Query 029893
Match_columns 186
No_of_seqs 277 out of 1945
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0378 HypB Ni2+-binding GTPa 100.0 8.1E-33 1.8E-37 211.6 14.4 165 1-176 30-199 (202)
2 PRK10463 hydrogenase nickel in 100.0 1.9E-30 4.1E-35 211.8 14.4 165 2-176 122-287 (290)
3 COG0523 Putative GTPases (G3E 100.0 7.4E-32 1.6E-36 224.0 6.2 155 2-171 19-194 (323)
4 TIGR00101 ureG urease accessor 100.0 1.9E-29 4.2E-34 197.4 12.5 174 2-177 19-195 (199)
5 PF02492 cobW: CobW/HypB/UreG, 99.9 9.2E-29 2E-33 190.3 4.0 142 2-156 18-177 (178)
6 TIGR00073 hypB hydrogenase acc 99.9 2.5E-26 5.5E-31 180.6 13.6 165 2-177 40-206 (207)
7 PRK11537 putative GTP-binding 99.9 8E-27 1.7E-31 194.2 5.8 142 2-159 22-186 (318)
8 TIGR02475 CobW cobalamin biosy 99.9 1.5E-25 3.3E-30 188.2 10.4 153 11-171 30-223 (341)
9 KOG2743 Cobalamin synthesis pr 99.9 1.1E-26 2.3E-31 187.5 2.4 159 4-170 73-259 (391)
10 COG1703 ArgK Putative periplas 99.9 1.6E-21 3.4E-26 158.1 11.9 175 2-183 69-259 (323)
11 PRK09435 membrane ATPase/prote 99.9 1.7E-21 3.7E-26 162.6 12.3 173 2-182 74-264 (332)
12 PF03308 ArgK: ArgK protein; 99.8 1.3E-21 2.9E-26 156.4 4.8 174 2-182 47-234 (266)
13 cd03112 CobW_like The function 99.8 2.1E-20 4.5E-25 141.3 2.9 113 11-131 26-158 (158)
14 TIGR00750 lao LAO/AO transport 99.6 1.4E-14 3E-19 120.0 10.9 172 2-180 52-240 (300)
15 COG1160 Predicted GTPases [Gen 99.5 1.2E-13 2.6E-18 117.9 6.8 120 63-182 215-355 (444)
16 COG1159 Era GTPase [General fu 99.2 3.4E-11 7.3E-16 98.1 7.1 111 68-180 48-174 (298)
17 PF10662 PduV-EutP: Ethanolami 99.1 3.6E-10 7.7E-15 83.7 8.5 96 77-174 39-142 (143)
18 TIGR00436 era GTP-binding prot 99.1 3E-10 6.5E-15 92.7 7.0 106 73-180 47-166 (270)
19 TIGR03594 GTPase_EngA ribosome 99.0 7.9E-10 1.7E-14 95.5 8.7 108 72-181 218-347 (429)
20 PRK00093 GTP-binding protein D 99.0 8.6E-10 1.9E-14 95.5 8.6 108 72-181 219-347 (435)
21 PRK15494 era GTPase Era; Provi 99.0 6E-10 1.3E-14 93.9 7.3 106 72-180 98-218 (339)
22 PRK00089 era GTPase Era; Revie 99.0 5E-10 1.1E-14 92.2 6.5 107 72-179 51-172 (292)
23 PRK13768 GTPase; Provisional 99.0 1.4E-09 3.1E-14 88.1 8.5 112 64-179 87-248 (253)
24 cd04163 Era Era subfamily. Er 99.0 1.1E-09 2.3E-14 81.0 6.9 104 72-176 49-167 (168)
25 PRK15467 ethanolamine utilizat 99.0 2.2E-09 4.8E-14 80.8 8.6 101 78-181 41-150 (158)
26 PF00009 GTP_EFTU: Elongation 99.0 2.7E-10 5.8E-15 88.0 3.4 106 71-179 67-188 (188)
27 cd00881 GTP_translation_factor 99.0 9.3E-10 2E-14 83.7 5.9 104 73-178 61-187 (189)
28 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 3.3E-09 7.2E-14 79.3 7.3 105 72-179 48-167 (168)
29 cd01895 EngA2 EngA2 subfamily. 98.9 4.6E-09 9.9E-14 78.4 7.8 105 72-176 48-173 (174)
30 TIGR02528 EutP ethanolamine ut 98.9 5.5E-09 1.2E-13 76.5 8.0 96 77-174 38-141 (142)
31 cd01888 eIF2_gamma eIF2-gamma 98.9 1.5E-09 3.3E-14 84.9 4.8 104 74-179 83-200 (203)
32 PRK09518 bifunctional cytidyla 98.9 3.1E-09 6.8E-14 97.5 7.5 109 72-182 496-625 (712)
33 PRK03003 GTP-binding protein D 98.9 2.6E-09 5.7E-14 93.7 6.4 109 72-182 257-386 (472)
34 cd03114 ArgK-like The function 98.9 3.3E-09 7.2E-14 79.3 6.0 123 3-130 18-148 (148)
35 cd01890 LepA LepA subfamily. 98.9 4.8E-09 1E-13 79.5 6.8 104 72-178 65-177 (179)
36 cd01889 SelB_euk SelB subfamil 98.9 4.8E-09 1E-13 81.1 6.8 105 72-178 66-186 (192)
37 cd00880 Era_like Era (E. coli 98.9 1.1E-08 2.5E-13 74.4 8.2 102 73-176 44-162 (163)
38 PTZ00099 rab6; Provisional 98.9 1.2E-08 2.5E-13 78.3 8.4 109 72-182 27-146 (176)
39 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 6.7E-09 1.5E-13 79.7 6.2 107 72-180 50-172 (183)
40 cd04165 GTPBP1_like GTPBP1-lik 98.8 7.1E-09 1.5E-13 82.6 6.5 104 71-176 81-221 (224)
41 KOG0462 Elongation factor-type 98.8 6.8E-09 1.5E-13 90.6 6.5 103 74-182 125-239 (650)
42 cd01897 NOG NOG1 is a nucleola 98.8 1.7E-08 3.6E-13 75.7 7.9 101 72-177 45-167 (168)
43 cd04160 Arfrp1 Arfrp1 subfamil 98.8 6.9E-09 1.5E-13 77.7 5.8 102 72-175 48-166 (167)
44 cd04171 SelB SelB subfamily. 98.8 1.2E-08 2.5E-13 75.8 6.9 101 73-175 50-163 (164)
45 PRK12299 obgE GTPase CgtA; Rev 98.8 4E-08 8.6E-13 82.8 10.4 106 73-182 205-332 (335)
46 cd01894 EngA1 EngA1 subfamily. 98.8 1.9E-08 4.2E-13 74.1 7.0 99 72-176 43-156 (157)
47 cd01898 Obg Obg subfamily. Th 98.8 5E-08 1.1E-12 73.1 9.3 101 74-176 48-169 (170)
48 COG0486 ThdF Predicted GTPase 98.8 1.1E-08 2.4E-13 88.0 6.3 111 63-180 254-378 (454)
49 cd01879 FeoB Ferrous iron tran 98.8 2.5E-08 5.3E-13 73.7 7.2 102 73-177 42-156 (158)
50 cd01859 MJ1464 MJ1464. This f 98.8 3.7E-08 8E-13 73.6 8.1 82 94-179 12-97 (156)
51 KOG0092 GTPase Rab5/YPT51 and 98.8 2.9E-08 6.2E-13 76.2 7.4 109 73-183 53-172 (200)
52 PRK12298 obgE GTPase CgtA; Rev 98.8 5.5E-08 1.2E-12 83.4 10.1 104 75-180 208-335 (390)
53 cd04158 ARD1 ARD1 subfamily. 98.8 3.4E-08 7.4E-13 74.7 7.8 107 72-180 41-163 (169)
54 cd01855 YqeH YqeH. YqeH is an 98.8 5.5E-08 1.2E-12 75.1 9.1 86 92-178 32-125 (190)
55 cd04149 Arf6 Arf6 subfamily. 98.8 1.9E-08 4.1E-13 76.3 6.3 102 72-175 51-167 (168)
56 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.4E-08 3E-13 76.2 5.4 83 93-178 7-95 (157)
57 cd04157 Arl6 Arl6 subfamily. 98.8 3.4E-08 7.4E-13 73.4 7.5 102 72-175 43-161 (162)
58 cd04154 Arl2 Arl2 subfamily. 98.7 1.9E-08 4.2E-13 76.2 6.0 101 73-175 57-172 (173)
59 cd01849 YlqF_related_GTPase Yl 98.7 4.4E-08 9.4E-13 73.4 7.9 79 96-177 1-84 (155)
60 cd04164 trmE TrmE (MnmE, ThdF, 98.7 2.8E-08 6.1E-13 73.1 6.5 97 72-177 47-156 (157)
61 cd04151 Arl1 Arl1 subfamily. 98.7 1.6E-08 3.4E-13 75.4 5.1 102 72-175 41-157 (158)
62 PRK09866 hypothetical protein; 98.7 2.8E-08 6E-13 89.0 7.2 103 73-175 229-350 (741)
63 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 6.3E-08 1.4E-12 75.3 8.3 109 72-181 48-171 (201)
64 cd04136 Rap_like Rap-like subf 98.7 7.9E-08 1.7E-12 71.5 8.4 102 73-176 48-161 (163)
65 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 3.6E-08 7.7E-13 75.0 6.6 102 72-175 57-173 (174)
66 smart00173 RAS Ras subfamily o 98.7 9.5E-08 2.1E-12 71.3 8.2 105 73-179 47-163 (164)
67 cd04126 Rab20 Rab20 subfamily. 98.7 1.2E-07 2.6E-12 75.3 8.9 107 73-179 43-191 (220)
68 cd04139 RalA_RalB RalA/RalB su 98.7 4.6E-08 9.9E-13 72.6 5.9 105 72-178 46-162 (164)
69 TIGR02729 Obg_CgtA Obg family 98.7 6.7E-08 1.5E-12 81.2 7.5 101 74-177 205-328 (329)
70 cd04142 RRP22 RRP22 subfamily. 98.7 1.9E-07 4E-12 72.9 9.1 106 73-179 48-175 (198)
71 cd04120 Rab12 Rab12 subfamily. 98.6 1E-07 2.2E-12 74.7 7.4 105 73-178 48-163 (202)
72 cd04175 Rap1 Rap1 subgroup. T 98.6 1.6E-07 3.5E-12 70.2 8.2 103 73-177 48-162 (164)
73 cd01863 Rab18 Rab18 subfamily. 98.6 1.1E-07 2.5E-12 70.6 7.2 101 73-176 48-160 (161)
74 cd00877 Ran Ran (Ras-related n 98.6 5.1E-08 1.1E-12 73.6 5.4 103 72-178 47-159 (166)
75 cd04119 RJL RJL (RabJ-Like) su 98.6 1E-07 2.3E-12 70.9 6.9 104 72-177 47-166 (168)
76 cd01864 Rab19 Rab19 subfamily. 98.6 8.7E-08 1.9E-12 71.8 6.4 103 73-176 51-164 (165)
77 cd04150 Arf1_5_like Arf1-Arf5- 98.6 8.6E-08 1.9E-12 71.9 6.4 102 72-175 42-158 (159)
78 smart00177 ARF ARF-like small 98.6 1.4E-07 2.9E-12 72.0 7.5 104 72-177 55-173 (175)
79 cd01881 Obg_like The Obg-like 98.6 6.9E-08 1.5E-12 72.6 5.8 102 73-176 43-175 (176)
80 cd01892 Miro2 Miro2 subfamily. 98.6 5.4E-08 1.2E-12 73.7 5.2 103 74-177 54-165 (169)
81 cd01878 HflX HflX subfamily. 98.6 1.4E-07 3.1E-12 73.3 7.7 96 74-176 89-203 (204)
82 cd04110 Rab35 Rab35 subfamily. 98.6 2E-07 4.3E-12 72.5 8.5 108 73-182 54-171 (199)
83 PLN00223 ADP-ribosylation fact 98.6 1.3E-07 2.9E-12 72.6 7.3 105 72-178 59-178 (181)
84 PTZ00327 eukaryotic translatio 98.6 4.6E-08 9.9E-13 85.5 5.1 104 74-179 117-234 (460)
85 cd01856 YlqF YlqF. Proteins o 98.6 2.5E-07 5.5E-12 70.4 8.6 82 93-178 18-101 (171)
86 cd04156 ARLTS1 ARLTS1 subfamil 98.6 6.3E-08 1.4E-12 72.0 5.1 101 73-175 43-159 (160)
87 smart00178 SAR Sar1p-like memb 98.6 9.9E-08 2.1E-12 73.3 6.3 103 72-176 59-183 (184)
88 TIGR03156 GTP_HflX GTP-binding 98.6 8.3E-08 1.8E-12 81.3 6.2 97 72-176 235-350 (351)
89 cd04101 RabL4 RabL4 (Rab-like4 98.6 7.6E-08 1.7E-12 71.8 5.3 104 72-177 50-163 (164)
90 cd04112 Rab26 Rab26 subfamily. 98.6 1.7E-07 3.7E-12 72.3 7.3 106 73-180 49-165 (191)
91 cd04121 Rab40 Rab40 subfamily. 98.6 1.9E-07 4.1E-12 72.4 7.6 106 73-180 54-169 (189)
92 cd04148 RGK RGK subfamily. Th 98.6 1.1E-07 2.4E-12 75.3 6.4 106 72-179 48-164 (221)
93 cd04124 RabL2 RabL2 subfamily. 98.6 8.4E-08 1.8E-12 71.9 5.4 104 72-180 47-160 (161)
94 TIGR00475 selB selenocysteine- 98.6 1.3E-07 2.8E-12 85.1 7.4 107 73-181 49-169 (581)
95 cd04128 Spg1 Spg1p. Spg1p (se 98.6 6.5E-08 1.4E-12 74.4 4.8 107 73-181 48-169 (182)
96 cd00878 Arf_Arl Arf (ADP-ribos 98.6 1.8E-07 3.9E-12 69.4 7.1 101 73-175 42-157 (158)
97 cd00879 Sar1 Sar1 subfamily. 98.6 1.4E-07 3E-12 72.4 6.6 102 73-176 62-189 (190)
98 PTZ00133 ADP-ribosylation fact 98.6 2.1E-07 4.6E-12 71.4 7.6 106 72-179 59-179 (182)
99 cd04137 RheB Rheb (Ras Homolog 98.6 1.5E-07 3.2E-12 71.5 6.6 108 73-182 48-167 (180)
100 PRK12296 obgE GTPase CgtA; Rev 98.6 2.1E-07 4.6E-12 81.9 8.4 106 73-182 205-344 (500)
101 PRK10512 selenocysteinyl-tRNA- 98.6 1.1E-07 2.3E-12 86.1 6.6 105 74-180 51-168 (614)
102 cd04109 Rab28 Rab28 subfamily. 98.6 2.3E-07 5E-12 73.1 7.7 105 73-179 49-167 (215)
103 COG0481 LepA Membrane GTPase L 98.6 1.1E-07 2.3E-12 82.1 6.2 105 74-182 76-190 (603)
104 cd04176 Rap2 Rap2 subgroup. T 98.6 1.5E-07 3.2E-12 70.2 6.3 103 73-177 48-162 (163)
105 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 1.9E-07 4.2E-12 70.9 7.0 105 73-179 49-165 (172)
106 cd04145 M_R_Ras_like M-Ras/R-R 98.6 3.2E-07 7E-12 68.2 8.0 103 73-177 49-163 (164)
107 KOG1532 GTPase XAB1, interacts 98.6 4.1E-07 8.9E-12 73.9 8.9 129 46-181 88-267 (366)
108 cd04122 Rab14 Rab14 subfamily. 98.6 3.2E-07 6.9E-12 68.8 7.9 103 73-177 50-163 (166)
109 cd04127 Rab27A Rab27a subfamil 98.6 2.2E-07 4.8E-12 70.5 7.1 103 73-177 62-176 (180)
110 cd01884 EF_Tu EF-Tu subfamily. 98.6 1E-07 2.3E-12 74.3 5.4 94 72-166 63-171 (195)
111 cd04140 ARHI_like ARHI subfami 98.6 2.7E-07 5.8E-12 69.3 7.4 102 73-176 48-163 (165)
112 cd04147 Ras_dva Ras-dva subfam 98.6 3.4E-07 7.3E-12 71.1 8.2 104 74-178 47-163 (198)
113 cd01860 Rab5_related Rab5-rela 98.6 2.1E-07 4.5E-12 69.3 6.7 104 72-177 48-162 (163)
114 COG0532 InfB Translation initi 98.6 2E-07 4.3E-12 81.4 7.4 102 72-177 53-169 (509)
115 cd01865 Rab3 Rab3 subfamily. 98.6 2.7E-07 5.8E-12 69.3 7.2 105 73-179 49-164 (165)
116 PLN03118 Rab family protein; P 98.5 2.8E-07 6.2E-12 72.2 7.5 106 73-180 61-179 (211)
117 cd04113 Rab4 Rab4 subfamily. 98.5 1.9E-07 4.1E-12 69.5 6.2 102 73-176 48-160 (161)
118 cd04143 Rhes_like Rhes_like su 98.5 3.2E-07 6.9E-12 74.1 7.8 104 73-177 47-170 (247)
119 PRK05291 trmE tRNA modificatio 98.5 2.2E-07 4.8E-12 81.2 7.4 98 72-179 261-371 (449)
120 PRK04213 GTP-binding protein; 98.5 4.6E-07 9.9E-12 70.2 8.5 84 95-179 91-193 (201)
121 cd04134 Rho3 Rho3 subfamily. 98.5 3.5E-07 7.6E-12 70.5 7.7 106 73-179 47-175 (189)
122 cd01893 Miro1 Miro1 subfamily. 98.5 1.3E-07 2.8E-12 71.2 5.0 106 72-177 45-163 (166)
123 TIGR03596 GTPase_YlqF ribosome 98.5 3.4E-07 7.3E-12 75.1 7.8 85 93-181 20-106 (276)
124 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 4.7E-07 1E-11 67.8 8.0 104 73-178 50-164 (166)
125 cd01867 Rab8_Rab10_Rab13_like 98.5 3.3E-07 7.2E-12 68.9 7.0 103 73-177 51-164 (167)
126 cd04106 Rab23_lke Rab23-like s 98.5 1.3E-07 2.9E-12 70.3 4.6 102 72-175 49-160 (162)
127 COG1160 Predicted GTPases [Gen 98.5 1E-07 2.3E-12 81.8 4.4 102 71-178 48-165 (444)
128 cd04123 Rab21 Rab21 subfamily. 98.5 4.8E-07 1E-11 66.8 7.5 103 73-177 48-161 (162)
129 cd01873 RhoBTB RhoBTB subfamil 98.5 2.8E-07 6.1E-12 71.8 6.4 102 72-175 64-193 (195)
130 cd04144 Ras2 Ras2 subfamily. 98.5 8.3E-07 1.8E-11 68.4 9.0 104 73-178 46-163 (190)
131 PRK12297 obgE GTPase CgtA; Rev 98.5 1.1E-06 2.4E-11 76.2 10.5 102 73-180 205-329 (424)
132 PTZ00369 Ras-like protein; Pro 98.5 8.2E-07 1.8E-11 68.4 8.8 104 73-178 52-167 (189)
133 cd04138 H_N_K_Ras_like H-Ras/N 98.5 6.5E-07 1.4E-11 66.2 8.0 100 74-176 49-160 (162)
134 cd01891 TypA_BipA TypA (tyrosi 98.5 1.7E-07 3.7E-12 72.5 4.9 98 72-169 63-173 (194)
135 cd04132 Rho4_like Rho4-like su 98.5 1.6E-07 3.4E-12 71.9 4.5 108 73-181 48-170 (187)
136 CHL00189 infB translation init 98.5 3.6E-07 7.9E-12 83.8 7.6 102 73-177 294-409 (742)
137 cd04114 Rab30 Rab30 subfamily. 98.5 4.7E-07 1E-11 67.8 7.1 102 73-176 55-167 (169)
138 cd04155 Arl3 Arl3 subfamily. 98.5 3.8E-07 8.1E-12 68.7 6.4 101 73-175 57-172 (173)
139 TIGR01393 lepA GTP-binding pro 98.5 2.4E-07 5.2E-12 83.5 6.2 105 73-180 69-182 (595)
140 cd01866 Rab2 Rab2 subfamily. 98.5 3.6E-07 7.9E-12 68.8 6.2 104 73-178 52-166 (168)
141 smart00174 RHO Rho (Ras homolo 98.5 5.1E-07 1.1E-11 68.0 6.9 105 72-177 44-171 (174)
142 COG2262 HflX GTPases [General 98.5 5.3E-07 1.2E-11 76.6 7.6 100 73-179 239-357 (411)
143 cd01861 Rab6 Rab6 subfamily. 98.5 4.2E-07 9E-12 67.5 6.2 101 74-176 49-160 (161)
144 PRK05433 GTP-binding protein L 98.5 4E-07 8.6E-12 82.2 7.1 103 73-180 73-186 (600)
145 TIGR03680 eif2g_arch translati 98.5 3.3E-07 7.2E-12 79.1 6.3 104 73-178 79-196 (406)
146 cd00882 Ras_like_GTPase Ras-li 98.5 3.7E-07 7.9E-12 65.4 5.5 101 72-174 43-156 (157)
147 KOG0088 GTPase Rab21, small G 98.4 3.9E-07 8.5E-12 68.2 5.6 104 72-177 60-174 (218)
148 smart00175 RAB Rab subfamily o 98.4 6.6E-07 1.4E-11 66.4 6.9 103 74-178 49-162 (164)
149 cd04111 Rab39 Rab39 subfamily. 98.4 7.9E-07 1.7E-11 70.0 7.6 106 73-180 51-168 (211)
150 cd01868 Rab11_like Rab11-like. 98.4 5.2E-07 1.1E-11 67.4 6.3 103 73-177 51-164 (165)
151 smart00176 RAN Ran (Ras-relate 98.4 5.5E-07 1.2E-11 70.5 6.6 104 72-179 42-155 (200)
152 TIGR00487 IF-2 translation ini 98.4 9E-07 1.9E-11 79.7 8.7 98 75-175 136-247 (587)
153 TIGR00437 feoB ferrous iron tr 98.4 4.6E-07 1E-11 81.6 6.9 102 73-177 40-154 (591)
154 cd01862 Rab7 Rab7 subfamily. 98.4 4.2E-07 9.2E-12 68.1 5.5 106 74-180 49-169 (172)
155 PRK04000 translation initiatio 98.4 4.3E-07 9.3E-12 78.5 6.2 104 74-179 85-202 (411)
156 cd00157 Rho Rho (Ras homology) 98.4 8E-07 1.7E-11 66.5 7.0 102 73-175 47-170 (171)
157 PRK12289 GTPase RsgA; Reviewed 98.4 8.7E-07 1.9E-11 75.1 7.9 78 94-175 89-172 (352)
158 cd04161 Arl2l1_Arl13_like Arl2 98.4 6.9E-07 1.5E-11 67.5 6.5 102 72-175 41-166 (167)
159 cd01871 Rac1_like Rac1-like su 98.4 2.5E-07 5.5E-12 70.5 4.1 103 72-175 47-172 (174)
160 cd04116 Rab9 Rab9 subfamily. 98.4 9E-07 2E-11 66.5 7.1 103 72-176 52-169 (170)
161 PRK09563 rbgA GTPase YlqF; Rev 98.4 8.8E-07 1.9E-11 73.1 7.4 85 93-181 23-109 (287)
162 TIGR00157 ribosome small subun 98.4 1.1E-06 2.3E-11 71.0 7.6 78 93-174 35-119 (245)
163 cd04125 RabA_like RabA-like su 98.4 8.2E-07 1.8E-11 68.1 6.7 106 73-180 48-164 (188)
164 cd01870 RhoA_like RhoA-like su 98.4 7.4E-07 1.6E-11 67.2 6.2 104 72-176 47-173 (175)
165 cd04146 RERG_RasL11_like RERG/ 98.4 6.9E-07 1.5E-11 66.9 5.9 103 73-177 46-163 (165)
166 cd01874 Cdc42 Cdc42 subfamily. 98.4 4.2E-07 9.2E-12 69.3 4.8 102 73-175 48-172 (175)
167 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 1.4E-06 3.1E-11 66.0 7.6 105 73-179 48-166 (170)
168 cd04177 RSR1 RSR1 subgroup. R 98.4 2E-06 4.3E-11 64.7 8.2 104 73-177 48-163 (168)
169 cd01875 RhoG RhoG subfamily. 98.4 4.1E-07 8.8E-12 70.4 4.5 108 72-180 49-179 (191)
170 PRK05306 infB translation init 98.4 1.2E-06 2.7E-11 80.9 8.3 101 73-176 336-450 (787)
171 cd01883 EF1_alpha Eukaryotic e 98.4 2.9E-07 6.2E-12 72.9 3.5 96 72-167 75-194 (219)
172 COG4917 EutP Ethanolamine util 98.4 3.5E-06 7.5E-11 60.8 8.6 99 75-176 38-144 (148)
173 cd04135 Tc10 TC10 subfamily. 98.4 1.8E-06 3.9E-11 65.0 7.6 103 73-176 47-172 (174)
174 PRK14845 translation initiatio 98.4 1.6E-06 3.6E-11 82.0 8.9 105 74-178 526-673 (1049)
175 TIGR00491 aIF-2 translation in 98.4 1.2E-06 2.6E-11 78.8 7.7 104 74-177 69-215 (590)
176 cd04117 Rab15 Rab15 subfamily. 98.4 1.4E-06 3E-11 65.3 6.9 102 73-176 48-160 (161)
177 cd04133 Rop_like Rop subfamily 98.4 7.4E-07 1.6E-11 68.3 5.5 105 72-177 47-172 (176)
178 cd04118 Rab24 Rab24 subfamily. 98.4 1E-06 2.2E-11 67.7 6.3 103 74-178 50-166 (193)
179 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.4 1.5E-06 3.1E-11 67.2 6.9 104 73-179 70-186 (221)
180 PRK11058 GTPase HflX; Provisio 98.4 1.7E-06 3.7E-11 75.1 8.2 97 75-178 246-362 (426)
181 cd04130 Wrch_1 Wrch-1 subfamil 98.4 8.5E-07 1.8E-11 67.1 5.6 101 73-174 47-170 (173)
182 cd04166 CysN_ATPS CysN_ATPS su 98.4 5.6E-07 1.2E-11 70.6 4.8 98 72-169 75-185 (208)
183 PLN03110 Rab GTPase; Provision 98.3 1.6E-06 3.4E-11 68.5 7.1 106 73-180 60-176 (216)
184 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.3 1.9E-06 4.2E-11 69.0 7.6 107 72-179 59-189 (232)
185 PRK03003 GTP-binding protein D 98.3 5.6E-07 1.2E-11 79.1 4.6 102 72-179 84-200 (472)
186 PRK00454 engB GTP-binding prot 98.3 1.6E-06 3.4E-11 66.6 6.3 105 73-179 69-195 (196)
187 cd04103 Centaurin_gamma Centau 98.3 1.9E-06 4E-11 64.7 6.4 100 74-176 47-157 (158)
188 PLN03071 GTP-binding nuclear p 98.3 1.4E-06 3E-11 69.0 5.8 104 72-179 60-173 (219)
189 cd04115 Rab33B_Rab33A Rab33B/R 98.3 3.2E-06 6.9E-11 63.8 7.4 103 73-177 50-168 (170)
190 PRK12736 elongation factor Tu; 98.3 1.7E-06 3.7E-11 74.4 6.3 106 72-178 73-201 (394)
191 PRK05124 cysN sulfate adenylyl 98.3 1.3E-06 2.7E-11 76.9 5.6 98 72-169 105-216 (474)
192 PRK01889 GTPase RsgA; Reviewed 98.3 4.6E-06 1E-10 70.9 8.7 76 95-174 113-193 (356)
193 PRK09554 feoB ferrous iron tra 98.3 2.6E-06 5.7E-11 78.9 7.7 105 71-178 47-168 (772)
194 PF02421 FeoB_N: Ferrous iron 98.3 4.3E-08 9.4E-13 73.8 -3.3 97 72-173 45-156 (156)
195 TIGR02034 CysN sulfate adenyly 98.3 1.6E-06 3.4E-11 74.9 5.6 97 72-168 78-187 (406)
196 KOG1423 Ras-like GTPase ERA [C 98.2 2.1E-06 4.6E-11 70.7 6.0 107 70-178 116-271 (379)
197 PRK12317 elongation factor 1-a 98.2 2.4E-06 5.2E-11 74.1 6.7 97 72-168 82-195 (425)
198 cd04159 Arl10_like Arl10-like 98.2 3.1E-06 6.7E-11 61.9 6.3 101 73-175 43-158 (159)
199 TIGR03594 GTPase_EngA ribosome 98.2 1.9E-06 4.1E-11 74.6 5.6 103 72-180 45-162 (429)
200 PF00025 Arf: ADP-ribosylation 98.2 3.9E-06 8.3E-11 64.1 6.6 103 72-176 56-174 (175)
201 TIGR00483 EF-1_alpha translati 98.2 2.5E-06 5.4E-11 74.0 6.0 97 72-168 83-197 (426)
202 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.3E-06 7.2E-11 62.2 5.9 69 93-165 10-84 (141)
203 TIGR03597 GTPase_YqeH ribosome 98.2 3.5E-06 7.6E-11 71.7 6.6 84 93-177 62-152 (360)
204 cd00876 Ras Ras family. The R 98.2 6.7E-06 1.5E-10 60.5 7.4 102 73-176 46-159 (160)
205 PRK00098 GTPase RsgA; Reviewed 98.2 5E-06 1.1E-10 69.0 7.3 78 94-174 80-163 (298)
206 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.2 2.1E-06 4.5E-11 66.2 4.7 104 72-176 51-178 (182)
207 cd04129 Rho2 Rho2 subfamily. 98.2 4.6E-06 1E-10 64.1 6.6 107 73-180 48-175 (187)
208 PRK00049 elongation factor Tu; 98.2 3.4E-06 7.4E-11 72.6 6.1 106 72-178 73-203 (396)
209 cd01876 YihA_EngB The YihA (En 98.2 5.8E-06 1.3E-10 61.0 6.6 100 75-176 46-169 (170)
210 cd04131 Rnd Rnd subfamily. Th 98.2 3.1E-06 6.8E-11 64.8 5.3 104 72-176 47-174 (178)
211 PRK05506 bifunctional sulfate 98.2 3.3E-06 7.2E-11 76.8 6.2 97 72-168 102-211 (632)
212 PRK10218 GTP-binding protein; 98.2 2.3E-06 4.9E-11 77.3 5.0 109 72-180 66-197 (607)
213 PRK09518 bifunctional cytidyla 98.2 3.4E-06 7.4E-11 77.7 6.2 101 73-179 322-437 (712)
214 KOG0078 GTP-binding protein SE 98.2 7.5E-06 1.6E-10 63.8 7.1 89 91-182 81-178 (207)
215 TIGR03598 GTPase_YsxC ribosome 98.2 2E-06 4.3E-11 65.7 3.9 91 75-167 65-179 (179)
216 KOG1489 Predicted GTP-binding 98.2 3.1E-06 6.8E-11 70.0 5.0 79 94-176 274-365 (366)
217 cd04162 Arl9_Arfrp2_like Arl9/ 98.1 4.7E-06 1E-10 62.8 5.7 101 72-174 42-162 (164)
218 TIGR01394 TypA_BipA GTP-bindin 98.1 2.9E-06 6.4E-11 76.5 5.1 106 72-180 62-193 (594)
219 PRK00093 GTP-binding protein D 98.1 4.9E-06 1.1E-10 72.1 6.2 99 72-176 47-160 (435)
220 cd04167 Snu114p Snu114p subfam 98.1 1.4E-06 3E-11 68.5 1.9 105 73-177 70-210 (213)
221 CHL00071 tufA elongation facto 98.1 2.6E-06 5.6E-11 73.6 3.7 93 72-165 73-180 (409)
222 PLN03127 Elongation factor Tu; 98.1 5.4E-06 1.2E-10 72.4 5.6 103 72-178 122-252 (447)
223 COG0536 Obg Predicted GTPase [ 98.1 1.3E-05 2.9E-10 66.9 7.6 86 95-181 238-336 (369)
224 KOG0084 GTPase Rab1/YPT1, smal 98.1 1.4E-05 3.1E-10 61.7 7.2 91 91-183 78-177 (205)
225 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.2E-06 1.3E-10 68.0 5.4 78 94-175 78-161 (287)
226 PRK12735 elongation factor Tu; 98.1 7.2E-06 1.6E-10 70.6 5.9 106 72-178 73-203 (396)
227 PLN03108 Rab family protein; P 98.1 1.8E-05 3.8E-10 62.2 7.6 103 74-178 55-168 (210)
228 COG3276 SelB Selenocysteine-sp 98.1 9.1E-06 2E-10 69.7 6.1 104 73-178 49-162 (447)
229 cd00154 Rab Rab family. Rab G 98.1 7.5E-06 1.6E-10 59.7 5.0 101 72-174 47-158 (159)
230 KOG1145 Mitochondrial translat 98.0 1.3E-05 2.9E-10 70.5 7.0 98 72-175 199-313 (683)
231 PTZ00141 elongation factor 1- 98.0 7E-06 1.5E-10 71.7 5.2 97 72-168 83-203 (446)
232 PRK04004 translation initiatio 98.0 2E-05 4.4E-10 71.0 8.2 101 75-175 72-215 (586)
233 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.0 1.6E-05 3.6E-10 63.2 6.6 104 72-176 47-174 (222)
234 PRK12288 GTPase RsgA; Reviewed 98.0 2.7E-05 5.8E-10 66.0 7.5 79 95-175 121-205 (347)
235 TIGR00485 EF-Tu translation el 98.0 1E-05 2.2E-10 69.5 4.9 92 72-164 73-179 (394)
236 COG5257 GCD11 Translation init 97.9 1.7E-05 3.7E-10 65.9 5.4 104 76-179 88-203 (415)
237 PRK13796 GTPase YqeH; Provisio 97.9 2.5E-05 5.3E-10 66.7 6.2 81 96-177 71-158 (365)
238 TIGR00450 mnmE_trmE_thdF tRNA 97.9 4E-05 8.6E-10 67.0 7.2 99 72-179 249-361 (442)
239 PLN00043 elongation factor 1-a 97.9 5.6E-05 1.2E-09 66.1 7.9 96 73-168 84-203 (447)
240 cd04168 TetM_like Tet(M)-like 97.9 3.5E-05 7.6E-10 61.9 6.2 62 72-133 62-130 (237)
241 PRK14974 cell division protein 97.8 5.8E-05 1.3E-09 63.7 7.3 150 2-171 158-323 (336)
242 PRK12740 elongation factor G; 97.8 2.3E-05 5E-10 71.7 5.3 64 71-134 57-127 (668)
243 COG1217 TypA Predicted membran 97.8 7.7E-05 1.7E-09 64.7 7.5 108 72-182 66-199 (603)
244 KOG0394 Ras-related GTPase [Ge 97.8 0.00017 3.7E-09 55.4 8.6 101 74-176 58-176 (210)
245 COG0218 Predicted GTPase [Gene 97.8 9.2E-05 2E-09 57.6 7.1 82 96-179 108-198 (200)
246 cd04178 Nucleostemin_like Nucl 97.8 3.4E-05 7.5E-10 59.0 4.5 53 96-150 1-59 (172)
247 COG2403 Predicted GTPase [Gene 97.8 9.3E-05 2E-09 62.5 7.3 80 73-158 224-305 (449)
248 COG0370 FeoB Fe2+ transport sy 97.8 1.8E-05 4E-10 71.1 3.1 106 71-180 47-166 (653)
249 PRK12739 elongation factor G; 97.7 3.3E-05 7.2E-10 71.0 4.7 63 72-134 71-140 (691)
250 KOG0461 Selenocysteine-specifi 97.7 7.1E-05 1.5E-09 62.9 6.1 113 67-179 63-194 (522)
251 PRK00007 elongation factor G; 97.7 5.3E-05 1.1E-09 69.7 5.6 61 71-134 72-142 (693)
252 cd01882 BMS1 Bms1. Bms1 is an 97.7 2.9E-05 6.3E-10 61.8 3.5 90 73-164 82-182 (225)
253 TIGR00231 small_GTP small GTP- 97.7 0.00012 2.6E-09 52.9 6.4 53 119-174 108-160 (161)
254 PLN03126 Elongation factor Tu; 97.7 4.6E-05 1E-09 67.1 4.5 92 72-164 142-248 (478)
255 KOG0093 GTPase Rab3, small G p 97.7 8.8E-05 1.9E-09 55.1 5.2 108 73-182 69-187 (193)
256 cd04104 p47_IIGP_like p47 (47- 97.7 4.6E-05 1E-09 59.2 3.8 108 73-181 51-187 (197)
257 COG2895 CysN GTPases - Sulfate 97.7 3.4E-05 7.3E-10 64.8 3.0 93 73-167 85-192 (431)
258 KOG0076 GTP-binding ADP-ribosy 97.6 3.1E-05 6.7E-10 58.9 2.2 86 93-180 91-189 (197)
259 cd01886 EF-G Elongation factor 97.6 4.4E-05 9.6E-10 62.5 3.3 89 71-162 61-159 (270)
260 TIGR00064 ftsY signal recognit 97.6 0.00029 6.2E-09 57.8 7.9 148 3-171 91-261 (272)
261 KOG0072 GTP-binding ADP-ribosy 97.6 0.00015 3.3E-09 53.7 5.6 86 92-179 83-180 (182)
262 PRK10416 signal recognition pa 97.6 0.00039 8.4E-09 58.3 8.3 149 3-171 133-303 (318)
263 KOG0075 GTP-binding ADP-ribosy 97.6 0.00063 1.4E-08 50.6 8.2 86 93-180 87-184 (186)
264 PRK00741 prfC peptide chain re 97.5 0.00019 4E-09 64.1 6.3 63 72-134 77-146 (526)
265 cd01896 DRG The developmentall 97.5 0.00019 4.2E-09 57.4 5.8 50 120-178 177-226 (233)
266 KOG1191 Mitochondrial GTPase [ 97.5 0.00013 2.8E-09 63.5 5.0 116 63-178 305-450 (531)
267 PRK13351 elongation factor G; 97.5 0.00018 3.8E-09 66.2 6.1 63 72-134 71-140 (687)
268 KOG0079 GTP-binding protein H- 97.5 0.00021 4.6E-09 53.2 5.1 107 72-181 55-172 (198)
269 KOG1144 Translation initiation 97.5 0.0002 4.2E-09 65.3 5.8 106 73-179 539-688 (1064)
270 PF03029 ATP_bind_1: Conserved 97.5 4.2E-05 9.2E-10 61.5 1.1 103 73-178 90-237 (238)
271 PF00071 Ras: Ras family; Int 97.4 0.00062 1.3E-08 50.3 7.0 104 71-177 45-160 (162)
272 cd01885 EF2 EF2 (for archaea a 97.4 0.00018 3.8E-09 57.3 3.6 60 73-132 72-138 (222)
273 COG1162 Predicted GTPases [Gen 97.3 0.00097 2.1E-08 55.2 7.7 77 95-175 80-164 (301)
274 cd01899 Ygr210 Ygr210 subfamil 97.3 0.00025 5.5E-09 59.4 4.3 57 119-180 214-271 (318)
275 KOG0080 GTPase Rab18, small G 97.3 0.00046 1E-08 52.1 4.8 102 72-175 58-171 (209)
276 TIGR00503 prfC peptide chain r 97.3 0.00065 1.4E-08 60.7 6.6 63 71-133 77-146 (527)
277 KOG0073 GTP-binding ADP-ribosy 97.3 0.0008 1.7E-08 50.9 5.9 106 71-178 57-178 (185)
278 KOG0083 GTPase Rab26/Rab37, sm 97.3 0.00018 3.9E-09 52.6 2.3 89 91-181 67-163 (192)
279 TIGR00484 EF-G translation elo 97.2 0.00056 1.2E-08 63.0 5.8 90 71-163 72-171 (689)
280 KOG0098 GTPase Rab2, small G p 97.2 0.0006 1.3E-08 52.6 4.8 103 71-175 52-165 (216)
281 COG5256 TEF1 Translation elong 97.2 0.00066 1.4E-08 58.2 5.3 97 73-169 84-202 (428)
282 KOG0458 Elongation factor 1 al 97.0 0.003 6.5E-08 56.2 7.8 98 72-169 253-373 (603)
283 cd04170 EF-G_bact Elongation f 96.9 0.00039 8.4E-09 56.6 1.5 96 72-171 62-166 (268)
284 COG5258 GTPBP1 GTPase [General 96.9 0.0017 3.8E-08 55.4 5.3 82 95-178 227-339 (527)
285 COG2229 Predicted GTPase [Gene 96.9 0.0049 1.1E-07 47.4 7.3 100 74-176 68-176 (187)
286 KOG0395 Ras-related GTPase [Ge 96.9 0.0047 1E-07 48.2 7.3 104 73-179 50-166 (196)
287 COG1084 Predicted GTPase [Gene 96.9 0.0023 4.9E-08 53.5 5.7 100 73-176 214-334 (346)
288 KOG0070 GTP-binding ADP-ribosy 96.8 0.0057 1.2E-07 46.9 7.1 104 73-178 60-178 (181)
289 COG1163 DRG Predicted GTPase [ 96.8 0.0026 5.7E-08 53.1 5.6 50 120-178 240-289 (365)
290 COG1161 Predicted GTPases [Gen 96.8 0.0042 9.2E-08 52.1 6.5 78 94-174 34-113 (322)
291 PTZ00132 GTP-binding nuclear p 96.7 0.0051 1.1E-07 48.1 6.6 101 72-178 56-168 (215)
292 KOG1424 Predicted GTP-binding 96.7 0.002 4.4E-08 56.6 4.2 65 94-162 174-244 (562)
293 KOG0087 GTPase Rab11/YPT3, sma 96.6 0.0053 1.2E-07 48.2 5.6 105 71-177 60-175 (222)
294 COG0050 TufB GTPases - transla 96.6 0.0089 1.9E-07 49.5 7.0 80 96-177 100-193 (394)
295 KOG0097 GTPase Rab14, small G 96.6 0.028 6E-07 41.7 8.9 83 93-177 82-173 (215)
296 TIGR00176 mobB molybdopterin-g 96.6 0.0091 2E-07 44.8 6.6 74 2-83 17-99 (155)
297 KOG2484 GTPase [General functi 96.6 0.0034 7.3E-08 53.7 4.5 58 94-153 146-209 (435)
298 TIGR01425 SRP54_euk signal rec 96.5 0.014 3.1E-07 50.8 8.4 145 3-169 119-281 (429)
299 cd04169 RF3 RF3 subfamily. Pe 96.5 0.0048 1E-07 50.4 5.2 64 71-134 68-138 (267)
300 KOG0081 GTPase Rab27, small G 96.5 0.0074 1.6E-07 45.6 5.4 82 97-180 93-187 (219)
301 KOG0095 GTPase Rab30, small G 96.3 0.0024 5.1E-08 47.7 2.1 101 73-175 55-166 (213)
302 PRK09602 translation-associate 96.3 0.0042 9.1E-08 53.6 3.8 56 119-180 217-273 (396)
303 KOG0460 Mitochondrial translat 96.2 0.0083 1.8E-07 50.6 4.8 82 96-178 142-245 (449)
304 PRK07560 elongation factor EF- 96.2 0.0095 2.1E-07 55.3 5.7 60 73-132 86-152 (731)
305 COG3640 CooC CO dehydrogenase 96.2 0.0019 4.1E-08 51.7 0.9 59 71-132 131-198 (255)
306 KOG0393 Ras-related small GTPa 96.2 0.0087 1.9E-07 46.7 4.5 101 74-177 53-178 (198)
307 KOG0086 GTPase Rab4, small G p 96.1 0.019 4E-07 43.2 5.8 81 92-174 79-167 (214)
308 COG0552 FtsY Signal recognitio 96.0 0.022 4.7E-07 47.8 6.5 148 2-172 157-329 (340)
309 KOG0466 Translation initiation 96.0 0.007 1.5E-07 50.4 3.5 58 121-178 181-241 (466)
310 KOG4252 GTP-binding protein [S 95.8 0.0097 2.1E-07 45.8 3.2 87 91-179 89-182 (246)
311 KOG0071 GTP-binding ADP-ribosy 95.7 0.027 5.9E-07 41.8 5.0 81 96-178 86-178 (180)
312 KOG0091 GTPase Rab39, small G 95.6 0.05 1.1E-06 41.4 6.3 114 63-178 47-173 (213)
313 KOG3883 Ras family small GTPas 95.5 0.064 1.4E-06 40.4 6.5 104 73-178 59-175 (198)
314 PRK11889 flhF flagellar biosyn 95.4 0.047 1E-06 47.3 6.2 96 63-168 310-418 (436)
315 KOG4423 GTP-binding protein-li 95.2 0.2 4.4E-06 38.9 8.6 86 91-176 95-192 (229)
316 PF00448 SRP54: SRP54-type pro 95.2 0.017 3.6E-07 45.1 2.8 145 3-169 20-182 (196)
317 KOG2423 Nucleolar GTPase [Gene 95.0 0.11 2.5E-06 44.8 7.5 85 94-181 213-303 (572)
318 COG1100 GTPase SAR1 and relate 94.9 0.061 1.3E-06 41.7 5.3 107 73-179 53-186 (219)
319 PRK10867 signal recognition pa 94.9 0.11 2.4E-06 45.4 7.2 145 3-169 119-282 (433)
320 PLN00116 translation elongatio 94.8 0.024 5.2E-07 53.5 3.2 57 76-132 100-163 (843)
321 cd03115 SRP The signal recogni 94.6 0.13 2.9E-06 38.6 6.4 118 3-134 19-154 (173)
322 cd01852 AIG1 AIG1 (avrRpt2-ind 94.5 0.12 2.6E-06 39.8 6.0 104 72-179 47-185 (196)
323 PRK12726 flagellar biosynthesi 94.5 0.21 4.6E-06 43.1 7.9 146 3-168 225-383 (407)
324 PTZ00416 elongation factor 2; 94.5 0.042 9.1E-07 51.9 4.0 60 73-132 91-157 (836)
325 cd04105 SR_beta Signal recogni 94.3 0.027 5.9E-07 43.9 2.0 63 72-134 46-124 (203)
326 PRK00771 signal recognition pa 94.2 0.13 2.8E-06 45.1 6.2 88 73-169 175-274 (437)
327 COG0480 FusA Translation elong 93.9 0.067 1.4E-06 49.4 4.0 60 74-134 76-143 (697)
328 KOG0448 Mitofusin 1 GTPase, in 93.8 0.064 1.4E-06 48.9 3.5 86 75-161 207-309 (749)
329 COG0541 Ffh Signal recognition 93.8 0.57 1.2E-05 40.9 9.1 145 2-169 118-281 (451)
330 KOG0465 Mitochondrial elongati 93.4 0.35 7.7E-06 43.8 7.4 62 72-134 102-171 (721)
331 PRK14489 putative bifunctional 93.3 0.22 4.7E-06 42.5 5.9 77 1-83 222-308 (366)
332 PRK14494 putative molybdopteri 93.2 0.38 8.2E-06 38.5 6.7 72 2-83 19-95 (229)
333 PRK06731 flhF flagellar biosyn 93.2 0.08 1.7E-06 43.4 2.9 96 63-168 144-252 (270)
334 TIGR00490 aEF-2 translation el 92.9 0.086 1.9E-06 49.0 3.1 63 71-133 83-152 (720)
335 TIGR00959 ffh signal recogniti 92.9 0.58 1.3E-05 40.9 7.9 145 3-169 118-281 (428)
336 KOG1490 GTP-binding protein CR 92.8 0.17 3.8E-06 44.8 4.6 94 74-171 215-334 (620)
337 KOG3905 Dynein light intermedi 92.7 0.34 7.3E-06 41.0 5.9 59 118-176 221-288 (473)
338 PRK14722 flhF flagellar biosyn 92.5 0.31 6.8E-06 41.8 5.7 90 71-168 213-322 (374)
339 KOG0780 Signal recognition par 92.5 0.08 1.7E-06 45.5 2.0 145 2-169 119-282 (483)
340 KOG1143 Predicted translation 92.4 0.26 5.7E-06 42.4 5.0 113 65-179 240-389 (591)
341 KOG0468 U5 snRNP-specific prot 92.3 0.041 8.9E-07 50.2 0.1 60 73-132 196-262 (971)
342 cd03110 Fer4_NifH_child This p 92.2 0.13 2.8E-06 38.9 2.8 75 71-149 90-170 (179)
343 KOG0090 Signal recognition par 92.2 0.28 6E-06 38.9 4.6 81 95-176 109-237 (238)
344 cd04102 RabL3 RabL3 (Rab-like3 92.2 0.16 3.5E-06 39.7 3.3 91 73-164 53-176 (202)
345 PRK05703 flhF flagellar biosyn 91.9 0.53 1.2E-05 41.1 6.6 89 72-170 298-401 (424)
346 PF06858 NOG1: Nucleolar GTP-b 91.8 0.09 2E-06 32.8 1.2 37 94-130 13-58 (58)
347 smart00053 DYNc Dynamin, GTPas 91.8 0.14 3E-06 41.3 2.5 61 74-134 125-207 (240)
348 PRK12723 flagellar biosynthesi 91.5 1.2 2.6E-05 38.5 8.2 92 71-170 252-356 (388)
349 PF08438 MMR_HSR1_C: GTPase of 91.1 0.2 4.4E-06 35.4 2.5 32 125-161 1-32 (109)
350 KOG0410 Predicted GTP binding 90.5 0.13 2.8E-06 43.3 1.3 97 73-181 225-344 (410)
351 KOG0467 Translation elongation 89.9 0.23 5E-06 46.0 2.5 58 72-130 70-135 (887)
352 PRK12727 flagellar biosynthesi 89.3 0.65 1.4E-05 41.8 4.8 88 72-169 427-527 (559)
353 KOG1707 Predicted Ras related/ 89.2 0.42 9.2E-06 43.0 3.5 82 92-176 77-173 (625)
354 cd04170 EF-G_bact Elongation f 88.8 0.54 1.2E-05 38.1 3.7 29 151-179 239-267 (268)
355 KOG0077 Vesicle coat complex C 88.8 0.15 3.3E-06 38.8 0.4 81 94-176 87-191 (193)
356 PRK12724 flagellar biosynthesi 88.1 0.64 1.4E-05 40.6 3.8 90 71-168 297-400 (432)
357 PRK14723 flhF flagellar biosyn 88.1 0.52 1.1E-05 44.1 3.5 91 72-170 262-367 (767)
358 PF05783 DLIC: Dynein light in 88.0 1.2 2.7E-05 39.4 5.6 61 118-178 195-264 (472)
359 COG1419 FlhF Flagellar GTP-bin 87.8 1.2 2.6E-05 38.6 5.3 89 72-168 280-379 (407)
360 KOG2485 Conserved ATP/GTP bind 87.0 1.2 2.5E-05 37.4 4.5 77 94-175 46-128 (335)
361 KOG1954 Endocytosis/signaling 86.9 0.76 1.7E-05 39.6 3.5 68 75-144 148-234 (532)
362 KOG0074 GTP-binding ADP-ribosy 86.8 0.1 2.3E-06 38.8 -1.4 109 72-182 49-183 (185)
363 TIGR03172 probable selenium-de 86.5 3.8 8.2E-05 32.9 7.2 42 63-104 87-136 (232)
364 PRK14491 putative bifunctional 85.5 2.2 4.8E-05 39.0 6.0 77 1-83 27-114 (597)
365 PLN00023 GTP-binding protein; 85.0 0.62 1.3E-05 39.4 2.1 62 73-134 82-166 (334)
366 cd01850 CDC_Septin CDC/Septin. 83.9 1.4 3E-05 36.1 3.7 63 95-160 115-184 (276)
367 KOG1487 GTP-binding protein DR 83.2 1.3 2.9E-05 36.4 3.2 53 118-179 230-282 (358)
368 TIGR02836 spore_IV_A stage IV 82.6 11 0.00023 33.4 8.5 75 95-173 145-232 (492)
369 KOG2486 Predicted GTPase [Gene 81.9 0.75 1.6E-05 38.0 1.3 80 98-177 223-315 (320)
370 KOG0463 GTP-binding protein GP 81.9 4.1 8.9E-05 35.3 5.7 54 118-173 272-353 (641)
371 COG1763 MobB Molybdopterin-gua 81.6 3.3 7.3E-05 31.3 4.7 73 1-80 19-99 (161)
372 cd00066 G-alpha G protein alph 79.0 7 0.00015 32.7 6.3 85 93-177 183-310 (317)
373 cd01886 EF-G Elongation factor 78.3 2.4 5.1E-05 34.7 3.2 29 151-179 241-269 (270)
374 KOG0781 Signal recognition par 78.2 2.4 5.3E-05 37.6 3.3 90 63-159 457-565 (587)
375 COG3596 Predicted GTPase [Gene 77.7 7.7 0.00017 32.1 5.9 107 73-179 86-223 (296)
376 KOG0464 Elongation factor G [T 77.6 6.6 0.00014 34.5 5.7 63 71-134 99-169 (753)
377 cd03116 MobB Molybdenum is an 75.4 14 0.0003 27.7 6.5 77 2-83 19-102 (159)
378 PF00350 Dynamin_N: Dynamin fa 75.3 0.86 1.9E-05 33.7 -0.1 57 73-129 100-168 (168)
379 PRK10751 molybdopterin-guanine 75.3 12 0.00025 28.7 6.0 34 2-35 24-64 (173)
380 smart00275 G_alpha G protein a 74.7 11 0.00025 31.8 6.5 85 93-177 206-333 (342)
381 PRK14721 flhF flagellar biosyn 73.6 5 0.00011 35.1 4.1 91 70-170 266-370 (420)
382 PRK06995 flhF flagellar biosyn 73.5 5.2 0.00011 35.6 4.2 94 67-170 328-435 (484)
383 cd04169 RF3 RF3 subfamily. Pe 72.5 4.5 9.8E-05 33.0 3.4 29 151-179 238-266 (267)
384 PRK14490 putative bifunctional 70.8 15 0.00032 31.4 6.3 73 2-83 23-102 (369)
385 PTZ00258 GTP-binding protein; 69.2 9.1 0.0002 33.2 4.7 45 119-164 220-266 (390)
386 PRK14493 putative bifunctional 68.7 18 0.00039 29.7 6.2 73 2-83 19-97 (274)
387 PF08477 Miro: Miro-like prote 65.9 0.81 1.8E-05 31.7 -2.0 55 76-130 52-119 (119)
388 PRK13505 formate--tetrahydrofo 63.6 22 0.00047 32.3 6.0 58 117-178 370-429 (557)
389 PF02606 LpxK: Tetraacyldisacc 63.1 25 0.00055 29.6 6.1 66 63-134 118-192 (326)
390 KOG1673 Ras GTPases [General f 59.5 27 0.00059 26.6 5.0 80 96-177 94-185 (205)
391 PRK00652 lpxK tetraacyldisacch 58.0 24 0.00052 29.8 5.1 116 2-129 69-201 (325)
392 cd01896 DRG The developmentall 57.4 66 0.0014 25.4 7.4 99 72-175 45-172 (233)
393 PF07015 VirC1: VirC1 protein; 55.7 7.5 0.00016 31.2 1.6 94 71-171 81-187 (231)
394 PF04670 Gtr1_RagA: Gtr1/RagA 54.5 14 0.0003 29.6 3.1 75 94-173 76-171 (232)
395 KOG0082 G-protein alpha subuni 54.3 11 0.00025 32.1 2.6 85 93-177 217-343 (354)
396 PF00919 UPF0004: Uncharacteri 51.2 59 0.0013 22.2 5.4 53 119-171 35-88 (98)
397 KOG0459 Polypeptide release fa 51.1 28 0.00061 30.5 4.5 51 121-171 219-279 (501)
398 COG0012 Predicted GTPase, prob 51.0 27 0.00058 30.1 4.3 43 119-164 206-250 (372)
399 cd02034 CooC The accessory pro 48.9 30 0.00064 24.4 3.7 29 71-101 84-115 (116)
400 KOG1486 GTP-binding protein DR 48.9 51 0.0011 27.3 5.4 50 121-179 240-289 (364)
401 KOG1534 Putative transcription 48.2 15 0.00032 29.5 2.2 18 117-134 162-179 (273)
402 KOG0447 Dynamin-like GTP bindi 47.9 39 0.00084 31.1 4.9 64 118-181 478-547 (980)
403 PF09439 SRPRB: Signal recogni 47.2 30 0.00064 26.7 3.7 63 72-134 47-127 (181)
404 cd02040 NifH NifH gene encodes 46.5 24 0.00052 28.1 3.3 35 72-106 115-153 (270)
405 COG4108 PrfC Peptide chain rel 45.8 18 0.00038 32.1 2.5 67 78-147 85-162 (528)
406 PRK14495 putative molybdopteri 45.0 71 0.0015 28.3 6.1 76 1-82 18-101 (452)
407 PF03205 MobB: Molybdopterin g 44.8 1.2E+02 0.0026 22.0 6.8 33 2-35 18-58 (140)
408 PF00455 DeoRC: DeoR C termina 42.4 91 0.002 23.2 5.7 95 2-108 32-140 (161)
409 PF04548 AIG1: AIG1 family; I 42.2 37 0.0008 26.4 3.7 105 72-182 47-190 (212)
410 KOG0096 GTPase Ran/TC4/GSP1 (n 41.7 11 0.00024 29.5 0.6 54 120-177 115-168 (216)
411 TIGR02016 BchX chlorophyllide 41.1 24 0.00052 29.2 2.5 34 72-105 121-158 (296)
