161 54-63 (83)
No 1
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.70 E-value=90 Score=23.03 Aligned_cols=7 Identities=14% Similarity=0.752 Sum_probs=4.7
Q ss_pred CCCC-CCC
Q 029892 178 KDWP-WPF 184 (186)
Q Consensus 178 k~wp-~~~ 184 (186)
.+|| |||
T Consensus 304 ~~~~~~~~ 311 (315)
T d1frba_ 304 VNMEEYPY 311 (315)
T ss_dssp TTSTTCCT
T ss_pred cCCCCCCC
Confidence 5667 776
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.41 E-value=57 Score=19.84 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=18.1
Q ss_pred HHHHHhHhhhheeecchhhhhhcccccc
Q 029892 91 TAIFQGSVSVLVFTRTSDFLGKLKSYVR 118 (186)
Q Consensus 91 saIgQga~slliFtrt~~~L~~LKS~vr 118 (186)
.+||..+..+.+..-.+=+|++|.+|.+
T Consensus 15 ~aigLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 3555555555666666777777877765
No 3
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=6.03 E-value=4.2e+02 Score=18.21 Aligned_cols=73 Identities=7% Similarity=-0.091 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHhhhccccccc-CCC-----chHHHHHHHHHHHHHHHhHhhhheeecchhhhhhccccccCcchh
Q 029892 51 CGFFFILLHILTIAGAISGCAAASS-DSS-----RWYGAHMVATVLTAIFQGSVSVLVFTRTSDFLGKLKSYVREEDGV 123 (186)
Q Consensus 51 ~G~~lIll~~~Ti~sa~~Gcss~~s-~t~-----~cf~aHmv~tvlsaIgQga~slliFtrt~~~L~~LKS~vr~~dak 123 (186)
..+++++..++-+++++.-...... .-+ .-...|-.+..+-+.+-..=..+.+.+++...++..=|+++|++|
T Consensus 115 ~~~~~~~~~~~~~~TGl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~~~~~l~~M~tG~v~~~~~~ 193 (216)
T d1kqfc_ 115 MFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAK 193 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHTCEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhheeeccHHHHH
Confidence 3445555555555555554432111 111 112356554444443333323333346677777888888888776
No 4
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.78 E-value=42 Score=20.96 Aligned_cols=6 Identities=67% Similarity=1.968 Sum_probs=3.7
Q ss_pred CCCCCC
Q 029892 180 WPWPFQ 185 (186)
Q Consensus 180 wp~~~q 185 (186)
|.+|||
T Consensus 28 Ws~PF~ 33 (49)
T d1x58a1 28 WSFPFQ 33 (49)
T ss_dssp HHSCCC
T ss_pred hccCCC
Confidence 556666
No 5
>d2dsrg1 g.28.1.1 (G:151-229) Insulin-like growth factor-binding protein 4, IGFBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.65 E-value=83 Score=20.53 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=7.7
Q ss_pred hheeecCCCC
Q 029892 152 YYAYVEGGNG 161 (186)
Q Consensus 152 ~~~~~d~~~~ 161 (186)
|||.||...|
T Consensus 54 ~CWCVd~~~G 63 (79)
T d2dsrg1 54 KCWCVDRKTG 63 (79)
T ss_dssp CEEEBCTTTC
T ss_pred EEEEEcCCCC
Confidence 7999997544
No 6
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.03 E-value=1.1e+02 Score=22.60 Aligned_cols=9 Identities=56% Similarity=0.959 Sum_probs=7.0
Q ss_pred ccCCCCCCC
Q 029892 175 EDLKDWPWP 183 (186)
Q Consensus 175 ~~~k~wp~~ 183 (186)
||.+.||-|
T Consensus 70 edD~~WP~p 78 (141)
T d1rk8b_ 70 EDDLPWPPP 78 (141)
T ss_dssp CCCTTSCCC
T ss_pred cccccCCCC
Confidence 566999977
No 7
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=5.02 E-value=40 Score=23.97 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=21.2
Q ss_pred hhheeecchhhhhhccccccCcchhhHHhhhh
Q 029892 99 SVLVFTRTSDFLGKLKSYVREEDGVVILKLAG 130 (186)
Q Consensus 99 slliFtrt~~~L~~LKS~vr~~dakviLrl~g 130 (186)
-+++||..+++.+.|..+...-+-...+++.|
T Consensus 48 GLlL~tndg~~~~~l~~~~~~i~k~Y~v~v~~ 79 (172)
T d1kska4 48 GLVLMTDDGQWSHRITSPRHHCEKTYLVTLES 79 (172)
T ss_dssp EEEEEESCHHHHHHHHCTTSCCCEEEEEEESS
T ss_pred ccEEEecccceeeeeccccccccEEEEEEEec
Confidence 57899999999998854443334444444444
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.67 E-value=2.1e+02 Score=17.72 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhh
Q 029892 54 FFILLHILTIAGAIS 68 (186)
Q Consensus 54 ~lIll~~~Ti~sa~~ 68 (186)
+++++.++.|+++++
T Consensus 6 LlVViaIIgILaaia 20 (158)
T d2pila_ 6 LMIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666644
No 9
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=4.58 E-value=28 Score=22.11 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=17.6
Q ss_pred hheeecchhhhhh--ccccccCcchh
Q 029892 100 VLVFTRTSDFLGK--LKSYVREEDGV 123 (186)
Q Consensus 100 lliFtrt~~~L~~--LKS~vr~~dak 123 (186)
+++|.|.+.+-++ +|+||||+=-+
T Consensus 25 F~ll~~mk~~~aM~iiK~~V~~~~H~ 50 (52)
T d1ik7a_ 25 FALFKKLKLHNAMRLIKDYVSEDLHK 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCHhhhh
Confidence 4567888888775 49999987544
No 10
>d2dsqg1 g.28.1.1 (G:149-231) Insulin-like growth factor-binding protein 1, IGFBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.40 E-value=1.1e+02 Score=20.05 Aligned_cols=10 Identities=30% Similarity=0.032 Sum_probs=7.8
Q ss_pred hheeecCCCC
Q 029892 152 YYAYVEGGNG 161 (186)
Q Consensus 152 ~~~~~d~~~~ 161 (186)
+||.||..+|
T Consensus 54 ~CWCVd~~~G 63 (83)
T d2dsqg1 54 LCWCVYPWNG 63 (83)
T ss_dssp EEEEBCTTTC
T ss_pred eEEEEeCCCC
Confidence 7999998534
Done!