412 KOG4584 Uncharacterized conser 40.3 95 0.0021 26.1 5.8 27 5-31 191-226 (348)
413 TIGR01007 eps_fam capsular exo 40.3 22 0.00048 27.2 2.1 62 72-133 126-194 (204)
414 PF01656 CbiA: CobQ/CobB/MinD/ 40.1 20 0.00043 26.8 1.8 61 73-134 94-163 (195)
415 PF14331 ImcF-related_N: ImcF- 40.0 50 0.0011 26.8 4.2 17 118-134 68-84 (266)
416 TIGR00484 EF-G translation elo 39.2 28 0.00061 32.3 3.0 30 151-180 252-281 (689)
417 cd02117 NifH_like This family 39.2 39 0.00085 26.1 3.4 35 72-106 115-153 (212)
418 PF07846 Metallothio_Cad: Meta 37.0 16 0.00035 17.6 0.5 6 45-50 15-20 (21)
419 KOG1249 Predicted GTPases [Gen 36.7 47 0.001 30.1 3.7 54 122-177 140-210 (572)
420 PF00503 G-alpha: G-protein al 36.5 21 0.00046 30.6 1.6 104 72-175 234-387 (389)
421 COG1149 MinD superfamily P-loo 36.3 29 0.00062 28.7 2.2 58 74-132 164-227 (284)
422 PRK10411 DNA-binding transcrip 36.2 1.5E+02 0.0032 23.7 6.3 113 3-128 107-233 (240)
423 TIGR01969 minD_arch cell divis 36.2 19 0.00041 28.2 1.2 60 72-132 107-173 (251)
424 PRK13231 nitrogenase reductase 35.8 46 0.001 26.6 3.4 35 72-106 112-150 (264)
425 TIGR01287 nifH nitrogenase iro 35.7 49 0.0011 26.6 3.6 35 72-106 114-152 (275)
426 KOG0465 Mitochondrial elongati 35.7 33 0.00071 31.7 2.7 40 140-179 267-309 (721)
427 cd02038 FleN-like FleN is a me 35.7 19 0.00042 25.9 1.1 58 74-132 45-110 (139)
428 PF01548 DEDD_Tnp_IS110: Trans 35.0 36 0.00078 24.4 2.4 67 64-142 37-105 (144)
429 cd02032 Bchl_like This family 33.2 51 0.0011 26.4 3.3 34 72-106 114-150 (267)
430 COG4565 CitB Response regulato 33.0 63 0.0014 25.8 3.5 51 13-81 2-54 (224)
431 PRK13233 nifH nitrogenase redu 33.0 55 0.0012 26.3 3.4 35 72-106 117-155 (275)
432 PRK13235 nifH nitrogenase redu 32.3 58 0.0012 26.2 3.4 35 72-106 116-154 (274)
433 COG2201 CheB Chemotaxis respon 32.2 1.3E+02 0.0028 25.8 5.5 22 152-173 74-95 (350)
434 KOG0464 Elongation factor G [T 32.1 22 0.00049 31.3 1.0 32 151-182 291-322 (753)
435 PRK13230 nitrogenase reductase 32.1 46 0.001 26.9 2.8 35 72-106 115-153 (279)
436 PRK13232 nifH nitrogenase redu 32.1 62 0.0014 26.0 3.6 33 72-105 115-152 (273)
437 PRK13234 nifH nitrogenase redu 32.1 53 0.0012 27.0 3.2 35 72-106 118-156 (295)
438 cd06919 Asp_decarbox Aspartate 32.0 47 0.001 23.5 2.4 42 7-48 4-52 (111)
439 CHL00072 chlL photochlorophyll 31.9 72 0.0016 26.2 4.0 34 72-106 114-150 (290)
440 PRK09601 GTP-binding protein Y 31.7 77 0.0017 27.2 4.2 41 119-162 199-241 (364)
441 PRK05449 aspartate alpha-decar 31.1 68 0.0015 23.3 3.2 42 7-48 5-53 (126)
442 TIGR00347 bioD dethiobiotin sy 30.9 39 0.00085 24.8 2.1 12 72-83 98-109 (166)
443 COG4536 CorB Putative Mg2+ and 30.4 48 0.001 28.7 2.7 20 3-22 289-308 (423)
444 PHA02518 ParA-like protein; Pr 29.8 33 0.00071 26.0 1.5 35 71-107 74-111 (211)
445 TIGR00682 lpxK tetraacyldisacc 29.7 70 0.0015 26.8 3.6 62 64-131 112-182 (311)
446 TIGR00991 3a0901s02IAP34 GTP-b 29.5 58 0.0013 27.4 3.0 63 72-134 84-168 (313)
447 TIGR00223 panD L-aspartate-alp 29.4 77 0.0017 23.0 3.2 42 7-48 5-53 (126)
448 TIGR01968 minD_bact septum sit 29.2 29 0.00062 27.3 1.2 59 72-131 110-175 (261)
449 PRK00090 bioD dithiobiotin syn 28.4 43 0.00094 25.9 2.0 17 72-89 102-118 (222)
450 PRK10906 DNA-binding transcrip 28.4 2.7E+02 0.0058 22.4 6.7 115 3-128 105-232 (252)
451 CHL00175 minD septum-site dete 27.8 40 0.00086 27.2 1.8 33 73-106 126-160 (281)
452 COG3947 Response regulator con 27.7 60 0.0013 27.4 2.7 30 140-169 60-89 (361)
453 KOG4101 Cysteine-rich hydropho 27.6 17 0.00037 26.9 -0.4 15 40-54 92-107 (175)
454 TIGR01281 DPOR_bchL light-inde 26.9 68 0.0015 25.6 3.0 33 72-105 114-149 (268)
455 PF06260 DUF1024: Protein of u 26.6 38 0.00083 22.4 1.2 25 155-179 11-35 (82)
456 PRK09802 DNA-binding transcrip 25.9 2.8E+02 0.0061 22.5 6.4 93 3-108 120-227 (269)
457 PRK13185 chlL protochlorophyll 25.6 77 0.0017 25.3 3.1 34 72-106 116-152 (270)
458 PRK10818 cell division inhibit 24.7 40 0.00087 26.9 1.3 35 72-107 112-148 (270)
459 PF14606 Lipase_GDSL_3: GDSL-l 24.4 2.6E+02 0.0056 21.5 5.6 44 137-180 78-131 (178)
460 PF09547 Spore_IV_A: Stage IV 24.1 3.4E+02 0.0073 24.3 6.7 58 117-179 178-235 (492)
461 COG3688 Predicted RNA-binding 23.9 3E+02 0.0066 21.0 5.6 59 98-161 51-109 (173)
462 PF01926 MMR_HSR1: 50S ribosom 23.1 25 0.00054 24.0 -0.2 57 72-128 45-116 (116)
463 TIGR03602 streptolysinS bacter 22.9 32 0.00069 20.6 0.2 7 42-48 20-26 (56)
464 TIGR03590 PseG pseudaminic aci 22.3 3.6E+02 0.0079 21.7 6.5 68 3-83 22-90 (279)
465 COG1253 TlyC Hemolysins and re 22.2 67 0.0015 28.0 2.2 21 2-22 291-312 (429)
466 KOG0469 Elongation factor 2 [T 21.5 25 0.00054 31.9 -0.6 59 73-132 97-163 (842)
467 PRK03094 hypothetical protein; 21.4 1.3E+02 0.0027 20.1 2.9 55 17-83 4-65 (80)
468 PRK11573 hypothetical protein; 21.2 70 0.0015 27.8 2.1 21 2-22 274-295 (413)
469 COG0621 MiaB 2-methylthioadeni 21.2 1.5E+02 0.0033 26.2 4.1 51 119-170 39-89 (437)
470 PF10842 DUF2642: Protein of u 21.0 1.6E+02 0.0034 18.8 3.1 12 72-83 40-51 (66)
471 PRK13507 formate--tetrahydrofo 20.9 1.9E+02 0.0042 26.5 4.8 60 117-178 399-458 (587)
472 PF06564 YhjQ: YhjQ protein; 20.8 1.4E+02 0.003 24.2 3.6 67 63-134 107-178 (243)
473 cd00477 FTHFS Formyltetrahydro 20.4 1.9E+02 0.0041 26.2 4.6 58 117-178 354-413 (524)
No 1
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=100.00 E-value=8.1e-33 Score=211.57 Aligned_cols=165 Identities=47% Similarity=0.705 Sum_probs=147.4
Q ss_pred CHHHHHHHhcCCcEEEEEcccCCchhHHHHHh-cCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc-CCcEE
Q 029893 1 MLALCKFLRDKYSLAAVTNDIFTKEDGEFLMR-NGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF-KADLL 77 (186)
Q Consensus 1 ~~~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~-~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~-~~D~i 77 (186)
|+++++.|++++++|||.||+-+.-|++++.+ .|. +++.+.+|- | |+ |.++.+.++.+|..+. ..|++
T Consensus 30 ie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~----~i~~v~TG~~C-H~----da~m~~~ai~~l~~~~~~~Dll 100 (202)
T COG0378 30 IEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGE----PIIGVETGKGC-HL----DASMNLEAIEELVLDFPDLDLL 100 (202)
T ss_pred HHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCC----eeEEeccCCcc-CC----cHHHHHHHHHHHhhcCCcCCEE
Confidence 46889999988999999999999999999998 554 799999995 7 97 7777779999887554 37999
Q ss_pred EEecCCCeeEEeeeeecCc-eEEEEEeCCCCCCCccC-CCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCE
Q 029893 78 LCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRK-GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPF 155 (186)
Q Consensus 78 iIEtsG~~l~~~~~~~~ad-~~v~VvDa~~~~~~~~~-~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i 155 (186)
|||+.| |+++|+++++.| +.|+|+|+++|++.+.+ +|..+. ||++|+||+||++.....++.+.+..++.||.+|+
T Consensus 101 ~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~i 178 (202)
T COG0378 101 FIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPI 178 (202)
T ss_pred EEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCE
Confidence 999999 999999999887 88999999999999998 665555 99999999999998667789999999999999999
Q ss_pred EEEeccCCCCHHHHHHHHHHH
Q 029893 156 IFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 156 ~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+++|++||+|+++|++|+...
T Consensus 179 i~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 179 IFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred EEEeCCCCcCHHHHHHHHHhh
Confidence 999999999999999999865
No 2
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.97 E-value=1.9e-30 Score=211.78 Aligned_cols=165 Identities=22% Similarity=0.229 Sum_probs=136.9
Q ss_pred HHHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEEEEec
Q 029893 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCES 81 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEt 81 (186)
.++++.+....++|||.||+++..|+++|+..|. +++++++||+||+ .+ .+..+++..|. ..+.|++|||+
T Consensus 122 ~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi~tG~~Chl-~a---~mv~~Al~~L~-~~~~d~liIEn 192 (290)
T PRK10463 122 TETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQVNTGKGCHL-DA---QMIADAAPRLP-LDDNGILFIEN 192 (290)
T ss_pred HHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEecCCCCCcC-cH---HHHHHHHHHHh-hcCCcEEEEEC
Confidence 5667777766899999999995559999998876 6899999995554 12 33336777764 56889999999
Q ss_pred CCCeeEEeeeeec-CceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEec
Q 029893 82 GGDNLAANFSREL-ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 160 (186)
Q Consensus 82 sG~~l~~~~~~~~-ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa 160 (186)
+| ++++|..+++ .+..++++++.++++++.+|+.+++.||++|+||+||++....+++.+.+.+++++|.++|+++||
T Consensus 193 vG-nLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA 271 (290)
T PRK10463 193 VG-NLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISA 271 (290)
T ss_pred CC-CccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 99 6778876655 356679999999988888999999999999999999997422567888889999999999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 029893 161 KHGLGVEEIVNHILQA 176 (186)
Q Consensus 161 ~~g~gi~~l~~~i~~~ 176 (186)
++|+|+++|++|+.+.
T Consensus 272 ~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 272 TSGEGMDQWLNWLETQ 287 (290)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999874
No 3
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.97 E-value=7.4e-32 Score=223.97 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCcEEEEEcccC-CchhH-HHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhh-hcCCcEE
Q 029893 2 LALCKFLRDKYSLAAVTNDIF-TKEDG-EFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSN-LFKADLL 77 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g-~~iD~-~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~-~~~~D~i 77 (186)
+|++++.. ++|+|||+|||| ++||+ .++.+.+. ++.||+||| ||++ |+|+.. ++..|.+ +..||+|
T Consensus 19 ~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~~~~e----~~~El~nGCICCT~--r~dl~~---~~~~L~~~~~~~D~i 88 (323)
T COG0523 19 NHLLANRD-GKKIAVIVNEFGEVGIDGGALLSDTGE----EVVELTNGCICCTV--RDDLLP---ALERLLRRRDRPDRL 88 (323)
T ss_pred HHHHhccC-CCcEEEEEecCccccccCCCccccCCc----cEEEeCCceEEEec--cchhHH---HHHHHHhccCCCCEE
Confidence 45555444 699999999999 99995 77776544 799999999 9994 877764 4444444 4579999
Q ss_pred EEecCCCeeEEe------eee--ec-----CceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 78 LCESGGDNLAAN------FSR--EL-----ADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 78 iIEtsG~~l~~~------~~~--~~-----ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+||||| ++.| +.. .. -|.+|+|||+.+..... ..+..|++.||+||+||+|++++ ++++
T Consensus 89 vIEtTG--lA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~Dlv~~--~~l~ 164 (323)
T COG0523 89 VIETTG--LADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDLVDA--EELE 164 (323)
T ss_pred EEeCCC--CCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecccCCCH--HHHH
Confidence 999999 4433 211 11 26689999998865422 33557899999999999999998 6788
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
.+++.++++||.|+|+.+|. .+.+..+++.
T Consensus 165 ~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 165 ALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 99999999999999999997 5666665554
No 4
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.96 E-value=1.9e-29 Score=197.36 Aligned_cols=174 Identities=55% Similarity=0.847 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEec-cCCC-cccCCcccccccCcchhHhhhhh-cCCcEEE
Q 029893 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGG-CPHAAIREDISINLGPLEELSNL-FKADLLL 78 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l-~~Gc-cc~l~~r~d~~~~~~~l~~l~~~-~~~D~ii 78 (186)
.++++.+....+++++.||++...|+.++.+.+..+.++++++ .+|| ||. +|+|+...+.+|.++..+ .++|++|
T Consensus 19 ~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~L~~l~~~~~~~D~ii 96 (199)
T TIGR00101 19 EALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTA--IREDASMNLEAVAEMEARFPPLEMVF 96 (199)
T ss_pred HHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccce--eccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 3455666655789999999998789998887776565667765 5677 554 588887666777777533 4799999
Q ss_pred EecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEE
Q 029893 79 CESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 158 (186)
Q Consensus 79 IEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~ 158 (186)
|||+|+++.+++.+..+|.+|+|+|+.+++..+..+..|+..||++++||+|+.+...++++.+.+.++.+||.++++++
T Consensus 97 IEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (199)
T TIGR00101 97 IESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFT 176 (199)
T ss_pred EECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEE
Confidence 99999777666666668999999999998876655567899999999999999863225788888899999999999999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 029893 159 QVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 159 Sa~~g~gi~~l~~~i~~~~ 177 (186)
||++|+|+++|++++.+++
T Consensus 177 Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 177 NLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 9999999999999998764
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.95 E-value=9.2e-29 Score=190.34 Aligned_cols=142 Identities=26% Similarity=0.382 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCcEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc--CCcEE
Q 029893 2 LALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF--KADLL 77 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~--~~D~i 77 (186)
.++++...+++|+|||+|||| +++|+.++++.|. .+++|++|| ||++ ++|+. .++.++...+ +||+|
T Consensus 18 ~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~----~v~~l~~gcicc~~--~~~~~---~~l~~l~~~~~~~~d~I 88 (178)
T PF02492_consen 18 NHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGV----PVVELNNGCICCTL--RDDLV---EALRRLLREYEERPDRI 88 (178)
T ss_dssp HHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-----EEEEECTTTESS-T--TS-HH---HHHHHHCCCCHGC-SEE
T ss_pred HHHHHHhcCCceeEEEEccccccccchhhhcccce----EEEEecCCCccccc--HHHHH---HHHHHHHHhcCCCcCEE
Confidence 456664445699999999999 9999999998766 699999999 9985 55554 6777777666 89999
Q ss_pred EEecCCCeeEEeeee---------e-cCceEEEEEeCCCCCC---CccCCCCCCCceeEEEEecCCCCCcccc-cHHHHH
Q 029893 78 LCESGGDNLAANFSR---------E-LADYIIYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGA-DLAVME 143 (186)
Q Consensus 78 iIEtsG~~l~~~~~~---------~-~ad~~v~VvDa~~~~~---~~~~~~~~~~~adiivlNK~Dl~~~~~~-~~~~~~ 143 (186)
|||++| ++.|... . .-+.+|+|+|+.+... ....+..|++.||++|+||+|++++ + .+++++
T Consensus 89 iIE~sG--~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~--~~~i~~~~ 164 (178)
T PF02492_consen 89 IIETSG--LADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD--EQKIERVR 164 (178)
T ss_dssp EEEEEC--SSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH--H--HHHHH
T ss_pred EECCcc--ccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh--hhHHHHHH
Confidence 999999 4433322 0 1266899999976532 2233456899999999999999988 5 458999
Q ss_pred HHHHhhCCCCCEE
Q 029893 144 RDALRMRDGGPFI 156 (186)
Q Consensus 144 ~~l~~~~p~a~i~ 156 (186)
+.++++||.++|+
T Consensus 165 ~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 165 EMIRELNPKAPIV 177 (178)
T ss_dssp HHHHHH-TTSEEE
T ss_pred HHHHHHCCCCEEe
Confidence 9999999999987
No 6
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.94 E-value=2.5e-26 Score=180.60 Aligned_cols=165 Identities=32% Similarity=0.429 Sum_probs=125.8
Q ss_pred HHHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCcEEEEe
Q 029893 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIE 80 (186)
.++++++..+.++||+.||++.++|..++++.|. +++++++|| ||.. ..++ .+++..+. ..++|+||||
T Consensus 40 ~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~----~~~~l~~gcic~~~--~~~~---~~~l~~~~-~~~~d~IiIE 109 (207)
T TIGR00073 40 EKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA----PAIQINTGKECHLD--AHMV---AHALEDLP-LDDIDLLFIE 109 (207)
T ss_pred HHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC----cEEEEcCCCcccCC--hHHH---HHHHHHhc-cCCCCEEEEe
Confidence 5666766555899999999998899999988765 689999999 7632 2222 14454443 3478999999
Q ss_pred cCCCeeEEeeeee-cCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEe
Q 029893 81 SGGDNLAANFSRE-LADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (186)
Q Consensus 81 tsG~~l~~~~~~~-~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~S 159 (186)
|+| .+..+.++. ..+..++|+|+.+++.....++.++..|+++++||+|+.+.......++.+.+++.+|.+|++++|
T Consensus 110 t~G-~l~~~~~~~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~S 188 (207)
T TIGR00073 110 NVG-NLVCPADFDLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMS 188 (207)
T ss_pred cCC-CcCCCcccccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEE
Confidence 999 333343332 246678899999887666666667788999999999998642234566777788888999999999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 029893 160 VKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 160 a~~g~gi~~l~~~i~~~~ 177 (186)
|++|.|++++++++.++.
T Consensus 189 a~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 189 LKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998764
No 7
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.93 E-value=8e-27 Score=194.19 Aligned_cols=142 Identities=20% Similarity=0.315 Sum_probs=105.9
Q ss_pred HHHHHHHhcCCcEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhh-----cCC
Q 029893 2 LALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNL-----FKA 74 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~-----~~~ 74 (186)
++++++ ..++|+|||+|||| +++|+.++.+.+. ++.+|+||| ||++ ++|+. +++.++.+. .+|
T Consensus 22 ~~ll~~-~~~~riaVi~NEfG~v~iD~~ll~~~~~----~v~eL~~GCiCCs~--~~~l~---~~l~~l~~~~~~~~~~~ 91 (318)
T PRK11537 22 RHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT----QIKTLTNGCICCSR--SNELE---DALLDLLDNLDKGNIQF 91 (318)
T ss_pred HHHHhc-ccCCcccccccCcCCccccHHHHhCcCc----eEEEECCCEEEEcc--CchHH---HHHHHHHHHHhccCCCC
Confidence 344433 23589999999999 9999999976433 689999999 9985 66665 566665432 269
Q ss_pred cEEEEecCCCeeEEe------ee--eec-----CceEEEEEeCCCCCCCccC---CCCCCCceeEEEEecCCCCCccccc
Q 029893 75 DLLLCESGGDNLAAN------FS--REL-----ADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 75 D~iiIEtsG~~l~~~------~~--~~~-----ad~~v~VvDa~~~~~~~~~---~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
|+|+|||||+ +.| +. ... -+.+|+|+|+.++...... ...|++.||+||+||+|++++ .
T Consensus 92 d~IvIEttG~--a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~- 166 (318)
T PRK11537 92 DRLVIECTGM--ADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE--A- 166 (318)
T ss_pred CEEEEECCCc--cCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEeccccCCH--H-
Confidence 9999999994 322 10 111 2568999999886543322 235789999999999999976 3
Q ss_pred HHHHHHHHHhhCCCCCEEEEe
Q 029893 139 LAVMERDALRMRDGGPFIFAQ 159 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~S 159 (186)
+++.+.++++||.|+++.++
T Consensus 167 -~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 167 -EKLRERLARINARAPVYTVV 186 (318)
T ss_pred -HHHHHHHHHhCCCCEEEEec
Confidence 67888999999999999876
No 8
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.93 E-value=1.5e-25 Score=188.19 Aligned_cols=153 Identities=23% Similarity=0.275 Sum_probs=111.5
Q ss_pred CCcEEEEEcccC-CchhHHHHHhcCCC--CcCceEeccCCC-cccCCcccccccCcchhHhhhh-hcCCcEEEEecCCCe
Q 029893 11 KYSLAAVTNDIF-TKEDGEFLMRNGAL--PEERIRAVETGG-CPHAAIREDISINLGPLEELSN-LFKADLLLCESGGDN 85 (186)
Q Consensus 11 ~~~vaVi~nd~g-~~iD~~~i~~~~~~--~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~-~~~~D~iiIEtsG~~ 85 (186)
++|+|||+|||| ++||+.++...+.. ..+++++|+||| ||++ ++|+. .++.+|.. ..+||+|+|||||++
T Consensus 30 ~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~--~~dl~---~~l~~l~~~~~~~d~IvIEtsG~a 104 (341)
T TIGR02475 30 GRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTV--ADDFI---PTMTKLLARRQRPDHILIETSGLA 104 (341)
T ss_pred CCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccC--cHHHH---HHHHHHHhccCCCCEEEEeCCCCC
Confidence 589999999999 99999999865421 123699999999 9985 66664 67777764 458999999999942
Q ss_pred ----eEEeee-eec-----CceEEEEEeCCCCCCCc-------------------------cCCCCCCCceeEEEEecCC
Q 029893 86 ----LAANFS-REL-----ADYIIYIIDVSGGDKIP-------------------------RKGGPGITQADLLVINKTD 130 (186)
Q Consensus 86 ----l~~~~~-~~~-----ad~~v~VvDa~~~~~~~-------------------------~~~~~~~~~adiivlNK~D 130 (186)
++..+. +.. -|.+|+|+|+.+..... ..+..|++.||+||+||+|
T Consensus 105 ~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~~AD~IvlnK~D 184 (341)
T TIGR02475 105 LPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLACADLVILNKAD 184 (341)
T ss_pred CHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHHHhCCEEEEeccc
Confidence 111121 111 26689999997642100 0113578999999999999
Q ss_pred CCCcccccHHHHHHHHHhhCCC-CCEEEEeccCCCCHHHHHH
Q 029893 131 LASAIGADLAVMERDALRMRDG-GPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~-a~i~~~Sa~~g~gi~~l~~ 171 (186)
++++ ++++.+++.++++||. ++++.++ ........|+.
T Consensus 185 l~~~--~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 185 LLDA--AGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred cCCH--HHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 9998 7899999999997774 5888776 33456666655
No 9
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.92 E-value=1.1e-26 Score=187.47 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=116.7
Q ss_pred HHHHHhc---CCcEEEEEcccC--CchhHHHHHhcCC-CCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc-CCc
Q 029893 4 LCKFLRD---KYSLAAVTNDIF--TKEDGEFLMRNGA-LPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF-KAD 75 (186)
Q Consensus 4 ~~~~l~~---~~~vaVi~nd~g--~~iD~~~i~~~~~-~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~-~~D 75 (186)
|++++.. ++|+|||.|||| +.++..++...+. -.-+++++|+||| ||++ |+++. .+|.++.+++ +||
T Consensus 73 LLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV--k~~gv---raie~lvqkkGkfD 147 (391)
T KOG2743|consen 73 LLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV--KDNGV---RAIENLVQKKGKFD 147 (391)
T ss_pred HHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe--cchHH---HHHHHHHhcCCCcc
Confidence 4455442 499999999999 5889998876522 1135799999999 9985 65553 7888887754 899
Q ss_pred EEEEecCCCe----eEEeeeeec-------CceEEEEEeCCCCCC-----CccCC----CCCCCceeEEEEecCCCCCcc
Q 029893 76 LLLCESGGDN----LAANFSREL-------ADYIIYIIDVSGGDK-----IPRKG----GPGITQADLLVINKTDLASAI 135 (186)
Q Consensus 76 ~iiIEtsG~~----l~~~~~~~~-------ad~~v~VvDa~~~~~-----~~~~~----~~~~~~adiivlNK~Dl~~~~ 135 (186)
+|++||||++ ++.+|+.+. -|.+|+|+|+.+... .+..+ ..|+..||-|++||+||+++
T Consensus 148 ~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD~II~NKtDli~~- 226 (391)
T KOG2743|consen 148 HILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALADRIIMNKTDLVSE- 226 (391)
T ss_pred eEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhheeeeccccccCH-
Confidence 9999999942 223344332 277899999987532 22222 24789999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 136 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 136 ~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
+++..++++++++|.-|++++|- .....+++++
T Consensus 227 -e~~~~l~q~I~~INslA~m~~Tk-y~~vdlsnvL 259 (391)
T KOG2743|consen 227 -EEVKKLRQRIRSINSLAQMIETK-YSRVDLSNVL 259 (391)
T ss_pred -HHHHHHHHHHHHhhhHHHhhhhh-hccccHHHhc
Confidence 89999999999999988888764 2233455554
No 10
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.87 E-value=1.6e-21 Score=158.07 Aligned_cols=175 Identities=19% Similarity=0.173 Sum_probs=128.5
Q ss_pred HHHHHHHhcC-CcEEEEEcccCCch-------hHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g~~i-------D~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~ 72 (186)
.+|+++|.++ +|||||..|++++. |..+|++....|..+++++++.+ --.++ ....+++ .+.+..
T Consensus 69 ~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS-----~at~~~i-~~ldAa 142 (323)
T COG1703 69 EALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS-----RATREAI-KLLDAA 142 (323)
T ss_pred HHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh-----HHHHHHH-HHHHhc
Confidence 5677888765 99999999999654 88888877656667899999988 33331 1222444 345678
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhh---
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--- 149 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~--- 149 (186)
+||+|||||+|+......-...+|.+++|.-+..|++.+......++.+|++|+||.|+-+.. .....+...++..
T Consensus 143 G~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~A~-~a~r~l~~al~~~~~~ 221 (323)
T COG1703 143 GYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKGAE-KAARELRSALDLLREV 221 (323)
T ss_pred CCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhhHH-HHHHHHHHHHHhhccc
Confidence 999999999994432222223578888888888889888878888999999999999965541 1112223223222
Q ss_pred ----CCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhcc
Q 029893 150 ----RDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGK 183 (186)
Q Consensus 150 ----~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~~ 183 (186)
.+..|++.|||.+|+|+++|++.+..++...+..
T Consensus 222 ~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 222 WRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred ccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 1356999999999999999999999999987764
No 11
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.87 E-value=1.7e-21 Score=162.62 Aligned_cols=173 Identities=20% Similarity=0.199 Sum_probs=120.0
Q ss_pred HHHHHHHhc-CCcEEEEEcccCCch-------hHHHHHhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhc
Q 029893 2 LALCKFLRD-KYSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLF 72 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g~~i-------D~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~ 72 (186)
.+++..++. +++++||.+|+++.+ |..++.+.+..|...+++ .++||++. ++...+ +++. +....
T Consensus 74 ~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~--~~~~~~l~---~~a~~~~~~~~-~~~~~ 147 (332)
T PRK09435 74 EALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRP--SPSSGTLG---GVARKTRETML-LCEAA 147 (332)
T ss_pred HHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEe--cCCccccc---chHHHHHHHHH-HHhcc
Confidence 356667776 489999999998553 777777654434323444 45578862 222323 4444 34467
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHH----h
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDAL----R 148 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~----~ 148 (186)
++|+|||||+|+..........+|++++|+++..+++.+.....+++.+|++|+||+|+.+. ...+.....++ .
T Consensus 148 g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~--~~a~~~~~el~~~L~l 225 (332)
T PRK09435 148 GYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNK--TAARRAAAEYRSALRL 225 (332)
T ss_pred CCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccch--hHHHHHHHHHHHHHhc
Confidence 99999999999653333333468999999887777776554556788999999999999875 33333333333 2
Q ss_pred hC-----CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 149 MR-----DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 149 ~~-----p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.. +..||+++||++|.|+++|++.+.++++....
T Consensus 226 ~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 226 LRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred ccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 22 12699999999999999999999999886553
No 12
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.84 E-value=1.3e-21 Score=156.40 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=113.6
Q ss_pred HHHHHHHhcC-CcEEEEEcccCCch-------hHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g~~i-------D~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~ 72 (186)
.++++++++. +|||||..|+++++ |..+|+++...|..+++++++.+ .-.++ ..+.+++ .+.+..
T Consensus 47 ~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls-----~~t~~~v-~ll~aa 120 (266)
T PF03308_consen 47 DALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS-----RATRDAV-RLLDAA 120 (266)
T ss_dssp HHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH-----HHHHHHH-HHHHHT
T ss_pred HHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc-----HhHHHHH-HHHHHc
Confidence 5677778764 99999999999655 77777765333556899999887 33321 1222444 455678
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhC--
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR-- 150 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~-- 150 (186)
+||+|||||+|+.....--...+|.+++|+-+..|++.+......++.||++|+||.|+.... ....++...+.-..
T Consensus 121 G~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~~gA~-~~~~~l~~~l~l~~~~ 199 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADRPGAD-RTVRDLRSMLHLLRER 199 (266)
T ss_dssp T-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SHHHHH-HHHHHHHHHHHHCSTS
T ss_pred CCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCChHHHH-HHHHHHHHHHhhcccc
Confidence 999999999994322111124579999999999999998888888999999999999965441 12233343333221
Q ss_pred ---CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 151 ---DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 151 ---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+..||+.+||.+|+|+++|++.|.++....+.
T Consensus 200 ~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 200 EDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp CTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 24699999999999999999999998876654
No 13
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.80 E-value=2.1e-20 Score=141.29 Aligned_cols=113 Identities=26% Similarity=0.324 Sum_probs=81.6
Q ss_pred CCcEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchh-Hhhhh-hcCCcEEEEecCCCee
Q 029893 11 KYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPL-EELSN-LFKADLLLCESGGDNL 86 (186)
Q Consensus 11 ~~~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l-~~l~~-~~~~D~iiIEtsG~~l 86 (186)
+.++++|+||+| .++|+..+.+.+. .+++|++|| ||++ ++|+...+..+ .++.. ..+||+|||||+|+
T Consensus 26 ~~~~~~i~~~~G~~~~d~~~~~~~~~----~v~~l~~GCiCC~~--~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~-- 97 (158)
T cd03112 26 GRKIAVIENEFGEVGIDNQLVVDTDE----EIIEMNNGCICCTV--RGDLIRALLDLLERLDAGKIAFDRIVIETTGL-- 97 (158)
T ss_pred CCcEEEEecCCCccchhHHHHhCCCc----eEEEeCCCEeEeeC--chhHHHHHHHHHHHHHhccCCCCEEEEECCCc--
Confidence 589999999999 8999999986543 689999999 9986 66665433221 23222 35899999999994
Q ss_pred EEee-------------eeecCceEEEEEeCCCCCCCc---cCCCCCCCceeEEEEecCCC
Q 029893 87 AANF-------------SRELADYIIYIIDVSGGDKIP---RKGGPGITQADLLVINKTDL 131 (186)
Q Consensus 87 ~~~~-------------~~~~ad~~v~VvDa~~~~~~~---~~~~~~~~~adiivlNK~Dl 131 (186)
+.|. .....+.+++++|+.++.... ..+..|++.||+||+||+|+
T Consensus 98 ~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 98 ADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNKTDL 158 (158)
T ss_pred CCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEecccC
Confidence 2111 011247789999998764422 22456889999999999996
No 14
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.58 E-value=1.4e-14 Score=120.03 Aligned_cols=172 Identities=21% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHHhc-CCcEEEEEcccCCch-------hHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcC
Q 029893 2 LALCKFLRD-KYSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK 73 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g~~i-------D~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~ 73 (186)
.+++..+.. +++++||.+|+..++ |..++......|...+++++++| ++. .+......+..+.+..+
T Consensus 52 ~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~l~~~g 126 (300)
T TIGR00750 52 EALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRG--HLG---GLSQATRELILLLDAAG 126 (300)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccc--ccc---chhHHHHHHHHHHHhCC
Confidence 345555655 489999999988543 33344332222222566665532 110 00111122223345679
Q ss_pred CcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHH----HHHHh-
Q 029893 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME----RDALR- 148 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~----~~l~~- 148 (186)
+|+|||||+|.+.........+|.++++.+...+++.........+.++++|+||+|+.+. ....... ..+..
T Consensus 127 ~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~l 204 (300)
T TIGR00750 127 YDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGA--TNVTIARLMLALALEEI 204 (300)
T ss_pred CCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccch--hHHHHHHHHHHHHHhhc
Confidence 9999999999432111112346777777666555543222233467789999999999865 2221111 11111
Q ss_pred --h--CCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 149 --M--RDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 149 --~--~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
. .+..+++++||++|+|+++|++++.++....
T Consensus 205 ~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 205 RRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred cccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 1 1234799999999999999999998876533
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=117.94 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=90.2
Q ss_pred chhHhhhhhcCCcEEEEecCCCe----eE---Eeee-------eecCceEEEEEeCCCCCCCccC----CCCCCCceeEE
Q 029893 63 GPLEELSNLFKADLLLCESGGDN----LA---ANFS-------RELADYIIYIIDVSGGDKIPRK----GGPGITQADLL 124 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~----l~---~~~~-------~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adii 124 (186)
+++....+..+-.|.+|+|+|++ +. .-|+ ++.++++++|+|++++...++. +......|.+|
T Consensus 215 D~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 215 DSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred cceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence 56665555668889999999963 11 1121 2357999999999998654432 33345679999
Q ss_pred EEecCCCCCcccccHHHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 125 VINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 125 vlNK~Dl~~~~~~~~~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
|+||||+++......+.++..+++.. .++|++++||++|.|++++++.+.+.+..++.
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 99999998763345566767776654 57999999999999999999999999888765
No 16
>COG1159 Era GTPase [General function prediction only]
Probab=99.21 E-value=3.4e-11 Score=98.15 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=84.0
Q ss_pred hhhhcCCcEEEEecCCCeeE-----------EeeeeecCceEEEEEeCCCCCCCccCC-CCC---CCceeEEEEecCCCC
Q 029893 68 LSNLFKADLLLCESGGDNLA-----------ANFSRELADYIIYIIDVSGGDKIPRKG-GPG---ITQADLLVINKTDLA 132 (186)
Q Consensus 68 l~~~~~~D~iiIEtsG~~l~-----------~~~~~~~ad~~v~VvDa~~~~~~~~~~-~~~---~~~adiivlNK~Dl~ 132 (186)
.........|||+|+|+.-- +..+...+|++++|+|+.++....+.+ ..+ ...+.++++||+|..
T Consensus 48 I~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 48 IVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred EEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 33345889999999996311 011234679999999998854332211 112 345899999999999
Q ss_pred Cccccc-HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 133 SAIGAD-LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
++ .. +..+.+.++...|+..++++||++|.|++.|++.+.+++|+.
T Consensus 128 ~~--~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 128 KP--KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred Cc--HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 87 45 567778888888999999999999999999999999999875
No 17
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.12 E-value=3.6e-10 Score=83.71 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=72.7
Q ss_pred EEEecCCCeeEEeee-------eecCceEEEEEeCCCCCC-CccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHh
Q 029893 77 LLCESGGDNLAANFS-------RELADYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALR 148 (186)
Q Consensus 77 iiIEtsG~~l~~~~~-------~~~ad~~v~VvDa~~~~~-~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~ 148 (186)
-+|+|+|--+..|.. ...||++++|.|+++... .+-.+...+..+.+-|+||+|+.+.. +++++.+++++.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~-~~i~~a~~~L~~ 117 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDD-ANIERAKKWLKN 117 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccch-hhHHHHHHHHHH
Confidence 459999943433321 125799999999998654 34455566788999999999999321 678888888877
Q ss_pred hCCCCCEEEEeccCCCCHHHHHHHHH
Q 029893 149 MRDGGPFIFAQVKHGLGVEEIVNHIL 174 (186)
Q Consensus 149 ~~p~a~i~~~Sa~~g~gi~~l~~~i~ 174 (186)
... .+||++|+.+|+|+++|.++|.
T Consensus 118 aG~-~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 118 AGV-KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCC-CCeEEEECCCCcCHHHHHHHHh
Confidence 643 4789999999999999999986
No 18
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.07 E-value=3e-10 Score=92.72 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCeeE-Ee----------eeeecCceEEEEEeCCCCCCCccC---CCCCCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLA-AN----------FSRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~-~~----------~~~~~ad~~v~VvDa~~~~~~~~~---~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
+..++|++|+|..-. .. ..+..+|++++|+|++........ .......+.++|+||+|+.+. ..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~ 124 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK--DK 124 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH--HH
Confidence 456899999994211 00 012457999999999876433211 111235688999999999865 34
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.......+....+..+++++||++|.|+++|++++.+.+|+.
T Consensus 125 ~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 125 LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 433334444445566999999999999999999999988754
No 19
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.04 E-value=7.9e-10 Score=95.53 Aligned_cols=108 Identities=21% Similarity=0.305 Sum_probs=76.0
Q ss_pred cCCcEEEEecCCCeeEE-------ee-------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCC-
Q 029893 72 FKADLLLCESGGDNLAA-------NF-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA- 132 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-------~~-------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~- 132 (186)
.+..+.+++|+|..-.. .+ .+..+|++++|+|+.++...... .......+.++|+||||+.
T Consensus 218 ~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 218 NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 35579999999942100 01 12457999999999987543221 1112346899999999998
Q ss_pred CcccccHHHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 133 SAIGADLAVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
+. ...+.+.+.++... ++++++++||++|.|++++++++.+.+..+.
T Consensus 298 ~~--~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 298 DE--KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CH--HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 33 44556666665543 4689999999999999999999998777554
No 20
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=8.6e-10 Score=95.54 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=76.5
Q ss_pred cCCcEEEEecCCCeeEE-------ee-------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNLAA-------NF-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-------~~-------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~ 133 (186)
.+.++.+++|+|+.-.. .+ ....+|++++|+|++++...... +......+.++++||||+.+
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 46679999999952100 00 12357999999999987543221 11223568999999999986
Q ss_pred cccccHHHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 134 AIGADLAVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
+ ...+.+.+.++... +++|++++||++|.|++++++.+.+.+..+.
T Consensus 299 ~--~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 299 E--KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred H--HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 5 44555555555433 5689999999999999999999988777654
No 21
>PRK15494 era GTPase Era; Provisional
Probab=99.03 E-value=6e-10 Score=93.91 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=74.7
Q ss_pred cCCcEEEEecCCCeeE-E---e-------eeeecCceEEEEEeCCCCCCCcc-C---CCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLA-A---N-------FSRELADYIIYIIDVSGGDKIPR-K---GGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-~---~-------~~~~~ad~~v~VvDa~~~~~~~~-~---~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+..++|++|+|..-. . . ..+..+|++++|+|+........ . .......+.++|+||+|+.+.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-- 175 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-- 175 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--
Confidence 3567899999994100 0 0 01346899999999876432211 1 112234577899999999754
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
....+.+.++..++..+++++||++|.|++++++++.+.+++.
T Consensus 176 -~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 176 -YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred -cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 3556666676667778999999999999999999999887754
No 22
>PRK00089 era GTPase Era; Reviewed
Probab=99.02 E-value=5e-10 Score=92.19 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=75.7
Q ss_pred cCCcEEEEecCCCeeEEe-----------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAAN-----------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-----------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+.+++|++|+|..-... .....+|++++|+|+.+...... ........+.++|+||+|+.+..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~- 129 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK- 129 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH-
Confidence 457899999999421100 01235799999999987322111 11112356899999999998431
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.++....+.+.+..+..+++++||++|.|++++++++.+.+++
T Consensus 130 ~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 130 EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 4555566666666677899999999999999999999988764
No 23
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=1.4e-09 Score=88.09 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=75.3
Q ss_pred hhHhhhhhcCCcEEEEecCCCeeEEeee-----------ee--cCceEEEEEeCCCCCCCcc----CCC-----CCCCce
Q 029893 64 PLEELSNLFKADLLLCESGGDNLAANFS-----------RE--LADYIIYIIDVSGGDKIPR----KGG-----PGITQA 121 (186)
Q Consensus 64 ~l~~l~~~~~~D~iiIEtsG~~l~~~~~-----------~~--~ad~~v~VvDa~~~~~~~~----~~~-----~~~~~a 121 (186)
.+....+..+.|+++++++|. ..++. .. ..+++++|+|+..+..... .+. .....+
T Consensus 87 ~l~~~l~~~~~~~~~~d~~g~--~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~ 164 (253)
T PRK13768 87 EIKEEIESLDADYVLVDTPGQ--MELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP 164 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcH--HHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 333333445779999999992 22110 11 1678999999976543211 000 134668
Q ss_pred eEEEEecCCCCCcccccHHHHHHH----------------------------HHhhCCCCCEEEEeccCCCCHHHHHHHH
Q 029893 122 DLLVINKTDLASAIGADLAVMERD----------------------------ALRMRDGGPFIFAQVKHGLGVEEIVNHI 173 (186)
Q Consensus 122 diivlNK~Dl~~~~~~~~~~~~~~----------------------------l~~~~p~a~i~~~Sa~~g~gi~~l~~~i 173 (186)
.++|+||+|+.+. .+.+...+. +++.++..+++++|+++++|+++|+++|
T Consensus 165 ~i~v~nK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I 242 (253)
T PRK13768 165 QIPVLNKADLLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAI 242 (253)
T ss_pred EEEEEEhHhhcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHH
Confidence 9999999999876 344333332 3344666799999999999999999999
Q ss_pred HHHHHH
Q 029893 174 LQAWEA 179 (186)
Q Consensus 174 ~~~~~~ 179 (186)
.+.++.
T Consensus 243 ~~~l~~ 248 (253)
T PRK13768 243 QEVFCG 248 (253)
T ss_pred HHHcCC
Confidence 998764
No 24
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.00 E-value=1.1e-09 Score=81.04 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=73.9
Q ss_pred cCCcEEEEecCCCeeEEe-----------eeeecCceEEEEEeCCCCCCCccC-C---CCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAAN-----------FSRELADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-----------~~~~~ad~~v~VvDa~~~~~~~~~-~---~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+.++++++|+|..-... .....+|.+++|+|+.+....... . ....+.+.++|+||+|+....
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~- 127 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK- 127 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH-
Confidence 467899999999421100 012346899999999886322111 1 112346899999999998431
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.........++..++..+++++|++++.|++++++++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 4566667777777777899999999999999999998765
No 25
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.00 E-value=2.2e-09 Score=80.85 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=69.2
Q ss_pred EEecCCCeeEEe-e------eeecCceEEEEEeCCCCCCCccCC-CC-CCCceeEEEEecCCCCCcccccHHHHHHHHHh
Q 029893 78 LCESGGDNLAAN-F------SRELADYIIYIIDVSGGDKIPRKG-GP-GITQADLLVINKTDLASAIGADLAVMERDALR 148 (186)
Q Consensus 78 iIEtsG~~l~~~-~------~~~~ad~~v~VvDa~~~~~~~~~~-~~-~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~ 148 (186)
+++|+|.....+ + .+..+|++++|+|++.++...... .. ....+.++++||+|+.+. ..+.+.+.+++
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~ 117 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA---DVAATRKLLLE 117 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc---cHHHHHHHHHH
Confidence 589999311111 1 123579999999998775432111 01 124578999999998653 44556666666
Q ss_pred hCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 149 MRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 149 ~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.....|++++||++|+|++++++++.+..+..-
T Consensus 118 ~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 118 TGFEEPIFELNSHDPQSVQQLVDYLASLTKQEE 150 (158)
T ss_pred cCCCCCEEEEECCCccCHHHHHHHHHHhchhhh
Confidence 654569999999999999999999998886443
No 26
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.99 E-value=2.7e-10 Score=87.97 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=70.3
Q ss_pred hcCCcEEEEecCCCe--eEEe-eeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 71 LFKADLLLCESGGDN--LAAN-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~--l~~~-~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
.....+.||+|+|-. .... .....+|.+++|+|+.++...+.. .......+-++++||+|+... +..+..
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~---~~~~~~ 143 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK---ELEEII 143 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH---HHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh---hHHHHH
Confidence 456789999999921 0000 112357999999999987543221 122345679999999999943 444433
Q ss_pred HHHH-----hh--CC--CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 144 RDAL-----RM--RD--GGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 144 ~~l~-----~~--~p--~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+.++ .. .+ ..|++++||++|.|+++|++.+.+++|.
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 3333 22 11 3689999999999999999999998873
No 27
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.98 E-value=9.3e-10 Score=83.69 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCcEEEEecCCCee-EEe--eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHH----
Q 029893 73 KADLLLCESGGDNL-AAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAV---- 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~~~--~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~---- 141 (186)
+.+++|+||+|..- ... .....+|.+++|+|+.++..... .+......+.++|+||+|+..+ .....
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~--~~~~~~~~~ 138 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE--EDLEEVLRE 138 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch--hcHHHHHHH
Confidence 67899999999310 000 11235799999999987643211 1112245689999999999874 33333
Q ss_pred HHHHHHhhC------------CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMR------------DGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~------------p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+.+.++... ...+++++||++|.|++++++++.+.+|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 333333321 2579999999999999999999988765
No 28
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.93 E-value=3.3e-09 Score=79.34 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=69.1
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
.+.++.|++|+|..- . ....+..+|.+++|+|++++..... ........+.++|+||+|+.+. ..+.+..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---~~~~~~~ 124 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA---NPERVKN 124 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc---cHHHHHH
Confidence 467899999999310 0 0112345799999999987643211 1112345689999999999754 1222222
Q ss_pred HHHh--------hCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 DALR--------MRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~l~~--------~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.++. .....+++++||++|.|++++++++.++...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAEK 167 (168)
T ss_pred HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhhc
Confidence 2221 1224689999999999999999999887643
No 29
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.92 E-value=4.6e-09 Score=78.39 Aligned_cols=105 Identities=20% Similarity=0.247 Sum_probs=70.6
Q ss_pred cCCcEEEEecCCCeeE----E---ee-------eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNLA----A---NF-------SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~---~~-------~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
.+.++.+++|+|..-. . .+ ....+|++++|+|+.++..... .+......+.++++||+|+.+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 4677999999994210 0 00 1124689999999987643211 111123568899999999986
Q ss_pred cccccHHHHHHHHHhhCC---CCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 134 AIGADLAVMERDALRMRD---GGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~p---~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
......+...+.+++..+ ..+++++||++|.|++++++++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 128 KDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 521234445555655443 5799999999999999999998764
No 30
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.92 E-value=5.5e-09 Score=76.47 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=63.2
Q ss_pred EEEecCCCeeEEe--e-----eeecCceEEEEEeCCCCCCCcc-CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHh
Q 029893 77 LLCESGGDNLAAN--F-----SRELADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALR 148 (186)
Q Consensus 77 iiIEtsG~~l~~~--~-----~~~~ad~~v~VvDa~~~~~~~~-~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~ 148 (186)
.+++|+|...... + .+..+|++++|+|++++..... .+......+.++|+||+|+.+.. ...+...+..++
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~ 116 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEAD-VDIERAKELLET 116 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcc-cCHHHHHHHHHH
Confidence 5788888311000 1 1346899999999988765322 22222345889999999997531 233444444444
Q ss_pred hCCCCCEEEEeccCCCCHHHHHHHHH
Q 029893 149 MRDGGPFIFAQVKHGLGVEEIVNHIL 174 (186)
Q Consensus 149 ~~p~a~i~~~Sa~~g~gi~~l~~~i~ 174 (186)
. ...+++++||++|.|++++++++.
T Consensus 117 ~-~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 117 A-GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred c-CCCcEEEEecCCCCCHHHHHHHHh
Confidence 3 234899999999999999999874
No 31
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.91 E-value=1.5e-09 Score=84.93 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=66.6
Q ss_pred CcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCCC-CCc-cCC---CCCCC-ceeEEEEecCCCCCcccccHHHHHH
Q 029893 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGD-KIP-RKG---GPGIT-QADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~~-~~~-~~~---~~~~~-~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
.-+.|++|.|-. +...+ ....+|.+++|+|+.++. ... ... ....+ .+.++|+||+|+.++ .......+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~ 160 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYE 160 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHH
Confidence 568999999921 10111 112469999999998742 111 100 11122 246889999999875 33333333
Q ss_pred HHHhhC-----CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 DALRMR-----DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~l~~~~-----p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+++.. ...+++++||++|+|+++|++++.+.+|+
T Consensus 161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 333322 35689999999999999999999987765
No 32
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.90 E-value=3.1e-09 Score=97.51 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=76.4
Q ss_pred cCCcEEEEecCCCee----E--Ee-e-------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNL----A--AN-F-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l----~--~~-~-------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~ 133 (186)
.+.++.|++|+|+.- . .. + .++.+|++++|+|++++...... .......+.++|+||||+.+
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 466788999999420 0 01 1 12457999999999887543211 11123568999999999987
Q ss_pred cccccHHHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 134 AIGADLAVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+ ...+.+.+.++.. .++++++++||++|.|++++++.+.+.++.+..
T Consensus 576 ~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 576 E--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred h--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 5 3444444444432 357899999999999999999999999887654
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.89 E-value=2.6e-09 Score=93.71 Aligned_cols=109 Identities=21% Similarity=0.155 Sum_probs=73.6
Q ss_pred cCCcEEEEecCCCee----E--Ee-e-------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNL----A--AN-F-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l----~--~~-~-------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~ 133 (186)
.+..+.|++|+|+.- . .. + .+..+|++++|+|++++...... .......+.++|+||+|+.+
T Consensus 257 ~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 257 GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 355678999999420 0 00 1 12457999999999886543211 11113468899999999986
Q ss_pred cccccHHHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 134 AIGADLAVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+ .........+.+. .+++|++++||++|.|++++++.+.+.++.++.
T Consensus 337 ~--~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 337 E--DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred h--hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 4 2333333333321 246899999999999999999999998887664
No 34
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.89 E-value=3.3e-09 Score=79.29 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=73.1
Q ss_pred HHHHHHhc-CCcEEEEEcccCC-chhHHHHH------hcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCC
Q 029893 3 ALCKFLRD-KYSLAAVTNDIFT-KEDGEFLM------RNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA 74 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g~-~iD~~~i~------~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~ 74 (186)
++...+.+ +.|+.++-.|++. .-.+..+. +....+.-.+..+..|+-++. .........+..+..++
T Consensus 18 ~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 92 (148)
T cd03114 18 ALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGG-----LSRATPEVIRVLDAAGF 92 (148)
T ss_pred HHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccc-----cchhHHHHHHHHHhcCC
Confidence 44555554 4999999999873 22122221 110001113445544442221 11112222234445689
Q ss_pred cEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCC
Q 029893 75 DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 130 (186)
Q Consensus 75 D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~D 130 (186)
|+|||||+|++-........+|.+++|..+...+.....+..+++.||++++||+|
T Consensus 93 D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 93 DVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 99999999943211112345799999998887777777777889999999999998
No 35
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.89 E-value=4.8e-09 Score=79.55 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=66.8
Q ss_pred cCCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCcc--CC--CCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 72 FKADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR--KG--GPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~--~~--~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
.++.+.|++|+|..- .. ...+..+|.+++|+|++.+..... .+ ......+.++|+||+|+.+. . .....+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~--~-~~~~~~ 141 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA--D-PERVKQ 141 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC--C-HHHHHH
Confidence 467788999999310 00 012345899999999987643211 01 11124578999999998754 1 222223
Q ss_pred HHHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 145 DALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 145 ~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.+.. +..+++++||++|+|++++++++.+.+|
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 333322 3346999999999999999999987654
No 36
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.88 E-value=4.8e-09 Score=81.09 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=69.0
Q ss_pred cCCcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccccc----HH
Q 029893 72 FKADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGAD----LA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~----~~ 140 (186)
.+..+.|++|+|.. +...+ ....+|.+++|+|+.++..... ........+.++++||+|+.+. .. .+
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~~~~~~ 143 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE--EERERKIE 143 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH--HHHHHHHH
Confidence 36789999999931 11111 1124689999999987643221 1111134578999999999864 22 23
Q ss_pred HHHHHHHhh-----CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRM-----RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~-----~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
++.+.++.. +...+++++||++|+|+++|++++....+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 144 KMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 333333322 34579999999999999999999987544
No 37
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.87 E-value=1.1e-08 Score=74.43 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCcEEEEecCCCeeEEee----------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLAANF----------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~----------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
..++.+++|.|..-.... ....+|.+++++|+......... .......+.++|+||+|+... ..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~ 121 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE--EE 121 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh--hh
Confidence 679999999994211100 12346899999999887543222 223356789999999999876 34
Q ss_pred HHHHH---HHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 139 LAVME---RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 139 ~~~~~---~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
..... .......+..+++++||+++.|++++++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 43332 223344567899999999999999999998764
No 38
>PTZ00099 rab6; Provisional
Probab=98.87 E-value=1.2e-08 Score=78.34 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=71.4
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|.+|+|..-- .+..++.+|++++|+|.++...... .+. ..-..+.++|.||+||.+......+
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~ 106 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYE 106 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHH
Confidence 4678999999993110 1123457899999999988532110 110 0113467899999999753212333
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+.....+.. ..+++++||++|.|++++|+++.+.+++-++
T Consensus 107 e~~~~~~~~--~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 107 EGMQKAQEY--NTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 333333333 3478999999999999999999998876443
No 39
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.84 E-value=6.7e-09 Score=79.73 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=68.8
Q ss_pred cCCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+.+|+|.. .. ....+..+|.+++|+|+++..... ..+......+.++|+||+|+.+. ...
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~ 127 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSV 127 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCH
Confidence 45778899999931 10 011234689999999998753211 01122235689999999999754 233
Q ss_pred HHHHHHHH--hhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 140 AVMERDAL--RMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 140 ~~~~~~l~--~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+.....+. ... ...+++++||++|+|++++++++.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 128 SEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred HHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 33333322 121 124689999999999999999988766433
No 40
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.84 E-value=7.1e-09 Score=82.57 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=68.8
Q ss_pred hcCCcEEEEecCCCe-eE-Eee-ee--ecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHH
Q 029893 71 LFKADLLLCESGGDN-LA-ANF-SR--ELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~-~~~-~~--~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
..+.-+.||+|+|.. .. ... .. ..+|++++|+|+.++..... .+......+.++|+||+|+.++ .....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~--~~~~~ 158 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPA--NILQE 158 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCH--HHHHH
Confidence 446788999999931 00 011 11 24699999999988654321 1222345678999999999876 44444
Q ss_pred HHHHHHhh----------------------------CCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 142 MERDALRM----------------------------RDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 142 ~~~~l~~~----------------------------~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
..+.+++. ....|++.+||.+|+|+++|+++|...
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 44433321 123599999999999999999988654
No 41
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.8e-09 Score=90.58 Aligned_cols=103 Identities=28% Similarity=0.372 Sum_probs=76.6
Q ss_pred CcEEEEecCCCeeEEeeeee------cCceEEEEEeCCCCCCCccCC----CCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 74 ADLLLCESGGDNLAANFSRE------LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~~~------~ad~~v~VvDa~~~~~~~~~~----~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
+-+=+|+|.| .+ .|+.+ .++.+++||||.+|.+.+..+ .-+...+.|.|+||+|+.++ +.+++.
T Consensus 125 ylLNLIDTPG-Hv--DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a---dpe~V~ 198 (650)
T KOG0462|consen 125 YLLNLIDTPG-HV--DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA---DPERVE 198 (650)
T ss_pred eEEEeecCCC-cc--cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC---CHHHHH
Confidence 5566889999 22 22221 248899999999997654321 12234578999999999876 566777
Q ss_pred HHHHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 144 RDALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 144 ~~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
..+...+ |.++++.+|||+|.|++++++.|.+..|.-+.
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 7777654 77899999999999999999999988775544
No 42
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.83 E-value=1.7e-08 Score=75.71 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=65.5
Q ss_pred cCCcEEEEecCCCeeEEeee-------------eecCceEEEEEeCCCCCCCc-c---C----CCCCC-CceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLAANFS-------------RELADYIIYIIDVSGGDKIP-R---K----GGPGI-TQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~-------------~~~ad~~v~VvDa~~~~~~~-~---~----~~~~~-~~adiivlNK~ 129 (186)
.+..+.|++|+|.. ..+.. ...+|.+++|+|+++..... . . ..... ..+.++|+||+
T Consensus 45 ~~~~~~i~Dt~G~~-~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLL-DRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKI 123 (168)
T ss_pred CceEEEEEECCCcC-CccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcc
Confidence 35789999999941 00100 01257889999998643210 0 0 11111 56899999999
Q ss_pred CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
|+.+. .......+ .... +..+++++||++|.|++++++++.+.+
T Consensus 124 Dl~~~--~~~~~~~~-~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTF--EDLSEIEE-EEEL-EGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCch--hhHHHHHH-hhhh-ccCceEEEEecccCCHHHHHHHHHHHh
Confidence 99865 33333222 2222 356899999999999999999988754
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.83 E-value=6.9e-09 Score=77.71 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=67.4
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+++|+|.. ... ...+..+|.+++|+|+.+...... ........+.++++||+|+.+. ...
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~ 125 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSV 125 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCH
Confidence 36889999999931 100 112345799999999977532110 0111134689999999999765 444
Q ss_pred HHHHHHHHhh----C-CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDALRM----R-DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~~~----~-p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++....++.. . ...+++++||++|.|+++++++|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 126 EEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 4444444332 1 2358999999999999999999864
No 44
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.82 E-value=1.2e-08 Score=75.85 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc----CCCCCCCc-eeEEEEecCCCCCcccccH----H
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGITQ-ADLLVINKTDLASAIGADL----A 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~-adiivlNK~Dl~~~~~~~~----~ 140 (186)
+..+.+++|+|.. .... ..+..+|++++|+|+.++..... ........ +.++++||+|+.++ ... +
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~--~~~~~~~~ 127 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE--DWLELVEE 127 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH--HHHHHHHH
Confidence 4578899999931 0000 12345899999999976421110 01111233 78999999999865 222 2
Q ss_pred HHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++.+.++.. ....+++++||++|.|++++++++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 128 EIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 333334332 13469999999999999999998864
No 45
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.81 E-value=4e-08 Score=82.76 Aligned_cols=106 Identities=20% Similarity=0.346 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCeeEE--------ee--eeecCceEEEEEeCCCCCCCc---------cCCCC-CCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDNLAA--------NF--SRELADYIIYIIDVSGGDKIP---------RKGGP-GITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~--------~~--~~~~ad~~v~VvDa~~~~~~~---------~~~~~-~~~~adiivlNK~Dl~ 132 (186)
...++|++++|+.-.+ .| .++.++++++|+|+++.+... ..+.. ....+.++|+||+|+.
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 4568999999941100 11 123478999999998654210 11211 2357899999999998
Q ss_pred CcccccHH--HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 133 SAIGADLA--VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 133 ~~~~~~~~--~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
++ .... ......+.. ..+++++||++++|++++++++.+.++..+.
T Consensus 285 ~~--~~~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 285 DE--EEEREKRAALELAAL--GGPVFLISAVTGEGLDELLRALWELLEEARR 332 (335)
T ss_pred Cc--hhHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHHHHHhhhc
Confidence 65 2222 122222222 3689999999999999999999998887654
No 46
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.79 E-value=1.9e-08 Score=74.06 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=66.4
Q ss_pred cCCcEEEEecCCCeeEEe-----------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAAN-----------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-----------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+..+.|++|+|..-..+ .....+|++++|+|+.++..... .+......+.++|+||+|+.+.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-- 120 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE-- 120 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh--
Confidence 357899999999421111 01234799999999977543221 1122235689999999999876
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
... ...+... ...+++++|+++|.|++++++++.+.
T Consensus 121 ~~~---~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 121 EDE---AAEFYSL-GFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HHH---HHHHHhc-CCCCeEEEecccCCCHHHHHHHHHhh
Confidence 222 2223333 23478999999999999999998764
No 47
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.78 E-value=5e-08 Score=73.12 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=65.0
Q ss_pred CcEEEEecCCCee-EE---ee------eeecCceEEEEEeCCCC-CCCc---------cCCCC-CCCceeEEEEecCCCC
Q 029893 74 ADLLLCESGGDNL-AA---NF------SRELADYIIYIIDVSGG-DKIP---------RKGGP-GITQADLLVINKTDLA 132 (186)
Q Consensus 74 ~D~iiIEtsG~~l-~~---~~------~~~~ad~~v~VvDa~~~-~~~~---------~~~~~-~~~~adiivlNK~Dl~ 132 (186)
..+.|++|+|..- .. .+ ....+|.+++|+|+++. .... ..+.. ....+.++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 3789999999410 00 00 11237899999999886 2210 01111 1246789999999998
Q ss_pred CcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 133 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+. .................+++++||++|.|++++++++.+.
T Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DE--EELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cc--hhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 76 3333323222222124589999999999999999998765
No 48
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.78 E-value=1.1e-08 Score=87.99 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=75.8
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeEEe-----------eeeecCceEEEEEeCCCCCCCc-cC-CC-CCCCceeEEEEec
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLAAN-----------FSRELADYIIYIIDVSGGDKIP-RK-GG-PGITQADLLVINK 128 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~~~-----------~~~~~ad~~v~VvDa~~~~~~~-~~-~~-~~~~~adiivlNK 128 (186)
|.+++-..-.++-+.+++|+|++-... .....||++++|+|++++.... .. +. ..-..+.++|+||
T Consensus 254 Dviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK 333 (454)
T COG0486 254 DVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNK 333 (454)
T ss_pred ceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEec
Confidence 334443345799999999999542111 1223589999999999863221 11 11 1123578999999
Q ss_pred CCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 129 TDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+||.++ ...... +..+..+++.+||++|+|++.|.++|.+.+...
T Consensus 334 ~DL~~~--~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 334 ADLVSK--IELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hhcccc--cccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 999987 333222 233445899999999999999999999887754
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.77 E-value=2.5e-08 Score=73.75 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCeeEEe---------eee--ecCceEEEEEeCCCCCCCccC--CCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLAAN---------FSR--ELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~---------~~~--~~ad~~v~VvDa~~~~~~~~~--~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
+.++.|++|+|..--.. ..+ ..+|.+++|+|+.+....... .......+.++|+||+|+.+. ...
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~ 119 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEK--RGI 119 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhccc--ccc
Confidence 46899999999421010 011 257999999999875432111 111245689999999999865 222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
....+.+.... ..+++++||++|.|++++++++.+..
T Consensus 120 ~~~~~~~~~~~-~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 120 KIDLDKLSELL-GVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred hhhHHHHHHhh-CCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 22222332222 36899999999999999999988763
No 50
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=3.7e-08 Score=73.64 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=57.2
Q ss_pred cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 94 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
.+|++++|+|+.++..... .+......+.++|+||+|+.++ ....... .+.+. ...+++++||++|.|+++|
T Consensus 12 ~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~-~~~~~-~~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 12 ESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVLEKWK-SIKES-EGIPVVYVSAKERLGTKIL 87 (156)
T ss_pred hCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHHHHHH-HHHHh-CCCcEEEEEccccccHHHH
Confidence 4799999999977543221 1112235688999999999754 3333222 22222 3468999999999999999
Q ss_pred HHHHHHHHHH
Q 029893 170 VNHILQAWEA 179 (186)
Q Consensus 170 ~~~i~~~~~~ 179 (186)
++.+.+.++.
T Consensus 88 ~~~l~~~~~~ 97 (156)
T cd01859 88 RRTIKELAKI 97 (156)
T ss_pred HHHHHHHHhh
Confidence 9999988875
No 51
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.9e-08 Score=76.23 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCe---eEEeeeeecCceEEEEEeCCCCCCCcc------CCCCCCC--ceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDN---LAANFSRELADYIIYIIDVSGGDKIPR------KGGPGIT--QADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~---l~~~~~~~~ad~~v~VvDa~~~~~~~~------~~~~~~~--~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.|=+|.|-- --+|++++.|+..|+|+|.++.+.... ....+.. .-..+|.||+||.+.+..+.++
T Consensus 53 ~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~e 132 (200)
T KOG0092|consen 53 TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEE 132 (200)
T ss_pred EEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHH
Confidence 4677888999931 115667889999999999988654211 1111222 1235689999999854355566
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhcc
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGK 183 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~~ 183 (186)
......+ .....++||||||.|++++|..|.+.+|...-.
T Consensus 133 a~~yAe~--~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 133 AQAYAES--QGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHh--cCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 6555554 357999999999999999999999988866543
No 52
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.77 E-value=5.5e-08 Score=83.45 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=69.5
Q ss_pred cEEEEecCCCeeEEe--------e--eeecCceEEEEEeCCCCCC--Cc----------cCCC-CCCCceeEEEEecCCC
Q 029893 75 DLLLCESGGDNLAAN--------F--SRELADYIIYIIDVSGGDK--IP----------RKGG-PGITQADLLVINKTDL 131 (186)
Q Consensus 75 D~iiIEtsG~~l~~~--------~--~~~~ad~~v~VvDa~~~~~--~~----------~~~~-~~~~~adiivlNK~Dl 131 (186)
.++|++|+|+.-.+. + .+..+|++++|+|++..+. .. ..+. .....+.++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 489999999421110 1 1235799999999874311 10 0111 1135689999999999
Q ss_pred CCcccccHHHHHHHHHhhCCC-CCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 132 ASAIGADLAVMERDALRMRDG-GPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~p~-a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.+. .++....+.+.+..+. .+++++||+++.|+++|++++.+.+++.
T Consensus 288 ~~~--~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 288 LDE--EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCh--HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 865 4444444444443333 4899999999999999999999988764
No 53
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.76 E-value=3.4e-08 Score=74.65 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=68.9
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc------CCCC--CC-CceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR------KGGP--GI-TQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~------~~~~--~~-~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+++|+|..-..+ ..+..+|.+++|+|+++...... .... .. ..+.++|.||+|+... ...
T Consensus 41 ~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 118 (169)
T cd04158 41 KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSV 118 (169)
T ss_pred CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCH
Confidence 467889999999421111 12345799999999987532110 0111 11 2578999999999754 344
Q ss_pred HHHHHHHHhhC--C--CCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 140 AVMERDALRMR--D--GGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 140 ~~~~~~l~~~~--p--~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+++.+.++... . ..+++++||++|.|++++++++.+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 44444442111 1 23688999999999999999998876543
No 54
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=5.5e-08 Score=75.14 Aligned_cols=86 Identities=21% Similarity=0.178 Sum_probs=57.0
Q ss_pred eecCceEEEEEeCCCCCCC-ccCC-CCCCCceeEEEEecCCCCCcccccHHHHHHHH-----HhhC-CCCCEEEEeccCC
Q 029893 92 RELADYIIYIIDVSGGDKI-PRKG-GPGITQADLLVINKTDLASAIGADLAVMERDA-----LRMR-DGGPFIFAQVKHG 163 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~~~-~~~~-~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l-----~~~~-p~a~i~~~Sa~~g 163 (186)
++.+|++++|+|+.+.... .... ......+.++|+||+|+.+.. ...+...... +..+ +..+++++||++|
T Consensus 32 ~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~ 110 (190)
T cd01855 32 SPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKG 110 (190)
T ss_pred ccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCC
Confidence 3467999999999875421 1111 112345789999999998652 2222222222 2222 2347999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029893 164 LGVEEIVNHILQAWE 178 (186)
Q Consensus 164 ~gi~~l~~~i~~~~~ 178 (186)
.|+++|++++.+.++
T Consensus 111 ~gi~eL~~~l~~~l~ 125 (190)
T cd01855 111 WGVEELINAIKKLAK 125 (190)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998876
No 55
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.76 E-value=1.9e-08 Score=76.27 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=66.1
Q ss_pred cCCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc---c---CCC---CCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP---R---KGG---PGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~---~---~~~---~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+.||+|.. .. .+..+..+|.+++|+|+++..... . ... ..-..+.++|.||+|+.+. ...
T Consensus 51 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 128 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKP 128 (168)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCH
Confidence 35778999999931 10 112345689999999998753211 0 010 1123579999999999754 333
Q ss_pred HHHHHHHH--hhC-CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDAL--RMR-DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~--~~~-p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+++.+.++ ..+ ...+++++||++|+|+++++++|.+
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 129 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 44444432 112 1237899999999999999999864
No 56
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=1.4e-08 Score=76.18 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=58.1
Q ss_pred ecCceEEEEEeCCCCCCCcc----CCCCC--CCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCH
Q 029893 93 ELADYIIYIIDVSGGDKIPR----KGGPG--ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV 166 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~----~~~~~--~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi 166 (186)
..+|++++|+|+..+..... .+... ...+.++|+||+|+.++ .+.......+++..+.. ++++||+++.|+
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~ 83 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVTARWVKILSKEYPTI-AFHASINNPFGK 83 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHHHHHHHHHhcCCcEE-EEEeeccccccH
Confidence 45899999999987532211 11111 12578999999999876 44555555555544433 688999999999
Q ss_pred HHHHHHHHHHHH
Q 029893 167 EEIVNHILQAWE 178 (186)
Q Consensus 167 ~~l~~~i~~~~~ 178 (186)
++|++++.++..
T Consensus 84 ~~L~~~l~~~~~ 95 (157)
T cd01858 84 GSLIQLLRQFSK 95 (157)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 57
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.75 E-value=3.4e-08 Score=73.36 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=65.0
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc------c---CCC--CCCCceeEEEEecCCCCCcccc
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP------R---KGG--PGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~------~---~~~--~~~~~adiivlNK~Dl~~~~~~ 137 (186)
.+..+.+++|+|..- . ....+..+|.+++|+|+++..... . ... ..-..+.++|+||+|+.+. .
T Consensus 43 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~ 120 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--L 120 (162)
T ss_pred CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--C
Confidence 467788999999310 0 011234689999999998754210 0 111 1124689999999999865 3
Q ss_pred cHHHHHHHHH--hhC-CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 138 DLAVMERDAL--RMR-DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 138 ~~~~~~~~l~--~~~-p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
...++...++ ... ...+++++||++|.|+++++++|.+
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 3333333332 111 1236899999999999999999864
No 58
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.75 E-value=1.9e-08 Score=76.18 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
++.+.+++|+|..--. ...+..+|.+++|+|++....... ........+.++|+||+|+.+. ...+
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~ 134 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHH
Confidence 5678999999931101 112346899999999987532110 0111134588999999999765 3344
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++.+.++.. ....+++++||++|.|++++++++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 135 EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 444444321 23468999999999999999998753
No 59
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=4.4e-08 Score=73.39 Aligned_cols=79 Identities=16% Similarity=0.046 Sum_probs=55.0
Q ss_pred ceEEEEEeCCCCCCCccC-----CCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 96 DYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~~-----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
|++++|+|+..+...... .......+.++|+||+|+.++ .+.......+++.. ..+++++||++|.|+++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 678999999775432211 112235689999999999865 44433333344333 4679999999999999999
Q ss_pred HHHHHHH
Q 029893 171 NHILQAW 177 (186)
Q Consensus 171 ~~i~~~~ 177 (186)
+.+.+..
T Consensus 78 ~~i~~~~ 84 (155)
T cd01849 78 SAFTKQT 84 (155)
T ss_pred HHHHHHh
Confidence 9887653
No 60
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.74 E-value=2.8e-08 Score=73.07 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=67.1
Q ss_pred cCCcEEEEecCCCeeE-Ee----------eeeecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCccccc
Q 029893 72 FKADLLLCESGGDNLA-AN----------FSRELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-~~----------~~~~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
.+..+.+++|+|..-. .. .....+|++++|+|+........ .+......+.++|+||+|+.+. ..
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~--~~ 124 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPD--SE 124 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCc--cc
Confidence 3567899999994211 10 01234799999999986443211 1111345789999999999876 33
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
. .......+++++||+++.|+++|++++.+.+
T Consensus 125 ~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 L-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred c-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2 2233457999999999999999999988754
No 61
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.73 E-value=1.6e-08 Score=75.42 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=65.4
Q ss_pred cCCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc---c------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~---~------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|.. .. ....+..+|.+++|+|+++..... . .....-..+.++|+||+|+.+. ...
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~ 118 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--LSE 118 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--CCH
Confidence 35778999999931 10 111234689999999998743211 0 0011124689999999999765 233
Q ss_pred HHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.++...+.... ...+++++||++|.|++++++++.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 33433332111 1247999999999999999999864
No 62
>PRK09866 hypothetical protein; Provisional
Probab=98.73 E-value=2.8e-08 Score=88.97 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCeeEE-e-e------eeecCceEEEEEeCCCCCCCcc----CCCCCCC--ceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLAA-N-F------SRELADYIIYIIDVSGGDKIPR----KGGPGIT--QADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~-~-~------~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~--~adiivlNK~Dl~~~~~~~ 138 (186)
...+|||+|+|+.-.. . + ....+|++++|+|+..+..... +...... .+.++|+||+|+.+.....
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 4789999999963211 1 1 1235799999999987432111 1112223 3889999999997532122
Q ss_pred HHHHHHHHHh-----hCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 139 LAVMERDALR-----MRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 139 ~~~~~~~l~~-----~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.+.+...++. ..+...|+++||++|.|++.|++.+.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 4444444432 335789999999999999999999987
No 63
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.72 E-value=6.3e-08 Score=75.33 Aligned_cols=109 Identities=19% Similarity=0.146 Sum_probs=71.3
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc------------CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR------------KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~------------~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
....+.|.+|+|..-- .+..+..++.+++|+|.+....... .....-..|.++|+||+|+.+...
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~ 127 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA 127 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc
Confidence 3567889999993100 1122356899999999987532110 111123457899999999974321
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
...+++.+..+.. ...+++++||++|.|++++++++.+.+....
T Consensus 128 ~~~~~~~~~~~~~-~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 128 KDGEQMDQFCKEN-GFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred cCHHHHHHHHHHc-CCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3344454444443 3368999999999999999999998765543
No 64
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.72 E-value=7.9e-08 Score=71.46 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+-|.+|+|..--. ...+..+|.+++|+|.++..... ......-..|.++|+||+|+.+......+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE 127 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHH
Confidence 4556789999931101 12234579999999987643211 01111124578999999999764212222
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
......+..+ .+++++||++|.|++++++++.+.
T Consensus 128 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 128 EGQALARQWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred HHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 2222223332 689999999999999999998764
No 65
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.71 E-value=3.6e-08 Score=74.98 Aligned_cols=102 Identities=21% Similarity=0.175 Sum_probs=66.4
Q ss_pred cCCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+++++|.. .. ....+..+|.+++|+|+++...... .....-..+.++++||+|+.+. ...
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~ 134 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTP 134 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCH
Confidence 36789999999931 10 1122356899999999987543210 0111124578999999999764 233
Q ss_pred HHHHHHHHh---hCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDALR---MRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~~---~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+++.+.+.. .+...+++++||++|.|+++++++|.+
T Consensus 135 ~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 AEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 444444321 122347999999999999999999864
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.69 E-value=9.5e-08 Score=71.27 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=67.0
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--cC-------CCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--RK-------GGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~~-------~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+-+++|+|..--. ...+..+|.+++|+|+.+..... .. .......|.++|+||+|+.+......+
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~ 126 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTE 126 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHH
Confidence 4567789999931100 11223578999999998743211 00 011124578999999999764212223
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
......+.. ..+++++||++|.|++++++++.+.+..
T Consensus 127 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 127 EGKELARQW--GCPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred HHHHHHHHc--CCEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 333333433 3799999999999999999999877653
No 67
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.68 E-value=1.2e-07 Score=75.34 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--C-C-----CCCCCceeEEEEecCCCCC--------
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--K-G-----GPGITQADLLVINKTDLAS-------- 133 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~-~-----~~~~~~adiivlNK~Dl~~-------- 133 (186)
.+.+.|.+|+|-..- .+..+..+|.+|+|+|+++...... . + ...-..+.++|.||+||.+
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~ 122 (220)
T cd04126 43 PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQE 122 (220)
T ss_pred EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccc
Confidence 567889999993110 1122456899999999987532110 0 0 0112347899999999975
Q ss_pred -----------cccccHHHHHHHHHhhCC------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 134 -----------AIGADLAVMERDALRMRD------------GGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 134 -----------~~~~~~~~~~~~l~~~~p------------~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
......++.....++.+. ..+++++||++|.|++++|..+.+....
T Consensus 123 ~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 123 KDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 111123344444444331 2589999999999999999998865543
No 68
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.67 E-value=4.6e-08 Score=72.64 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=67.2
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCC------ccC---CCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKI------PRK---GGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~------~~~---~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+.+.+++|+|...- .+.....++.+++++|..+.... ... .......+.++|+||+|+.+......
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~ 125 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSS 125 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCH
Confidence 3567889999992100 01122346888999998764311 001 11124568899999999976311233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.......+.. ..+++++||++|+|++++++++.+.+.
T Consensus 126 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 126 EEAANLARQW--GVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHh--CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3333333433 368999999999999999999987664
No 69
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.67 E-value=6.7e-08 Score=81.18 Aligned_cols=101 Identities=22% Similarity=0.318 Sum_probs=68.1
Q ss_pred CcEEEEecCCCeeEE--------ee--eeecCceEEEEEeCCCCC--CCc----------cCCCC-CCCceeEEEEecCC
Q 029893 74 ADLLLCESGGDNLAA--------NF--SRELADYIIYIIDVSGGD--KIP----------RKGGP-GITQADLLVINKTD 130 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~--------~~--~~~~ad~~v~VvDa~~~~--~~~----------~~~~~-~~~~adiivlNK~D 130 (186)
..+.|++++|+.-.+ .| .++.++++++|+|++..+ +.. ..+.. ....+.++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 678999999941000 01 122478999999998642 110 11211 23568999999999
Q ss_pred CCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 131 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+.++ ...+...+.+.+.. ..+++++||++++|++++++++.+.+
T Consensus 285 L~~~--~~~~~~~~~l~~~~-~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDE--EELAELLKELKKAL-GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCCh--HHHHHHHHHHHHHc-CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9876 44555555554333 25899999999999999999998765
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.65 E-value=1.9e-07 Score=72.93 Aligned_cols=106 Identities=13% Similarity=0.006 Sum_probs=67.0
Q ss_pred CCcEEEEecCCCee----EEe-------eeeecCceEEEEEeCCCCCCCcc--C-------CC--CCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNL----AAN-------FSRELADYIIYIIDVSGGDKIPR--K-------GG--PGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l----~~~-------~~~~~ad~~v~VvDa~~~~~~~~--~-------~~--~~~~~adiivlNK~D 130 (186)
.+.+.|+||+|..- ... ..+..+|++++|+|+++...... . .. ..-..|.++|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 46788999999420 000 11345799999999987643210 0 00 012358899999999
Q ss_pred CCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 131 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+........+...+..++. ...+++++||++|.|++++|+.+.+..-.
T Consensus 128 l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 128 QQRHRFAPRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred ccccccccHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 9654212222232222222 25799999999999999999988865443
No 71
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.64 E-value=1e-07 Score=74.72 Aligned_cols=105 Identities=22% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+-|.+|+|..- . .+..++.+|.+++|+|.++...... .+ ...-..+.++|.||+||.+......+.
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~ 127 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQ 127 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHH
Confidence 57788999999310 0 1123457899999999988643211 00 001235789999999997542112222
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..+..++. ...+++++||++|.|++++|+++.+.+.
T Consensus 128 ~~~~a~~~-~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 128 GEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 33333332 2368999999999999999999987653
No 72
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.64 E-value=1.6e-07 Score=70.16 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+-|.+|+|..- . .+..+..+|.+++|+|.+...... ......-..|.++++||+|+.+......+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE 127 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHH
Confidence 45667899999311 0 011234579999999987643211 01111123588999999999764222223
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
......++.+ .+++++||++|.|+++++.++.+.+
T Consensus 128 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 128 QGQNLARQWG--CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 3333333332 5899999999999999999998754
No 73
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.64 E-value=1.1e-07 Score=70.64 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+.++||+|..-- ....+..+|.+++|+|.++..... ..+...-..+.++|+||+|+.... ...+
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~ 126 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTRE 126 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHH
Confidence 467899999993110 111234579999999987653211 112223345789999999998431 2334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
...+..+.. ..+++++||++|.|++++++++.+.
T Consensus 127 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 127 EGLKFARKH--NMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHHHHc--CCEEEEEecCCCCCHHHHHHHHHHh
Confidence 444444433 4689999999999999999988754
No 74
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.63 E-value=5.1e-08 Score=73.60 Aligned_cols=103 Identities=12% Similarity=-0.038 Sum_probs=66.8
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCCCC----C-CceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGGPG----I-TQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~~----~-~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
....+.+.+|+|...- ....+..+|.+|+|+|.++...... .+... . ..|.++|.||+|+... .....
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~--~~~~~ 124 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR--KVKAK 124 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc--cCCHH
Confidence 4578899999993110 1112235799999999987643211 11000 1 5688999999999744 22122
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..+..+ . ...+++++||++|.|++++++++.+.+.
T Consensus 125 ~~~~~~-~-~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 125 QITFHR-K-KNLQYYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred HHHHHH-H-cCCEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 222222 2 2468999999999999999999987654
No 75
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.63 E-value=1e-07 Score=70.87 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=67.5
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---------cCCCC----CCCceeEEEEecCCCCCcc
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---------RKGGP----GITQADLLVINKTDLASAI 135 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~----~~~~adiivlNK~Dl~~~~ 135 (186)
....+-|.+|+|..- ..+..+..+|.+++|+|+++..... ..+.. ....+.++|+||+|+.++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 126 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR 126 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc
Confidence 357788999999310 0112234689999999998753211 01111 1345789999999997432
Q ss_pred cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 136 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 136 ~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
....+......++.. .+++++||++|.|++++++++.+.+
T Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 127 AVSEDEGRLWAESKG--FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ccCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123344444444432 6899999999999999999987654
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.63 E-value=8.7e-08 Score=71.79 Aligned_cols=103 Identities=16% Similarity=0.050 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|.||+|-..- ....+..+|.+++|+|+++...... .+ ......+.++|+||+|+.+......+.
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 130 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEE 130 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHH
Confidence 367899999992100 0112345799999999987532111 11 011234789999999997652223333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
..+..+. ....+++++||++|.|++++++++.+.
T Consensus 131 ~~~~~~~-~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 131 ACTLAEK-NGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHH-cCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333 334578999999999999999998764
No 77
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.63 E-value=8.6e-08 Score=71.86 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=64.0
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc---c------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~---~------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
....+.+.+|+|...- .+..+..+|.+++|+|+++..... . .....-..+.++++||+|+.+. ...
T Consensus 42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 119 (159)
T cd04150 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSA 119 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCH
Confidence 3567889999993110 111245689999999998743211 0 0001113578999999999754 233
Q ss_pred HHHHHHHH--hh-CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDAL--RM-RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~--~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+++...+. .. .....++++||++|.|+++++++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 33333331 11 12346789999999999999999864
No 78
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.63 E-value=1.4e-07 Score=71.95 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=65.6
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc------CC-CC-C-CCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR------KG-GP-G-ITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~------~~-~~-~-~~~adiivlNK~Dl~~~~~~~~ 139 (186)
....+.|.+|+|..--. ...+..+|.+|+|+|+++...... .. .. . -..+.++|+||+|+.+. ...
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 132 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKA 132 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCH
Confidence 46789999999931000 112456899999999987532110 00 01 1 13478999999999754 223
Q ss_pred HHHHHHHHh--h-CCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDALR--M-RDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~--~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+++...+.- . .....++++||++|.|+++++++|.+.+
T Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 133 AEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 333333221 1 1223577899999999999999998764
No 79
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.62 E-value=6.9e-08 Score=72.58 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCcEEEEecCCCeeEE--------ee--eeecCceEEEEEeCCCCC-----CCcc----------CCCC------CCCce
Q 029893 73 KADLLLCESGGDNLAA--------NF--SRELADYIIYIIDVSGGD-----KIPR----------KGGP------GITQA 121 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~--------~~--~~~~ad~~v~VvDa~~~~-----~~~~----------~~~~------~~~~a 121 (186)
+..+.|++|+|..... .+ .+..+|.+++|+|+.... .... .+.. ....+
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 6778999999941100 01 123479999999998763 1100 0111 13568
Q ss_pred eEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 122 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 122 diivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.++|+||+|+.+. .................+++++||++|.|++++++++...
T Consensus 123 ~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDA--EELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCch--hHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999876 3333322122333355789999999999999999988654
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.62 E-value=5.4e-08 Score=73.73 Aligned_cols=103 Identities=19% Similarity=0.078 Sum_probs=63.4
Q ss_pred CcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc------CCCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 74 ADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 74 ~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~------~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
..+.+-|+.|-.. ..+..+..+|++++|+|+++...... .....-..|.++|+||+|+.+..........
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~- 132 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPD- 132 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHH-
Confidence 4566778888311 11223456899999999977533211 1111124689999999999754211111122
Q ss_pred HHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 145 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 145 ~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.+.+.....+++++||++|.|++++++.+.+..
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 133 EFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 222223233568999999999999999988764
No 81
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.62 E-value=1.4e-07 Score=73.28 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=63.6
Q ss_pred CcEEEEecCCCeeEEe------e-----eeecCceEEEEEeCCCCCCCcc-----CCC---CCCCceeEEEEecCCCCCc
Q 029893 74 ADLLLCESGGDNLAAN------F-----SRELADYIIYIIDVSGGDKIPR-----KGG---PGITQADLLVINKTDLASA 134 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~------~-----~~~~ad~~v~VvDa~~~~~~~~-----~~~---~~~~~adiivlNK~Dl~~~ 134 (186)
..+.|+||+|..-..+ + ....+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+.
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 4899999999310000 1 1234799999999987543211 111 1123578999999999876
Q ss_pred ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 135 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.... .... ....+++++||++|.|++++++++.+.
T Consensus 169 --~~~~---~~~~--~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 169 --EELE---ERLE--AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred --HHHH---HHhh--cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 3322 2222 345689999999999999999998764
No 82
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.62 E-value=2e-07 Score=72.50 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCC----C-CCCceeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGG----P-GITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~----~-~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
...+.|++|+|...- ....+..++.+++|+|+++...... .+. . .-..+.++|+||+|+.+......+..
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~ 133 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDA 133 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHH
Confidence 356788999993110 1112345789999999987543210 010 0 01247799999999976421222333
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
....+..+ .+++++||++|.|++++++++.+.+-..+.
T Consensus 134 ~~~~~~~~--~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 134 YKFAGQMG--ISLFETSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHcC--CEEEEEECCCCcCHHHHHHHHHHHHHHhhh
Confidence 33334433 689999999999999999999887765443
No 83
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.62 E-value=1.3e-07 Score=72.57 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc------CC--CCC-CCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR------KG--GPG-ITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~------~~--~~~-~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+.+++|-.--. +..+..+|.+|+|+|+++.+.... .. ... -..+-++++||+|+... ...
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~ 136 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNA 136 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCH
Confidence 46788999999921000 112456899999999987543210 01 011 13578999999999765 444
Q ss_pred HHHHHHHHhhC--CC-CCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMR--DG-GPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~--p~-a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+++.+.+.-.+ +. ..++++||++|+|+++++++|.+.+.
T Consensus 137 ~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred HHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 55554443111 11 24668999999999999999987653
No 84
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.61 E-value=4.6e-08 Score=85.52 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=67.9
Q ss_pred CcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCC-CCCcc-CC---CCCCCc-eeEEEEecCCCCCcccccHHHHHH
Q 029893 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGG-DKIPR-KG---GPGITQ-ADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~-~~~~~-~~---~~~~~~-adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
..+.||+|+|-. ...+. ....+|.+++|+|+.++ ...+. .+ ...+.. +-++++||+|+++. ...++..+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~--~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKE--AQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCH--HHHHHHHH
Confidence 357899999921 00111 11246999999999875 22221 11 112333 35789999999875 44444444
Q ss_pred HHHhh-----CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 DALRM-----RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~l~~~-----~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+++. ....+++++||++|.|++.|+++|.+.+|.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 44332 246799999999999999999999976654
No 85
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=2.5e-07 Score=70.38 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=56.3
Q ss_pred ecCceEEEEEeCCCCCCCcc-CCCCC-CCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 93 ELADYIIYIIDVSGGDKIPR-KGGPG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~-~~~~~-~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
..+|++++|+|+..+..... ..... ...+.++|+||+|+.++ .......+.++.. ..+++.+||+++.|++++.
T Consensus 18 ~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~--~~~vi~iSa~~~~gi~~L~ 93 (171)
T cd01856 18 KLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADP--KKTKKWLKYFESK--GEKVLFVNAKSGKGVKKLL 93 (171)
T ss_pred hhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCCh--HHHHHHHHHHHhc--CCeEEEEECCCcccHHHHH
Confidence 35799999999976543221 11111 24578999999999755 3333333333332 3478999999999999999
Q ss_pred HHHHHHHH
Q 029893 171 NHILQAWE 178 (186)
Q Consensus 171 ~~i~~~~~ 178 (186)
+.+.+.++
T Consensus 94 ~~l~~~l~ 101 (171)
T cd01856 94 KAAKKLLK 101 (171)
T ss_pred HHHHHHHH
Confidence 99998764
No 86
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.61 E-value=6.3e-08 Score=71.97 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+.+|+|..- .. ...+..+|.+++|+|+++...... .....-..+.++|+||+|+... ...+
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 120 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAE 120 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHH
Confidence 46788999999311 00 112345799999999987542110 0111124689999999999654 2333
Q ss_pred HHHHHHH--hhC--CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDAL--RMR--DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~--~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++...++ ... +..+++++||++|+|+++++++|.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 4433332 111 2347999999999999999998864
No 87
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.61 E-value=9.9e-08 Score=73.33 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=67.5
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.++.+.+++++|..-.. ...+..+|.+++|+|+++.+.... .....-..+.++|+||+|+... ...
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~ 136 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASE 136 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCH
Confidence 46788999999931100 112346899999999987532110 0111134589999999998654 344
Q ss_pred HHHHHHHHhh----------CCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 140 AVMERDALRM----------RDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 140 ~~~~~~l~~~----------~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+++.+.+.-. .+...++++||++|+|++++++|+.+.
T Consensus 137 ~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 137 DELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 4555444211 123469999999999999999999753
No 88
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.60 E-value=8.3e-08 Score=81.33 Aligned_cols=97 Identities=25% Similarity=0.298 Sum_probs=63.6
Q ss_pred cCCcEEEEecCCC-e-eE----Eee-----eeecCceEEEEEeCCCCCCCcc-----CCCCC---CCceeEEEEecCCCC
Q 029893 72 FKADLLLCESGGD-N-LA----ANF-----SRELADYIIYIIDVSGGDKIPR-----KGGPG---ITQADLLVINKTDLA 132 (186)
Q Consensus 72 ~~~D~iiIEtsG~-~-l~----~~~-----~~~~ad~~v~VvDa~~~~~~~~-----~~~~~---~~~adiivlNK~Dl~ 132 (186)
.+..+.|++|+|. . +. ..| .+..+|++++|+|++++..... ..... -..+.++|+||+|+.
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 3568999999994 1 00 011 1235799999999987643211 11111 245789999999998
Q ss_pred CcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 133 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+. ..... ... ...+++++||++|.|+++|+++|.+.
T Consensus 315 ~~--~~v~~----~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 315 DE--PRIER----LEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred Ch--HhHHH----HHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 65 33221 111 12468999999999999999998764
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.60 E-value=7.6e-08 Score=71.79 Aligned_cols=104 Identities=22% Similarity=0.238 Sum_probs=66.0
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
....+.+.+|+|... . ....+..+|.+++|+|.++..... ..+.. ....+.++|+||+|+.+........
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 129 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQ 129 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHH
Confidence 457899999999311 0 011234579999999998753211 11100 1246889999999997652112122
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.. .+...+ ..+++++||++|.|++++++.+.+..
T Consensus 130 ~~-~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 130 AQ-AFAQAN-QLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HH-HHHHHc-CCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 22 222222 35799999999999999999988753
No 90
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.59 E-value=1.7e-07 Score=72.32 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc--cCC----C--CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP--RKG----G--PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~----~--~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+-|.+|+|.. .. ....+..+|++++|+|+++..... ..+ . ..-..+.++|+||+|+..+.....++
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~ 128 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRED 128 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHH
Confidence 4677889999931 00 111234579999999998753211 000 0 11245789999999997542122233
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.....+.. ..+++++||++|.|++++++++.+.+...
T Consensus 129 ~~~l~~~~--~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 129 GERLAKEY--GVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 33333332 35899999999999999999999877655
No 91
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.59 E-value=1.9e-07 Score=72.45 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=70.2
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CCCceeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
...+-|.+|+|..- . .+..+..+|.+++|+|.++..... ..+.. .-..+.++|.||.||........++.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~ 133 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQA 133 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHH
Confidence 46777899999310 0 112245689999999998754311 01100 01357899999999976422234445
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
....++. ..+++++||++|.|++++|+++.+.+...
T Consensus 134 ~~~a~~~--~~~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 134 QAYAERN--GMTFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred HHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 5555544 35899999999999999999998766543
No 92
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.59 E-value=1.1e-07 Score=75.35 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=69.2
Q ss_pred cCCcEEEEecCCCe-eEEeeeee-cCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDN-LAANFSRE-LADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~~~~~-~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|++|+|.. ......+. .+|.+++|+|+++..... . ........+.++|.||+|+.+......+
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 127 (221)
T cd04148 48 EESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQ 127 (221)
T ss_pred EEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHH
Confidence 35678899999932 11122233 689999999998753211 0 1111234688999999999765211222
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...+ +...+ ..+++++||++|.|++++++++.+.+..
T Consensus 128 ~~~~-~a~~~-~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 128 EGRA-CAVVF-DCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred HHHH-HHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 2222 22222 3689999999999999999999987753
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.59 E-value=8.4e-08 Score=71.88 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=67.0
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
..+.+-+.+|+|... . .+..+..+|.+++|+|+++..... ..+.. .-..+.++|+||+|+.+. ...+
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~---~~~~ 123 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS---VTQK 123 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh---HHHH
Confidence 356788999999311 0 112235679999999998753311 11110 013588999999998543 1222
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.....+.. ..+++++||++|.|++++++.+.+...+.
T Consensus 124 ~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 124 KFNFAEKH--NLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 22222222 36899999999999999999998776554
No 94
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.59 E-value=1.3e-07 Score=85.09 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc----CCCCCCCce-eEEEEecCCCCCcccccHHHHHH
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGITQA-DLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~a-diivlNK~Dl~~~~~~~~~~~~~ 144 (186)
+..+.|++++|-. .... .....+|++++|+|+.++...+. ........+ -++|+||+|++++ ...+...+
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~--~~~~~~~~ 126 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE--EEIKRTEM 126 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH--HHHHHHHH
Confidence 4678899999921 0000 11235799999999998643221 111223455 8999999999876 43333333
Q ss_pred ----HHHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 145 ----DALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 145 ----~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.++... +..+++++||++|+|++++++++.+..+...
T Consensus 127 ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 127 FMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred HHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 333321 3579999999999999999999988776544
No 95
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.59 E-value=6.5e-08 Score=74.41 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCcc--CCCC------CCCceeEEEEecCCCCCccc-cc--
Q 029893 73 KADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIG-AD-- 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~------~~~~adiivlNK~Dl~~~~~-~~-- 138 (186)
...+-|.+|+|.. .. .+..+..+|++++|+|.++...... .+.. .-..+ ++|+||+||..... .+
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~ 126 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE 126 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhh
Confidence 4678889999931 00 1223456899999999987543211 1100 11234 78999999963210 11
Q ss_pred -HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 139 -LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 139 -~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.....+.+.+..+ ++++++||++|.|++++++++.+.+...+
T Consensus 127 ~~~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 127 EITKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred hhHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 1111122222233 68999999999999999999988776543
No 96
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.59 E-value=1.8e-07 Score=69.43 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc------c---CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP------R---KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~------~---~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.++|++|..-. ....+..+|.+++|+|++...... . .....-..+.++++||+|+... ...+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~ 119 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSVS 119 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc--cCHH
Confidence 678999999993110 011234579999999998763211 0 1111124588999999999876 4455
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++.+.++.. ....+++++||++|.|+++++++|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 555555432 23458999999999999999998864
No 97
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.59 E-value=1.4e-07 Score=72.41 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++++|..-.. ...+..+|.+++|+|+++..... .........+.++++||+|+... ...+
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~~ 139 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEE 139 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCHH
Confidence 5678899999921000 11234579999999998643211 01111234689999999999754 3455
Q ss_pred HHHHHHHhh--------------CCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 141 VMERDALRM--------------RDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 141 ~~~~~l~~~--------------~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
++.+.++.. ....+++++||++|+|++++++++.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 555555321 112468999999999999999999875
No 98
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.58 E-value=2.1e-07 Score=71.44 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=66.4
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc------CC-CC--CCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR------KG-GP--GITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~------~~-~~--~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+.+|+|..-- ....+..+|.+|+|+|+++...... .. .. .-..+.++|+||.|+.+. ...
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 136 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MST 136 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCH
Confidence 4578899999993110 1123456899999999976432110 00 01 113478999999999754 233
Q ss_pred HHHHHHHHhhC-C--CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMR-D--GGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~~-p--~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++...+.... + ..+++++||++|.|++++++++.+.+..
T Consensus 137 ~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 137 TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 33433332110 1 1256789999999999999999876653
No 99
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.58 E-value=1.5e-07 Score=71.54 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=68.5
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.+++|+|..-- .......++.+++++|.++..... .........+.++++||+|+........+
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~ 127 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE 127 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHH
Confidence 467789999993100 111123468899999988753211 01111234589999999999754211222
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
......+.. ..+++++||++|.|++++++++.+.+.....
T Consensus 128 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 128 EGKELAESW--GAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 222222322 3689999999999999999999987775543
No 100
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.58 E-value=2.1e-07 Score=81.89 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCee-EE-------ee--eeecCceEEEEEeCCCCC---CC----------ccCCC----------CCCC
Q 029893 73 KADLLLCESGGDNL-AA-------NF--SRELADYIIYIIDVSGGD---KI----------PRKGG----------PGIT 119 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~~-------~~--~~~~ad~~v~VvDa~~~~---~~----------~~~~~----------~~~~ 119 (186)
+..+.|++++|+.- +. .+ .++.+|++++|+|++..+ +. ...+. ....
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 45789999999410 00 01 123479999999997532 11 01121 1235
Q ss_pred ceeEEEEecCCCCCcccccH-HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 120 QADLLVINKTDLASAIGADL-AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 120 ~adiivlNK~Dl~~~~~~~~-~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.+.++|+||+|+.+. .++ +.+...+... ..+++++||++++|+++|+.++.+.++..+.
T Consensus 285 kP~IVVlNKiDL~da--~el~e~l~~~l~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 285 RPRLVVLNKIDVPDA--RELAEFVRPELEAR--GWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CCEEEEEECccchhh--HHHHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 789999999999765 333 2233334333 3589999999999999999999998877653
No 101
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.58 E-value=1.1e-07 Score=86.05 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=68.3
Q ss_pred CcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCce-eEEEEecCCCCCcccccHHHHHHH
Q 029893 74 ADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~a-diivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
.-+-||+|+|-. .... .....+|++++|+|+.++...+.. ....+..+ .++|+||+|++++ ...+...+.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~--~~~~~v~~e 128 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE--ARIAEVRRQ 128 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH--HHHHHHHHH
Confidence 346799999921 0000 112357999999999886433211 11123344 3699999999875 444444444
Q ss_pred HHhh----C-CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 146 ALRM----R-DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 146 l~~~----~-p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+++. + ...+++++||++|+|+++|+++|.+..+..
T Consensus 129 i~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 129 VKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred HHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 4332 2 347999999999999999999998876544
No 102
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.57 E-value=2.3e-07 Score=73.05 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--c-------CCCC--CCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--R-------KGGP--GITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~--~~~~adiivlNK~Dl~~~~~~~ 138 (186)
.+.+.|.+|+|...- .+..+..+|.+++|+|+++..... . .... ....+.++|.||+|+.+.....
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~ 128 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK 128 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC
Confidence 467889999993110 111245689999999998753211 0 0111 1123578899999997542222
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+...+..+. + ..+++++||++|.|++++++++.+.+..
T Consensus 129 ~~~~~~~~~~-~-~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 129 DDKHARFAQA-N-GMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHH-c-CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2333333333 3 3589999999999999999999887654
No 103
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=1.1e-07 Score=82.14 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=72.3
Q ss_pred CcEEEEecCCCeeEEeeeee--c--CceEEEEEeCCCCCCCccC---C-CCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 74 ADLLLCESGGDNLAANFSRE--L--ADYIIYIIDVSGGDKIPRK---G-GPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~~~--~--ad~~v~VvDa~~~~~~~~~---~-~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
+-+=+|+|+| .+.-.+... + +...++||||++|-+.+.- | .-....-.+=|+||+||..+ +.+++.+.
T Consensus 76 Y~lnlIDTPG-HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A---dpervk~e 151 (603)
T COG0481 76 YVLNLIDTPG-HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA---DPERVKQE 151 (603)
T ss_pred EEEEEcCCCC-ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC---CHHHHHHH
Confidence 4555799999 443333221 2 2678999999998654321 1 11112235789999999865 56667777
Q ss_pred HHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 146 ALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 146 l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+.... +....+.+|||||.|++++++.|.+..|.-++
T Consensus 152 Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 152 IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 76653 45678899999999999999999988876554
No 104
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.57 E-value=1.5e-07 Score=70.23 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=64.4
Q ss_pred CCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc--cC-------CCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP--RK-------GGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~--~~-------~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+-|.+|+|.. .. .+..+..+|.+++|+|.++..... .. .......+.++|+||+|+.+.......
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~ 127 (163)
T cd04176 48 PSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSA 127 (163)
T ss_pred EEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHH
Confidence 3456689999921 10 111234579999999998754211 00 111234688999999999754212222
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
......+.. ..+++++||++|.|++++++++.+.+
T Consensus 128 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 128 EGRALAEEW--GCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHh--CCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 222222222 35899999999999999999987653
No 105
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.57 E-value=1.9e-07 Score=70.93 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+-|.+|+|..- . .+..+..+|.+++|+|.++...... .....-..|.++|+||+|+.+...-..+
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~ 128 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE 128 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH
Confidence 46778899999310 0 1112345799999999987643211 0111123588999999999754212222
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+.....++. ..+++++||++|.|++++|+++.+.+-.
T Consensus 129 ~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 129 EGRNLAREF--NCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHh--CCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 333333333 4699999999999999999999876543
No 106
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.57 E-value=3.2e-07 Score=68.20 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--cCC-------CCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--RKG-------GPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~~~-------~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+.+++|+|..--. ...+..+|.+++|+|+++..... ..+ ...-..+.++++||+|+.+......+
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~ 128 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSRE 128 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHH
Confidence 4567789999931000 11234579999999998753211 001 01123578999999999765211223
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
...+..+.. ..+++++||++|.|++++++++.+..
T Consensus 129 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 129 EGQELARKL--KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHc--CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 333333432 35899999999999999999987654
No 107
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.56 E-value=4.1e-07 Score=73.86 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=78.9
Q ss_pred CCC---cccCCcccccccCcchhHhhhhhc--CCcEEEEecCCCeeEEeeeee---------cC----ceEEEEEeCCCC
Q 029893 46 TGG---CPHAAIREDISINLGPLEELSNLF--KADLLLCESGGDNLAANFSRE---------LA----DYIIYIIDVSGG 107 (186)
Q Consensus 46 ~Gc---cc~l~~r~d~~~~~~~l~~l~~~~--~~D~iiIEtsG~~l~~~~~~~---------~a----d~~v~VvDa~~~ 107 (186)
||+ |-++. ..-++++..+.++. .+|+++|+|+| ....|.+. +| -++++|+|..+.
T Consensus 88 NGgI~TsLNLF-----~tk~dqv~~~iek~~~~~~~~liDTPG--QIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs 160 (366)
T KOG1532|consen 88 NGGIVTSLNLF-----ATKFDQVIELIEKRAEEFDYVLIDTPG--QIEAFTWSASGSIITETLASSFPTVVVYVVDTPRS 160 (366)
T ss_pred CcchhhhHHHH-----HHHHHHHHHHHHHhhcccCEEEEcCCC--ceEEEEecCCccchHhhHhhcCCeEEEEEecCCcC
Confidence 777 44442 23345566666554 68899999999 33333221 11 356899998664
Q ss_pred CCCccC-----CC-C---CCCceeEEEEecCCCCCccc-----ccHHHHHHHHH-------------------hhCCCCC
Q 029893 108 DKIPRK-----GG-P---GITQADLLVINKTDLASAIG-----ADLAVMERDAL-------------------RMRDGGP 154 (186)
Q Consensus 108 ~~~~~~-----~~-~---~~~~adiivlNK~Dl~~~~~-----~~~~~~~~~l~-------------------~~~p~a~ 154 (186)
...... |. . .-+.+-++|.||+|+.+..- ...+.+.+.+. +.+....
T Consensus 161 ~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lr 240 (366)
T KOG1532|consen 161 TSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLR 240 (366)
T ss_pred CCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCc
Confidence 322110 10 0 12457899999999987520 12223333333 2234568
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 155 FIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 155 i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.+.+|+.||.|+++++..+.+...++.
T Consensus 241 tv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 241 TVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred eEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999998887666554
No 108
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.56 E-value=3.2e-07 Score=68.85 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.+.+|+|..-- ....+..+|.+++|+|.++..... ..+. ..-..+.++|.||+|+.++.....++
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~ 129 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE 129 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHH
Confidence 467789999993100 112235689999999998754211 0110 01134789999999997653222334
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..+..+.. ..+++++||++|.|+++++..+.+.+
T Consensus 130 ~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 130 AKQFADEN--GLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44444433 36899999999999999998887654
No 109
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.56 E-value=2.2e-07 Score=70.47 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CC-------CCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KG-------GPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~-------~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+-|.+|+|..- .....++.+|.+++|+|+++...... .+ ...-..+.++|.||+|+.+......+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~ 141 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEE 141 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHH
Confidence 46788999999210 01122356899999999987532111 11 00113468999999999764222233
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+..+..++. ..+++++||++|.|++++++++.+.+
T Consensus 142 ~~~~~~~~~--~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 142 QAKALADKY--GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 344444443 35899999999999999999998654
No 110
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.56 E-value=1e-07 Score=74.32 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=57.5
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCce-eEEEEecCCCCCcccccHHH--
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADLAV-- 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~a-diivlNK~Dl~~~~~~~~~~-- 141 (186)
.+..+.||+|+|.. .... .....+|.+++|+|+..+...+.. .......+ .++++||+|+..+. ...+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~-~~~~~~~ 141 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE-ELLELVE 141 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH-HHHHHHH
Confidence 46678999999931 0000 112357999999999886433211 11223445 56889999997541 22232
Q ss_pred --HHHHHHhh--C-CCCCEEEEeccCCCCH
Q 029893 142 --MERDALRM--R-DGGPFIFAQVKHGLGV 166 (186)
Q Consensus 142 --~~~~l~~~--~-p~a~i~~~Sa~~g~gi 166 (186)
+.+.++.. + ..+|++++||++|.++
T Consensus 142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 142 MEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 33333332 2 2489999999999985
No 111
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.56 E-value=2.7e-07 Score=69.28 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=64.2
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--cC-------CC--CCCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--RK-------GG--PGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~~-------~~--~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
...+-+++|+|..--. ...+..+|.+++|+|.++..... .. .. ..-..|.++|.||+|+.+.....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 127 (165)
T cd04140 48 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVS 127 (165)
T ss_pred EEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeec
Confidence 4678899999931101 11234578999999998754321 00 00 01245889999999997642111
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.+......+. ...+++++||++|.|++++++++.+.
T Consensus 128 ~~~~~~~~~~--~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 128 SNEGAACATE--WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHHHHHHH--hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 2222222222 34689999999999999999998753
No 112
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.56 E-value=3.4e-07 Score=71.10 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=65.9
Q ss_pred CcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCc-ccccHH
Q 029893 74 ADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASA-IGADLA 140 (186)
Q Consensus 74 ~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~-~~~~~~ 140 (186)
..+.|++|+|..- . ....+..+|.+++|+|+++...... .+...-..+.++|+||+|+.+. .....+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~ 126 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK 126 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH
Confidence 5677899999311 0 1122346899999999987533210 1111234689999999999763 111122
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
...+.. ......+++++||++|.|++++++++.+...
T Consensus 127 ~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 127 DALSTV-ELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 222222 2233468999999999999999999987654
No 113
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.56 E-value=2.1e-07 Score=69.29 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=68.2
Q ss_pred cCCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc--cCC------CCCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP--RKG------GPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~------~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.++|++|-. .. .+.....+|.+++|+|+++..... ..+ ...-..+.++++||+|+.+......+
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 127 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTE 127 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHH
Confidence 35667899999921 00 111234579999999998754221 011 01123568999999998854223444
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
......+..+ .+++++||++|.|++++++++.+.+
T Consensus 128 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 128 EAQEYADENG--LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444455443 6899999999999999999998765
No 114
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2e-07 Score=81.35 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=72.3
Q ss_pred cCCcEEEEecCCCeeEEe-ee---eecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 72 FKADLLLCESGGDNLAAN-FS---RELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-~~---~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
..+-+.||+|+| .-+.+ +. ...+|++++|||+.+|...+. .+......|-++.+||+|..+. ......
T Consensus 53 ~~~~itFiDTPG-HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~ 128 (509)
T COG0532 53 KIPGITFIDTPG-HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVK 128 (509)
T ss_pred CCceEEEEcCCc-HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHH
Confidence 357899999999 21111 11 124699999999999876543 2334466789999999999865 444455
Q ss_pred HHHHhh-------CCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 144 RDALRM-------RDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 144 ~~l~~~-------~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..+.+. .....++++||++|+|+++|++.+.-.-
T Consensus 129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 554432 2356899999999999999999776433
No 115
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.55 E-value=2.7e-07 Score=69.26 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=66.7
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--cCCCC---C---CCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--RKGGP---G---ITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~---~---~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.+.+|+|..- .....+..+|.+++|+|.++..... ..+.. + -..+.++|+||+|+.+......+.
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 128 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSER 128 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHH
Confidence 46788999999310 0112235689999999987643211 01100 0 134689999999997652112233
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+..+.. + .+++++||++|.|++++++++.+.+..
T Consensus 129 ~~~~~~~~-~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 129 GRQLADQL-G-FEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHHHHc-C-CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33333332 2 479999999999999999999887653
No 116
>PLN03118 Rab family protein; Provisional
Probab=98.54 E-value=2.8e-07 Score=72.23 Aligned_cols=106 Identities=18% Similarity=0.107 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc----------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~----------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.+.|++|+|..-- ....++.+|.+++|+|.++...... .+...-..+.++|+||+|+........
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~ 140 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR 140 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH
Confidence 467889999993110 1112345799999999987532110 011122346789999999976522222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+......+.. ..+++++||++|.|++++++++.+.+...
T Consensus 141 ~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 141 EEGMALAKEH--GCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3333333332 35899999999999999999998776543
No 117
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.54 E-value=1.9e-07 Score=69.50 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=66.7
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.|.||+|..- . .+..+..+|.+++|+|+++...... .+ ...-..+.++++||+|+.+......+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 127 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLE 127 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHH
Confidence 46778999999310 0 1112345799999999988543210 11 011235789999999997642222334
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.....+..+ .+++++||++|.|++++++++.+.
T Consensus 128 ~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 128 ASRFAQENG--LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHh
Confidence 444444433 689999999999999999998763
No 118
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.54 E-value=3.2e-07 Score=74.13 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--c---------CC------CCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--R---------KG------GPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~---------~~------~~~~~~adiivlNK~Dl~ 132 (186)
.+.+-|.||+|..- .....+..+|++++|+|.++.+... . +. ......+.++|+||+|+.
T Consensus 47 ~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 47 VYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 46677899999310 0112234579999999998753211 0 00 011346889999999997
Q ss_pred CcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 133 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.......+++.+.+... ...+++++||++|.|++++++++.+..
T Consensus 127 ~~~~v~~~ei~~~~~~~-~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 127 FPREVQRDEVEQLVGGD-ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred hccccCHHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 53223444555444432 246899999999999999999998755
No 119
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.54 E-value=2.2e-07 Score=81.15 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=67.2
Q ss_pred cCCcEEEEecCCCeeEE----------e-eeeecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCccccc
Q 029893 72 FKADLLLCESGGDNLAA----------N-FSRELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~----------~-~~~~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
.+..+.+++|+|..-.. . .....+|++++|+|++++..... .+...-..+.++|+||+|+.+. ..
T Consensus 261 ~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~--~~ 338 (449)
T PRK05291 261 DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGE--ID 338 (449)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhcccc--ch
Confidence 45678999999942100 0 01234799999999987643211 1111224578999999999865 22
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.. ..+..+++++||++|.|++++++++.+.++.
T Consensus 339 ~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 339 LE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred hh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 21 1234689999999999999999999988764
No 120
>PRK04213 GTP-binding protein; Provisional
Probab=98.54 E-value=4.6e-07 Score=70.22 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=52.5
Q ss_pred CceEEEEEeCCCCCCCccCC---------------CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCC----CCCE
Q 029893 95 ADYIIYIIDVSGGDKIPRKG---------------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRD----GGPF 155 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~~~~~---------------~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p----~a~i 155 (186)
++++++|+|+.........+ ......+.++|+||+|+.+......+++.+.+....+ ..++
T Consensus 91 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (201)
T PRK04213 91 ILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDII 170 (201)
T ss_pred heEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcE
Confidence 47889999986543221111 1113468899999999976511122223222221001 1368
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHH
Q 029893 156 IFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 156 ~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++||++| |++++++++.+.+++
T Consensus 171 ~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 171 APISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred EEEecccC-CHHHHHHHHHHhhcC
Confidence 99999999 999999999987654
No 121
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.54 E-value=3.5e-07 Score=70.51 Aligned_cols=106 Identities=20% Similarity=0.128 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCC-----CCCceeEEEEecCCCCCcccc----
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIGA---- 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~-----~~~~adiivlNK~Dl~~~~~~---- 137 (186)
..++.|.+|+|..- ..+..+..+|.+++|+|.++..... ..+.. .-..+.++|.||+||.+....
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~ 126 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDL 126 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHH
Confidence 46788999999411 1223345689999999988754321 01111 114578999999999765210
Q ss_pred --------cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 138 --------DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 --------~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..++..+..++. ...+++++||++|.|++++|+++.+..-.
T Consensus 127 ~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 127 QRYGKHTISYEEGLAVAKRI-NALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hhccCCCCCHHHHHHHHHHc-CCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 011122222222 23689999999999999999999876653
No 122
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.53 E-value=1.3e-07 Score=71.16 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=66.2
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---CCCC-----CCCceeEEEEecCCCCCcccc-cH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIGA-DL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---~~~~-----~~~~adiivlNK~Dl~~~~~~-~~ 139 (186)
...++.+++|+|..-.. ...+..+|.+++|+|+.+...... .+.. ....+.++|+||+|+.+.... ..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~ 124 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGL 124 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHH
Confidence 45788999999932110 112345799999999887543211 1110 124588999999999875211 11
Q ss_pred HHHHHHHH-hhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDAL-RMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~-~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+.....+. +.....+++++||++|.|++++++.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 125 EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 22222222 222224899999999999999999887653
No 123
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.53 E-value=3.4e-07 Score=75.09 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=58.8
Q ss_pred ecCceEEEEEeCCCCCCCccC-CCCCC-CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 93 ELADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~-~~~~~-~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
..+|++++|+|+..+...... ....+ ..+.++|+||+|++++ .......+.+++ ...+++++||+++.|+++|.
T Consensus 20 ~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~--~~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 20 KLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADP--AVTKQWLKYFEE--KGIKALAINAKKGKGVKKII 95 (276)
T ss_pred hhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCH--HHHHHHHHHHHH--cCCeEEEEECCCcccHHHHH
Confidence 357999999999765332111 11111 4578999999999865 334443334433 23578999999999999999
Q ss_pred HHHHHHHHHhh
Q 029893 171 NHILQAWEAST 181 (186)
Q Consensus 171 ~~i~~~~~~~~ 181 (186)
+.+.+.++...
T Consensus 96 ~~i~~~~~~~~ 106 (276)
T TIGR03596 96 KAAKKLLKEKN 106 (276)
T ss_pred HHHHHHHHHhh
Confidence 99998887654
No 124
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.53 E-value=4.7e-07 Score=67.79 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+-++||+|... .. ...+..+|.+++|+|+++...... .+. ..-..+.++|.||+|+..+.....++
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~ 129 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSE 129 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHH
Confidence 45678899999311 00 112345899999999987532110 010 01235789999999997652222233
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.....+.. ..+++++||++|.|++++++++.+.+.
T Consensus 130 ~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 130 AQEFADEL--GIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHc--CCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 33333332 468999999999999999999987653
No 125
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.52 E-value=3.3e-07 Score=68.88 Aligned_cols=103 Identities=19% Similarity=0.126 Sum_probs=67.1
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.+.||+|..-- ....+..+|.+++|+|+++...... .+. ..-..+.++|.||+|+.+......++
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 130 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEE 130 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH
Confidence 457788999993110 1112346899999999977543211 010 01234789999999998642223334
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.....+.. ..+++++||++|.|++++++++.+.+
T Consensus 131 ~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 131 GEALADEY--GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44444433 35899999999999999999998765
No 126
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.51 E-value=1.3e-07 Score=70.26 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=65.9
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...++.|.+|+|..- . ....+..+|.+++|+|+++..... ..+.. .-..+.++|+||+|+.++.....++
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~ 128 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEE 128 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHH
Confidence 357889999999210 0 111234679999999987754211 11110 1245789999999997652122333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.....+.. ..+++++||++|.|++++++++.+
T Consensus 129 ~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 129 AEALAKRL--QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 33333433 358999999999999999999865
No 127
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.51 E-value=1e-07 Score=81.85 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=70.8
Q ss_pred hcCCcEEEEecCCCeeEE--ee----------eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDNLAA--NF----------SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~--~~----------~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~ 134 (186)
..+..+.+|+|.|+-... ++ .+..||++++|+|+..|....+ ++.....++.++|+||+|-...
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh
Confidence 456779999999942111 11 2345899999999998765332 2223455799999999997633
Q ss_pred ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 135 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+. ...+ .-++ ...+++++||.+|.|+.+|++.+.+.+|
T Consensus 128 --e~--~~~e-fysl-G~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 128 --EE--LAYE-FYSL-GFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --hh--hHHH-HHhc-CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 11 1111 2222 3568999999999999999999999874
No 128
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.51 E-value=4.8e-07 Score=66.84 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.++|++|... ..+..+..+|.+++|+|.++...... .+ ......+.++|+||+|+.+......+.
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~ 127 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSE 127 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence 45688899999210 01112345799999999987643110 00 011146899999999998642122333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..+..+.. ..+++++|+++|.|++++++++.+.+
T Consensus 128 ~~~~~~~~--~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 128 AEEYAKSV--GAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 44434433 36799999999999999999987653
No 129
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.50 E-value=2.8e-07 Score=71.82 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=67.0
Q ss_pred cCCcEEEEecCCCee-EEeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCc--------
Q 029893 72 FKADLLLCESGGDNL-AANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASA-------- 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~-------- 134 (186)
....+.|.+|+|..- ..+..+..+|.+++|+|.++..... ..+... -..+.++|.||+||.+.
T Consensus 64 ~~v~l~iwDTaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 64 VSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred EEEEEEEEeCCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhc
Confidence 467788999999311 1223456789999999998754321 111111 13478999999999641
Q ss_pred -----------ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 135 -----------IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 135 -----------~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
..-..++..+..++.+ ++++++||++|.|++++|+.+.+
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCCHHHHHHHHHH
Confidence 1112233444444443 58999999999999999998865
No 130
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.50 E-value=8.3e-07 Score=68.42 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCC-------CC--CCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKG-------GP--GITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~-------~~--~~~~adiivlNK~Dl~~~~~~~ 138 (186)
.+.+-|++|+|..- . ....+..+|.+++|+|.++..... ..+ .. ....+.++|+||+|+.+.....
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~ 125 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS 125 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC
Confidence 35678899999310 0 112234689999999997753211 011 11 1235789999999997542112
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
........+.. ..+++++||++|.|++++++++.+.+.
T Consensus 126 ~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 126 TEEGAALARRL--GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred HHHHHHHHHHh--CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 22233333333 258999999999999999999987554
No 131
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.50 E-value=1.1e-06 Score=76.15 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCeeEE--------ee--eeecCceEEEEEeCCCCC--CC----------ccCCCC-CCCceeEEEEecC
Q 029893 73 KADLLLCESGGDNLAA--------NF--SRELADYIIYIIDVSGGD--KI----------PRKGGP-GITQADLLVINKT 129 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~--------~~--~~~~ad~~v~VvDa~~~~--~~----------~~~~~~-~~~~adiivlNK~ 129 (186)
+..++|++++|+.-.+ .| ..+.++++++|+|++..+ +. ...+.. ....+.+||+||+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 4678999999942111 11 123468999999997531 11 011222 2467899999999
Q ss_pred CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
|+.+. .+.+.. +.+..+ .+++++||++++|+++|++++.+.++..
T Consensus 285 DL~~~----~e~l~~-l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEA----EENLEE-FKEKLG-PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCC----HHHHHH-HHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 98433 122222 222222 5899999999999999999999887654
No 132
>PTZ00369 Ras-like protein; Provisional
Probab=98.50 E-value=8.2e-07 Score=68.37 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+-|.+|+|..--. +..+..+|.+++|+|.++.+... . .+...-..+.++|.||+|+.+...-...
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~ 131 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG 131 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 3456679999932111 11234579999999998754211 0 1111123478999999998654211222
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
......+.. ..+++++||++|.|++++++++.+.+.
T Consensus 132 ~~~~~~~~~--~~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 132 EGQELAKSF--GIPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred HHHHHHHHh--CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 233333333 358999999999999999999976554
No 133
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.50 E-value=6.5e-07 Score=66.16 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=62.8
Q ss_pred CcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccHHH
Q 029893 74 ADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
..+-+++|+|..--. +..+..++.+++|+|..+..... . .+...-..+.++|+||+|+.+.. .....
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~ 127 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-VSSRQ 127 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-ecHHH
Confidence 345578999931100 11233578899999987643211 0 11112245789999999997641 22333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.....+.. ..+++++||++|.|++++++++.+.
T Consensus 128 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 128 GQDLAKSY--GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred HHHHHHHh--CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 33333333 3589999999999999999998764
No 134
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.49 E-value=1.7e-07 Score=72.47 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=58.7
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc-ccHHHHH
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG-ADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~-~~~~~~~ 143 (186)
.+..+.|++|+|.. ... ...+..+|.+++|+|++++..... ........+.++|+||+|+.+... ...+++.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 46788999999931 000 112345799999999987532111 111123457899999999975421 1123333
Q ss_pred HHHHhh-----CCCCCEEEEeccCCCCHHHH
Q 029893 144 RDALRM-----RDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 144 ~~l~~~-----~p~a~i~~~Sa~~g~gi~~l 169 (186)
+.++.. ....+++++||++|.|+.++
T Consensus 143 ~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 143 DLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHhCCccccCccCEEEeehhcccccccc
Confidence 333221 12468999999999777444
No 135
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.49 E-value=1.6e-07 Score=71.92 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCccc----c
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG----A 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~~----~ 137 (186)
...+.|.||+|..- ..+..+..+|.+++|+|.++...... .+... -..|.++|+||+|+.+... .
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v 127 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKV 127 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCc
Confidence 46788999999310 01223456899999999987543211 11110 1357899999999975410 1
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
..++..+..+.. ...+++++||++|.|++++++.+.+.+..++
T Consensus 128 ~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 128 TPAQAESVAKKQ-GAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CHHHHHHHHHHc-CCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 123333333332 2238999999999999999999987776654
No 136
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.49 E-value=3.6e-07 Score=83.80 Aligned_cols=102 Identities=18% Similarity=0.276 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
+..+.|++|+|-. ... ...+..+|++++|+|+.++...+. ........+.++++||+|+.+. ..+++.+.
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~---~~e~v~~e 370 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA---NTERIKQQ 370 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc---CHHHHHHH
Confidence 4778999999921 000 012235799999999988643221 1122245689999999999764 23334344
Q ss_pred HHh-------hCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 146 ALR-------MRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 146 l~~-------~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
++. +....|++++||++|.|+++|++++..+.
T Consensus 371 L~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 371 LAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 332 12346899999999999999999987654
No 137
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.49 E-value=4.7e-07 Score=67.83 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCc--cCC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIP--RKG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~--~~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.+.+++|... .. ...+..+|.+++|+|++...... ..+ ...-..+.++|+||+|+.++. .....
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~-~i~~~ 133 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR-EVSQQ 133 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-ccCHH
Confidence 35678889999311 00 11234579999999998653211 011 111235679999999997652 11123
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
....+.+..+ .+++++||++|.|++++++++.+.
T Consensus 134 ~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 134 RAEEFSDAQD-MYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HHHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 3334444443 689999999999999999999875
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.48 E-value=3.8e-07 Score=68.69 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+.++.+++++|.. ... ...+..+|.+++|+|+++..... .........+.++++||+|+.+. ...+
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~ 134 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA--APAE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC--CCHH
Confidence 5778899999931 100 11234578999999998642211 01111234688999999999765 4455
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.+.+.++-. ....+++++||++|+|++++++|+.+
T Consensus 135 ~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 135 EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 554443211 11225789999999999999999864
No 139
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.48 E-value=2.4e-07 Score=83.51 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCccC--C--CCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~~--~--~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|++++...+.. + ......+.++|+||+|+.+. ..+...+.
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~---~~~~~~~e 145 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSA---DPERVKKE 145 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCcc---CHHHHHHH
Confidence 36788999999310 0 01123457999999999987543211 1 11123478999999999754 22333333
Q ss_pred HHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 146 ALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 146 l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+++.. +..+++++||++|.|++++++++.+.+|.-
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 43332 223689999999999999999999887754
No 140
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.48 E-value=3.6e-07 Score=68.82 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc--cCCCC------CCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP--RKGGP------GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~------~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.|.+|+|.. .. .......+|.+++|+|+++..... ..+.. .-..+.++|.||+|+.++.....++
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 131 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEE 131 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH
Confidence 4678899999931 00 111234579999999998643211 01110 1235789999999998542223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.....++. ..+++++||++|+|+++++.++.+...
T Consensus 132 ~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 132 GEAFAKEH--GLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44444443 468999999999999999999887664
No 141
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.47 E-value=5.1e-07 Score=68.03 Aligned_cols=105 Identities=19% Similarity=0.142 Sum_probs=66.4
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCC-----CCCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~-----~~~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+.|.+|+|... ..+..+..+|++++|+|.++..... ..+.. .-..+.++|+||+|+.++..
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~ 123 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRE 123 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhh
Confidence 356789999999321 1122344689999999998753221 11111 12458899999999976310
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
...++..+..+.. ...+++++||++|.|++++++.+.+..
T Consensus 124 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 124 LSKQKQEPVTYEQGEALAKRI-GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhcccCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 0111222223333 334899999999999999999887654
No 142
>COG2262 HflX GTPases [General function prediction only]
Probab=98.47 E-value=5.3e-07 Score=76.61 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=67.7
Q ss_pred CCcEEEEecCCC-e-----eEEee-----eeecCceEEEEEeCCCCCCCcc-----C---CCCCCCceeEEEEecCCCCC
Q 029893 73 KADLLLCESGGD-N-----LAANF-----SRELADYIIYIIDVSGGDKIPR-----K---GGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 73 ~~D~iiIEtsG~-~-----l~~~~-----~~~~ad~~v~VvDa~~~~~~~~-----~---~~~~~~~adiivlNK~Dl~~ 133 (186)
+..+++-+|+|- . +...| +...+|+++.|+|++++..... . -...-..|.++|+||+|+++
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 577999999992 1 11111 1224799999999999732110 0 01112358999999999987
Q ss_pred cccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 134 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+ .. ....+....| ..+++||++|.|++.|.+.|.+.++.
T Consensus 319 ~--~~---~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 319 D--EE---ILAELERGSP--NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred c--hh---hhhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 6 33 2223333334 67899999999999999999988874
No 143
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.46 E-value=4.2e-07 Score=67.48 Aligned_cols=101 Identities=22% Similarity=0.198 Sum_probs=64.8
Q ss_pred CcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCC----CCC--CCceeEEEEecCCCCCcccccHHHH
Q 029893 74 ADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKG----GPG--ITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~----~~~--~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
..+.++||+|.... .......+|.+++|+|..+..... ..+ ... -..+.++++||+|+........+..
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~ 128 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEG 128 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHH
Confidence 46789999993110 011234579999999997653211 011 011 1468999999999965421223333
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
....+.. ..+++++||++|.|++++++++.+.
T Consensus 129 ~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 129 EKKAKEL--NAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHh--CCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 3333333 3789999999999999999998764
No 144
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.46 E-value=4e-07 Score=82.17 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCcEEEEecCCCeeEEe-----eeeecCceEEEEEeCCCCCCCccC--C--CCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 73 KADLLLCESGGDNLAAN-----FSRELADYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~-----~~~~~ad~~v~VvDa~~~~~~~~~--~--~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
.+.+.|++|+|. ... .++..+|.+++|+|++++.+.+.. + ......+-++|+||+|+.+. ..+...
T Consensus 73 ~~~lnLiDTPGh--~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a---~~~~v~ 147 (600)
T PRK05433 73 TYILNLIDTPGH--VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA---DPERVK 147 (600)
T ss_pred cEEEEEEECCCc--HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc---cHHHHH
Confidence 567889999992 110 123357999999999987543211 1 11134578999999999754 223333
Q ss_pred HHHHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 144 RDALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 144 ~~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+.++... +..+++++||++|.|++++++++.+.+|.-
T Consensus 148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 3444332 223699999999999999999999887754
No 145
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.46 E-value=3.3e-07 Score=79.05 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCe-eEEe-e-eeecCceEEEEEeCCCCC-CCcc-CC---CCCCC-ceeEEEEecCCCCCcccccH----
Q 029893 73 KADLLLCESGGDN-LAAN-F-SRELADYIIYIIDVSGGD-KIPR-KG---GPGIT-QADLLVINKTDLASAIGADL---- 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~-~-~~~~ad~~v~VvDa~~~~-~~~~-~~---~~~~~-~adiivlNK~Dl~~~~~~~~---- 139 (186)
+..+.|++|.|-. .... + ....+|.+++|+|+.++. ..+. .+ ...+. .+-++++||+|+.++ ...
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~--~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK--EKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH--HHHHHHH
Confidence 4568899999921 0001 1 112469999999999764 2111 11 11122 246888999999875 332
Q ss_pred HHHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+++.+.++.. ....+++++||++|.|+++|++++...++
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2223323222 12468999999999999999999998765
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.45 E-value=3.7e-07 Score=65.44 Aligned_cols=101 Identities=25% Similarity=0.282 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.++.++|+.|...... .....+|.+++|+|+..+.... .........+.++++||+|+.+. ...
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~--~~~ 120 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE--RVV 120 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc--cch
Confidence 367899999999321111 1234578999999998864321 11223345689999999999876 333
Q ss_pred HHHH-HHHHhhCCCCCEEEEeccCCCCHHHHHHHHH
Q 029893 140 AVME-RDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 174 (186)
Q Consensus 140 ~~~~-~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~ 174 (186)
.... .......+..+++++|++++.|++++++++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 121 SEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 2221 2223334568999999999999999999875
No 147
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.45 E-value=3.9e-07 Score=68.23 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=74.8
Q ss_pred cCCcEEEEecCCCe---eEEeeeeecCceEEEEEeCCCCCCCcc--CCCC------CCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDN---LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~---l~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~------~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...|.=|-+|+|-. --.|..++.++..++|+|.++.+..+. .|.. .-+.+-+||.||+||.+++....+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~q 139 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQ 139 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHH
Confidence 36788889999921 125777888999999999998765332 2211 134578999999999876433334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+..+..++. .|.++.|||+.+.|+.++|+.+.+.+
T Consensus 140 eAe~YAesv--GA~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 140 EAEAYAESV--GALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred HHHHHHHhh--chhheecccccccCHHHHHHHHHHHH
Confidence 455555544 57999999999999999999877544
No 148
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.44 E-value=6.6e-07 Score=66.43 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=67.7
Q ss_pred CcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CCCC------CCCceeEEEEecCCCCCcccccHHHH
Q 029893 74 ADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~------~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
..+.+++++|... .....+..+|.+++|+|+.+...... .+.. .-..+.++++||+|+........+..
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~ 128 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEA 128 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHH
Confidence 5677999999310 01122345799999999987543211 0100 02468999999999876421233444
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+..+.. ..+++++||++|.|++++++++.+.+.
T Consensus 129 ~~~~~~~--~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 129 EAFAEEH--GLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred HHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4444433 357999999999999999999988764
No 149
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.44 E-value=7.9e-07 Score=69.96 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--C-------CCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~-------~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+.|.+|+|...- ....+..+|.+++|+|.++...... . ....-..+.++|.||+|+.+......+
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~ 130 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTRE 130 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHH
Confidence 457889999993110 1122346799999999987532110 0 111112346888999999764212223
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
......+. .+ .+++++||++|.|++++++++.+.+...
T Consensus 131 ~~~~~~~~-~~-~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 131 EAEKLAKD-LG-MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHH-hC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 33333333 33 7899999999999999999999866543
No 150
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.44 E-value=5.2e-07 Score=67.41 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.+.+++|... . .+..+..++.+++|+|+++..... ..+. ..-..+.++|+||+|+.+......++
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~ 130 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEE 130 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHH
Confidence 46788999999311 0 112234578899999998643211 0110 01135789999999997642122333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.....+. + ..+++++||++|.|++++++++.+.+
T Consensus 131 ~~~~~~~-~-~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 131 AKAFAEK-N-GLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHH-c-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333333 2 46899999999999999999987653
No 151
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.44 E-value=5.5e-07 Score=70.50 Aligned_cols=104 Identities=10% Similarity=-0.031 Sum_probs=67.3
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
....+-|.+|+|..- ..+..++.+|.+++|+|.+...... ..+.. .-..+.++|.||+|+.... ...+.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~~~ 120 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK-VKAKS 120 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCHHH
Confidence 457788999999310 0112345689999999998864321 01110 0135789999999986431 11122
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+..+. + ..+++++||++|.|++++|+++.+.+..
T Consensus 121 -~~~~~~-~-~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 121 -ITFHRK-K-NLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred -HHHHHH-c-CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 222222 2 4689999999999999999999876643
No 152
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.44 E-value=9e-07 Score=79.66 Aligned_cols=98 Identities=14% Similarity=0.258 Sum_probs=64.0
Q ss_pred cEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHH
Q 029893 75 DLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDAL 147 (186)
Q Consensus 75 D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~ 147 (186)
.+.|++|+|-. ... ......+|++++|+|+.++...+. .+......+.++++||+|+.+. ..+++.+.++
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~ 212 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA---NPDRVKQELS 212 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHH
Confidence 78899999921 000 011235699999999987653221 1112245689999999999653 2233334433
Q ss_pred hh-------CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 148 RM-------RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 148 ~~-------~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.. ....+++++||++|+|++++++++..
T Consensus 213 ~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 213 EYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 22 12357999999999999999998864
No 153
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.43 E-value=4.6e-07 Score=81.64 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCe-eEEe---------e-eeecCceEEEEEeCCCCCCCccC--CCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDN-LAAN---------F-SRELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~---------~-~~~~ad~~v~VvDa~~~~~~~~~--~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
+..+.+++|+|.. .... + ....+|+++.|+|+++.+..... .......+.++|+||+|+.++ ...
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~--~~i 117 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEK--KGI 117 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHh--CCC
Confidence 4568899999941 1110 0 11246999999999885432111 011245689999999999755 222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..-.+.+.+.. +.|++++||++|+|++++++++.+..
T Consensus 118 ~~d~~~L~~~l-g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 118 RIDEEKLEERL-GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred hhhHHHHHHHc-CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 22223444333 36999999999999999999997653
No 154
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.43 E-value=4.2e-07 Score=68.09 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=66.9
Q ss_pred CcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCC----CC------CCCceeEEEEecCCCCCccccc
Q 029893 74 ADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKG----GP------GITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 74 ~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~----~~------~~~~adiivlNK~Dl~~~~~~~ 138 (186)
..+-+++++|...- ....+..+|.+++++|+.+..... ..+ .. .-..+.++|+||+|+..+....
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS 128 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC
Confidence 44568899993110 111234579999999997653210 000 00 1145789999999998432123
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.+......+. ....+++++||++|.|++++++++.+...+.
T Consensus 129 ~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 129 TKKAQQWCQS-NGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHH-cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444444433 3346899999999999999999998765543
No 155
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.43 E-value=4.3e-07 Score=78.53 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred CcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCCC-CCcc-C---CCCCCCc-eeEEEEecCCCCCcccccHH----
Q 029893 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGD-KIPR-K---GGPGITQ-ADLLVINKTDLASAIGADLA---- 140 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~~-~~~~-~---~~~~~~~-adiivlNK~Dl~~~~~~~~~---- 140 (186)
..+.|++|+|-. ....+ ....+|.+++|+|+.++. ..+. . ....... +-++|+||+|+.++ .+..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK--ERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc--hhHHHHHH
Confidence 568899999921 10111 112359999999999764 2211 0 1111222 46888999999875 3332
Q ss_pred HHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++...++.. ....+++++||++|.|+++|+++|...++.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 222222221 235789999999999999999999987653
No 156
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.43 E-value=8e-07 Score=66.52 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---CCC-----CCCCceeEEEEecCCCCCcccc----
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGG-----PGITQADLLVINKTDLASAIGA---- 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---~~~-----~~~~~adiivlNK~Dl~~~~~~---- 137 (186)
...+.+++|+|...- .+..+..+|++++|+|+++...... .+. .....+.++|+||+|+.+....
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 126 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL 126 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc
Confidence 567889999993210 1122345799999999987432111 000 0114688999999999866211
Q ss_pred -------cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 138 -------DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 138 -------~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
..+...+.... ....+++++||++|.|++++++++.+
T Consensus 127 ~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 127 EKGKEPITPEEGEKLAKE-IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ccCCCccCHHHHHHHHHH-hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 11222222233 33448999999999999999998864
No 157
>PRK12289 GTPase RsgA; Reviewed
Probab=98.42 E-value=8.7e-07 Score=75.08 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=54.2
Q ss_pred cCceEEEEEeCCCCCCCc---cCCC---CCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 94 LADYIIYIIDVSGGDKIP---RKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~---~~~~---~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
.+|.+++|+|+.+++... ..+. .....+.++|+||+||+++ .+.+...+.++.+ ..+++++||++|.|++
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~~~~~~~~~~~~--g~~v~~iSA~tg~GI~ 164 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TEQQQWQDRLQQW--GYQPLFISVETGIGLE 164 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HHHHHHHHHHHhc--CCeEEEEEcCCCCCHH
Confidence 469999999987643211 1111 1134578999999999876 4444444445443 3479999999999999
Q ss_pred HHHHHHHH
Q 029893 168 EIVNHILQ 175 (186)
Q Consensus 168 ~l~~~i~~ 175 (186)
+|++++..
T Consensus 165 eL~~~L~~ 172 (352)
T PRK12289 165 ALLEQLRN 172 (352)
T ss_pred HHhhhhcc
Confidence 99998753
No 158
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.42 E-value=6.9e-07 Score=67.47 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=66.3
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.++.+.+++++|..-.. ...+..+|.+++|+|++....... ........+.++|+||+|+.+. ...
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~ 118 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLG 118 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCH
Confidence 46788999999931101 122456899999999987542210 1111235689999999999765 333
Q ss_pred HHHHHHH--Hhh----CCCCCEEEEeccCC------CCHHHHHHHHHH
Q 029893 140 AVMERDA--LRM----RDGGPFIFAQVKHG------LGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l--~~~----~p~a~i~~~Sa~~g------~gi~~l~~~i~~ 175 (186)
.++.+.+ ..+ ....+++++||++| +|+++-++|+.+
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 3333322 222 12247888999998 899999999864
No 159
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.41 E-value=2.5e-07 Score=70.47 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=65.0
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCC-----CCCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~-----~~~~adiivlNK~Dl~~~~~---- 136 (186)
....+.|.+|+|... ..+..+..+|.+|+|+|.++.+.... .+.. .-..+.++|.||+||.+...
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~ 126 (174)
T cd01871 47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 126 (174)
T ss_pred EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHH
Confidence 356788999999311 11223446899999999987543211 1110 01358899999999965310
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
...++..+..++. +..+++++||++|.|++++++.+.+
T Consensus 127 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 127 LKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HhhccCCCCCHHHHHHHHHHc-CCcEEEEecccccCCHHHHHHHHHH
Confidence 0112222223333 3358999999999999999998875
No 160
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.41 E-value=9e-07 Score=66.48 Aligned_cols=103 Identities=10% Similarity=0.049 Sum_probs=66.5
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--c-------CCCC---CCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--R-------KGGP---GITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~---~~~~adiivlNK~Dl~~~~~ 136 (186)
..+.+.|.+|+|..- ..+..+..+|.+++|+|..+..... . .+.. .-..|.++|+||+|+.+..
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 130 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ- 130 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-
Confidence 356788899999210 0112234679999999987653211 0 0111 1235789999999997431
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
...++..+..++. ...+++++||++|.|+.++++++.+.
T Consensus 131 ~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 131 VSTEEAQAWCREN-GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred cCHHHHHHHHHHC-CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 2334455544543 34589999999999999999988764
No 161
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.41 E-value=8.8e-07 Score=73.06 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=58.9
Q ss_pred ecCceEEEEEeCCCCCCCccC-CCCCC-CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 93 ELADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~-~~~~~-~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
..+|+++.|+|+..+...... ....+ ..+.++|+||+||.+. ...+...+.+++. ..+++.+||+++.|+++|+
T Consensus 23 ~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~--~~~~~~~~~~~~~--~~~vi~vSa~~~~gi~~L~ 98 (287)
T PRK09563 23 KLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADP--EVTKKWIEYFEEQ--GIKALAINAKKGQGVKKIL 98 (287)
T ss_pred hhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCH--HHHHHHHHHHHHc--CCeEEEEECCCcccHHHHH
Confidence 357999999999765432211 11111 4678999999999765 3343443444332 3578999999999999999
Q ss_pred HHHHHHHHHhh
Q 029893 171 NHILQAWEAST 181 (186)
Q Consensus 171 ~~i~~~~~~~~ 181 (186)
+.+.+.++...
T Consensus 99 ~~l~~~l~~~~ 109 (287)
T PRK09563 99 KAAKKLLKEKN 109 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 162
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.40 E-value=1.1e-06 Score=71.02 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=52.5
Q ss_pred ecCceEEEEEeCCCCCCC---ccCCC---CCCCceeEEEEecCCCCCcccccHH-HHHHHHHhhCCCCCEEEEeccCCCC
Q 029893 93 ELADYIIYIIDVSGGDKI---PRKGG---PGITQADLLVINKTDLASAIGADLA-VMERDALRMRDGGPFIFAQVKHGLG 165 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~---~~~~~---~~~~~adiivlNK~Dl~~~~~~~~~-~~~~~l~~~~p~a~i~~~Sa~~g~g 165 (186)
..+|.+++|+|+.++... ...+. ..-..+.++|+||+||.++ .+.. +..+..++ ...+++++||++|+|
T Consensus 35 ~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~--~~~~~~~~~~~~~--~g~~v~~~SAktg~g 110 (245)
T TIGR00157 35 ANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD--EDMEKEQLDIYRN--IGYQVLMTSSKNQDG 110 (245)
T ss_pred ccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC--HHHHHHHHHHHHH--CCCeEEEEecCCchh
Confidence 457999999999875421 11111 1123578999999999865 2222 22333433 246899999999999
Q ss_pred HHHHHHHHH
Q 029893 166 VEEIVNHIL 174 (186)
Q Consensus 166 i~~l~~~i~ 174 (186)
++++++.+.
T Consensus 111 i~eLf~~l~ 119 (245)
T TIGR00157 111 LKELIEALQ 119 (245)
T ss_pred HHHHHhhhc
Confidence 999998875
No 163
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.40 E-value=8.2e-07 Score=68.13 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+-+.+|+|..- .....+..+|.+++|+|.++...... .+. ..-..+-++++||+|+.+........
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~ 127 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNI 127 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHH
Confidence 46778899999310 01122346899999999987543110 010 00124679999999998552112222
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.....+.. ..+++++||++|.|++++++++.+.....
T Consensus 128 ~~~~~~~~--~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 128 AKSFCDSL--NIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 22222322 34899999999999999999988776543
No 164
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.40 E-value=7.4e-07 Score=67.20 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=63.9
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCC-----CCCceeEEEEecCCCCCcccc---
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIGA--- 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~-----~~~~adiivlNK~Dl~~~~~~--- 137 (186)
....+.+.||+|..- ..+..+..+|.+++|+|..+.+... ..+.. .-..+.++|+||+|+.+....
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 126 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRE 126 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhh
Confidence 356789999999311 1122334578999999987643210 11110 014578999999998754100
Q ss_pred ---------cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 138 ---------DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 138 ---------~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
......+..+.. ...+++++||++|.|++++++++.+.
T Consensus 127 i~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 127 LAKMKQEPVKPEEGRDMANKI-GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred hhhccCCCccHHHHHHHHHHc-CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 011112222222 23489999999999999999998764
No 165
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.39 E-value=6.9e-07 Score=66.87 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCeeEEe----eeeecCceEEEEEeCCCCCCCc---------cCCCC-CCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLAAN----FSRELADYIIYIIDVSGGDKIP---------RKGGP-GITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~----~~~~~ad~~v~VvDa~~~~~~~---------~~~~~-~~~~adiivlNK~Dl~~~~~~~ 138 (186)
...+-|++|+|...... ..+..+|.+++|+|+++..... ..... ....|.++|+||+|+.......
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 125 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS 125 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC
Confidence 45677899999321001 1223579999999998764321 01111 2246789999999986542112
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCC-CCHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHG-LGVEEIVNHILQAW 177 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g-~gi~~l~~~i~~~~ 177 (186)
.+......+..+ .+++++||++| .|++++|+.+.+.+
T Consensus 126 ~~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 TEEGEKLASELG--CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HHHHHHHHHHcC--CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 233333333333 68999999999 59999999998754
No 166
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.39 E-value=4.2e-07 Score=69.30 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~~~----- 136 (186)
.+.+.|.+|+|..-- .+..+..+|.+++|+|.++..... ..+... -..|.++|.||+|+.+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l 127 (175)
T cd01874 48 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKL 127 (175)
T ss_pred EEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHh
Confidence 467889999993210 122344689999999998754321 111110 1357899999999865410
Q ss_pred -------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 137 -------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 137 -------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
...++..+..++ .+..+++++||++|.|++++|+.+.+
T Consensus 128 ~~~~~~~v~~~~~~~~a~~-~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 128 AKNKQKPITPETGEKLARD-LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hhccCCCcCHHHHHHHHHH-hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 011112222222 33468999999999999999998876
No 167
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.39 E-value=1.4e-06 Score=66.03 Aligned_cols=105 Identities=19% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CC--CceeEEEEecCCCCCccccc--
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GI--TQADLLVINKTDLASAIGAD-- 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~--~~adiivlNK~Dl~~~~~~~-- 138 (186)
...+-|.||+|..- ..+..+..+|++++|+|+++..... ..+.. .. ..+.++|.||+|+.+.....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~ 127 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALM 127 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccccc
Confidence 45788999999310 0112345689999999997743211 11110 00 13578999999997542111
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+......++. ..+++++||++|.|++++++.+.+...+
T Consensus 128 ~~~~~~~~~~~--~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 128 EQDAIKLAAEM--QAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11222222332 3589999999999999999999887754
No 168
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.38 E-value=2e-06 Score=64.72 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=65.0
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCc--cC-------CCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIP--RK-------GGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~--~~-------~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+-+++|+|.. ... ...+..++.+++|+|.++..... .. ....-..|.++++||+|+.+......+
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~ 127 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRE 127 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHH
Confidence 3567889999931 100 11223468889999988753211 00 011124578899999999765212223
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
......+. ....+++++||++|.|++++++++.+.+
T Consensus 128 ~~~~~~~~-~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 128 DGVSLSQQ-WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHHH-cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33332233 3346899999999999999999998654
No 169
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.38 E-value=4.1e-07 Score=70.36 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCC-----CCCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~-----~~~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+-|.+|+|-.- ..+..+..+|.+|+|+|.++...... .+.. .-..+.++|.||.||.+...
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~ 128 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKK 128 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHH
Confidence 457788999999310 11223456899999999987543210 1110 01358899999999965410
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
...++..+..++. ...+++++||++|.|++++|+++.+.+-..
T Consensus 129 ~~~~~~~~v~~~~~~~~a~~~-~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 129 LKEQGQAPITPQQGGALAKQI-HAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred HhhccCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 0011122222222 234899999999999999999998766543
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.38 E-value=1.2e-06 Score=80.92 Aligned_cols=101 Identities=15% Similarity=0.269 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCeeEEee---eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 73 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~---~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
+..+.|++|+|-.--... ....+|++++|+|+.++...+. .+......+.++++||+|+.+. ..+.+...
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a---~~e~V~~e 412 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGA---NPDRVKQE 412 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccccc---CHHHHHHH
Confidence 456789999992100000 1234699999999988643221 1122245689999999999653 22333333
Q ss_pred HHh-------hCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 146 ALR-------MRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 146 l~~-------~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+.. +....+++++||++|.|+++|++++...
T Consensus 413 L~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 413 LSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 322 2234689999999999999999998753
No 171
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.37 E-value=2.9e-07 Score=72.90 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=57.3
Q ss_pred cCCcEEEEecCCCe-eEEe-e-eeecCceEEEEEeCCCCCC-------Ccc----CCCCCCC-ceeEEEEecCCCCCc--
Q 029893 72 FKADLLLCESGGDN-LAAN-F-SRELADYIIYIIDVSGGDK-------IPR----KGGPGIT-QADLLVINKTDLASA-- 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~-~-~~~~ad~~v~VvDa~~~~~-------~~~----~~~~~~~-~adiivlNK~Dl~~~-- 134 (186)
.++.+.|++|+|.. .... + ....+|.+++|+|+..+.. ... ....... .+.++++||+|+.+.
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~ 154 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNW 154 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccc
Confidence 47789999999931 0000 1 1234799999999988521 000 0011123 356779999999842
Q ss_pred ccccHHHHHHHH----HhhC---CCCCEEEEeccCCCCHH
Q 029893 135 IGADLAVMERDA----LRMR---DGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 135 ~~~~~~~~~~~l----~~~~---p~a~i~~~Sa~~g~gi~ 167 (186)
.....+.+.+.+ +... ...+++++||++|.|++
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 112233344333 3322 13689999999999986
No 172
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.37 E-value=3.5e-06 Score=60.85 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=74.0
Q ss_pred cEEEEecCCCeeEEeee-------eecCceEEEEEeCCCCCCC-ccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHH
Q 029893 75 DLLLCESGGDNLAANFS-------RELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGADLAVMERDA 146 (186)
Q Consensus 75 D~iiIEtsG~~l~~~~~-------~~~ad~~v~VvDa~~~~~~-~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l 146 (186)
|.-.|+|.|.-+..+.. ...+|+++.|-.+.++... +..+...+.++.|-|++|+||+++ ++++..+.++
T Consensus 38 d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed--~dI~~~~~~L 115 (148)
T COG4917 38 DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAED--ADISLVKRWL 115 (148)
T ss_pred CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccch--HhHHHHHHHH
Confidence 66789999942222211 1246888888887776442 334444556679999999999987 7888888898
Q ss_pred HhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 147 LRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 147 ~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
++.. ..+||.+|+....|+++|++++...
T Consensus 116 ~eaG-a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 116 REAG-AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHcC-CcceEEEeccCcccHHHHHHHHHhh
Confidence 8875 5699999999999999999988654
No 173
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.36 E-value=1.8e-06 Score=65.00 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=64.0
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CC-----CCCCCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KG-----GPGITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~-----~~~~~~adiivlNK~Dl~~~~~----- 136 (186)
.+.+-+++|+|... ..+..+..+|++++|+|..+...... .+ ...-..+.++|+||+|+.+...
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~ 126 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARL 126 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHH
Confidence 45677899999321 11223345799999999887533110 01 0122457899999999865410
Q ss_pred -------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 -------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 -------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
-..++.....+. ....+++++||++|.|++++++.+.+.
T Consensus 127 ~~~~~~~v~~~~~~~~~~~-~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 127 NDMKEKPVTVEQGQKLAKE-IGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hhccCCCCCHHHHHHHHHH-cCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 011222223333 334579999999999999999988764
No 174
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.36 E-value=1.6e-06 Score=82.02 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred CcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCccc--c-------
Q 029893 74 ADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG--A------- 137 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~--~------- 137 (186)
|.+.|++|+|-. .. .......+|++++|+|++++...+.. .......+-++++||+|+.+... .
T Consensus 526 p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~ 605 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLN 605 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhh
Confidence 458999999921 00 01122357999999999876432211 11123458899999999975311 0
Q ss_pred ---c----HHHHHHH-------HH-------------hhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 138 ---D----LAVMERD-------AL-------------RMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 138 ---~----~~~~~~~-------l~-------------~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+ ..++... +. .+....+++++||+||+|+++|+.++....+
T Consensus 606 ~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 606 FNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0 1111111 11 1223579999999999999999998865433
No 175
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.36 E-value=1.2e-06 Score=78.78 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=64.1
Q ss_pred CcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccc---------
Q 029893 74 ADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA--------- 137 (186)
Q Consensus 74 ~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~--------- 137 (186)
+.+.|++|+|-.- . ....+..+|.+++|+|++++...+.. .......+.++++||+|+.+....
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 3489999999210 0 00122457999999999886432211 112234578999999999742100
Q ss_pred ---cHHHH-----------HHHHH-------------hhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 138 ---DLAVM-----------ERDAL-------------RMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 138 ---~~~~~-----------~~~l~-------------~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+...+ ...+. ......+++++||+||+|+++|++++....
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00000 01111 223457999999999999999999886533
No 176
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.36 E-value=1.4e-06 Score=65.29 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+-|.+|+|..-- .+..+..+|.+++|+|.++...... .+ ...-..+.++|.||.|+.++.....++
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~ 127 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQ 127 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence 456778899993100 1112345799999999887532110 10 011235789999999997652112223
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.....+..+ .+++++||++|.|++++|+++.+.
T Consensus 128 ~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 128 GNKLAKEYG--MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 333333332 689999999999999999998764
No 177
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.36 E-value=7.4e-07 Score=68.33 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=67.6
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+-|.+|+|..- ..+..+..++.+++|+|.++..... ..+..+ -..+-++|.||+||.+...
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~ 126 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLAD 126 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhh
Confidence 357788999999311 1223345689999999998754321 111111 1357899999999965310
Q ss_pred ------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 137 ------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 137 ------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
...++..+..++. ...+++++||++|.|++++|+.+.+.+
T Consensus 127 ~~~~~~v~~~~~~~~a~~~-~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 127 HPGASPITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ccCCCCCCHHHHHHHHHHc-CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 1223333333333 233699999999999999999998754
No 178
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.36 E-value=1e-06 Score=67.74 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=64.2
Q ss_pred CcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCCC---CC--CCceeEEEEecCCCCCccc--c--cH
Q 029893 74 ADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKGG---PG--ITQADLLVINKTDLASAIG--A--DL 139 (186)
Q Consensus 74 ~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~~---~~--~~~adiivlNK~Dl~~~~~--~--~~ 139 (186)
..+-|.+|.|..-. ....+..+|.+++|+|.++..... ..+. .+ -..+.++|+||+|+.+... . ..
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~ 129 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDF 129 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCH
Confidence 45568899993110 111234689999999997753221 0111 11 1357899999999975310 0 11
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
....+..+.. ..+++++||++|.|++++++++.+.+-
T Consensus 130 ~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 130 HDVQDFADEI--KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222222 368999999999999999999987663
No 179
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=1.5e-06 Score=67.23 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCcEEEEecCCC----eeEEeeeeecCceEEEEEeCCCCCCCc--cCCCCC------C-CceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIP--RKGGPG------I-TQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~----~l~~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~~------~-~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+-+=+=+|+|= ++ .|..++.+.+.|+|+|.++..... .+|... - ..-.++|.||.||++++....
T Consensus 70 ~vrLQlWDTAGQERFrsl-ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~ 148 (221)
T KOG0094|consen 70 TVRLQLWDTAGQERFRSL-IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI 148 (221)
T ss_pred EEEEEEEecccHHHHhhh-hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH
Confidence 455556678882 12 344567889999999998754321 122111 1 123578899999999843333
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++-....++++ +..+++||++|.|+.++|..|...+|.
T Consensus 149 eEg~~kAkel~--a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 149 EEGERKAKELN--AEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHHHHHHHhC--cEEEEecccCCCCHHHHHHHHHHhccC
Confidence 33344445554 699999999999999999999887764
No 180
>PRK11058 GTPase HflX; Provisional
Probab=98.35 E-value=1.7e-06 Score=75.10 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=62.3
Q ss_pred cEEEEecCCCeeEE-e------e-----eeecCceEEEEEeCCCCCCCcc-----CCC---CCCCceeEEEEecCCCCCc
Q 029893 75 DLLLCESGGDNLAA-N------F-----SRELADYIIYIIDVSGGDKIPR-----KGG---PGITQADLLVINKTDLASA 134 (186)
Q Consensus 75 D~iiIEtsG~~l~~-~------~-----~~~~ad~~v~VvDa~~~~~~~~-----~~~---~~~~~adiivlNK~Dl~~~ 134 (186)
.++|++|+|. +.. | | ....+|++++|+|+++...... ... .....+.++|+||+|+.+.
T Consensus 246 ~~~l~DTaG~-~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 246 ETVLADTVGF-IRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred eEEEEecCcc-cccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 6799999993 111 1 1 1235799999999988642111 111 1124578999999999754
Q ss_pred ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 135 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.. .... . ...+ ...++++||++|.|+++|++++.+.+.
T Consensus 325 --~~-~~~~-~-~~~~-~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 325 --FE-PRID-R-DEEN-KPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --hh-HHHH-H-HhcC-CCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11 1111 1 1111 123588999999999999999998775
No 181
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.35 E-value=8.5e-07 Score=67.11 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---CCCC-----CCCceeEEEEecCCCCCcc------
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAI------ 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~-----~~~~adiivlNK~Dl~~~~------ 135 (186)
...+.|++|+|..- . .+..+..+|.+++|+|.++...... .+.. .-..+.++++||+|+.+..
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 126 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQL 126 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHH
Confidence 45678999999411 0 1223456899999999987543211 1111 1135789999999997531
Q ss_pred ------cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHH
Q 029893 136 ------GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 174 (186)
Q Consensus 136 ------~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~ 174 (186)
.-..++.....++. ...+++++||++|.|++++++.+.
T Consensus 127 ~~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 127 ARYGEKPVSQSRAKALAEKI-GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hhcCCCCcCHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 01112233333332 334899999999999999998764
No 182
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.35 E-value=5.6e-07 Score=70.62 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred cCCcEEEEecCCCe-eE-Eee-eeecCceEEEEEeCCCCCCCcc----CCCCCCCce-eEEEEecCCCCCcccccHHHHH
Q 029893 72 FKADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPR----KGGPGITQA-DLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~-~~~-~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~a-diivlNK~Dl~~~~~~~~~~~~ 143 (186)
.+..+.|++|+|.. .. ... ....+|++++|+|++.+..... .+......+ .++|+||+|+.+..........
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHH
Confidence 46678999999931 00 001 1245799999999987643211 111122333 4668999999753111122222
Q ss_pred HH----HHhhC-CCCCEEEEeccCCCCHHHH
Q 029893 144 RD----ALRMR-DGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 144 ~~----l~~~~-p~a~i~~~Sa~~g~gi~~l 169 (186)
.. ++..+ +..+++++||++|.|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 22 33332 3467999999999999753
No 183
>PLN03110 Rab GTPase; Provisional
Probab=98.34 E-value=1.6e-06 Score=68.47 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=67.6
Q ss_pred CCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+-|.+|+|.. .. ....+..++.+++|+|.++..... ..+. ..-..+.++|.||+|+........+.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 139 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEED 139 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHH
Confidence 4677888999921 00 111235679999999997643211 0110 01235789999999997542111222
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
. ..+... ...+++++||++|.|++++++++.+.+...
T Consensus 140 ~-~~l~~~-~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 140 G-QALAEK-EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred H-HHHHHH-cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2 233332 357999999999999999999998777653
No 184
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.34 E-value=1.9e-06 Score=68.99 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCc------
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA------ 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~------ 134 (186)
..+.+-|.+|+|... ..+..+..+|++++|+|.++...... .|... -..+.++|.||+||.+.
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~ 138 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLME 138 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhh
Confidence 467888999999310 02234567899999999987653221 11111 13467999999998642
Q ss_pred ------ccccHHHHHHHHHhhCCCCCEEEEeccCCC-CHHHHHHHHHHHHHH
Q 029893 135 ------IGADLAVMERDALRMRDGGPFIFAQVKHGL-GVEEIVNHILQAWEA 179 (186)
Q Consensus 135 ------~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~-gi~~l~~~i~~~~~~ 179 (186)
.....++..+..++.+ ..+++++||++|+ |++++|..+.+....
T Consensus 139 l~~~~~~~Vs~~e~~~~a~~~~-~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 139 LSNQKQAPISYEQGCALAKQLG-AEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred hccccCCcCCHHHHHHHHHHcC-CCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 1112234444444432 2268999999998 899999988776543
No 185
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.33 E-value=5.6e-07 Score=79.09 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=65.9
Q ss_pred cCCcEEEEecCCCeeEE-----------eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAA-----------NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-----------~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+..+.|++|.|..... ...+..+|++++|+|++.+...... +......+.++|+||+|+....
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~- 162 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE- 162 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc-
Confidence 35678999999942100 0123458999999999886432111 1112356899999999987531
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+. .+.. .. .....+++||++|.|++++++++.+.++.
T Consensus 163 ~~~---~~~~-~~-g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 163 ADA---AALW-SL-GLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred hhh---HHHH-hc-CCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 111 1111 11 22245799999999999999999987754
No 186
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.31 E-value=1.6e-06 Score=66.64 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=67.1
Q ss_pred CCcEEEEecCCCeeE-------Eee------eee---cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDNLA-------ANF------SRE---LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~-------~~~------~~~---~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~ 132 (186)
+.++.|++|+|.... ..+ .+. ..+++++++|+..+..... .+......+.++++||+|+.
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 367999999994211 000 011 2356788889776432211 11122345679999999998
Q ss_pred CcccccHHHHHHHHHhhCC--CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 133 SAIGADLAVMERDALRMRD--GGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~p--~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+. .+.+.....++.... ..+++++||++|.|++++++++.+++++
T Consensus 149 ~~--~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 149 KK--GERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CH--HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 76 444443333333221 4699999999999999999999987764
No 187
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.30 E-value=1.9e-06 Score=64.75 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=61.8
Q ss_pred CcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCcc--C-------CCCCCCceeEEEEecCCCCC--cccccHHHH
Q 029893 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLAS--AIGADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~--~-------~~~~~~~adiivlNK~Dl~~--~~~~~~~~~ 142 (186)
..+-|-+|+|. .....+..+|.+++|+|.++...... . +...-..+.++|.||.|+.. +.....+..
T Consensus 47 ~~l~i~D~~g~--~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~ 124 (158)
T cd04103 47 HLLLIRDEGGA--PDAQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA 124 (158)
T ss_pred EEEEEEECCCC--CchhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence 44666788882 11222345899999999987543211 1 11112247899999999853 211122222
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.+..++. ...+++++||++|.|++++|+.+.+.
T Consensus 125 ~~~~~~~-~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 125 RQLCADM-KRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHh-CCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 2222332 23689999999999999999988753
No 188
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.29 E-value=1.4e-06 Score=68.97 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=66.8
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC-----CCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
....+-|.+|+|..- . ....+..++.+|+|+|.++..... ..+.. .-..+.++|.||+|+.... ...+.
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~~~ 138 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQ 138 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc-CCHHH
Confidence 357888999999311 0 111234678999999998764321 01100 1235889999999996431 11222
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+ ...+. ...+++++||++|.|++++|+++.+.+..
T Consensus 139 ~-~~~~~--~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 139 V-TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred H-HHHHh--cCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 2 22222 23689999999999999999999877654
No 189
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.28 E-value=3.2e-06 Score=63.75 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCe-eE---EeeeeecCceEEEEEeCCCCCCCcc--C-------CCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~-------~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
...+-+++|+|.. .. .+..+..+|.+++|+|+++...... . +...-..|.++|+||+|+........
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 129 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT 129 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH
Confidence 4678899999931 10 1122345799999999987543210 1 11112358899999999976521112
Q ss_pred HHHHHHHHhhCCCCCEEEEeccC---CCCHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKH---GLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~---g~gi~~l~~~i~~~~ 177 (186)
+...+..+.. ..+++++||++ +.|+++++..+.+.+
T Consensus 130 ~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 130 DLAQRFADAH--SMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHc--CCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 2222222222 36899999999 899999999887654
No 190
>PRK12736 elongation factor Tu; Reviewed
Probab=98.27 E-value=1.7e-06 Score=74.41 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=66.1
Q ss_pred cCCcEEEEecCCCe--eEEee-eeecCceEEEEEeCCCCCCCcc-C---CCCCCCce-eEEEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPR-K---GGPGITQA-DLLVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~--l~~~~-~~~~ad~~v~VvDa~~~~~~~~-~---~~~~~~~a-diivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.||+|+|-. +...+ ....+|++++|+|+.++...+. . +......+ -++++||+|++++. ...+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~-~~~~~i~ 151 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE-ELLELVE 151 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH-HHHHHHH
Confidence 35678999999921 00000 1234699999999988643221 1 11223456 46789999998541 1122
Q ss_pred -HHHHHHHhhC---CCCCEEEEeccCCC--------CHHHHHHHHHHHHH
Q 029893 141 -VMERDALRMR---DGGPFIFAQVKHGL--------GVEEIVNHILQAWE 178 (186)
Q Consensus 141 -~~~~~l~~~~---p~a~i~~~Sa~~g~--------gi~~l~~~i~~~~~ 178 (186)
++...++... ...|++++||++|. ++++|++.+.+++|
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 152 MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 3333343332 24799999999983 68888888888766
No 191
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.27 E-value=1.3e-06 Score=76.92 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=61.0
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCC-ceeEEEEecCCCCCcccccHHHHH
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGIT-QADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~-~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
.+..++||+|+|-. .... .....+|++++|+|+..+...+.. ....+. .+.++++||+|+.+.....++.+.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 35688999999921 0000 012357999999999887533211 111122 246789999999854213344444
Q ss_pred HHHHh----h--CCCCCEEEEeccCCCCHHHH
Q 029893 144 RDALR----M--RDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 144 ~~l~~----~--~p~a~i~~~Sa~~g~gi~~l 169 (186)
+.++. . .+..+++++||++|.|++++
T Consensus 185 ~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 185 EDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 44432 1 24689999999999999764
No 192
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=4.6e-06 Score=70.86 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=51.6
Q ss_pred CceEEEEEeCCCCCCC--ccCC---CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 95 ADYIIYIIDVSGGDKI--PRKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~--~~~~---~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
.|.+++|+++...... ...+ ........+||+||+||+++ . +...+.+....+..+++++|+++|.|+++|
T Consensus 113 vD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--~--~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 113 VDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--A--EEKIAEVEALAPGVPVLAVSALDGEGLDVL 188 (356)
T ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--H--HHHHHHHHHhCCCCcEEEEECCCCccHHHH
Confidence 4778888888532221 1112 11233466999999999865 2 223344555566789999999999999999
Q ss_pred HHHHH
Q 029893 170 VNHIL 174 (186)
Q Consensus 170 ~~~i~ 174 (186)
.+++.
T Consensus 189 ~~~L~ 193 (356)
T PRK01889 189 AAWLS 193 (356)
T ss_pred HHHhh
Confidence 99875
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.26 E-value=2.6e-06 Score=78.87 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=70.0
Q ss_pred hcCCcEEEEecCCCe-eE---Eeee-----------eecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCC
Q 029893 71 LFKADLLLCESGGDN-LA---ANFS-----------RELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~---~~~~-----------~~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~ 133 (186)
..+.++.+++|+|.. +. .+.+ ...+|+++.|+|+++.+.... ........+.++++||+|+.+
T Consensus 47 ~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (772)
T ss_pred cCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhh
Confidence 346789999999942 11 1110 124699999999988653211 111234678999999999975
Q ss_pred cccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 134 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
. .....-.+.+++.. ..|++++||++|+|++++.+.+.+..+
T Consensus 127 ~--~~i~id~~~L~~~L-G~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 127 K--QNIRIDIDALSARL-GCPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred c--cCcHHHHHHHHHHh-CCCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 5 22222233444433 369999999999999999999987653
No 194
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.26 E-value=4.3e-08 Score=73.85 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=60.1
Q ss_pred cCCcEEEEecCCC-eeEEe---------e-eeecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCccccc
Q 029893 72 FKADLLLCESGGD-NLAAN---------F-SRELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~-~l~~~---------~-~~~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
.+..+.||+++|+ .+... + ..+..|++++|+|+++.+.... .....+..|.++++||+|++......
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEE
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCE
Confidence 4578999999994 22110 1 0123699999999988532111 11123567999999999998763222
Q ss_pred --HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHH
Q 029893 139 --LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 173 (186)
Q Consensus 139 --~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i 173 (186)
.+.+.+.+ ..|++++||++|+|+++|++.|
T Consensus 125 id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 125 IDAEKLSERL-----GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp E-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHhhC
Confidence 23333322 4699999999999999999875
No 195
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.25 E-value=1.6e-06 Score=74.93 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=58.9
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCc-eeEEEEecCCCCCcccccHHHHH
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~-adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
.+..+.||+|+|.. ... ......+|++++|+|+..+...+.. ....+.. ..++++||+|+.+.....++.+.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHH
Confidence 35578999999921 000 0112357999999999887543221 1112223 35779999999864212233333
Q ss_pred HHHH----hhC-CCCCEEEEeccCCCCHHH
Q 029893 144 RDAL----RMR-DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 144 ~~l~----~~~-p~a~i~~~Sa~~g~gi~~ 168 (186)
+.++ ... ...+++++||++|.|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 3332 222 246899999999999985
No 196
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.25 E-value=2.1e-06 Score=70.67 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=67.1
Q ss_pred hhcCCcEEEEecCCCeeEEe-----------------eeeecCceEEEEEeCCCCCC--Ccc---CCCCCCCceeEEEEe
Q 029893 70 NLFKADLLLCESGGDNLAAN-----------------FSRELADYIIYIIDVSGGDK--IPR---KGGPGITQADLLVIN 127 (186)
Q Consensus 70 ~~~~~D~iiIEtsG~~l~~~-----------------~~~~~ad~~v~VvDa~~~~~--~~~---~~~~~~~~adiivlN 127 (186)
.......||.+|.|+ ..+ -+...||++++|+|++.... .+. ....-...+-++|+|
T Consensus 116 ts~eTQlvf~DTPGl--vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmn 193 (379)
T KOG1423|consen 116 TSGETQLVFYDTPGL--VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMN 193 (379)
T ss_pred ecCceEEEEecCCcc--cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeecc
Confidence 356789999999994 211 01235799999999985211 110 001112347899999
Q ss_pred cCCCCCccc-----------ccHHHHHHHHHhhCCC----------------CCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 128 KTDLASAIG-----------ADLAVMERDALRMRDG----------------GPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 128 K~Dl~~~~~-----------~~~~~~~~~l~~~~p~----------------a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
|+|...+.. .++....-.+++.+.. ..+|++||++|+|++++.+|+....+
T Consensus 194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 999865421 1222222233333323 34999999999999999999986554
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.25 E-value=2.4e-06 Score=74.06 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=57.9
Q ss_pred cCCcEEEEecCCCe-eEEee--eeecCceEEEEEeCCC--CCCCccC----CCCCCCc-eeEEEEecCCCCCcccccHH-
Q 029893 72 FKADLLLCESGGDN-LAANF--SRELADYIIYIIDVSG--GDKIPRK----GGPGITQ-ADLLVINKTDLASAIGADLA- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~--~~~~~~~----~~~~~~~-adiivlNK~Dl~~~~~~~~~- 140 (186)
.+..+.|++|+|.. ..... ....+|++++|+|+.+ +...+.. +...+.. +-++++||+|+.+......+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence 46789999999931 10111 1235799999999987 4322110 1111232 46889999999863112222
Q ss_pred ---HHHHHHHhhC---CCCCEEEEeccCCCCHHH
Q 029893 141 ---VMERDALRMR---DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 141 ---~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~ 168 (186)
++.+.++... ...+++++||++|.|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 2333333222 136899999999999986
No 198
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.24 E-value=3.1e-06 Score=61.88 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++++|..--. ...+..+|.+++|+|++....... ........+.++|+||+|+.+. ....
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~ 120 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVD 120 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHH
Confidence 4667888999931000 112345789999999986432110 0111124578999999998765 3444
Q ss_pred HHHHHHH--hh-CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDAL--RM-RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~--~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.....+. .. ....+++++|+++|.|++++++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 3333332 11 12357899999999999999999875
No 199
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.23 E-value=1.9e-06 Score=74.55 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=69.4
Q ss_pred cCCcEEEEecCCCeeEE-----e------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAA-----N------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-----~------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+..+.+++|.|..... . .....+|++++|+|+..+..... .+......+.++|+||+|+.+.
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~-- 122 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE-- 122 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc--
Confidence 45679999999942110 0 01235799999999987643221 1222345688999999999865
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
... . ....+. ...+++++||++|.|++++++++.+.++..
T Consensus 123 ~~~--~-~~~~~l-g~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 123 DAV--A-AEFYSL-GFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred ccc--H-HHHHhc-CCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 221 1 112222 345899999999999999999999887653
No 200
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.22 E-value=3.9e-06 Score=64.12 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=68.9
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+.|-.|-.-..+ ..+..+|.+|+|+|+++...... .....-..|.+|++||.|+.+. ...
T Consensus 56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~ 133 (175)
T PF00025_consen 56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSE 133 (175)
T ss_dssp TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STH
T ss_pred CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chh
Confidence 466788888888321111 12345799999999987543111 1111224689999999999876 445
Q ss_pred HHHHHHH--HhhC--CCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 140 AVMERDA--LRMR--DGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 140 ~~~~~~l--~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+++...+ ..+. ....++.+||++|+|+.+.++||.+.
T Consensus 134 ~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 134 EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 5555544 2332 34579999999999999999999864
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.21 E-value=2.5e-06 Score=74.03 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=58.2
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCC---Ccc-C---CCCCCC-ceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDK---IPR-K---GGPGIT-QADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~---~~~-~---~~~~~~-~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+..+.|++|+|-. .... .....+|++++|+|++++.. .+. . ....+. .+-++++||+|+.+......+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 36788999999921 0000 11235799999999988731 111 0 111122 246789999999853112222
Q ss_pred H----HHHHHHhhC---CCCCEEEEeccCCCCHHH
Q 029893 141 V----MERDALRMR---DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 141 ~----~~~~l~~~~---p~a~i~~~Sa~~g~gi~~ 168 (186)
. +.+.++... ...+++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 2 333333322 246899999999999986
No 202
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.21 E-value=3.3e-06 Score=62.19 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=46.6
Q ss_pred ecCceEEEEEeCCCCCCCcc----CCCCCC--CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCC
Q 029893 93 ELADYIIYIIDVSGGDKIPR----KGGPGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 165 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~----~~~~~~--~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g 165 (186)
..+|++++|+|+..+..... .+.... ..+.++|+||+|+.++ .......+.+++.. .+++++||++|.+
T Consensus 10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~~~~~~~~~~~~~--~~ii~iSa~~~~~ 84 (141)
T cd01857 10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQRKAWAEYFKKEG--IVVVFFSALKENA 84 (141)
T ss_pred hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HHHHHHHHHHHhcC--CeEEEEEecCCCc
Confidence 35799999999987643221 111122 5689999999999866 44445555555443 5899999988754
No 203
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.20 E-value=3.5e-06 Score=71.67 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=54.1
Q ss_pred ecCceEEEEEeCCCCCCCccC-CCCCC-CceeEEEEecCCCCCcccccHHHHHHHH----HhhC-CCCCEEEEeccCCCC
Q 029893 93 ELADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDA----LRMR-DGGPFIFAQVKHGLG 165 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~-~~~~~-~~adiivlNK~Dl~~~~~~~~~~~~~~l----~~~~-p~a~i~~~Sa~~g~g 165 (186)
..++++++|+|+.+.+..... ....+ ..+.++|+||+||.+.. ...+.+.+++ ++.+ +...++.+||++|.|
T Consensus 62 ~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g 140 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNG 140 (360)
T ss_pred cCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC
Confidence 356899999998765422111 10111 35789999999998652 2233344333 3222 113699999999999
Q ss_pred HHHHHHHHHHHH
Q 029893 166 VEEIVNHILQAW 177 (186)
Q Consensus 166 i~~l~~~i~~~~ 177 (186)
++++++.+.++.
T Consensus 141 v~eL~~~l~~~~ 152 (360)
T TIGR03597 141 IDELLDKIKKAR 152 (360)
T ss_pred HHHHHHHHHHHh
Confidence 999999997763
No 204
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.20 E-value=6.7e-06 Score=60.51 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=66.3
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.+++++|...- ....+..+|.+++|+|..+.+.... .....-..+.++++||+|+........+
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 125 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKE 125 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHH
Confidence 456778999993110 0112345789999999877532110 0111124688999999999864222334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
......+... .+++++|+++|.|++++++++.+.
T Consensus 126 ~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 126 EGKALAKEWG--CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHhh
Confidence 4444444433 689999999999999999998764
No 205
>PRK00098 GTPase RsgA; Reviewed
Probab=98.19 E-value=5e-06 Score=68.97 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=51.3
Q ss_pred cCceEEEEEeCCCCCCCc---cCC---CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 94 LADYIIYIIDVSGGDKIP---RKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~---~~~---~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
.+|.+++|+|+.+++... ..+ ......+.++|+||+||.+.. .......+..+.. ..+++++||++|.|++
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~~--g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDL-EEARELLALYRAI--GYDVLELSAKEGEGLD 156 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCH-HHHHHHHHHHHHC--CCeEEEEeCCCCccHH
Confidence 468899999997653211 111 112345789999999997441 2223333333333 3589999999999999
Q ss_pred HHHHHHH
Q 029893 168 EIVNHIL 174 (186)
Q Consensus 168 ~l~~~i~ 174 (186)
+|++.+.
T Consensus 157 ~L~~~l~ 163 (298)
T PRK00098 157 ELKPLLA 163 (298)
T ss_pred HHHhhcc
Confidence 9998764
No 206
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.19 E-value=2.1e-06 Score=66.19 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=66.5
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCc------
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASA------ 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~------ 134 (186)
..+.+-|.+|+|-.- ..+..+..+|.+++|+|.++..... ..+... -..+.++|.||+||.+.
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~ 130 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVE 130 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHH
Confidence 356788899999310 1223455689999999998764321 111111 13578999999998642
Q ss_pred ------ccccHHHHHHHHHhhCCCCCEEEEeccCCCC-HHHHHHHHHHH
Q 029893 135 ------IGADLAVMERDALRMRDGGPFIFAQVKHGLG-VEEIVNHILQA 176 (186)
Q Consensus 135 ------~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g-i~~l~~~i~~~ 176 (186)
..-..++..+..++. ...+++++||++|.| ++++|..+.+.
T Consensus 131 ~~~~~~~~v~~~~~~~~a~~~-~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 131 LSNHRQTPVSYDQGANMAKQI-GAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHhcCCCCCCHHHHHHHHHHc-CCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 001223333333443 234899999999998 99999987764
No 207
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.19 E-value=4.6e-06 Score=64.07 Aligned_cols=107 Identities=19% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCC-----CCCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~-----~~~~adiivlNK~Dl~~~~~----- 136 (186)
..++.+.||.|... ..+..+..+|.+++++|....+... ..+.. .-..+.++|.||+|+.+...
T Consensus 48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~ 127 (187)
T cd04129 48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEY 127 (187)
T ss_pred EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccccc
Confidence 45678889999311 1122334578899999987643211 01111 11357899999999864210
Q ss_pred -----ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 -----ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 -----~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
...+......++ ....+++++||++|.|++++++++.+..-..
T Consensus 128 ~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 128 RTQRFVPIQQGKRVAKE-IGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred ccCCcCCHHHHHHHHHH-hCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 111222222233 2334799999999999999999998765433
No 208
>PRK00049 elongation factor Tu; Reviewed
Probab=98.18 E-value=3.4e-06 Score=72.62 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=65.3
Q ss_pred cCCcEEEEecCCCe--eEEe-eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeE-EEEecCCCCCcccccHHH--
Q 029893 72 FKADLLLCESGGDN--LAAN-FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADL-LVINKTDLASAIGADLAV-- 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~--l~~~-~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adi-ivlNK~Dl~~~~~~~~~~-- 141 (186)
.+..++||+|+|.. +... .....+|++++|+|+..+...+. .+......+.+ +++||+|+++.. ...+.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~-~~~~~~~ 151 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE-ELLELVE 151 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH-HHHHHHH
Confidence 35678999999931 0000 11235799999999988643321 11122345665 579999998541 22222
Q ss_pred --HHHHHHhhC---CCCCEEEEeccCCC----------CHHHHHHHHHHHHH
Q 029893 142 --MERDALRMR---DGGPFIFAQVKHGL----------GVEEIVNHILQAWE 178 (186)
Q Consensus 142 --~~~~l~~~~---p~a~i~~~Sa~~g~----------gi~~l~~~i~~~~~ 178 (186)
+...++... ..+|++++||++|. |+..|++.|....+
T Consensus 152 ~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 333333321 24799999999875 57788888877654
No 209
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.18 E-value=5.8e-06 Score=61.01 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=64.1
Q ss_pred cEEEEecCCCeeE-Ee------e--------e-eecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCc
Q 029893 75 DLLLCESGGDNLA-AN------F--------S-RELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 75 D~iiIEtsG~~l~-~~------~--------~-~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+.+++|.|.... .+ + . .+..+.+++++|......... .+......+.++++||+|+.+.
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK 125 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 8899999994211 00 0 0 012356788999876532111 1222345678999999999765
Q ss_pred ccccHHHHHHH----HHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 135 IGADLAVMERD----ALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 135 ~~~~~~~~~~~----l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.+....... ++...+..+++++||+++.|++++++++.++
T Consensus 126 --~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 126 --SELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --HHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 333333222 2223456799999999999999999999875
No 210
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.18 E-value=3.1e-06 Score=64.83 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=65.9
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCc------
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA------ 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~------ 134 (186)
..+.+-|.+|+|..- ..+..+..+|.+++|+|.++...... .+... -..+.++|.||+||.++
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~ 126 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLME 126 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHH
Confidence 356788999999310 12334456899999999987643211 11110 13478999999999642
Q ss_pred ------ccccHHHHHHHHHhhCCCCCEEEEeccCCCC-HHHHHHHHHHH
Q 029893 135 ------IGADLAVMERDALRMRDGGPFIFAQVKHGLG-VEEIVNHILQA 176 (186)
Q Consensus 135 ------~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g-i~~l~~~i~~~ 176 (186)
..-..++..+..++. ...+++++||++|+| ++++|..+.+.
T Consensus 127 ~~~~~~~~v~~~e~~~~a~~~-~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 127 LSHQRQAPVSYEQGCAIAKQL-GAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhcCCCCCCHHHHHHHHHHh-CCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 001123333333333 223789999999995 99999988773
No 211
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.17 E-value=3.3e-06 Score=76.77 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=59.4
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc----CCCCCCC-ceeEEEEecCCCCCcccccHHHHH
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGIT-QADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~-~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
.+..++||+|+|.. .... .....+|++++|+|+..+...+. .....+. .+.++++||+|+++...+.++.+.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 45678999999931 0000 11235799999999987753221 1111223 346789999999853113334444
Q ss_pred HHHH----hh-CCCCCEEEEeccCCCCHHH
Q 029893 144 RDAL----RM-RDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 144 ~~l~----~~-~p~a~i~~~Sa~~g~gi~~ 168 (186)
..++ +. ++..+++++||++|.|+++
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 4443 22 2346899999999999974
No 212
>PRK10218 GTP-binding protein; Provisional
Probab=98.17 E-value=2.3e-06 Score=77.29 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred cCCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc-ccHHHHH
Q 029893 72 FKADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG-ADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~-~~~~~~~ 143 (186)
.+..+.|++|+|..- .. ...+..+|.+++|+|+.++...+. ........+.++++||+|+..... ..++++.
T Consensus 66 ~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~ 145 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVF 145 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHH
Confidence 467889999999210 00 012345799999999988743221 111224557899999999875421 1223333
Q ss_pred HHHHhhC-----CCCCEEEEeccCCC----------CHHHHHHHHHHHHHHh
Q 029893 144 RDALRMR-----DGGPFIFAQVKHGL----------GVEEIVNHILQAWEAS 180 (186)
Q Consensus 144 ~~l~~~~-----p~a~i~~~Sa~~g~----------gi~~l~~~i~~~~~~~ 180 (186)
+.+..+. -..|++++||++|. |+..|++.+..++|.-
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 3332211 13689999999998 6899999998888743
No 213
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.17 E-value=3.4e-06 Score=77.68 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCeeEE-----e------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccc
Q 029893 73 KADLLLCESGGDNLAA-----N------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~-----~------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~ 137 (186)
+..+.+++|.|..... . ..+..+|++++|+|+.++..... .+......+.++|+||+|+... .
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~--~ 399 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS--E 399 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc--h
Confidence 5678899999932100 0 01245799999999987543221 1112245689999999998754 2
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.. .....+ . ....++++||++|.|++++++++.+.++.
T Consensus 400 ~~--~~~~~~-l-g~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 400 YD--AAEFWK-L-GLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred hh--HHHHHH-c-CCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 11 111111 1 22356899999999999999999987764
No 214
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=7.5e-06 Score=63.84 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=62.0
Q ss_pred eeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc
Q 029893 91 SRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK 161 (186)
Q Consensus 91 ~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~ 161 (186)
.++.|+.+++|+|.++..... .++.. -..+-++|.||+|+.+++.-..++.++..++. +.+.+++|||
T Consensus 81 YyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~--G~~F~EtSAk 157 (207)
T KOG0078|consen 81 YYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAREY--GIKFFETSAK 157 (207)
T ss_pred HHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHHHh--CCeEEEcccc
Confidence 356789999999998743211 11111 13467999999999886433444554444554 6899999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 029893 162 HGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 162 ~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+|.||++.|-.+.+.......
T Consensus 158 ~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhcc
Confidence 999999999988876654333
No 215
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.16 E-value=2e-06 Score=65.69 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=57.3
Q ss_pred cEEEEecCCCeeEEe-------e------eee---cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCc
Q 029893 75 DLLLCESGGDNLAAN-------F------SRE---LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 75 D~iiIEtsG~~l~~~-------~------~~~---~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+.|++|+|...... + .+. ..+.+++|+|+.++..... ........+.++++||+|+.++
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 689999999421100 0 011 2478899999987533211 1112245688999999999865
Q ss_pred ccccH----HHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 135 IGADL----AVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 135 ~~~~~----~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
.+. +++++.++...+..+++++||++|+|++
T Consensus 145 --~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 145 --SELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --HHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 333 3344444443334689999999999974
No 216
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.15 E-value=3.1e-06 Score=69.95 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=53.1
Q ss_pred cCceEEEEEeCCCCCCC---c---------cCCCC-CCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEec
Q 029893 94 LADYIIYIIDVSGGDKI---P---------RKGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 160 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~---~---------~~~~~-~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa 160 (186)
.++..++|+|.+.+... . ..|.. ....+.+||.||+|+.+. +.. ..+.+.+..+...|+++||
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~-~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKN-LLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHH-HHHHHHHHcCCCcEEEeee
Confidence 35678999999887221 0 11222 245689999999999643 222 2233333333447999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 029893 161 KHGLGVEEIVNHILQA 176 (186)
Q Consensus 161 ~~g~gi~~l~~~i~~~ 176 (186)
++|+|++++++.+.+.
T Consensus 350 ~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 350 KSGEGLEELLNGLREL 365 (366)
T ss_pred ccccchHHHHHHHhhc
Confidence 9999999999988764
No 217
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.15 E-value=4.7e-06 Score=62.77 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=63.9
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc------cCCC-CCCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP------RKGG-PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~------~~~~-~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+..+.+.+++|..--. +..+..+|.+++|+|+++..... .... ..-..+.++|+||+|+... .....
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~ 119 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQE 119 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHH
Confidence 46778899999931101 11245689999999998753211 0110 1124578999999999765 33443
Q ss_pred HHHHH--HhhC--CCCCEEEEeccC------CCCHHHHHHHHH
Q 029893 142 MERDA--LRMR--DGGPFIFAQVKH------GLGVEEIVNHIL 174 (186)
Q Consensus 142 ~~~~l--~~~~--p~a~i~~~Sa~~------g~gi~~l~~~i~ 174 (186)
+...+ ..+. ...+++++||++ ++|++++|+.+.
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 120 IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 33322 2221 235789999999 999999998764
No 218
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.13 E-value=2.9e-06 Score=76.48 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=69.4
Q ss_pred cCCcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccc-cHH
Q 029893 72 FKADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA-DLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~-~~~ 140 (186)
.+..+-||+|+|- . .| ....+|.+++|+|+.++...+.. .......+.++++||+|+.+.... ..+
T Consensus 62 ~~~kinlIDTPGh--~-DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ 138 (594)
T TIGR01394 62 NGTKINIVDTPGH--A-DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVD 138 (594)
T ss_pred CCEEEEEEECCCH--H-HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHH
Confidence 4677889999992 1 12 12357999999999887532211 112244578999999999754211 123
Q ss_pred HHHHHHHhhC-----CCCCEEEEeccCCC----------CHHHHHHHHHHHHHHh
Q 029893 141 VMERDALRMR-----DGGPFIFAQVKHGL----------GVEEIVNHILQAWEAS 180 (186)
Q Consensus 141 ~~~~~l~~~~-----p~a~i~~~Sa~~g~----------gi~~l~~~i~~~~~~~ 180 (186)
++...+.... ...|++++||++|. |++.|++.+.+++|.-
T Consensus 139 ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 139 EVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 3333333221 13589999999996 8999999999888753
No 219
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.13 E-value=4.9e-06 Score=72.15 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=64.6
Q ss_pred cCCcEEEEecCCCeeEEe-----------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAAN-----------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-----------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+.++.+++|.|..-... ..+..+|++++|+|+.++..... .+......+.++|+||+|+.+..
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~- 125 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE- 125 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch-
Confidence 457899999999421100 01235799999999987643221 11122356899999999976431
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
... . ..... ...+++++||++|.|++++++++.+.
T Consensus 126 ~~~---~-~~~~l-g~~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 126 ADA---Y-EFYSL-GLGEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred hhH---H-HHHhc-CCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence 111 1 12222 23457999999999999999998773
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.09 E-value=1.4e-06 Score=68.54 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc-----ccccHH
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA-----IGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~-----~~~~~~ 140 (186)
.+.+.|++|+|.. .... .....+|.+++|+|+.++...... .......+.++|+||+|++.. ..+..+
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~ 149 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYF 149 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHH
Confidence 4678999999931 1000 112357999999999876543211 111123689999999998621 002334
Q ss_pred HHHHHHHhhCCC------------CC----EEEEeccCCCCHH--------HHHHHHHHHH
Q 029893 141 VMERDALRMRDG------------GP----FIFAQVKHGLGVE--------EIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~------------a~----i~~~Sa~~g~gi~--------~l~~~i~~~~ 177 (186)
.+.+.++++|+. .| |++.|++.|.++. +|++.|....
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 444444444321 33 7889999998886 6666655544
No 221
>CHL00071 tufA elongation factor Tu
Probab=98.09 E-value=2.6e-06 Score=73.64 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=56.2
Q ss_pred cCCcEEEEecCCCe--eEEe-eeeecCceEEEEEeCCCCCCCcc----CCCCCCCce-eEEEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN--LAAN-FSRELADYIIYIIDVSGGDKIPR----KGGPGITQA-DLLVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~--l~~~-~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~a-diivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.||+|+|.. +... .....+|++++|+|+..+...+. ........+ .++++||+|+++.. ...+
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~-~~~~~~~ 151 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE-ELLELVE 151 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH-HHHHHHH
Confidence 35678999999931 0000 01234799999999988653221 111224456 56789999998751 1122
Q ss_pred -HHHHHHHhhC-C--CCCEEEEeccCCCC
Q 029893 141 -VMERDALRMR-D--GGPFIFAQVKHGLG 165 (186)
Q Consensus 141 -~~~~~l~~~~-p--~a~i~~~Sa~~g~g 165 (186)
++...++... + ..|++++||++|.+
T Consensus 152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 152 LEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 3334444332 1 37999999999863
No 222
>PLN03127 Elongation factor Tu; Provisional
Probab=98.09 E-value=5.4e-06 Score=72.45 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=63.7
Q ss_pred cCCcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCcc----CCCCCCCcee-EEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPR----KGGPGITQAD-LLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~ad-iivlNK~Dl~~~~~~~~~ 140 (186)
.+..++||+|+|.. .| ....+|++++|+|+.++...+. ........+. ++++||+|++++. ...+
T Consensus 122 ~~~~i~~iDtPGh~---~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~-~~~~ 197 (447)
T PLN03127 122 AKRHYAHVDCPGHA---DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE-ELLE 197 (447)
T ss_pred CCeEEEEEECCCcc---chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH-HHHH
Confidence 35578999999931 11 1124799999999987643221 1122244564 6789999998641 2222
Q ss_pred HHHHHHHhh-----C--CCCCEEEEecc---CCCC-------HHHHHHHHHHHHH
Q 029893 141 VMERDALRM-----R--DGGPFIFAQVK---HGLG-------VEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~-----~--p~a~i~~~Sa~---~g~g-------i~~l~~~i~~~~~ 178 (186)
.+...+++. + ...|++++||. +|.| +.+|++++.+++|
T Consensus 198 ~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 198 LVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 233233322 1 13688888876 5555 7888998888765
No 223
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.09 E-value=1.3e-05 Score=66.85 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=62.2
Q ss_pred CceEEEEEeCCCCCCCc------------cCC-CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc
Q 029893 95 ADYIIYIIDVSGGDKIP------------RKG-GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK 161 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~~------------~~~-~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~ 161 (186)
..+.+.|+|.+..+... ..| +....++.+||+||+|+..+. ++++.+.+.+.+...+...+++||.
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~ISa~ 316 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLISAL 316 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceeeehh
Confidence 45679999998754310 123 233577999999999955432 5667777777765554444449999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 029893 162 HGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 162 ~g~gi~~l~~~i~~~~~~~~ 181 (186)
+++|+++|+..+.+.++..+
T Consensus 317 t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 317 TREGLDELLRALAELLEETK 336 (369)
T ss_pred cccCHHHHHHHHHHHHHHhh
Confidence 99999999999999888775
No 224
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.4e-05 Score=61.73 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=61.7
Q ss_pred eeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc
Q 029893 91 SRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK 161 (186)
Q Consensus 91 ~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~ 161 (186)
.++.|+.+|+|+|.+.-.... .++.. -..+.++|.||+|+.+......++.+ .....++-.+.++||||
T Consensus 78 yYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~-~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 78 YYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQ-EFADELGIPIFLETSAK 155 (205)
T ss_pred hccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHH-HHHHhcCCcceeecccC
Confidence 356799999999998743321 11111 12478999999999877422223333 33333443349999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc
Q 029893 162 HGLGVEEIVNHILQAWEASTGK 183 (186)
Q Consensus 162 ~g~gi~~l~~~i~~~~~~~~~~ 183 (186)
++.++++.|..+...+...+..
T Consensus 156 ~~~NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred CccCHHHHHHHHHHHHHHhccc
Confidence 9999999999999887766543
No 225
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.07 E-value=6.2e-06 Score=68.04 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=51.8
Q ss_pred cCceEEEEEeCCCCC-CC--ccCCC---CCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 94 LADYIIYIIDVSGGD-KI--PRKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~-~~--~~~~~---~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
.+|.+++|+|+.++. .. ...+. .....+.++|+||+||.++ .+......... ....+++++||++|.|++
T Consensus 78 nvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~--~~~~~~~~~~~--~~g~~v~~vSA~~g~gi~ 153 (287)
T cd01854 78 NVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD--EEEELELVEAL--ALGYPVLAVSAKTGEGLD 153 (287)
T ss_pred eCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh--HHHHHHHHHHH--hCCCeEEEEECCCCccHH
Confidence 468899999998764 21 11121 1234578999999999865 22222122222 245699999999999999
Q ss_pred HHHHHHHH
Q 029893 168 EIVNHILQ 175 (186)
Q Consensus 168 ~l~~~i~~ 175 (186)
+|..++..
T Consensus 154 ~L~~~L~~ 161 (287)
T cd01854 154 ELREYLKG 161 (287)
T ss_pred HHHhhhcc
Confidence 99988753
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=98.06 E-value=7.2e-06 Score=70.60 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=65.2
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc-CC---CCCCCceeE-EEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR-KG---GPGITQADL-LVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~-~~---~~~~~~adi-ivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.|++|+|.. .... .....+|++++|+|+..+...+. .+ ......+.+ +++||+|+.+.. ...+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~-~~~~~~~ 151 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE-ELLELVE 151 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH-HHHHHHH
Confidence 35578999999931 0000 11234699999999988643221 11 112344656 479999998541 1222
Q ss_pred -HHHHHHHhhC-C--CCCEEEEeccCC----------CCHHHHHHHHHHHHH
Q 029893 141 -VMERDALRMR-D--GGPFIFAQVKHG----------LGVEEIVNHILQAWE 178 (186)
Q Consensus 141 -~~~~~l~~~~-p--~a~i~~~Sa~~g----------~gi~~l~~~i~~~~~ 178 (186)
++...++... + ..+++++||++| .|+.+|++.+...+|
T Consensus 152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 2333333322 2 378999999998 478899998887764
No 227
>PLN03108 Rab family protein; Provisional
Probab=98.06 E-value=1.8e-05 Score=62.16 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=65.1
Q ss_pred CcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHHH
Q 029893 74 ADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
..+-+.+|+|.. .. .+..+..+|.+++|+|++....... .+. ..-..+.++|.||+|+.+......+..
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 134 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG 134 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHH
Confidence 456688999921 00 1112345789999999987532110 110 012357899999999976422233444
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+..+.. ..+++++||++|.|++++|+++.+.+-
T Consensus 135 ~~~~~~~--~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 135 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred HHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4444443 358999999999999999988876543
No 228
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=9.1e-06 Score=69.74 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=72.9
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCcee-EEEEecCCCCCcccccHHHHHH
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQAD-LLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~ad-iivlNK~Dl~~~~~~~~~~~~~ 144 (186)
+.-.-|||++|-. ...+ ......|+.++|||+.+|...+.. ....+.... ++|+||+|++++ +.+++..+
T Consensus 49 d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~ 126 (447)
T COG3276 49 DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIK 126 (447)
T ss_pred CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHH
Confidence 3467789999921 0001 112246889999999888665431 122344554 999999999987 66666655
Q ss_pred HHHhh--CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 145 DALRM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 145 ~l~~~--~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.+. .+.++++.+|+++|+||++|.++|.+...
T Consensus 127 ~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 127 QILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 55432 46789999999999999999999998873
No 229
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.05 E-value=7.5e-06 Score=59.72 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=64.4
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...++.++++.|...- ....+..+|.+++|+|+.+..... ..+. ..-..+-++++||+|+..+.....+
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 126 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE 126 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH
Confidence 3577889999993110 011223479999999998743211 0010 1123578999999999733112334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 174 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~ 174 (186)
...+..+. ...+++++||++|.|++++++++.
T Consensus 127 ~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 127 EAQQFAKE--NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHH--cCCeEEEEecCCCCCHHHHHHHHh
Confidence 44444443 246899999999999999999875
No 230
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.3e-05 Score=70.45 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=68.0
Q ss_pred cCCcEEEEecCCCeeEEeee---ee---cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNLAANFS---RE---LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~---~~---~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+--+.|.+|+| -+ .|+ .+ .+|++|+||.+.+|-..+. ++......+.++.+||+|..+. ..++
T Consensus 199 ~G~~iTFLDTPG--Ha-AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pek 272 (683)
T KOG1145|consen 199 SGKSITFLDTPG--HA-AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEK 272 (683)
T ss_pred CCCEEEEecCCc--HH-HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHH
Confidence 345677888888 21 121 12 3599999999988765432 2334455689999999997754 4445
Q ss_pred HHHHH-------HhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 142 MERDA-------LRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 142 ~~~~l-------~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+...+ ..+....+++++||++|+|++.|.+.+.-
T Consensus 273 v~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 273 VKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred HHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 54443 33456789999999999999999987754
No 231
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.03 E-value=7e-06 Score=71.73 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=58.2
Q ss_pred cCCcEEEEecCCCe-e-EEe-eeeecCceEEEEEeCCCCCC-------Ccc-C---CCCCCCcee-EEEEecCCC--CCc
Q 029893 72 FKADLLLCESGGDN-L-AAN-FSRELADYIIYIIDVSGGDK-------IPR-K---GGPGITQAD-LLVINKTDL--ASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l-~~~-~~~~~ad~~v~VvDa~~~~~-------~~~-~---~~~~~~~ad-iivlNK~Dl--~~~ 134 (186)
.+..+.||+|+|-. . ... .....+|++++|+|+..|.. .+. . ....+..+. ++++||+|. ++.
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 36678899999921 0 000 01235799999999988741 111 1 112245554 589999994 322
Q ss_pred ccccHHHHHHHHHhh------CC-CCCEEEEeccCCCCHHH
Q 029893 135 IGADLAVMERDALRM------RD-GGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~------~p-~a~i~~~Sa~~g~gi~~ 168 (186)
.....+++.+.++.. ++ ..|++++||.+|.|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 113344444444432 22 47899999999999964
No 232
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.02 E-value=2e-05 Score=71.04 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=61.1
Q ss_pred cEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccc----------
Q 029893 75 DLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA---------- 137 (186)
Q Consensus 75 D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~---------- 137 (186)
.+.|++|+|..--.. .....+|.+++|+|++++...+. .+......+-++++||+|+.+....
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 478999999310000 11234799999999988643221 1111235678999999998632100
Q ss_pred -----c-HH-------HHHHHHHh-------------hCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 138 -----D-LA-------VMERDALR-------------MRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 138 -----~-~~-------~~~~~l~~-------------~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
. .+ ++...+.+ +....+++++||++|+|+++|++.+..
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 00 11112221 123578999999999999999988754
No 233
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.01 E-value=1.6e-05 Score=63.21 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=65.1
Q ss_pred cCCcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCc---cCCCC-----CCCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~-----~~~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+-|.+|+|.. . ..+..+..+|++++|+|.++.+... ..+.. .-..+.++|.||+||.++..
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~ 126 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRE 126 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhh
Confidence 45778889999931 0 1233456789999999998864321 11111 12357899999999965310
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCC-HHHHHHHHHHH
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLG-VEEIVNHILQA 176 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g-i~~l~~~i~~~ 176 (186)
-..++... +.+.....+++++||+++.+ ++++|+.....
T Consensus 127 ~~~~~~~pIs~e~g~~-~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 127 LSKQRLIPVTHEQGTV-LAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hhhccCCccCHHHHHH-HHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 01112222 22223334899999999984 99999977663
No 234
>PRK12288 GTPase RsgA; Reviewed
Probab=97.97 E-value=2.7e-05 Score=65.98 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCCCCC--ccCC---CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhh-CCCCCEEEEeccCCCCHHH
Q 029893 95 ADYIIYIIDVSGGDKI--PRKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~--~~~~---~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~ 168 (186)
+|.+++|.+....... ...| ......+.++|+||+||.++ .+.....+.++.. ....+++++||++|.|+++
T Consensus 121 vD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~--~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gide 198 (347)
T PRK12288 121 IDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDD--EGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEE 198 (347)
T ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc--HHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHH
Confidence 4777777775432221 1112 12234578999999999875 3222222222221 1246999999999999999
Q ss_pred HHHHHHH
Q 029893 169 IVNHILQ 175 (186)
Q Consensus 169 l~~~i~~ 175 (186)
|++++..
T Consensus 199 L~~~L~~ 205 (347)
T PRK12288 199 LEAALTG 205 (347)
T ss_pred HHHHHhh
Confidence 9998864
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.96 E-value=1e-05 Score=69.54 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=54.1
Q ss_pred cCCcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeE-EEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPR----KGGPGITQADL-LVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adi-ivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.|++|+|.. ....+ ....+|.+++|+|+.++...+. .+......+.+ +++||+|++++. ...+
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~-~~~~~~~ 151 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE-ELLELVE 151 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH-HHHHHHH
Confidence 35568899999931 00000 1124699999999988643221 11112344655 579999998651 1122
Q ss_pred -HHHHHHHhhC-C--CCCEEEEeccCCC
Q 029893 141 -VMERDALRMR-D--GGPFIFAQVKHGL 164 (186)
Q Consensus 141 -~~~~~l~~~~-p--~a~i~~~Sa~~g~ 164 (186)
++.+.++... + ..|++++||++|.
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 152 MEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHhcCCCccCccEEECcccccc
Confidence 3334444332 2 2799999999885
No 236
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=1.7e-05 Score=65.88 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=65.8
Q ss_pred EEEEecCCCe-eEEee-e-eecCceEEEEEeCCCCCCCccC--C---CCCCCc-eeEEEEecCCCCCccc--ccHHHHHH
Q 029893 76 LLLCESGGDN-LAANF-S-RELADYIIYIIDVSGGDKIPRK--G---GPGITQ-ADLLVINKTDLASAIG--ADLAVMER 144 (186)
Q Consensus 76 ~iiIEtsG~~-l~~~~-~-~~~ad~~v~VvDa~~~~~~~~~--~---~~~~~~-adiivlNK~Dl~~~~~--~~~~~~~~ 144 (186)
+=|+++.|=- +.+++ + ...-|..++|+.+.+.-.++.. + .+.+.. -.+|+-||+||++... +..+++.+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~ 167 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKE 167 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHH
Confidence 4578888821 11222 1 1123888999999875332221 1 122332 4678899999998621 11233334
Q ss_pred HHHh-hCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 DALR-MRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~l~~-~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++. ....+||+++||..+.|++.|+++|.++.|.
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 4432 3357899999999999999999999998764
No 237
>PRK13796 GTPase YqeH; Provisional
Probab=97.90 E-value=2.5e-05 Score=66.65 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=51.5
Q ss_pred ceEEEEEeCCCCCCCccCCCCC-C-CceeEEEEecCCCCCcccccHHHHHHHHH----hhC-CCCCEEEEeccCCCCHHH
Q 029893 96 DYIIYIIDVSGGDKIPRKGGPG-I-TQADLLVINKTDLASAIGADLAVMERDAL----RMR-DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~~~~~~-~-~~adiivlNK~Dl~~~~~~~~~~~~~~l~----~~~-p~a~i~~~Sa~~g~gi~~ 168 (186)
.++++|+|+.+........... . ..+.++|+||+||.+.. ...+++..+++ ..+ +...++.+||++|.|+++
T Consensus 71 ~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~-~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~e 149 (365)
T PRK13796 71 ALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKS-VKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDE 149 (365)
T ss_pred cEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCc-cCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHH
Confidence 3789999987754321110000 1 34779999999998641 22233333322 222 223799999999999999
Q ss_pred HHHHHHHHH
Q 029893 169 IVNHILQAW 177 (186)
Q Consensus 169 l~~~i~~~~ 177 (186)
+++.+.++.
T Consensus 150 L~~~I~~~~ 158 (365)
T PRK13796 150 LLEAIEKYR 158 (365)
T ss_pred HHHHHHHhc
Confidence 999997764
No 238
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.88 E-value=4e-05 Score=66.96 Aligned_cols=99 Identities=21% Similarity=0.116 Sum_probs=62.3
Q ss_pred cCCcEEEEecCCCeeEE-----------eeeeecCceEEEEEeCCCCCCCccCCC---CCCCceeEEEEecCCCCCcccc
Q 029893 72 FKADLLLCESGGDNLAA-----------NFSRELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-----------~~~~~~ad~~v~VvDa~~~~~~~~~~~---~~~~~adiivlNK~Dl~~~~~~ 137 (186)
.+..+.+++|+|..-.. ...+..+|++++|+|++++......+. .....+.++|+||+|+.+.
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~--- 325 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN--- 325 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc---
Confidence 35567899999942100 012245799999999987653221111 1124578999999999644
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+.+.+ .+.. ..+++.+||++ .|++++++.+.+.+..
T Consensus 326 ~~~~~---~~~~--~~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 326 SLEFF---VSSK--VLNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred chhhh---hhhc--CCceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 22211 1222 34789999998 5888888877776654
No 239
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.87 E-value=5.6e-05 Score=66.13 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=55.5
Q ss_pred CCcEEEEecCCCe--eEE-eeeeecCceEEEEEeCCCCC-CCccC-------C---CCCCCce-eEEEEecCCCCCcc--
Q 029893 73 KADLLLCESGGDN--LAA-NFSRELADYIIYIIDVSGGD-KIPRK-------G---GPGITQA-DLLVINKTDLASAI-- 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~--l~~-~~~~~~ad~~v~VvDa~~~~-~~~~~-------~---~~~~~~a-diivlNK~Dl~~~~-- 135 (186)
+.-+-||+|+|-. +.. ......+|..++|+|+..+. +.... + ...+..+ -++++||+|+.+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 5567889999920 000 01123579999999998752 11111 1 1123444 47789999987321
Q ss_pred cccH----HHHHHHHHhhC---CCCCEEEEeccCCCCHHH
Q 029893 136 GADL----AVMERDALRMR---DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 136 ~~~~----~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~ 168 (186)
.... +++...+++.. ...+++++||++|+|+.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 0222 33333444332 146899999999999853
No 240
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.87 E-value=3.5e-05 Score=61.87 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=40.1
Q ss_pred cCCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
.+..+.|++|+|..- .. ...+..+|.+++|+|+..+..... ........+-++++||+|+..
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 467899999999310 00 012235799999999988754211 111123567899999999875
No 241
>PRK14974 cell division protein FtsY; Provisional
Probab=97.84 E-value=5.8e-05 Score=63.65 Aligned_cols=150 Identities=20% Similarity=0.330 Sum_probs=82.7
Q ss_pred HHHHHHHhcC-CcEEEEEcccC-C-chhHH--HHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcE
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF-T-KEDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL 76 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g-~-~iD~~--~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~ 76 (186)
.+++..+.+. ++++++..|.. . .++.- +....|+ .+.....|..+. ....+++... ...++|+
T Consensus 158 akLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv----~v~~~~~g~dp~-------~v~~~ai~~~-~~~~~Dv 225 (336)
T PRK14974 158 AKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV----KVIKHKYGADPA-------AVAYDAIEHA-KARGIDV 225 (336)
T ss_pred HHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC----ceecccCCCCHH-------HHHHHHHHHH-HhCCCCE
Confidence 3566666654 78999888854 2 22211 1222333 344433444321 1111444333 3468999
Q ss_pred EEEecCCCeeE-Eee--------eeecCceEEEEEeCCCCCCCccC--CCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 77 LLCESGGDNLA-ANF--------SRELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 77 iiIEtsG~~l~-~~~--------~~~~ad~~v~VvDa~~~~~~~~~--~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
|||+|+|..-. ... .....|.+++|+|+..+.+.... .....-..+-+++||.|........ ...
T Consensus 226 VLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~----ls~ 301 (336)
T PRK14974 226 VLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAA----LSI 301 (336)
T ss_pred EEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHH----HHH
Confidence 99999993210 000 00123678899999877543211 1111223699999999987553222 222
Q ss_pred HHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 146 ALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 146 l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
.... ..||.+++ +|+++++|..
T Consensus 302 ~~~~--~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 302 AYVI--GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHH--CcCEEEEe--CCCChhhccc
Confidence 2222 46999998 8999988864
No 242
>PRK12740 elongation factor G; Reviewed
Probab=97.84 E-value=2.3e-05 Score=71.71 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=41.5
Q ss_pred hcCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
..++++.||+|.|.. ... ......+|.+++|+|++.+...... .......+.++|+||+|+...
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 357899999999931 000 0112357999999999886542211 112235688999999998754
No 243
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.81 E-value=7.7e-05 Score=64.73 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=72.3
Q ss_pred cCCcEEEEecCCCeeEEeee------eecCceEEEEEeCCCCCCCccCCCC----CCCceeEEEEecCCCCCccccc-HH
Q 029893 72 FKADLLLCESGGDNLAANFS------RELADYIIYIIDVSGGDKIPRKGGP----GITQADLLVINKTDLASAIGAD-LA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~------~~~ad~~v~VvDa~~~~~~~~~~~~----~~~~adiivlNK~Dl~~~~~~~-~~ 140 (186)
.+.-.=||+|.| - +.|. ....|.++++|||.+|...+.++.- ......|+|+||+|..+++.++ .+
T Consensus 66 ~~~~INIvDTPG--H-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd 142 (603)
T COG1217 66 NGTRINIVDTPG--H-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVD 142 (603)
T ss_pred CCeEEEEecCCC--c-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHH
Confidence 356667889999 2 2221 1246999999999999877665532 2345689999999998764322 23
Q ss_pred HHHHHHHhhC-----CCCCEEEEeccCCC----------CHHHHHHHHHHHHHHhhc
Q 029893 141 VMERDALRMR-----DGGPFIFAQVKHGL----------GVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~~~~~l~~~~-----p~a~i~~~Sa~~g~----------gi~~l~~~i~~~~~~~~~ 182 (186)
++....-.+. -.-|+++.||+.|. .+..||+.|.++.|.-++
T Consensus 143 ~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 143 EVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred HHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 3333333322 13599999998763 578899999999886543
No 244
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.80 E-value=0.00017 Score=55.44 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred CcEEEEecCCC----eeEEeeeeecCceEEEEEeCCCCCCCc------cCC-----CCC-CCceeEEEEecCCCCCc--c
Q 029893 74 ADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIP------RKG-----GPG-ITQADLLVINKTDLASA--I 135 (186)
Q Consensus 74 ~D~iiIEtsG~----~l~~~~~~~~ad~~v~VvDa~~~~~~~------~~~-----~~~-~~~adiivlNK~Dl~~~--~ 135 (186)
.-.-|=+|.|- ++- ...++.+|..+++.|........ .++ +.. -.+|-+|+.||+|+-+. .
T Consensus 58 vtlQiWDTAGQERFqsLg-~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r 136 (210)
T KOG0394|consen 58 VTLQIWDTAGQERFQSLG-VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR 136 (210)
T ss_pred EEEEEEecccHHHhhhcc-cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc
Confidence 44455678882 111 12357899999999987653211 111 111 34588999999999653 1
Q ss_pred cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 136 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 136 ~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
....++..++.++ +...|+|+||||.+.|+++.|+.+.+.
T Consensus 137 ~VS~~~Aq~WC~s-~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 137 QVSEKKAQTWCKS-KGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred eeeHHHHHHHHHh-cCCceeEEecccccccHHHHHHHHHHH
Confidence 1233455555555 457899999999999999999988754
No 245
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.79 E-value=9.2e-05 Score=57.65 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=57.7
Q ss_pred ceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHh-h---CCCCC-EEEEeccCCCCH
Q 029893 96 DYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALR-M---RDGGP-FIFAQVKHGLGV 166 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~-~---~p~a~-i~~~Sa~~g~gi 166 (186)
..++.++|+.++....+ .+..+...+.++|+||+|.++. .+..+....+++ + .++.+ ++.+|+.++.|+
T Consensus 108 ~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~--~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 108 KGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK--SERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh--hHHHHHHHHHHHHhcCCCCccceEEEEecccccCH
Confidence 35689999999765422 2344566789999999999986 444433344442 2 22222 889999999999
Q ss_pred HHHHHHHHHHHHH
Q 029893 167 EEIVNHILQAWEA 179 (186)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (186)
+++...|.+.+..
T Consensus 186 ~~l~~~i~~~~~~ 198 (200)
T COG0218 186 DELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887654
No 246
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.77 E-value=3.4e-05 Score=59.00 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=34.7
Q ss_pred ceEEEEEeCCCCCCCcc----CC--CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhC
Q 029893 96 DYIIYIIDVSGGDKIPR----KG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMR 150 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~----~~--~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~ 150 (186)
|++++|+|+..+..... .+ ......+.++|+||+|++++ ..+....+.+++..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~--~~l~~~~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK--ENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCH--HHHHHHHHHHHhhC
Confidence 68999999977533211 11 11234689999999999976 55655555655543
No 247
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.77 E-value=9.3e-05 Score=62.52 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=62.7
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCC--CCCceeEEEEecCCCCCcccccHHHHHHHHHhhC
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLASAIGADLAVMERDALRMR 150 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~--~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~ 150 (186)
--|+|+.|-+| -+-|+ -..|.-|+|+|+.++-.....|+. .++.||++++||+|-+.. ....++.+.++++|
T Consensus 224 ~aD~IlwdGgn--ndfPf--vkpd~~Ivvvda~rpg~ei~~~pGe~~irlAD~VIItkveea~~--~kvrkI~~~I~~iN 297 (449)
T COG2403 224 EADFILWDGGN--NDFPF--VKPDLHIVVVDALRPGEEIGSFPGELRIRLADLVIITKVEEAMA--EKVRKIVRNIEEIN 297 (449)
T ss_pred hccEEEEeCCC--CCCCc--ccCCeeEEEecCCCCchhhccCCCceeeeeccEEEEecccccch--HHHHHHHHHHHhhC
Confidence 34999999999 22233 245888999999885544445544 367799999999999888 68888999999999
Q ss_pred CCCCEEEE
Q 029893 151 DGGPFIFA 158 (186)
Q Consensus 151 p~a~i~~~ 158 (186)
|.|.|+.+
T Consensus 298 P~A~Vi~~ 305 (449)
T COG2403 298 PKAEVILA 305 (449)
T ss_pred CCcEEEec
Confidence 99988766
No 248
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.75 E-value=1.8e-05 Score=71.12 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=70.1
Q ss_pred hcCCcEEEEecCCCe-eEEeee----------e-ecCceEEEEEeCCCCCCCccC--CCCCCCceeEEEEecCCCCCccc
Q 029893 71 LFKADLLLCESGGDN-LAANFS----------R-ELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~~~~~----------~-~~ad~~v~VvDa~~~~~~~~~--~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
..+-++-+|+.+|.- + .+++ . +..|++|.|+|+++-+....- ...+++.+.++++|++|.+....
T Consensus 47 ~~~~~i~ivDLPG~YSL-~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 47 YKGHEIEIVDLPGTYSL-TAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRG 125 (653)
T ss_pred ecCceEEEEeCCCcCCC-CCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcC
Confidence 346778999999941 1 1111 1 135999999999986532110 11236778999999999986632
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
-.++ .+.+.+.. +.|++++||++|+|++++++.+.+..+..
T Consensus 126 i~ID--~~~L~~~L-GvPVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 126 IRID--IEKLSKLL-GVPVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred Cccc--HHHHHHHh-CCCEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 1221 22333322 57999999999999999999887655443
No 249
>PRK12739 elongation factor G; Reviewed
Probab=97.74 E-value=3.3e-05 Score=70.99 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred cCCcEEEEecCCCe--eEEe-eeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN--LAAN-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~--l~~~-~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.||+|+|.. .... .....+|.+++|+|+..+...+.. +......+.++++||+|+.+.
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 47789999999931 0000 012346999999999887543211 112234578999999999854
No 250
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=7.1e-05 Score=62.87 Aligned_cols=113 Identities=17% Similarity=0.265 Sum_probs=72.7
Q ss_pred hhhhhcCCcEEEEecCCC-eeEEee--eeecCceEEEEEeCCCCCCCccCC----CCCCCceeEEEEecCCCCCccc--c
Q 029893 67 ELSNLFKADLLLCESGGD-NLAANF--SRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIG--A 137 (186)
Q Consensus 67 ~l~~~~~~D~iiIEtsG~-~l~~~~--~~~~ad~~v~VvDa~~~~~~~~~~----~~~~~~adiivlNK~Dl~~~~~--~ 137 (186)
.|.+..+..+-+|++.|- .+..+. ....-|+.++|+|+..|.+.+... .+.+...-++|+||+|+.++.. .
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~s 142 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRAS 142 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhh
Confidence 455556789999999992 111111 001238889999999886654321 2223445789999999887621 2
Q ss_pred cHHHHHHHHHhh------CCCCCEEEEeccCC----CCHHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRM------RDGGPFIFAQVKHG----LGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 ~~~~~~~~l~~~------~p~a~i~~~Sa~~g----~gi~~l~~~i~~~~~~ 179 (186)
.++.....+++- ...+||+++||+.| +++.+|.+.+...+.+
T Consensus 143 ki~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 143 KIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 333333344321 24589999999999 8899998888765543
No 251
>PRK00007 elongation factor G; Reviewed
Probab=97.72 E-value=5.3e-05 Score=69.71 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=41.5
Q ss_pred hcCCcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
..+..+.||+|.|. . .| ....+|++++|+|+..+...+.. +......+.++++||+|+.+.
T Consensus 72 ~~~~~~~liDTPG~--~-~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 72 WKDHRINIIDTPGH--V-DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred ECCeEEEEEeCCCc--H-HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34778999999992 1 11 12346999999999887543321 122345678999999999753
No 252
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.72 E-value=2.9e-05 Score=61.78 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=54.3
Q ss_pred CCcEEEEecCCCeeEEee-eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEE-EEecCCCCCcccccHHHHHHHH
Q 029893 73 KADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLL-VINKTDLASAIGADLAVMERDA 146 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~-~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adii-vlNK~Dl~~~~~~~~~~~~~~l 146 (186)
+..+.|+||.|. +.... ....+|++++|+|+..+...... .......+.++ |+||+|+.++. ...+...+.+
T Consensus 82 ~~~i~~vDtPg~-~~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~-~~~~~~~~~l 159 (225)
T cd01882 82 KRRLTFIECPND-INAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKN-KTLRKTKKRL 159 (225)
T ss_pred CceEEEEeCCch-HHHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcH-HHHHHHHHHH
Confidence 456788888882 10000 11347999999999876542211 11112345454 99999998542 2233444333
Q ss_pred H-----hhCCCCCEEEEeccCCC
Q 029893 147 L-----RMRDGGPFIFAQVKHGL 164 (186)
Q Consensus 147 ~-----~~~p~a~i~~~Sa~~g~ 164 (186)
+ +..++++++++||++.-
T Consensus 160 ~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 160 KHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHhhCCCCcEEEEeeccCC
Confidence 3 35688999999999873
No 253
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.71 E-value=0.00012 Score=52.88 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=40.0
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 174 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~ 174 (186)
..+.++++||+|+... ....+....+... +..+++++||++|.|++++++++.
T Consensus 108 ~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~-~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDA--KLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcc--hhhHHHHHHHhhc-cCCceEEeecCCCCCHHHHHHHhh
Confidence 5689999999999875 3333344344433 456799999999999999999874
No 254
>PLN03126 Elongation factor Tu; Provisional
Probab=97.68 E-value=4.6e-05 Score=67.14 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=55.0
Q ss_pred cCCcEEEEecCCCe--eEEee-eeecCceEEEEEeCCCCCCCcc-CC---CCCCCce-eEEEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPR-KG---GPGITQA-DLLVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~--l~~~~-~~~~ad~~v~VvDa~~~~~~~~-~~---~~~~~~a-diivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.||+|+|-. +.... ....+|++++|+|+..+...+. .+ ......+ .++++||+|+.+.. ...+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~-~~~~~i~ 220 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE-ELLELVE 220 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHH-HHHHHHH
Confidence 35678999999921 00011 1124799999999998754321 11 1123456 46789999998741 1122
Q ss_pred -HHHHHHHhh--C-CCCCEEEEeccCCC
Q 029893 141 -VMERDALRM--R-DGGPFIFAQVKHGL 164 (186)
Q Consensus 141 -~~~~~l~~~--~-p~a~i~~~Sa~~g~ 164 (186)
++...++.. . ...|++++||.+|.
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 333334432 1 25799999999884
No 255
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=8.8e-05 Score=55.11 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
..++=+-+|.|-.. ..+..++.++..+++.|.++.+... ..|. .....+.++|.||+|+-+++.-..++
T Consensus 69 RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~ 148 (193)
T KOG0093|consen 69 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHER 148 (193)
T ss_pred EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHH
Confidence 46677777777211 1233456788999999998854321 1121 22345789999999998875433455
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.+....++. -..|++|||.+.+++.+++.+......+++
T Consensus 149 g~~l~~~LG--fefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 149 GRQLADQLG--FEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHhC--hHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 555555542 488999999999999999988776655544
No 256
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.67 E-value=4.6e-05 Score=59.23 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=65.2
Q ss_pred CCcEEEEecCCCeeE----Ee----eeeecCceEEEEEeCCCCCCCccC---CCCCCCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNLA----AN----FSRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~----~~----~~~~~ad~~v~VvDa~~~~~~~~~---~~~~~~~adiivlNK~Dl~~~~~----- 136 (186)
.+++.+++|.|..-. .. ..+..+|+++++.|.. ....... .......+.++|+||+|+..+..
T Consensus 51 ~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~-~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~ 129 (197)
T cd04104 51 FPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR-FSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKP 129 (197)
T ss_pred CCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC-CCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhcccc
Confidence 468899999994210 01 1123457777765432 1111111 11123457799999999964311
Q ss_pred ------ccHHHHHHHHHhhC-----CCCCEEEEecc--CCCCHHHHHHHHHHHHHHhh
Q 029893 137 ------ADLAVMERDALRMR-----DGGPFIFAQVK--HGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 137 ------~~~~~~~~~l~~~~-----p~a~i~~~Sa~--~g~gi~~l~~~i~~~~~~~~ 181 (186)
..++++++.+.+.. +..+||.+|+. .+.|+..|.+.+...+|..+
T Consensus 130 ~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 130 RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 11233333443322 35699999998 68999999999999998765
No 257
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.65 E-value=3.4e-05 Score=64.83 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCcEEEEecCCC-----eeEEeeeeecCceEEEEEeCCCCCCCccC---C-CCCCCc-eeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGD-----NLAANFSRELADYIIYIIDVSGGDKIPRK---G-GPGITQ-ADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~-----~l~~~~~~~~ad~~v~VvDa~~~~~~~~~---~-~~~~~~-adiivlNK~Dl~~~~~~~~~~~ 142 (186)
+-++|+.+|+|= |++.-. .-+|+.|+++|+..|...+.. + ...+.. -.++.+||+||++...+..+++
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGA--STadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGA--STADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cceEEEecCCcHHHHhhhhhccc--ccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 568999999992 111111 236899999999887533211 1 112322 4678899999998743444444
Q ss_pred HHHH----HhhC-CCCCEEEEeccCCCCHH
Q 029893 143 ERDA----LRMR-DGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 143 ~~~l----~~~~-p~a~i~~~Sa~~g~gi~ 167 (186)
.... +++. .....+|+||+.|.|+-
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 4333 2222 34588999999999984
No 258
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=3.1e-05 Score=58.91 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=61.6
Q ss_pred ecCceEEEEEeCCCCCCCccC---------CCCCCCceeEEEEecCCCCCcccccHHHHHHHHH--hhC--CCCCEEEEe
Q 029893 93 ELADYIIYIIDVSGGDKIPRK---------GGPGITQADLLVINKTDLASAIGADLAVMERDAL--RMR--DGGPFIFAQ 159 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~---------~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~--~~~--p~a~i~~~S 159 (186)
..+|.+++++|+++.+..+.. ...+-..|.+++.||-|+-+. .+.+++...+. +.. |..++.++|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccch
Confidence 357999999999986543221 112234578999999999776 34444443333 333 456999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q 029893 160 VKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 160 a~~g~gi~~l~~~i~~~~~~~ 180 (186)
|.+|+|+++-++|+.+.++..
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999888765
No 259
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.62 E-value=4.4e-05 Score=62.49 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=54.6
Q ss_pred hcCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 71 LFKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
..+..+.||+|+|.. .... .....+|.+++|+|+..+..... ........+.++++||+|+.+. ..+...
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a---~~~~~~ 137 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA---DFFRVV 137 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC---CHHHHH
Confidence 347789999999931 0000 12235799999999988754321 1122345688999999999754 233333
Q ss_pred HHHHh---hCCCCCEEEEeccC
Q 029893 144 RDALR---MRDGGPFIFAQVKH 162 (186)
Q Consensus 144 ~~l~~---~~p~a~i~~~Sa~~ 162 (186)
+.+++ ..+...++++|+..
T Consensus 138 ~~l~~~l~~~~~~~~~Pisa~~ 159 (270)
T cd01886 138 EQIREKLGANPVPLQLPIGEED 159 (270)
T ss_pred HHHHHHhCCCceEEEeccccCC
Confidence 33333 23556778888863
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.61 E-value=0.00029 Score=57.80 Aligned_cols=148 Identities=16% Similarity=0.268 Sum_probs=81.1
Q ss_pred HHHHHHhcC-CcEEEEEcccC-Cc-hhHH--HHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEE
Q 029893 3 ALCKFLRDK-YSLAAVTNDIF-TK-EDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 77 (186)
Q Consensus 3 ~~~~~l~~~-~~vaVi~nd~g-~~-iD~~--~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~i 77 (186)
+++.++.+. +|+++|--|.. .+ .+.. +..+.+. ++.....+..+. ....+++... ...++|+|
T Consensus 91 kLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i----~~~~~~~~~dp~-------~~~~~~l~~~-~~~~~D~V 158 (272)
T TIGR00064 91 KLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV----DVIKQKEGADPA-------AVAFDAIQKA-KARNIDVV 158 (272)
T ss_pred HHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe----EEEeCCCCCCHH-------HHHHHHHHHH-HHCCCCEE
Confidence 566666654 89999999964 32 3211 2233333 334332322111 1111333332 24689999
Q ss_pred EEecCCCeeEE-e--------------eeeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 78 LCESGGDNLAA-N--------------FSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 78 iIEtsG~~l~~-~--------------~~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
||+|+|..-.. . +.....|-+++|+|++.+.+... .+...+ ..+-+++||.|.......
T Consensus 159 iIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-~~~g~IlTKlDe~~~~G~-- 235 (272)
T TIGR00064 159 LIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-GLTGIILTKLDGTAKGGI-- 235 (272)
T ss_pred EEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-CCCEEEEEccCCCCCccH--
Confidence 99999932100 0 00112577899999987643211 111111 258999999998755322
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
+....... ..|+.+++ +|+++++|..
T Consensus 236 --~l~~~~~~--~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 236 --ILSIAYEL--KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred --HHHHHHHH--CcCEEEEe--CCCChHhCcc
Confidence 22222222 36899888 8999988754
No 261
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00015 Score=53.66 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=55.6
Q ss_pred eecCceEEEEEeCCCCCCCccC--------CCCCCCc-eeEEEEecCCCCCcccccHHHHHHHH--Hhh-CCCCCEEEEe
Q 029893 92 RELADYIIYIIDVSGGDKIPRK--------GGPGITQ-ADLLVINKTDLASAIGADLAVMERDA--LRM-RDGGPFIFAQ 159 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~~~~~~--------~~~~~~~-adiivlNK~Dl~~~~~~~~~~~~~~l--~~~-~p~a~i~~~S 159 (186)
+...|.+|+|||.++.+..... ..+.+.. .-+++.||.|.... ....++...+ .++ +....|+.+|
T Consensus 83 y~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 83 YADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred hcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeec
Confidence 3456889999999886543211 0122333 46778999997654 2222222211 111 2346999999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 029893 160 VKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 160 a~~g~gi~~l~~~i~~~~~~ 179 (186)
|.+|+|+++.++|+.+-++.
T Consensus 161 A~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred cccccCCcHHHHHHHHHHhc
Confidence 99999999999999887654
No 262
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.57 E-value=0.00039 Score=58.28 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=81.1
Q ss_pred HHHHHHhcC-CcEEEEEcccC-C-chhHH--HHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEE
Q 029893 3 ALCKFLRDK-YSLAAVTNDIF-T-KEDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 77 (186)
Q Consensus 3 ~~~~~l~~~-~~vaVi~nd~g-~-~iD~~--~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~i 77 (186)
+++..+... ++|+++.-|.. . .++.. .-.+.++ .++....|.-+. ....+++... ...++|+|
T Consensus 133 kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i----~~~~~~~~~dpa-------~~v~~~l~~~-~~~~~D~V 200 (318)
T PRK10416 133 KLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV----PVIAQKEGADPA-------SVAFDAIQAA-KARGIDVL 200 (318)
T ss_pred HHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc----eEEEeCCCCCHH-------HHHHHHHHHH-HhCCCCEE
Confidence 456666654 89999998875 3 22221 1122233 233322232221 1111333322 24689999
Q ss_pred EEecCCCeeE-E--------------eeeeecCceEEEEEeCCCCCCCccCCCCC--CCceeEEEEecCCCCCcccccHH
Q 029893 78 LCESGGDNLA-A--------------NFSRELADYIIYIIDVSGGDKIPRKGGPG--ITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 78 iIEtsG~~l~-~--------------~~~~~~ad~~v~VvDa~~~~~~~~~~~~~--~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
||+|+|..-. . ...+...+-+++|+|++.+.......... .-..+-+|+||.|..... -
T Consensus 201 iIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~----G 276 (318)
T PRK10416 201 IIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKG----G 276 (318)
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCCCc----c
Confidence 9999993210 0 00011235678999999765432211111 113578999999965442 2
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
.+....... ..||.+++ +|+++++|..
T Consensus 277 ~~l~~~~~~--~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 277 VVFAIADEL--GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred HHHHHHHHH--CCCEEEEe--CCCChhhCcc
Confidence 233333333 46999999 8999988854
No 263
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.56 E-value=0.00063 Score=50.63 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred ecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHH--hhC-CCCCEEEEec
Q 029893 93 ELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERDAL--RMR-DGGPFIFAQV 160 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~--~~~-p~a~i~~~Sa 160 (186)
+..+.++++||+.+.+.... ..+...+.|.+++.||.|+.++ -...++..++. ++. ...-.|.+|+
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEE
Confidence 35688999999998654321 1123346789999999999877 33344444332 221 2346799999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 029893 161 KHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 161 ~~g~gi~~l~~~i~~~~~~~ 180 (186)
++..+++.+++|+.++.+..
T Consensus 165 ke~~Nid~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHSKSL 184 (186)
T ss_pred cCCccHHHHHHHHHHHhhhh
Confidence 99999999999999876644
No 264
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.54 E-value=0.00019 Score=64.10 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=40.6
Q ss_pred cCCcEEEEecCCCe-eEE-e-eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~-~-~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.+++|.|.. ... . ..+..+|.+++|+|+..+..... ........+.++++||+|+...
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 36778999999921 000 0 11235799999999988753221 1122345689999999998653
No 265
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.54 E-value=0.00019 Score=57.40 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=38.4
Q ss_pred ceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 120 ~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.++|+||+|+.+. .+.+. +.. ..+++++||++|.|++++++.+.+.+.
T Consensus 177 ~p~iiV~NK~Dl~~~--~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 177 IPCLYVYNKIDLISI--EELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEECccCCCH--HHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 478899999999866 33332 211 236899999999999999999988764
No 266
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00013 Score=63.54 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=69.8
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeE-----Eee-------eeecCceEEEEEeCCCCCCCcc-C---------------C
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLA-----ANF-------SRELADYIIYIIDVSGGDKIPR-K---------------G 114 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~-----~~~-------~~~~ad~~v~VvDa~~~~~~~~-~---------------~ 114 (186)
|+++...+-.++-+.+++|+|+.-. ... ....+|++++|+|+.+.+.... + .
T Consensus 305 Daiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~ 384 (531)
T KOG1191|consen 305 DAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIV 384 (531)
T ss_pred hhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEe
Confidence 4555555567999999999995320 001 1234799999999955322110 0 0
Q ss_pred CCCCCceeEEEEecCCCCCcccccHHHHHHHHH-hhCCCCCE-EEEeccCCCCHHHHHHHHHHHHH
Q 029893 115 GPGITQADLLVINKTDLASAIGADLAVMERDAL-RMRDGGPF-IFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 115 ~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~-~~~p~a~i-~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..+.....+++.||+|+.++..........+.. ...+.-++ .++|++|++|++.|...+.+.+.
T Consensus 385 ~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 385 NKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 112346789999999998762111110111111 11222344 45999999999999998877654
No 267
>PRK13351 elongation factor G; Reviewed
Probab=97.52 E-value=0.00018 Score=66.20 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=40.9
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. ... ......+|.+++|+|+..+...... .......+.++++||+|+...
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 46788999999931 000 0122457999999999887543211 112235678999999998754
No 268
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.50 E-value=0.00021 Score=53.16 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=70.6
Q ss_pred cCCcEEEEecCCCe----eEEeeeeecCceEEEEEeCCCCCCCcc--CCC----CCC-CceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG----PGI-TQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~----l~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~----~~~-~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.....-|-+|+|-. +..+ .++..+.+++|.|+++++.... .+. .+. ..+-++|.||.|..+...-..+
T Consensus 55 ~~VkLqIwDtAGqErFrtitst-yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~ 133 (198)
T KOG0079|consen 55 DRVKLQIWDTAGQERFRTITST-YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTE 133 (198)
T ss_pred cEEEEEEeecccHHHHHHHHHH-HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehH
Confidence 35666677888821 0011 2456789999999999875321 111 111 3478999999999876323334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
..+.+..++ ....|++|||..++++..|.-|.+..-..+
T Consensus 134 dAr~~A~~m--gie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 134 DARAFALQM--GIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHhc--CchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 445554444 468999999999999999988877655443
No 269
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0002 Score=65.27 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCcEEEEecCCC----eeEEeeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCccc--------
Q 029893 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG-------- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~----~l~~~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~-------- 136 (186)
-|-+++|+|.|- ++. .....++|+.|+|+|..+|.+.+.. ..+.-..+-||.+||+|.+=.+.
T Consensus 539 vPg~lvIdtpghEsFtnlR-srgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLR-SRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCeeEEecCCCchhhhhhh-hccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence 578999999992 111 1112357999999999999765432 22233458899999999752110
Q ss_pred --------ccHHHHHHHHHh---------hC-----------CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 137 --------ADLAVMERDALR---------MR-----------DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 137 --------~~~~~~~~~l~~---------~~-----------p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
....++..++.. +| .+.-+++|||.+|+|+.+|+-+|.+.-+.
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 011112222211 11 23578999999999999999988765543
No 270
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.46 E-value=4.2e-05 Score=61.50 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=53.7
Q ss_pred CCcEEEEecCCCeeEEee-------------eeecCceEEEEEeCCCCCCCccCCC----------CCCCceeEEEEecC
Q 029893 73 KADLLLCESGGDNLAANF-------------SRELADYIIYIIDVSGGDKIPRKGG----------PGITQADLLVINKT 129 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~-------------~~~~ad~~v~VvDa~~~~~~~~~~~----------~~~~~adiivlNK~ 129 (186)
..+|++++|+| ...-| .....-++|+++|+....+. .++. -.++.|.+.|+||+
T Consensus 90 ~~~y~l~DtPG--QiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~-~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 90 EDDYLLFDTPG--QIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDP-SKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp H-SEEEEE--S--SHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSH-HHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred CCcEEEEeCCC--CEEEEEechhHHHHHHHHhhhcceEEEEEEecccccCh-hhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 45999999999 22111 00112357899998765431 1111 12567999999999
Q ss_pred CCCCccc-cc---------H--------HHHHHHHHhh---CCCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 130 DLASAIG-AD---------L--------AVMERDALRM---RDGG-PFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 130 Dl~~~~~-~~---------~--------~~~~~~l~~~---~p~a-~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
|+.++.. .. + ..+.+.+.+. +... +++++|+++++|+++|+..+.+...
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 9998310 00 0 1111222222 2344 8999999999999999999987653
No 271
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.43 E-value=0.00062 Score=50.34 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=69.2
Q ss_pred hcCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--C-------CCCCCCceeEEEEecCCCCCccccc
Q 029893 71 LFKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~-------~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
...+.+-|.|++|...- .+..+..+|.+++++|..+...... . +.. -..+.+++.||.|+.+...-.
T Consensus 45 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~ 123 (162)
T PF00071_consen 45 GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVS 123 (162)
T ss_dssp TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccch
Confidence 34667888999993210 0112345789999999877432110 1 111 235789999999998742234
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.++..+..++.+ .+++++||+++.|+.++|..+.+.+
T Consensus 124 ~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 124 VEEAQEFAKELG--VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555555544 8999999999999999999887654
No 272
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.37 E-value=0.00018 Score=57.34 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~ 132 (186)
++.+.|++|+|.. ... ...+..+|.+++|+|+.++...+.. .......+.++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 5678899999921 000 1123457999999999987543211 1111235789999999986
No 273
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.34 E-value=0.00097 Score=55.19 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=49.7
Q ss_pred CceEEEEEeCCCCCCCc---cCC---CCCCCceeEEEEecCCCCCcccccHHH--HHHHHHhhCCCCCEEEEeccCCCCH
Q 029893 95 ADYIIYIIDVSGGDKIP---RKG---GPGITQADLLVINKTDLASAIGADLAV--MERDALRMRDGGPFIFAQVKHGLGV 166 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~~---~~~---~~~~~~adiivlNK~Dl~~~~~~~~~~--~~~~l~~~~p~a~i~~~Sa~~g~gi 166 (186)
.|-+++|+.+..++-.. ..+ .+.-...-+|++||+||+++ +.... .....+.+ ..+++.+|++++.|+
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~--~~~~~~~~~~~y~~~--gy~v~~~s~~~~~~~ 155 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD--EEAAVKELLREYEDI--GYPVLFVSAKNGDGL 155 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc--hHHHHHHHHHHHHhC--CeeEEEecCcCcccH
Confidence 35567777776654221 111 11223467999999999987 44432 33233333 469999999999999
Q ss_pred HHHHHHHHH
Q 029893 167 EEIVNHILQ 175 (186)
Q Consensus 167 ~~l~~~i~~ 175 (186)
++|.+++..
T Consensus 156 ~~l~~~l~~ 164 (301)
T COG1162 156 EELAELLAG 164 (301)
T ss_pred HHHHHHhcC
Confidence 999988754
No 274
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.34 E-value=0.00025 Score=59.39 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=43.8
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHH-HHHHHHHHh
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN-HILQAWEAS 180 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~-~i~~~~~~~ 180 (186)
.+|.++|+||+|+.+. .+. .+.++...+..+++++||+.+.|+++|.+ .+.+++|+.
T Consensus 214 ~KPvI~VlNK~Dl~~~--~~~---~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 214 SKPMVIAANKADIPDA--ENN---ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCcEEEEEEHHHccCh--HHH---HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 3589999999998654 222 22444445677999999999999999998 699998764
No 275
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.29 E-value=0.00046 Score=52.07 Aligned_cols=102 Identities=20% Similarity=0.106 Sum_probs=68.6
Q ss_pred cCCcEEEEecCCCe---eEEeeeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDN---LAANFSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~---l~~~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
....+-|=+|+|-. --.|..++.|..+|+|.|.+..+... . .|...-....++|.||+|.-+++....
T Consensus 58 ~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~r 137 (209)
T KOG0080|consen 58 KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDR 137 (209)
T ss_pred ceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccH
Confidence 46677888999921 01234567889999999998865421 1 122222345789999999775533344
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++-.+..++. .+-.+++||++.+|++..|+.+..
T Consensus 138 eEG~kfAr~h--~~LFiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 138 EEGLKFARKH--RCLFIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred HHHHHHHHhh--CcEEEEcchhhhccHHHHHHHHHH
Confidence 4445555554 367899999999999888887654
No 276
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.28 E-value=0.00065 Score=60.68 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=40.0
Q ss_pred hcCCcEEEEecCCCe-eEE-e-eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCC
Q 029893 71 LFKADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~~-~-~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
..+..+.|++|+|.. ... . ..+..+|.+|+|+|+..+..... ........+.++++||+|+..
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 347888999999931 000 0 11234799999999988643221 111223458899999999853
No 277
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.27 E-value=0.0008 Score=50.86 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=68.2
Q ss_pred hcCCcEEEEecCCCeeEEee---eeecCceEEEEEeCCCCCCCccC--------CCCC-CCceeEEEEecCCCCCccccc
Q 029893 71 LFKADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPRK--------GGPG-ITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~~---~~~~ad~~v~VvDa~~~~~~~~~--------~~~~-~~~adiivlNK~Dl~~~~~~~ 138 (186)
..++...+-|--|-.--.+| +++.+|..|+|+|.+.....+.- ..++ ...+.+++.||.|+.+. -.
T Consensus 57 ~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~ 134 (185)
T KOG0073|consen 57 YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LS 134 (185)
T ss_pred ecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cC
Confidence 45677777777771111222 24567999999999664322110 1122 44689999999999865 33
Q ss_pred HHHHH--HHHHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 139 LAVME--RDALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 139 ~~~~~--~~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.+. ..+.++. .+.+++.+||.+|+++.+=++|+...+.
T Consensus 135 ~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 135 LEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred HHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence 44333 2344443 3569999999999999988888876554
No 278
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.25 E-value=0.00018 Score=52.63 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=57.6
Q ss_pred eeecCceEEEEEeCCCCCCCc--cCCCC------CCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccC
Q 029893 91 SRELADYIIYIIDVSGGDKIP--RKGGP------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH 162 (186)
Q Consensus 91 ~~~~ad~~v~VvDa~~~~~~~--~~~~~------~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~ 162 (186)
.++.+|..+++.|..+..... ..+.. +-..+..++.||+|+.+++....+. -+.+.+.+ ..|..++||+|
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~dd-g~kla~~y-~ipfmetsakt 144 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDD-GEKLAEAY-GIPFMETSAKT 144 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccch-HHHHHHHH-CCCceeccccc
Confidence 456789999999987754321 11111 1234678999999998753111112 22333322 46999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 029893 163 GLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 163 g~gi~~l~~~i~~~~~~~~ 181 (186)
|.+++--|-.|.+.+...+
T Consensus 145 g~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 145 GFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred cccHhHHHHHHHHHHHHhc
Confidence 9999999888887665543
No 279
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.24 E-value=0.00056 Score=62.96 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=56.5
Q ss_pred hcCCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 71 LFKADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
..+..+.|++|+|..- .. ......+|.+++|+|+..+...+.. +......+.++++||+|+... ......
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~---~~~~~~ 148 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA---NFLRVV 148 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC---CHHHHH
Confidence 3477899999999310 00 0112346999999999887543211 112245688999999999865 344455
Q ss_pred HHHHhhC---CCCCEEEEeccCC
Q 029893 144 RDALRMR---DGGPFIFAQVKHG 163 (186)
Q Consensus 144 ~~l~~~~---p~a~i~~~Sa~~g 163 (186)
+.+++.. +...++++|+.++
T Consensus 149 ~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 149 NQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHhCCCceeEEeccccCCC
Confidence 5554433 3345788888766
No 280
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0006 Score=52.60 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=65.7
Q ss_pred hcCCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCc--cCCCC---C---CCceeEEEEecCCCCCcccccH
Q 029893 71 LFKADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIP--RKGGP---G---ITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~---~---~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.++..+=|-+|.|-. .. ....++.+-.+++|.|.++.+... ..+.. | -...-+++.||+||...+.-..
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~ 131 (216)
T KOG0098|consen 52 GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSK 131 (216)
T ss_pred CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccH
Confidence 456777788888821 00 111345678889999998765421 11110 1 1124688899999987643344
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++-+.+.++. .-...+|||+|++|+++.|..+..
T Consensus 132 EEGeaFA~eh--gLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 132 EEGEAFAREH--GLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred HHHHHHHHHc--CceeehhhhhhhhhHHHHHHHHHH
Confidence 5555555652 346779999999999999986654
No 281
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00066 Score=58.17 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCcEEEEecCCCe--eEEee-eeecCceEEEEEeCCCCCC-CccCCCCC----------CCc-eeEEEEecCCCCCcccc
Q 029893 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDK-IPRKGGPG----------ITQ-ADLLVINKTDLASAIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~--l~~~~-~~~~ad~~v~VvDa~~~~~-~~~~~~~~----------~~~-adiivlNK~Dl~~~~~~ 137 (186)
.+-+-|++|.|-+ +-... ....||+.|+|+|+..+.- .......| +.. .-++++||+|+++..+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 4567788888821 00000 1224799999999988631 10011111 222 46888999999975333
Q ss_pred cHHHHHHHHHh------hCC-CCCEEEEeccCCCCHHHH
Q 029893 138 DLAVMERDALR------MRD-GGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 138 ~~~~~~~~l~~------~~p-~a~i~~~Sa~~g~gi~~l 169 (186)
..+++...+.. .+| ..+++++||.+|.|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 44444443332 233 368999999999998653
No 282
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.003 Score=56.22 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=56.8
Q ss_pred cCCcEEEEecCCCeeEEe--e-eeecCceEEEEEeCCCCC-CCccCCCCC----------CCc-eeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAAN--F-SRELADYIIYIIDVSGGD-KIPRKGGPG----------ITQ-ADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~-~~~~ad~~v~VvDa~~~~-~~~~~~~~~----------~~~-adiivlNK~Dl~~~~~ 136 (186)
...-+.++++.|..--.| . ...-+|+.++|+|++.+. +......+| +.. .-++++||.|+++-..
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 345667777777210000 0 112368999999998752 111111111 222 4788899999997533
Q ss_pred ccHHHHHHHHHhh----C----CCCCEEEEeccCCCCHHHH
Q 029893 137 ADLAVMERDALRM----R----DGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 137 ~~~~~~~~~l~~~----~----p~a~i~~~Sa~~g~gi~~l 169 (186)
...+.+...+... . +....+++|+.+|+|+-..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4444444443322 1 3458999999999998554
No 283
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.92 E-value=0.00039 Score=56.59 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=57.2
Q ss_pred cCCcEEEEecCCCe-eEE-e-eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 72 FKADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~-~-~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
.+.++.||+|+|.. ... . .....+|.+++|+|++.+..... ......+.+.++++||+|+... ..+...+
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~---~~~~~~~ 138 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA---DFDKTLA 138 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC---CHHHHHH
Confidence 46789999999931 000 0 11235799999999988754321 1122345688999999998865 3445555
Q ss_pred HHHhhCCCCCEEEE--eccCCCCHHHHHH
Q 029893 145 DALRMRDGGPFIFA--QVKHGLGVEEIVN 171 (186)
Q Consensus 145 ~l~~~~p~a~i~~~--Sa~~g~gi~~l~~ 171 (186)
.+++... .+++++ +..+|.|+..+.+
T Consensus 139 ~l~~~~~-~~~~~~~ip~~~~~~~~~~vd 166 (268)
T cd04170 139 ALQEAFG-RPVVPLQLPIGEGDDFKGVVD 166 (268)
T ss_pred HHHHHhC-CCeEEEEecccCCCceeEEEE
Confidence 6655432 234444 3455555544433
No 284
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.92 E-value=0.0017 Score=55.39 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCCCCCccC-C---CCCCCceeEEEEecCCCCCcccccHHHHHHHHHh----h-----------------
Q 029893 95 ADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIGADLAVMERDALR----M----------------- 149 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~~~~-~---~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~----~----------------- 149 (186)
.|+.++++-|.+|.....+ + ..-++.|.+++++|+|++++ +.++.+.+.+.+ .
T Consensus 227 ~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d--dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa 304 (527)
T COG5258 227 VDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPD--DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAA 304 (527)
T ss_pred cceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcH--HHHHHHHHHHHHHHHHhcccceeeeccchhHHhh
Confidence 3666777777666554322 1 12267799999999999987 444443333221 1
Q ss_pred -----CC-CCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 150 -----RD-GGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 150 -----~p-~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+. -+|||.+|+.||+|++-|.+.+....+
T Consensus 305 ~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~ 339 (527)
T COG5258 305 KAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPK 339 (527)
T ss_pred hhhhcCCceEEEEEEecccCccHHHHHHHHHhCCc
Confidence 11 259999999999999888777654433
No 285
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.91 E-value=0.0049 Score=47.36 Aligned_cols=100 Identities=18% Similarity=0.088 Sum_probs=67.3
Q ss_pred CcEEEEecCCCeeEEeee----eecCceEEEEEeCCCCCCCcc----CCCCCCC-ceeEEEEecCCCCCcccccHHHHHH
Q 029893 74 ADLLLCESGGDNLAANFS----RELADYIIYIIDVSGGDKIPR----KGGPGIT-QADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~----~~~ad~~v~VvDa~~~~~~~~----~~~~~~~-~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
.-.=+.-|.| .....|. .+.+...|+++|.+.+..... .+..... .+.+|.+||.||.+. .-.+.+.+
T Consensus 68 ~~v~LfgtPG-q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a--~ppe~i~e 144 (187)
T COG2229 68 TGVHLFGTPG-QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA--LPPEKIRE 144 (187)
T ss_pred ceEEEecCCC-cHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC--CCHHHHHH
Confidence 4555667777 1111121 124678899999988765311 1111112 578999999999987 45566666
Q ss_pred HHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 145 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 145 ~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.+..-+-..|++.++|..++|..+.++.+...
T Consensus 145 ~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 145 ALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 66654446799999999999999999887765
No 286
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.89 E-value=0.0047 Score=48.23 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCeeEEe----eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLAAN----FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~----~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
...+-|++|+|- ...+ ......|..++|++.++...... .....-..|.++|.||+||.....-..
T Consensus 50 ~~~l~ilDt~g~-~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ 128 (196)
T KOG0395|consen 50 VCMLEILDTAGQ-EEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSE 128 (196)
T ss_pred EEEEEEEcCCCc-ccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCH
Confidence 455668899991 1111 12334688899999877532110 011112258999999999987532333
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++..+..+.+ ..+.+++||+...+++++|..+.+....
T Consensus 129 eeg~~la~~~--~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 129 EEGKALARSW--GCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHhc--CCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 3333332332 4579999999999999999988876554
No 287
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.88 E-value=0.0023 Score=53.48 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCeeEEeee-------------eecCceEEEEEeCCCCCCC----cc----CCCCCCCceeEEEEecCCC
Q 029893 73 KADLLLCESGGDNLAANFS-------------RELADYIIYIIDVSGGDKI----PR----KGGPGITQADLLVINKTDL 131 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~-------------~~~ad~~v~VvDa~~~~~~----~~----~~~~~~~~adiivlNK~Dl 131 (186)
.+-+=+|+|.|+ +..|++ -.+++++++++|+++.-.. +. .....+..+.++|+||+|+
T Consensus 214 ~~R~QvIDTPGl-LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 214 YLRIQVIDTPGL-LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred CceEEEecCCcc-cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 446778999994 223321 1246889999999763211 11 1122355679999999999
Q ss_pred CCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 132 ASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.+. +.+++....+.... ....+..|+..+.+++.+.+.+.+.
T Consensus 293 ~~~--e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 293 ADE--EKLEEIEASVLEEG-GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cch--hHHHHHHHHHHhhc-cccccceeeeehhhHHHHHHHHHHH
Confidence 977 66666665554432 2234677888899999888777665
No 288
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0057 Score=46.94 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+-+-+..|-.--.+ .++...+.+|+|+|.++.+.... ..+..-..+-++..||-|+..+ -...
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ 137 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAA 137 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHH
Confidence 55566666666100011 13445789999999987643221 1122123467888999999876 3444
Q ss_pred HHHHHH--HhhCC-CCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDA--LRMRD-GGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l--~~~~p-~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
++.+.+ .++.+ .-.+..++|.+|+|+.+-++++.+.+.
T Consensus 138 ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 138 EITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred HHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 444433 22322 347888999999999999999988764
No 289
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.82 E-value=0.0026 Score=53.09 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=40.1
Q ss_pred ceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 120 ~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.++|+||+|+.+. ++++.+.+. | ..+++||++|.|+++|.+.|-..+.
T Consensus 240 ~p~l~v~NKiD~~~~--e~~~~l~~~-----~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 240 KPALYVVNKIDLPGL--EELERLARK-----P--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeEEEEecccccCH--HHHHHHHhc-----c--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 478999999999986 555544322 2 7899999999999999999887664
No 290
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.75 E-value=0.0042 Score=52.14 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=51.9
Q ss_pred cCceEEEEEeCCCCCCCccCCC-CC-CCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 94 LADYIIYIIDVSGGDKIPRKGG-PG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~~~~-~~-~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
..|+++-|+|+..+........ .. -..+.++|+||.||++. ...+...+.+.+.+ ....+.+|++++.+...+..
T Consensus 34 ~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~--~~~~~W~~~~~~~~-~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 34 SVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPK--EVTKKWKKYFKKEE-GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCH--HHHHHHHHHHHhcC-CCccEEEEeecccCccchHH
Confidence 3689999999988654322111 11 12355999999999987 55555555555544 34567788888888888875
Q ss_pred HHH
Q 029893 172 HIL 174 (186)
Q Consensus 172 ~i~ 174 (186)
.+.
T Consensus 111 ~~~ 113 (322)
T COG1161 111 ALE 113 (322)
T ss_pred HHH
Confidence 444
No 291
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.75 E-value=0.0051 Score=48.12 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=62.1
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
....+-+.+|+|..--. ...+..++.+++++|.++...... .... ..+.+++.||+|+.+. ...
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~i~lv~nK~Dl~~~--~~~ 131 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE--NIPIVLVGNKVDVKDR--QVK 131 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECccCccc--cCC
Confidence 35667788888821000 111235688999999986432110 0111 2366789999998654 222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.......+.. ..+++++||++|.|+++.+.++.+.+.
T Consensus 132 ~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 132 ARQITFHRKK--NLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred HHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 2222223322 357899999999999999998887654
No 292
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.69 E-value=0.002 Score=56.59 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=46.5
Q ss_pred cCceEEEEEeCCCCCCCc----cCCCC-CC-CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccC
Q 029893 94 LADYIIYIIDVSGGDKIP----RKGGP-GI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH 162 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~----~~~~~-~~-~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~ 162 (186)
.+|++|.+|||.++.-.. ..|.. .- .++.++++||+||+++ ++.....++.++.| .++++-||..
T Consensus 174 rSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~--~qr~aWa~YF~~~n--i~~vf~SA~~ 244 (562)
T KOG1424|consen 174 RSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPP--EQRVAWAEYFRQNN--IPVVFFSALA 244 (562)
T ss_pred hcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCH--HHHHHHHHHHHhcC--ceEEEEeccc
Confidence 479999999998864221 12222 22 3688999999999988 66666666666655 7888889876
No 293
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0053 Score=48.20 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=66.0
Q ss_pred hcCCcEEEEecCCCe--eE-EeeeeecCceEEEEEeCCCCCCCc--cCCCC------CCCceeEEEEecCCCCCcccccH
Q 029893 71 LFKADLLLCESGGDN--LA-ANFSRELADYIIYIIDVSGGDKIP--RKGGP------GITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~--l~-~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~------~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.+...|=+|+|-- .+ .+..++.|...++|.|.+...... ..|.. .-....++|.||+||...+.-..
T Consensus 60 ~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~t 139 (222)
T KOG0087|consen 60 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPT 139 (222)
T ss_pred CcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccch
Confidence 456777888999931 11 233457788899999997653321 11111 12457899999999987321111
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
++... ..+.+ .-..++|||+.+.++++.|+.+....
T Consensus 140 e~~k~-~Ae~~-~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 140 EDGKA-FAEKE-GLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred hhhHh-HHHhc-CceEEEecccccccHHHHHHHHHHHH
Confidence 22222 22222 35889999999999999998766533
No 294
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0089 Score=49.54 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=51.4
Q ss_pred ceEEEEEeCCCCCCCccC----CCCCCCce-eEEEEecCCCCCcccccH-HHHHHHHHhh-----CC--CCCEEEEeccC
Q 029893 96 DYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADL-AVMERDALRM-----RD--GGPFIFAQVKH 162 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~~----~~~~~~~a-diivlNK~Dl~~~~~~~~-~~~~~~l~~~-----~p--~a~i~~~Sa~~ 162 (186)
|..|+|+.|.+|...+.. ...|...+ .++++||+|++++ +++ +.++..++.+ +| ..||+.-||+.
T Consensus 100 DgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd--~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 100 DGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD--EELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred CccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc--HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 778999999998765432 34567774 6677999999986 343 3333344433 34 57999999863
Q ss_pred -CCCHHHHHHHHHHHH
Q 029893 163 -GLGVEEIVNHILQAW 177 (186)
Q Consensus 163 -g~gi~~l~~~i~~~~ 177 (186)
.+|-..|.+.|.+++
T Consensus 178 ale~~~~~~~~i~eLm 193 (394)
T COG0050 178 ALEGDAKWEAKIEELM 193 (394)
T ss_pred hhcCCcchHHHHHHHH
Confidence 455544544444433
No 295
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.028 Score=41.66 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=50.3
Q ss_pred ecCceEEEEEeCCCCCCCc--cCC------CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCC
Q 029893 93 ELADYIIYIIDVSGGDKIP--RKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 164 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~--~~~------~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~ 164 (186)
+.+-..+.|.|.+...... ..+ .-.-....+++.||.||.+++....++..+...+ | ..-.++.||+||+
T Consensus 82 rgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faee-n-gl~fle~saktg~ 159 (215)
T KOG0097|consen 82 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-N-GLMFLEASAKTGQ 159 (215)
T ss_pred ccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhh-c-CeEEEEecccccC
Confidence 4566678899987643211 111 1112335788899999987643333444443333 3 4578899999999
Q ss_pred CHHHHH-HHHHHHH
Q 029893 165 GVEEIV-NHILQAW 177 (186)
Q Consensus 165 gi~~l~-~~i~~~~ 177 (186)
++++-| +...+.+
T Consensus 160 nvedafle~akkiy 173 (215)
T KOG0097|consen 160 NVEDAFLETAKKIY 173 (215)
T ss_pred cHHHHHHHHHHHHH
Confidence 998765 4444443
No 296
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.57 E-value=0.0091 Score=44.81 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHHHHHhcC-CcEEEEEcccC-Cc-----hhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhh-c
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF-TK-----EDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNL-F 72 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g-~~-----iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~-~ 72 (186)
.++++.++.+ +|+|+|.++.+ .. -|..++.+.|. ..+.+.+|+ ||... +. . ....+.++... .
T Consensus 17 ~~l~~~l~~~G~~V~viK~~~~~~~~d~~~~D~~~~~~aga----~~v~~~~~~~~~~~~-~~--~-~~~~l~~ll~~~~ 88 (155)
T TIGR00176 17 ERLVKALKARGYRVATIKHDHHDFDIDKNGKDSYRHREAGA----DQVIVASSRRYAFMH-ET--Q-EERDLEALLDRLP 88 (155)
T ss_pred HHHHHHHHhcCCeEEEEecccccccCCCccccHHHHHhCCC----CEEEEecCCeEEEEE-ec--C-CCcCHHHHHhhCC
Confidence 4677777764 89999999876 43 45556766654 456677888 76431 10 0 11234444333 2
Q ss_pred CCcEEEEecCC
Q 029893 73 KADLLLCESGG 83 (186)
Q Consensus 73 ~~D~iiIEtsG 83 (186)
.+|+||||.-+
T Consensus 89 ~~D~vlVEG~k 99 (155)
T TIGR00176 89 DLDIILVEGFK 99 (155)
T ss_pred CCCEEEECCCC
Confidence 58999999988
No 297
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.56 E-value=0.0034 Score=53.67 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=42.6
Q ss_pred cCceEEEEEeCCCCCCCccC----CC--CCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCC
Q 029893 94 LADYIIYIIDVSGGDKIPRK----GG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG 153 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~~----~~--~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a 153 (186)
.+|+++-|+||..++..... .. .+=.+--|+|+||+||++. +.++....+++..+|..
T Consensus 146 ~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr--Ev~e~Wl~YLr~~~ptv 209 (435)
T KOG2484|consen 146 ASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR--EVVEKWLVYLRREGPTV 209 (435)
T ss_pred hhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH--HHHHHHHHHHHhhCCcc
Confidence 46999999999887643211 11 1112457999999999998 78888888898888753
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.54 E-value=0.014 Score=50.78 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=74.5
Q ss_pred HHHHHHhc-CCcEEEEEcccC-C-chhHHHH--HhcCCCCcCceEeccCCCcccCCcccccccC-cchhHhhhhhcCCcE
Q 029893 3 ALCKFLRD-KYSLAAVTNDIF-T-KEDGEFL--MRNGALPEERIRAVETGGCPHAAIREDISIN-LGPLEELSNLFKADL 76 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g-~-~iD~~~i--~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~-~~~l~~l~~~~~~D~ 76 (186)
+++.+++. ++|+++|.-|.. . .++.... .+.++ ++....++. |.... .+++..+ ...++|+
T Consensus 119 KLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~v----p~~~~~~~~--------dp~~i~~~~l~~~-~~~~~Dv 185 (429)
T TIGR01425 119 KLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARI----PFYGSYTES--------DPVKIASEGVEKF-KKENFDI 185 (429)
T ss_pred HHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCC----eEEeecCCC--------CHHHHHHHHHHHH-HhCCCCE
Confidence 56666665 489999998876 3 3333211 11122 233322211 11110 1344433 2458999
Q ss_pred EEEecCCCeeEE-e--------eeeecCceEEEEEeCCCCCCCc---cCCCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 77 LLCESGGDNLAA-N--------FSRELADYIIYIIDVSGGDKIP---RKGGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 77 iiIEtsG~~l~~-~--------~~~~~ad~~v~VvDa~~~~~~~---~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
|||+|+|-.-.. . ......+-+++|+|++.+.... ..+.. .-..+-+++||.|........+ .
T Consensus 186 ViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~-~~~~~g~IlTKlD~~argG~aL----s 260 (429)
T TIGR01425 186 IIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD-SVDVGSVIITKLDGHAKGGGAL----S 260 (429)
T ss_pred EEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh-ccCCcEEEEECccCCCCccHHh----h
Confidence 999999931100 0 0111236689999998774321 11211 1235889999999865421122 1
Q ss_pred HHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 145 DALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 145 ~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
..... ..||.+++ +|++++++
T Consensus 261 ~~~~t--~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 261 AVAAT--KSPIIFIG--TGEHIDDF 281 (429)
T ss_pred hHHHH--CCCeEEEc--CCCChhhc
Confidence 11111 34777666 56777665
No 299
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.52 E-value=0.0048 Score=50.42 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=41.2
Q ss_pred hcCCcEEEEecCCCe-eEE-e-eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~~-~-~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~ 134 (186)
..+..+.|++|+|.. ... . ..+..+|.+++|+|++.+..... .+......+-++++||+|+...
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 347889999999931 000 0 11234799999999987643211 1112235678999999998765
No 300
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.0074 Score=45.60 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=47.8
Q ss_pred eEEEEEeCCCCCCCc--cCCCCC------CCceeEEE-EecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 97 YIIYIIDVSGGDKIP--RKGGPG------ITQADLLV-INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 97 ~~v~VvDa~~~~~~~--~~~~~~------~~~adiiv-lNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
..++++|.++..... ..+..| -+.|||++ .||+||.+.+....++..+...+. ..|+|++||-||.+++
T Consensus 93 GFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky--glPYfETSA~tg~Nv~ 170 (219)
T KOG0081|consen 93 GFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY--GLPYFETSACTGTNVE 170 (219)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh--CCCeeeeccccCcCHH
Confidence 457888887643321 122222 24466654 799999876322222222222222 5799999999999997
Q ss_pred HHHH----HHHHHHHHh
Q 029893 168 EIVN----HILQAWEAS 180 (186)
Q Consensus 168 ~l~~----~i~~~~~~~ 180 (186)
+-.+ .+.+..+.+
T Consensus 171 kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 171 KAVELLLDLVMKRIEQC 187 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7554 444444444
No 301
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0024 Score=47.73 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=59.6
Q ss_pred CCcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCcc--CCCCC------CCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~~------~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
+...=|-+|+|-. . .....++.|+.+++|.|.+..+...- .+.+. -+.-.++|.||+|+.+.+ +.-++
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr-evp~q 133 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR-EVPQQ 133 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh-hhhHH
Confidence 4455556666610 0 01123456899999999876443210 11111 123478999999998763 12223
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
..+...+. ...-.+++||+..++++.||..+..
T Consensus 134 igeefs~~-qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 134 IGEEFSEA-QDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred HHHHHHHh-hhhhhhhhcccchhhHHHHHHHHHH
Confidence 33333222 2346789999999999999987664
No 302
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.29 E-value=0.0042 Score=53.63 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=40.9
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHH-HHHHHHHHHHHh
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE-IVNHILQAWEAS 180 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~-l~~~i~~~~~~~ 180 (186)
.+|.++|+||+|+.+.. ..+. .+.+. +..+++++||+.+.++++ +.+.+.+++|.+
T Consensus 217 ~KPvI~VlNK~D~~~~~-~~l~----~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 217 SKPMVIAANKADLPPAE-ENIE----RLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred CCCEEEEEEchhcccch-HHHH----HHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 36899999999986431 2222 23333 667899999999999999 777888776654
No 303
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.0083 Score=50.58 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=51.1
Q ss_pred ceEEEEEeCCCCCCCccC----CCCCCCcee-EEEEecCCCCCcccccHHHHHHHHHhhC-------CCCCEEEEecc--
Q 029893 96 DYIIYIIDVSGGDKIPRK----GGPGITQAD-LLVINKTDLASAIGADLAVMERDALRMR-------DGGPFIFAQVK-- 161 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~~----~~~~~~~ad-iivlNK~Dl~~~~~~~~~~~~~~l~~~~-------p~a~i~~~Sa~-- 161 (186)
|..|+||.+++|...+.+ ...|+.... ++.+||.|++++. +.++-++-.+|++. ...||+.-||+
T Consensus 142 DGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~-e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~A 220 (449)
T KOG0460|consen 142 DGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDP-EMLELVEMEIRELLSEFGFDGDNTPVIRGSALCA 220 (449)
T ss_pred CceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCH-HHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhh
Confidence 667999999998765432 345666654 5569999999652 44444444455431 35799998875
Q ss_pred -CCCC-------HHHHHHHHHHHHH
Q 029893 162 -HGLG-------VEEIVNHILQAWE 178 (186)
Q Consensus 162 -~g~g-------i~~l~~~i~~~~~ 178 (186)
.|.. |.+|++.+..+.|
T Consensus 221 Leg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 221 LEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred hcCCCccccHHHHHHHHHHHhccCC
Confidence 3422 4555555555443
No 304
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.18 E-value=0.0095 Score=55.34 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=37.4
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC-C---CCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~-~---~~~~~~adiivlNK~Dl~ 132 (186)
++-+.||+|.|.. .... .....+|.+++|+|+..+...+.. . ......+-++++||+|+.
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 4567899999921 0000 012347999999999887543211 1 111234679999999986
No 305
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.17 E-value=0.0019 Score=51.67 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=38.9
Q ss_pred hcCCcEEEEec-CCCeeEEeee---eecCceEEEEEeCCCCCC----CccCCCCCCC-ceeEEEEecCCCC
Q 029893 71 LFKADLLLCES-GGDNLAANFS---RELADYIIYIIDVSGGDK----IPRKGGPGIT-QADLLVINKTDLA 132 (186)
Q Consensus 71 ~~~~D~iiIEt-sG~~l~~~~~---~~~ad~~v~VvDa~~~~~----~~~~~~~~~~-~adiivlNK~Dl~ 132 (186)
....|+|+++| +|+ ..|. .+.+|.+++|+|++...- ...+...++. ....+|+||+|-.
T Consensus 131 ~~~~e~VivDtEAGi---EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 131 LNRYEVVIVDTEAGI---EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCcEEEEecccch---hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 45799999998 552 2332 245799999999876321 1122334455 5788999999954
No 306
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.16 E-value=0.0087 Score=46.75 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=63.3
Q ss_pred CcEEEEecCCC----eeEEeeeeecCceEEEEEeCCCCCCC---ccCCCCCC-----CceeEEEEecCCCCCcccccH--
Q 029893 74 ADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKI---PRKGGPGI-----TQADLLVINKTDLASAIGADL-- 139 (186)
Q Consensus 74 ~D~iiIEtsG~----~l~~~~~~~~ad~~v~VvDa~~~~~~---~~~~~~~~-----~~adiivlNK~Dl~~~~~~~~-- 139 (186)
...=+=+|+|- ++ .|+++..+|++++.++..+.... ..+|.+.+ ..+.++|.+|.||.++. ..+
T Consensus 53 v~L~LwDTAGqedYDrl-RplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~-~~~~~ 130 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRL-RPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDP-STLEK 130 (198)
T ss_pred EEEeeeecCCCcccccc-cccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCH-HHHHH
Confidence 33445567772 12 36777788999888887665432 22333222 35799999999998541 111
Q ss_pred -----------HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 -----------AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 -----------~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
++.....+++ ....++++||++.+|+.+.|+....+.
T Consensus 131 l~~~~~~~Vt~~~g~~lA~~i-ga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 131 LQRQGLEPVTYEQGLELAKEI-GAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHhccCCcccHHHHHHHHHHh-CcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 1111112222 246899999999999999998665543
No 307
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.019 Score=43.18 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=49.5
Q ss_pred eecCceEEEEEeCCCCCCCcc--CC---CCCC---CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCC
Q 029893 92 RELADYIIYIIDVSGGDKIPR--KG---GPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 163 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~~~~~--~~---~~~~---~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g 163 (186)
++.|-..++|.|+++.+.... .+ .+.+ ....+++.||.||-+++.....+.....++ | ..-.+++||+||
T Consensus 79 YRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqE-n-el~flETSa~TG 156 (214)
T KOG0086|consen 79 YRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-N-ELMFLETSALTG 156 (214)
T ss_pred hccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcc-c-ceeeeeeccccc
Confidence 345677899999988765321 11 1112 235677889999987632222222222222 2 236789999999
Q ss_pred CCHHHHHHHHH
Q 029893 164 LGVEEIVNHIL 174 (186)
Q Consensus 164 ~gi~~l~~~i~ 174 (186)
+++++-|-...
T Consensus 157 eNVEEaFl~c~ 167 (214)
T KOG0086|consen 157 ENVEEAFLKCA 167 (214)
T ss_pred ccHHHHHHHHH
Confidence 99999875444
No 308
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.022 Score=47.84 Aligned_cols=148 Identities=20% Similarity=0.272 Sum_probs=81.7
Q ss_pred HHHHHHHhcC-CcEEEEEcccC--CchhHHHH--HhcCCCCcCceEeccCCCcccCCcccccccC-cchhHhhhhhcCCc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF--TKEDGEFL--MRNGALPEERIRAVETGGCPHAAIREDISIN-LGPLEELSNLFKAD 75 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g--~~iD~~~i--~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~-~~~l~~l~~~~~~D 75 (186)
.+++++|... +++-+-..|=- --++..-+ ++.|+ .++.-..|. |-.+. ++++..- ..+++|
T Consensus 157 aKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv----~vI~~~~G~--------DpAaVafDAi~~A-kar~~D 223 (340)
T COG0552 157 AKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGV----PVISGKEGA--------DPAAVAFDAIQAA-KARGID 223 (340)
T ss_pred HHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCC----eEEccCCCC--------CcHHHHHHHHHHH-HHcCCC
Confidence 4677777765 88888776632 23332222 23344 455433343 22222 2777654 467999
Q ss_pred EEEEecCCCeeE----------------EeeeeecC-ceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCccc
Q 029893 76 LLLCESGGDNLA----------------ANFSRELA-DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 76 ~iiIEtsG~~l~----------------~~~~~~~a-d~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
++||+|+| ++- .+.. ..+ +-+++++|++.|..... +.-...-.=+=++++|.|-... .
T Consensus 224 vvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~-~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAK-G 300 (340)
T COG0552 224 VVLIDTAG-RLHNKKNLMDELKKIVRVIKKDD-PDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAK-G 300 (340)
T ss_pred EEEEeCcc-cccCchhHHHHHHHHHHHhcccc-CCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecccCCC-c
Confidence 99999999 321 1111 112 33677779998864321 1111111137899999994322 2
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 172 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~ 172 (186)
..+-.+ .... ..||.++- -|+++++|.++
T Consensus 301 G~il~I---~~~l--~~PI~fiG--vGE~~~DL~~F 329 (340)
T COG0552 301 GIILSI---AYEL--GIPIKFIG--VGEGYDDLRPF 329 (340)
T ss_pred ceeeeH---HHHh--CCCEEEEe--CCCChhhcccc
Confidence 222222 2223 36899887 59999998653
No 309
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.007 Score=50.39 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.9
Q ss_pred eeEEEEecCCCCCccc--ccHHHHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 121 ADLLVINKTDLASAIG--ADLAVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 121 adiivlNK~Dl~~~~~--~~~~~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
-.+++-||+||+.+.. ++-+++.++++.- ...+||+++||.-+.+++-+.++|.+..|
T Consensus 181 hiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred eEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 4678889999997621 2223344444433 35789999999999999999999998765
No 310
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.77 E-value=0.0097 Score=45.84 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=57.6
Q ss_pred eeecCceEEEEEeCCCCCCCcc--CC-----CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCC
Q 029893 91 SRELADYIIYIIDVSGGDKIPR--KG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG 163 (186)
Q Consensus 91 ~~~~ad~~v~VvDa~~~~~~~~--~~-----~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g 163 (186)
.++.|...|+|+..++...... .+ .+--+.|-++|-||+||+++..-....++...+.++ ...+.+|++..
T Consensus 89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~--~RlyRtSvked 166 (246)
T KOG4252|consen 89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH--KRLYRTSVKED 166 (246)
T ss_pred HhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh--hhhhhhhhhhh
Confidence 4567788888888766432211 11 011235889999999999873222234444445443 47899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 029893 164 LGVEEIVNHILQAWEA 179 (186)
Q Consensus 164 ~gi~~l~~~i~~~~~~ 179 (186)
.|+...|.++.+.+..
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999988765543
No 311
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.027 Score=41.76 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=52.8
Q ss_pred ceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHH--h-hCCCCCEEEEeccCC
Q 029893 96 DYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERDAL--R-MRDGGPFIFAQVKHG 163 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~--~-~~p~a~i~~~Sa~~g 163 (186)
..+|+|+|+...+...+ ..+++-...-+|+.||-|+.++ -..+++...++ . .+..--+.+++|.+|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccc
Confidence 45799999877654221 1122223456778899999877 33444444332 1 122346889999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029893 164 LGVEEIVNHILQAWE 178 (186)
Q Consensus 164 ~gi~~l~~~i~~~~~ 178 (186)
.|+.+=+.|+....+
T Consensus 164 dgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNLK 178 (180)
T ss_pred hhHHHHHHHHHhhcc
Confidence 999999999887653
No 312
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=95.57 E-value=0.05 Score=41.37 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=67.7
Q ss_pred chhHhhhhhcCCcEEEEecCCCe-e-EEe-eeeecCceEEEEEeCCCCCCCc--cCC-------CC-CCCceeEEEEecC
Q 029893 63 GPLEELSNLFKADLLLCESGGDN-L-AAN-FSRELADYIIYIIDVSGGDKIP--RKG-------GP-GITQADLLVINKT 129 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~-l-~~~-~~~~~ad~~v~VvDa~~~~~~~--~~~-------~~-~~~~adiivlNK~ 129 (186)
.-+.++-.......=+=+|+|-. . ..+ ..++.+-.+++|.|.++..... ..+ .. -.+.--.+|..|+
T Consensus 47 arlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKs 126 (213)
T KOG0091|consen 47 ARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKS 126 (213)
T ss_pred HHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 33444432345667778899910 0 001 1234456678999998754321 111 11 1222357889999
Q ss_pred CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
||.+.+.-..++.+...+. -....++|||++|.|+++-+..+.+...
T Consensus 127 DL~SqRqVt~EEaEklAa~--hgM~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 127 DLQSQRQVTAEEAEKLAAS--HGMAFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred chhhhccccHHHHHHHHHh--cCceEEEecccCCCcHHHHHHHHHHHHH
Confidence 9998743333444333333 2468999999999999999988876543
No 313
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=95.47 E-value=0.064 Score=40.38 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCeeE---Ee-eeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLA---AN-FSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~-~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.-.++|-+|.|+.-- -| ..+..+|..|+|.+..+.+..+ +++...-+.+.+++.||.|+.++.....
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 456788899994210 11 1223479999999987764322 2233345668999999999987732233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+....+.++ ...+.++++|.....+-+.|.++...+.
T Consensus 139 d~A~~Wa~r--Ekvkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 139 DVAQIWAKR--EKVKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred HHHHHHHhh--hheeEEEEEeccchhhhhHHHHHHHhcc
Confidence 333333332 2468999999999999999998876443
No 314
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.047 Score=47.31 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeEEe---------eeeecCceEEEEEeCCCCCCC----ccCCCCCCCceeEEEEecC
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLAAN---------FSRELADYIIYIIDVSGGDKI----PRKGGPGITQADLLVINKT 129 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~~~---------~~~~~ad~~v~VvDa~~~~~~----~~~~~~~~~~adiivlNK~ 129 (186)
+++..+.+..++|+|||+|+|-+.... ......+-+++|+|++..... ...|.. ...+-++++|.
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~--~~idglI~TKL 387 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--IHIDGIVFTKF 387 (436)
T ss_pred HHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC--CCCCEEEEEcc
Confidence 455444323479999999999321100 000112557888998654321 111221 23588999999
Q ss_pred CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHH
Q 029893 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~ 168 (186)
|-.... -.+....... ..||.+++ +|+++.+
T Consensus 388 DET~k~----G~iLni~~~~--~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 388 DETASS----GELLKIPAVS--SAPIVLMT--DGQDVKK 418 (436)
T ss_pred cCCCCc----cHHHHHHHHH--CcCEEEEe--CCCCCCc
Confidence 987542 2233333332 35888877 6887754
No 315
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=95.22 E-value=0.2 Score=38.94 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=57.4
Q ss_pred eeecCceEEEEEeCCCCCCCc--c----------CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEE
Q 029893 91 SRELADYIIYIIDVSGGDKIP--R----------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 158 (186)
Q Consensus 91 ~~~~ad~~v~VvDa~~~~~~~--~----------~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~ 158 (186)
.+..++....|+|.++..... . ..+..--.|.+++-||+|.-.....+-.+........|..+..++|
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtet 174 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTET 174 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeee
Confidence 345677788899987753321 0 1111223478999999998765221212334445556788999999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 029893 159 QVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 159 Sa~~g~gi~~l~~~i~~~ 176 (186)
|+|...+++|..+.+.+.
T Consensus 175 s~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 175 SAKENKNIPEAQRELVEK 192 (229)
T ss_pred ccccccChhHHHHHHHHH
Confidence 999999999998877654
No 316
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.19 E-value=0.017 Score=45.08 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=74.3
Q ss_pred HHHHHHhc-CCcEEEEEcccC-CchhHHH---HHhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCcE
Q 029893 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGEF---LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g-~~iD~~~---i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D~ 76 (186)
+++.++.. ++|+++|.-|.. .+--.++ -+..++ ++....+ .+|-...+ +++... ...++|+
T Consensus 20 KLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v----p~~~~~~--------~~~~~~~~~~~l~~~-~~~~~D~ 86 (196)
T PF00448_consen 20 KLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGV----PFYVART--------ESDPAEIAREALEKF-RKKGYDL 86 (196)
T ss_dssp HHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE----EEEESST--------TSCHHHHHHHHHHHH-HHTTSSE
T ss_pred HHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcc----ccchhhc--------chhhHHHHHHHHHHH-hhcCCCE
Confidence 56666654 599999999987 6433232 122233 2333211 11111111 334333 3568999
Q ss_pred EEEecCCCeeEEe--------e-eeecCceEEEEEeCCCCCCCccC---CCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 77 LLCESGGDNLAAN--------F-SRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 77 iiIEtsG~~l~~~--------~-~~~~ad~~v~VvDa~~~~~~~~~---~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
|||+|+|.+-..+ + .....+-+++|+|++.+.+.... +...+ ..+-++++|.|-... .-.+..
T Consensus 87 vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-~~~~lIlTKlDet~~----~G~~l~ 161 (196)
T PF00448_consen 87 VLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-GIDGLILTKLDETAR----LGALLS 161 (196)
T ss_dssp EEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-STCEEEEESTTSSST----THHHHH
T ss_pred EEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-cCceEEEEeecCCCC----ccccee
Confidence 9999999321100 0 00123567899999876432111 10111 136788999998755 233444
Q ss_pred HHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 145 DALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 145 ~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
.+.+. ..|+-++| +|+++++|
T Consensus 162 ~~~~~--~~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 162 LAYES--GLPISYIT--TGQRVDDL 182 (196)
T ss_dssp HHHHH--TSEEEEEE--SSSSTTGE
T ss_pred HHHHh--CCCeEEEE--CCCChhcC
Confidence 44333 35888877 68887554
No 317
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.04 E-value=0.11 Score=44.79 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred cCceEEEEEeCCCCCCCccCCC------CCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 94 LADYIIYIIDVSGGDKIPRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
.+|++|-|+||.++....-.+. +.-.+--+.|+||+||++. -........+.+.+|.... -.|-.+..|-.
T Consensus 213 SSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt--wvt~~Wv~~lSkeyPTiAf-HAsi~nsfGKg 289 (572)
T KOG2423|consen 213 SSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT--WVTAKWVRHLSKEYPTIAF-HASINNSFGKG 289 (572)
T ss_pred ccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH--HHHHHHHHHHhhhCcceee-ehhhcCccchh
Confidence 4699999999988654332211 1123457899999999986 3334444455555664332 23444566777
Q ss_pred HHHHHHHHHHHHhh
Q 029893 168 EIVNHILQAWEAST 181 (186)
Q Consensus 168 ~l~~~i~~~~~~~~ 181 (186)
.|++.+.+...-..
T Consensus 290 alI~llRQf~kLh~ 303 (572)
T KOG2423|consen 290 ALIQLLRQFAKLHS 303 (572)
T ss_pred HHHHHHHHHHhhcc
Confidence 88887776655443
No 318
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.90 E-value=0.061 Score=41.72 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCc---cCCC----CC--CCceeEEEEecCCCCCcccc---
Q 029893 73 KADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIP---RKGG----PG--ITQADLLVINKTDLASAIGA--- 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~----~~--~~~adiivlNK~Dl~~~~~~--- 137 (186)
.++..+++|.|-. . ..+..+..++.+++++|........ ..+. .. -..+-+++.||+|+......
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE 132 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence 5668888999921 0 1122345678889999887632211 1110 11 23688999999999876210
Q ss_pred ---------cHHHHHHHHHhh-CCCCCEEEEecc--CCCCHHHHHHHHHHHHHH
Q 029893 138 ---------DLAVMERDALRM-RDGGPFIFAQVK--HGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 ---------~~~~~~~~l~~~-~p~a~i~~~Sa~--~g~gi~~l~~~i~~~~~~ 179 (186)
............ ......+.+|++ ++.++.+++.........
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 011111111111 112238999999 999999999888776643
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=94.85 E-value=0.11 Score=45.42 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=73.2
Q ss_pred HHHHHHhc--CCcEEEEEcccC-Cc-hhHH--HHHhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCc
Q 029893 3 ALCKFLRD--KYSLAAVTNDIF-TK-EDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (186)
Q Consensus 3 ~~~~~l~~--~~~vaVi~nd~g-~~-iD~~--~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D 75 (186)
+++.++.. ++++++|.-|.- .. ++.- +-.+.++ ++.....+..+ .... +++ ......++|
T Consensus 119 kLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv----~v~~~~~~~dp--------~~i~~~a~-~~a~~~~~D 185 (433)
T PRK10867 119 KLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV----PVFPSGDGQDP--------VDIAKAAL-EEAKENGYD 185 (433)
T ss_pred HHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC----eEEecCCCCCH--------HHHHHHHH-HHHHhcCCC
Confidence 45665553 589999999976 32 3222 1223333 34443222222 1111 223 233356899
Q ss_pred EEEEecCCCe-eEEee--------eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 76 LLLCESGGDN-LAANF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 76 ~iiIEtsG~~-l~~~~--------~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
+|||+|+|-. ..... .....+-+++|+|+..+.+... .+...+. -+-+|+||.|-.... .. +.
T Consensus 186 vVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~-i~giIlTKlD~~~rg-G~---al 260 (433)
T PRK10867 186 VVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALG-LTGVILTKLDGDARG-GA---AL 260 (433)
T ss_pred EEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCC-CCEEEEeCccCcccc-cH---HH
Confidence 9999999921 10000 0001255799999876533211 1111121 357888999965431 11 22
Q ss_pred HHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 144 RDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 144 ~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
...... ..||.+++ +|+++++|
T Consensus 261 si~~~~--~~PI~fig--~Ge~v~DL 282 (433)
T PRK10867 261 SIRAVT--GKPIKFIG--TGEKLDDL 282 (433)
T ss_pred HHHHHH--CcCEEEEe--CCCccccC
Confidence 222222 35888777 47766655
No 320
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.78 E-value=0.024 Score=53.51 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=36.5
Q ss_pred EEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCC
Q 029893 76 LLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (186)
Q Consensus 76 ~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~ 132 (186)
+=||+|+|-. .... .....+|..++|+|+.+|...+.. .......+-++++||+|+.
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 4589999920 0000 112357999999999988654321 1122345789999999998
No 321
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.60 E-value=0.13 Score=38.63 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHhc-CCcEEEEEcccC-CchhHHHHH---hcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCcE
Q 029893 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGEFLM---RNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g-~~iD~~~i~---~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D~ 76 (186)
+++..+.+ ++++++|-.|+. .....++.. +.+. ++..... -. |....+ +.+... ...++|+
T Consensus 19 ~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~----~~~~~~~--~~------~~~~~~~~~~~~~-~~~~~d~ 85 (173)
T cd03115 19 KLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGV----PVFEEGE--GK------DPVSIAKRAIEHA-REENFDV 85 (173)
T ss_pred HHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCe----EEEecCC--CC------CHHHHHHHHHHHH-HhCCCCE
Confidence 44555554 489999999987 333333321 1121 2222111 11 112111 223332 2468999
Q ss_pred EEEecCCCe-eEEee--------eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCc
Q 029893 77 LLCESGGDN-LAANF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 77 iiIEtsG~~-l~~~~--------~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~ 134 (186)
|||+|.|.. ..... .....+.+++|+|+....+... .+..... .+-+++||.|....
T Consensus 86 viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 86 VIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALG-ITGVILTKLDGDAR 154 (173)
T ss_pred EEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCC-CCEEEEECCcCCCC
Confidence 999999932 10010 0112577899999865432211 1112223 47889999998765
No 322
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.50 E-value=0.12 Score=39.84 Aligned_cols=104 Identities=9% Similarity=0.075 Sum_probs=61.9
Q ss_pred cCCcEEEEecCCCeeE-E-e------------eeeecCceEEEEEeCCCCCCCcc--------CCCCCCCceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLA-A-N------------FSRELADYIIYIIDVSGGDKIPR--------KGGPGITQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-~-~------------~~~~~ad~~v~VvDa~~~~~~~~--------~~~~~~~~adiivlNK~ 129 (186)
.+..+.+|+|+|..-. . . ......|++++|+|+.+...... .+...+-..-++|+||+
T Consensus 47 ~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 47 DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 4668999999995210 0 0 01224588999999876321111 11222234678999999
Q ss_pred CCCCcccccHHH--------HHHHHHhhCCCCCEEEEe-----ccCCCCHHHHHHHHHHHHHH
Q 029893 130 DLASAIGADLAV--------MERDALRMRDGGPFIFAQ-----VKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 130 Dl~~~~~~~~~~--------~~~~l~~~~p~a~i~~~S-----a~~g~gi~~l~~~i~~~~~~ 179 (186)
|.... ..+++ +...+++-. ..++..+ +..+.++++|++.+.+..++
T Consensus 127 d~l~~--~~~~~~~~~~~~~l~~l~~~c~--~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 127 DDLEG--GTLEDYLENSCEALKRLLEKCG--GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred cccCC--CcHHHHHHhccHHHHHHHHHhC--CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 98765 22222 222333322 2343443 56789999999999998886
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.49 E-value=0.21 Score=43.09 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred HHHHHHh-cCCcEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEEEEe
Q 029893 3 ALCKFLR-DKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (186)
Q Consensus 3 ~~~~~l~-~~~~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIE 80 (186)
+++..+. .++++++|.-|.. ++--.++-...... .-++... + |-....+++..+....++|+|||+
T Consensus 225 kLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l-gvpv~~~------~-----dp~dL~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 225 KLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL-DVELIVA------T-----SPAELEEAVQYMTYVNCVDHILID 292 (407)
T ss_pred HHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC-CCCEEec------C-----CHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4455454 3589999999977 43221222111110 0012211 1 111112455544323579999999
Q ss_pred cCCCeeEEe--------e-eeecCceEEEEEeCCCCCCCccCCCCCC--CceeEEEEecCCCCCcccccHHHHHHHHHhh
Q 029893 81 SGGDNLAAN--------F-SRELADYIIYIIDVSGGDKIPRKGGPGI--TQADLLVINKTDLASAIGADLAVMERDALRM 149 (186)
Q Consensus 81 tsG~~l~~~--------~-~~~~ad~~v~VvDa~~~~~~~~~~~~~~--~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~ 149 (186)
|+|-.-... + .....+.+++|+++.............+ -..+-+++||.|-.... -.+.......
T Consensus 293 TAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~~----G~~Lsv~~~t 368 (407)
T PRK12726 293 TVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRI----GDLYTVMQET 368 (407)
T ss_pred CCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCCc----cHHHHHHHHH
Confidence 999311000 0 0001255667777644321111111111 12578999999976542 2233333332
Q ss_pred CCCCCEEEEeccCCCCHHH
Q 029893 150 RDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 150 ~p~a~i~~~Sa~~g~gi~~ 168 (186)
..|+.++| +|+++.+
T Consensus 369 --glPIsylt--~GQ~Vpd 383 (407)
T PRK12726 369 --NLPVLYMT--DGQNITE 383 (407)
T ss_pred --CCCEEEEe--cCCCCCc
Confidence 35888887 6888875
No 324
>PTZ00416 elongation factor 2; Provisional
Probab=94.47 E-value=0.042 Score=51.88 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=39.0
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~ 132 (186)
+.-+.||+|+|.. .... .....+|.+++|+|+..+...+.. .......+-++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 4557899999931 0000 122457999999999987554321 1112345889999999997
No 325
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=94.29 E-value=0.027 Score=43.92 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=38.7
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecC-ceEEEEEeCCCCCC-Ccc--CC-------CC--CCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELA-DYIIYIIDVSGGDK-IPR--KG-------GP--GITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~a-d~~v~VvDa~~~~~-~~~--~~-------~~--~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.+++++|-. +.. ...+..+ +.+|+|+|+..... ... .+ .. .-..+.+++.||+|+...
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 35678999999931 111 1112345 89999999988621 110 00 00 124588999999999765
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.22 E-value=0.13 Score=45.05 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=49.8
Q ss_pred CCcEEEEecCCCeeEE-e-------e-eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA-N-------F-SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~-~-------~-~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
..|+|||+|+|-.-.. . + .....|.+++|+|++.+.+... .+...+ ..+-+|+||.|-.... -
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l-~i~gvIlTKlD~~a~~----G 249 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAV-GIGGIIITKLDGTAKG----G 249 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcC-CCCEEEEecccCCCcc----c
Confidence 4699999999921100 0 0 0112477899999987643211 111111 1367899999975442 2
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
.+....... ..||.+++ +|+.+++|
T Consensus 250 ~~ls~~~~~--~~Pi~fig--~Ge~v~Dl 274 (437)
T PRK00771 250 GALSAVAET--GAPIKFIG--TGEKIDDL 274 (437)
T ss_pred HHHHHHHHH--CcCEEEEe--cCCCcccC
Confidence 222222222 35888887 57777665
No 327
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=0.067 Score=49.43 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=41.6
Q ss_pred CcEEEEecCCCeeEEee----eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 74 ADLLLCESGGDNLAANF----SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~----~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
+.+=||+|+| .+.-+. +.+..|..|+|+|+.+|-..+.. .......+-++++||+|.+..
T Consensus 76 ~~iNlIDTPG-HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 76 YRINLIDTPG-HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred eEEEEeCCCC-ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc
Confidence 7778999999 432221 12235999999999998654432 222345589999999999875
No 328
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.064 Score=48.92 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=51.9
Q ss_pred cEEEEecCCCeeEEee--ee----ecCceEEEEEeCCCCCCCccC-----CCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 75 DLLLCESGGDNLAANF--SR----ELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 75 D~iiIEtsG~~l~~~~--~~----~~ad~~v~VvDa~~~~~~~~~-----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
|.++|+..|+.+.... ++ ..+|++|+|+.+.+......+ .... +.-.+|+.||||.....++..+.+.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhhhcccHHHHHHHH
Confidence 8899999996543221 11 247999999988764432111 1111 2235677889998755334445555
Q ss_pred HHHHhhCC------CCCEEEEecc
Q 029893 144 RDALRMRD------GGPFIFAQVK 161 (186)
Q Consensus 144 ~~l~~~~p------~a~i~~~Sa~ 161 (186)
.+++++.| .-.|+++||+
T Consensus 286 ~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 286 KQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHhcCcccHhhhcCeeEEEecc
Confidence 55555543 2388999954
No 329
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.76 E-value=0.57 Score=40.87 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=80.3
Q ss_pred HHHHHHHhcC-CcEEEEEcccC--CchhHHHH--HhcCCCCcCceEeccCCCcc-cCCcccccccCcchhHhhhhhcCCc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF--TKEDGEFL--MRNGALPEERIRAVETGGCP-HAAIREDISINLGPLEELSNLFKAD 75 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g--~~iD~~~i--~~~~~~~~~~~~~l~~Gccc-~l~~r~d~~~~~~~l~~l~~~~~~D 75 (186)
.+|+++|+++ +|++++.-|.. --+|.... .+.++ ++....++--+ .. .-.++... ....+|
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~I--------ak~al~~a-k~~~~D 184 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEI--------AKAALEKA-KEEGYD 184 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHH--------HHHHHHHH-HHcCCC
Confidence 3678888875 99999999987 35664432 33344 45554333222 11 01455443 356899
Q ss_pred EEEEecCCCeeE--Eee-----ee---ecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHHHH
Q 029893 76 LLLCESGGDNLA--ANF-----SR---ELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 76 ~iiIEtsG~~l~--~~~-----~~---~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
+|||+|+| ++. ... .+ -.-|=+++|+|+..|.+... .|.+.+.. .=++++|.|--......+
T Consensus 185 vvIvDTAG-Rl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-tGvIlTKlDGdaRGGaAL--- 259 (451)
T COG0541 185 VVIVDTAG-RLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-TGVILTKLDGDARGGAAL--- 259 (451)
T ss_pred EEEEeCCC-cccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-ceEEEEcccCCCcchHHH---
Confidence 99999999 332 111 00 01256899999998865321 12222222 346899999643311111
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
. ++.. -..||-++. +|+.+++|
T Consensus 260 -S-~~~~-tg~PIkFiG--tGEki~dL 281 (451)
T COG0541 260 -S-ARAI-TGKPIKFIG--TGEKIDDL 281 (451)
T ss_pred -h-hHHH-HCCCeEEEe--cCCCcccC
Confidence 1 1222 246787776 56655543
No 330
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=0.35 Score=43.80 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=44.4
Q ss_pred cCCcEEEEecCCCeeEEeeeeecC----ceEEEEEeCCCCCCCccC-CCCC---CCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDNLAANFSRELA----DYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~~~~a----d~~v~VvDa~~~~~~~~~-~~~~---~~~adiivlNK~Dl~~~ 134 (186)
+.+-.-+|+|+| .+.-++..+.| |..|+|+|+..|-+.+.. .-.| ...|-+..+||.|.+..
T Consensus 102 ~~~~iNiIDTPG-HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 102 RDYRINIIDTPG-HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGA 171 (721)
T ss_pred ccceeEEecCCC-ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCC
Confidence 367889999999 55455544433 788999999888654432 2223 34589999999999987
No 331
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=93.32 E-value=0.22 Score=42.54 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=48.1
Q ss_pred CHHHHHHHhcC-CcEEEEEcccC-C-----chhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhh--
Q 029893 1 MLALCKFLRDK-YSLAAVTNDIF-T-----KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-- 71 (186)
Q Consensus 1 ~~~~~~~l~~~-~~vaVi~nd~g-~-----~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~-- 71 (186)
+.++++.|+++ .|+|||..|-- . +-|..++++.|. ..+.+.++..|++..+.+-.. ..+.++...
T Consensus 222 ~~~l~~~l~~~g~~v~~iKh~~h~~~~d~~g~Ds~r~~~aGa----~~v~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 295 (366)
T PRK14489 222 LEKLIPELIARGYRIGLIKHSHHRVDIDKPGKDSHRLRAAGA----NPTMIVCPERWALMRETPEEA--VPFKVLIATFD 295 (366)
T ss_pred HHHHHHHHHHcCCEEEEEEECCcccCCCCCCChhHHHHhCCC----ceEEEEcCCeEEEEEeCCCCC--cCHHHHHHhcC
Confidence 36788889875 99999997644 3 358999998887 456665666565421111110 123333322
Q ss_pred -cCCcEEEEecCC
Q 029893 72 -FKADLLLCESGG 83 (186)
Q Consensus 72 -~~~D~iiIEtsG 83 (186)
.+.|+||||.--
T Consensus 296 ~~~~D~vlvEG~k 308 (366)
T PRK14489 296 PEEVDLILVEGFK 308 (366)
T ss_pred CcCCCEEEEcccc
Confidence 368999999643
No 332
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=93.20 E-value=0.38 Score=38.54 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=45.5
Q ss_pred HHHHHHHhcC-CcEEEEEc---ccC-CchhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcE
Q 029893 2 LALCKFLRDK-YSLAAVTN---DIF-TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL 76 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~n---d~g-~~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~ 76 (186)
.+++++|+.+ +|+|+|-. ++- .+-|..++++.|. .++.+.++..+.+ ... .. .+.++....++|+
T Consensus 19 ~~l~~~L~~~G~~V~viK~~~~~~d~~~~Dt~r~~~aGA----~~v~~~~~~~~~~-~~~--~~---~l~~ll~~l~~Dl 88 (229)
T PRK14494 19 EKILKNLKERGYRVATAKHTHHEFDKPDTDTYRFKKAGA----EVVVVSTDETAAF-LYD--RM---DLNEILSLLDADF 88 (229)
T ss_pred HHHHHHHHhCCCeEEEEEecccCCCCCCchHHHHHHcCC----cEEEEecCCeEEE-Eec--CC---CHHHHHhhcCCCE
Confidence 5678888864 99999964 222 3578999988876 4566655554543 111 12 2333333337899
Q ss_pred EEEecCC
Q 029893 77 LLCESGG 83 (186)
Q Consensus 77 iiIEtsG 83 (186)
||||.-.
T Consensus 89 vlVEGfk 95 (229)
T PRK14494 89 LLIEGFK 95 (229)
T ss_pred EEEeCCC
Confidence 9999444
No 333
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.18 E-value=0.08 Score=43.42 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=54.8
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeEE-e--------eeeecCceEEEEEeCCCCCC-C---ccCCCCCCCceeEEEEecC
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLAA-N--------FSRELADYIIYIIDVSGGDK-I---PRKGGPGITQADLLVINKT 129 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~~-~--------~~~~~ad~~v~VvDa~~~~~-~---~~~~~~~~~~adiivlNK~ 129 (186)
+++..+.+..++|+|||+|.|-+-.. . ......+.+++|+|++.... . ...|.. -..+-++++|.
T Consensus 144 ~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~--~~~~~~I~TKl 221 (270)
T PRK06731 144 RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--IHIDGIVFTKF 221 (270)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC--CCCCEEEEEee
Confidence 44555533357999999999932100 0 00111256789999875432 1 112222 23588999999
Q ss_pred CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHH
Q 029893 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~ 168 (186)
|-..... .+....... ..||.+++ +|+++.+
T Consensus 222 Det~~~G----~~l~~~~~~--~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 222 DETASSG----ELLKIPAVS--SAPIVLMT--DGQDVKK 252 (270)
T ss_pred cCCCCcc----HHHHHHHHH--CcCEEEEe--CCCCCCc
Confidence 9876522 233333332 35888887 6888763
No 334
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=92.93 E-value=0.086 Score=49.01 Aligned_cols=63 Identities=16% Similarity=0.018 Sum_probs=40.2
Q ss_pred hcCCcEEEEecCCCee-EE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCC
Q 029893 71 LFKADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l-~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~ 133 (186)
..++++.|++|+|..- .. ......+|.+++|+|+..+...... .......+.++++||+|...
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 3578899999999310 00 0123457999999999886433211 11122346689999999864
No 335
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.87 E-value=0.58 Score=40.93 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=74.0
Q ss_pred HHHHHHh--cCCcEEEEEcccC-CchhHHH---HHhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCc
Q 029893 3 ALCKFLR--DKYSLAAVTNDIF-TKEDGEF---LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (186)
Q Consensus 3 ~~~~~l~--~~~~vaVi~nd~g-~~iD~~~---i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D 75 (186)
+++.++. .++|+++|--|.. ...-.++ -.+.++ ++....++.++. ... +++.. ....++|
T Consensus 118 kLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv----p~~~~~~~~~P~--------~i~~~al~~-~~~~~~D 184 (428)
T TIGR00959 118 KLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV----PVFALGKGQSPV--------EIARRALEY-AKENGFD 184 (428)
T ss_pred HHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC----ceEecCCCCCHH--------HHHHHHHHH-HHhcCCC
Confidence 5666664 3589999999976 4321122 122333 334432222221 111 23333 2356899
Q ss_pred EEEEecCCCeeEEe--------e-eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 76 LLLCESGGDNLAAN--------F-SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 76 ~iiIEtsG~~l~~~--------~-~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
+|||+|+|..-... + .....+-+++|+|+..+.+... .+...+. -+=+|+||.|-.... .. +.
T Consensus 185 vVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~-i~giIlTKlD~~~~~-G~---~l 259 (428)
T TIGR00959 185 VVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG-LTGVVLTKLDGDARG-GA---AL 259 (428)
T ss_pred EEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC-CCEEEEeCccCcccc-cH---HH
Confidence 99999999311000 0 0011356799999986543211 1111222 367789999965431 11 22
Q ss_pred HHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 144 RDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 144 ~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
...... ..||.+++ +|+.+++|
T Consensus 260 si~~~~--~~PI~fi~--~Ge~i~dl 281 (428)
T TIGR00959 260 SVRSVT--GKPIKFIG--VGEKIDDL 281 (428)
T ss_pred HHHHHH--CcCEEEEe--CCCChhhC
Confidence 222222 35787776 46766655
No 336
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=92.84 E-value=0.17 Score=44.82 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=58.0
Q ss_pred CcEEEEecCCCeeEEeee----------eecCc---eEEEEEeCCCC--CCC--ccC-----CCCCCCceeEEEEecCCC
Q 029893 74 ADLLLCESGGDNLAANFS----------RELAD---YIIYIIDVSGG--DKI--PRK-----GGPGITQADLLVINKTDL 131 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~----------~~~ad---~~v~VvDa~~~--~~~--~~~-----~~~~~~~adiivlNK~Dl 131 (186)
.-|-+|+|.|+ +..|.. ..+|| .+++++|.++- -.. +.+ .+....++-|+|+||+|+
T Consensus 215 lrwQViDTPGI-LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 215 LRWQVIDTPGI-LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred eeeeecCCccc-cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 35778999994 222221 11333 47899998752 211 111 122245689999999999
Q ss_pred CCcccccHH----HHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 132 ASAIGADLA----VMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 132 ~~~~~~~~~----~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
... +.+. ++.+.+... +..+|+.+|..+.+|+.++..
T Consensus 294 m~~--edL~~~~~~ll~~~~~~-~~v~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 294 MRP--EDLDQKNQELLQTIIDD-GNVKVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred cCc--cccCHHHHHHHHHHHhc-cCceEEEecccchhceeeHHH
Confidence 876 4443 333444332 347999999999999987654
No 337
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=92.71 E-value=0.34 Score=40.98 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=44.0
Q ss_pred CCceeEEEEecCCCCCc-------ccccHHHHHHHHHhh--CCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 118 ITQADLLVINKTDLASA-------IGADLAVMERDALRM--RDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 118 ~~~adiivlNK~Dl~~~-------~~~~~~~~~~~l~~~--~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
+..+.++|++|+|+++- +.+.++.+...+|+. .-++..++||+|..+|++-|..+|...
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 56789999999998532 123444555566653 246899999999999999999998754
No 338
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.49 E-value=0.31 Score=41.85 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=50.0
Q ss_pred hcCCcEEEEecCCCeeEEe--------e-eeecCceEEEEEeCCCCCCCc----cCCCCC-------CCceeEEEEecCC
Q 029893 71 LFKADLLLCESGGDNLAAN--------F-SRELADYIIYIIDVSGGDKIP----RKGGPG-------ITQADLLVINKTD 130 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~--------~-~~~~ad~~v~VvDa~~~~~~~----~~~~~~-------~~~adiivlNK~D 130 (186)
..++|+|||+|.|..-... + ......-.++|++++.+.... ..|... +...+-++++|.|
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 3578999999999421111 0 011123468899998764321 112111 1123678899999
Q ss_pred CCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHH
Q 029893 131 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~ 168 (186)
-.... -.+...+... ..|+.+++ +|+++.+
T Consensus 293 Et~~~----G~~l~~~~~~--~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 293 EASNL----GGVLDTVIRY--KLPVHYVS--TGQKVPE 322 (374)
T ss_pred cCCCc----cHHHHHHHHH--CcCeEEEe--cCCCCCc
Confidence 77542 2333333322 35787777 6777754
No 339
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=0.08 Score=45.52 Aligned_cols=145 Identities=19% Similarity=0.264 Sum_probs=76.2
Q ss_pred HHHHHHHhcC-CcEEEEEcccC--CchhHHHHHh--cCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMR--NGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g--~~iD~~~i~~--~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D 75 (186)
.+++.+++++ +|++.|..|-- --+|...... .++ | ++- ++. ..|-.... +.+... .+.+||
T Consensus 119 ~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~i-P---~yg--syt------e~dpv~ia~egv~~f-Kke~fd 185 (483)
T KOG0780|consen 119 TKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARV-P---FYG--SYT------EADPVKIASEGVDRF-KKENFD 185 (483)
T ss_pred HHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCC-e---eEe--ccc------ccchHHHHHHHHHHH-HhcCCc
Confidence 3677778765 99999998855 3566544322 122 1 221 111 00111101 333332 356999
Q ss_pred EEEEecCCCeeEEe---ee----ee---cCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHHHH
Q 029893 76 LLLCESGGDNLAAN---FS----RE---LADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 76 ~iiIEtsG~~l~~~---~~----~~---~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
+||++||| +.-.. |. .. .-|-+|+|+|++-|..... .+...+.. --++++|.|--......+..+
T Consensus 186 vIIvDTSG-Rh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-g~vIlTKlDGhakGGgAlSaV 263 (483)
T KOG0780|consen 186 VIIVDTSG-RHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-GAVILTKLDGHAKGGGALSAV 263 (483)
T ss_pred EEEEeCCC-chhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-ceEEEEecccCCCCCceeeeh
Confidence 99999999 32111 10 00 1277899999988754211 12221222 246789999653322222222
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
. . ...||+++- ||+++++|
T Consensus 264 a----a--TksPIiFIG--tGEhmdDl 282 (483)
T KOG0780|consen 264 A----A--TKSPIIFIG--TGEHMDDL 282 (483)
T ss_pred h----h--hCCCEEEEe--cCcccccc
Confidence 1 1 234787776 67877766
No 340
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=0.26 Score=42.37 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=65.0
Q ss_pred hHhhhhhcCCcEEEEecCCCe--eEEee-ee--ecCceEEEEEeCCCCCCCcc-CC---CCCCCceeEEEEecCCCCCcc
Q 029893 65 LEELSNLFKADLLLCESGGDN--LAANF-SR--ELADYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAI 135 (186)
Q Consensus 65 l~~l~~~~~~D~iiIEtsG~~--l~~~~-~~--~~ad~~v~VvDa~~~~~~~~-~~---~~~~~~adiivlNK~Dl~~~~ 135 (186)
.+++.++...=+-||+-+|-. +..+. .. .--|+..+|+.|..|-..-. .+ ..-+..|-+++++|+|+.+.
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~- 318 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR- 318 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc-
Confidence 344444445556778888821 11111 00 01267788888877643321 11 22356689999999999987
Q ss_pred cccHHHHHHHHHhh---------------------------CC-CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 136 GADLAVMERDALRM---------------------------RD-GGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 136 ~~~~~~~~~~l~~~---------------------------~p-~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+++..+.+..+ .+ -.|||.+|..+|+|+.-+..++.-..|.
T Consensus 319 -~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~ 389 (591)
T KOG1143|consen 319 -QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPA 389 (591)
T ss_pred -hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCc
Confidence 3333322222110 11 2599999999999998776665544443
No 341
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=92.28 E-value=0.041 Score=50.18 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=38.8
Q ss_pred CCcEEEEecCC-CeeEE--eeeeecCceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGG-DNLAA--NFSRELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG-~~l~~--~~~~~~ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~ 132 (186)
.+=.=|++|+| ++... +...+.+|.+|+++|+.+|-... .++..|-..|.++|+||+|++
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 33344677777 11111 12234579999999999986542 234445567999999999964
No 342
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=92.22 E-value=0.13 Score=38.87 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=42.7
Q ss_pred hcCCcEEEEecCCCeeEEe-e-eeecCceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 71 LFKADLLLCESGGDNLAAN-F-SRELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~-~-~~~~ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
..++|+|||+|.|. .... . ....+|.+++++.+....... .+.......+..+|+||+|.... ..+.+.+
T Consensus 90 ~~~~d~viiDtpp~-~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~---~~~~~~~ 165 (179)
T cd03110 90 AEGAELIIIDGPPG-IGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE---IAEEIED 165 (179)
T ss_pred hcCCCEEEEECcCC-CcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc---hHHHHHH
Confidence 36899999999972 2111 1 123579999999876542110 01111123345799999997543 2334455
Q ss_pred HHHhh
Q 029893 145 DALRM 149 (186)
Q Consensus 145 ~l~~~ 149 (186)
.+++.
T Consensus 166 ~~~~~ 170 (179)
T cd03110 166 YCEEE 170 (179)
T ss_pred HHHHc
Confidence 55543
No 343
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=0.28 Score=38.93 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCCCCCccC-----C-----C--CCCCceeEEEEecCCCCCcccccH--HHHHHHHHhh----C------
Q 029893 95 ADYIIYIIDVSGGDKIPRK-----G-----G--PGITQADLLVINKTDLASAIGADL--AVMERDALRM----R------ 150 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~~~~-----~-----~--~~~~~adiivlNK~Dl~~~~~~~~--~~~~~~l~~~----~------ 150 (186)
+-.+|+|||+......... | . ..-..+.+|..||.|+..+..++. +.+++++..+ +
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~ 188 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS 188 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4568999998775432111 0 0 112236788899999987632211 1222222111 0
Q ss_pred ------------------------CCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 151 ------------------------DGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 151 ------------------------p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
....+.+.|+++| ++++|-+|+.++
T Consensus 189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1124677888887 899999999875
No 344
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=92.18 E-value=0.16 Score=39.70 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc--cCC-------------------------CCCCCcee
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP--RKG-------------------------GPGITQAD 122 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~--~~~-------------------------~~~~~~ad 122 (186)
.+.+-|-+|+|..- ..+..+..+|.+++|+|.++..... ..| ...-..|.
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 132 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPL 132 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceE
Confidence 45677889999310 0122345689999999998764211 000 00123588
Q ss_pred EEEEecCCCCCcccccHHHH---HHHHHhhCCCCCEEEEeccCCC
Q 029893 123 LLVINKTDLASAIGADLAVM---ERDALRMRDGGPFIFAQVKHGL 164 (186)
Q Consensus 123 iivlNK~Dl~~~~~~~~~~~---~~~l~~~~p~a~i~~~Sa~~g~ 164 (186)
++|.||.|+.++.....+.. ...+... -.++-+..+++...
T Consensus 133 ilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~-~~~~~i~~~c~~~~ 176 (202)
T cd04102 133 LVIGTKLDQIPEKESSGNLVLTARGFVAEQ-GNAEEINLNCTNGR 176 (202)
T ss_pred EEEEECccchhhcccchHHHhhHhhhHHHh-cCCceEEEecCCcc
Confidence 99999999976521111111 1222221 24567777776443
No 345
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.94 E-value=0.53 Score=41.10 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=49.5
Q ss_pred cCCcEEEEecCCCeeEE-----ee-e-ee---cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccc
Q 029893 72 FKADLLLCESGGDNLAA-----NF-S-RE---LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-----~~-~-~~---~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~ 137 (186)
.++|+|||+|.|..-.. .+ . .. ...-+.+|++++....... .+. .+. .+-+++||+|-...
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~-~~~vI~TKlDet~~--- 372 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLP-LDGLIFTKLDETSS--- 372 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCC-CCEEEEeccccccc---
Confidence 47999999999942110 00 0 01 1124577788876532111 111 122 36799999998654
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCH-HHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 170 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi-~~l~ 170 (186)
...+...+... ..|+.+++ +|+++ ++|.
T Consensus 373 -~G~i~~~~~~~--~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 373 -LGSILSLLIES--GLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred -ccHHHHHHHHH--CCCEEEEe--CCCCChhhhh
Confidence 22344444433 35888777 68886 5554
No 346
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=91.84 E-value=0.09 Score=32.81 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=18.9
Q ss_pred cCceEEEEEeCCCCCCCc----c----CCCCCC-CceeEEEEecCC
Q 029893 94 LADYIIYIIDVSGGDKIP----R----KGGPGI-TQADLLVINKTD 130 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~----~----~~~~~~-~~adiivlNK~D 130 (186)
+.+.+++++|+++.-... . .....+ ..|-++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 457899999998742211 0 111224 578999999998
No 347
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=91.75 E-value=0.14 Score=41.35 Aligned_cols=61 Identities=16% Similarity=0.000 Sum_probs=38.5
Q ss_pred CcEEEEecCCCeeE---E-ee------------eee-cCceEEEEEeCCCCCCCcc--C---CCCCCCceeEEEEecCCC
Q 029893 74 ADLLLCESGGDNLA---A-NF------------SRE-LADYIIYIIDVSGGDKIPR--K---GGPGITQADLLVINKTDL 131 (186)
Q Consensus 74 ~D~iiIEtsG~~l~---~-~~------------~~~-~ad~~v~VvDa~~~~~~~~--~---~~~~~~~adiivlNK~Dl 131 (186)
+|+.||+|.|..-. . +. ... ..+++++|+|+..+..... . +........++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 89999999995211 0 00 011 2368999999876533221 1 112234578999999999
Q ss_pred CCc
Q 029893 132 ASA 134 (186)
Q Consensus 132 ~~~ 134 (186)
.++
T Consensus 205 ~~~ 207 (240)
T smart00053 205 MDE 207 (240)
T ss_pred CCc
Confidence 876
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.52 E-value=1.2 Score=38.49 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=53.0
Q ss_pred hcCCcEEEEecCCCeeEEee---------eeecCc-eEEEEEeCCCCCCCccCCCCCCC--ceeEEEEecCCCCCccccc
Q 029893 71 LFKADLLLCESGGDNLAANF---------SRELAD-YIIYIIDVSGGDKIPRKGGPGIT--QADLLVINKTDLASAIGAD 138 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~~---------~~~~ad-~~v~VvDa~~~~~~~~~~~~~~~--~adiivlNK~Dl~~~~~~~ 138 (186)
..++|+|||+|+|-...... .....+ -+++|+|++.+..........+. ..+-++++|.|-....
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~--- 328 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCV--- 328 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcc---
Confidence 35899999999993211110 000113 47899999886432221111121 2578999999976542
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCH-HHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 170 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi-~~l~ 170 (186)
-.+...+... ..|+.+++ +|+++ ++|.
T Consensus 329 -G~~l~~~~~~--~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 329 -GNLISLIYEM--RKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred -hHHHHHHHHH--CCCEEEEe--CCCCChhhhh
Confidence 2333333332 35787777 68888 5664
No 349
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=91.10 E-value=0.2 Score=35.41 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=18.5
Q ss_pred EEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc
Q 029893 125 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK 161 (186)
Q Consensus 125 vlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~ 161 (186)
++||+|+..+ ++-.+++++.+|..+++++||.
T Consensus 1 AaNK~D~~~a-----~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAA-----DENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S------HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCcccccccc-----HhHHHHHHHhCCCCceeeccHH
Confidence 5899997443 1233445555688899999986
No 350
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=90.45 E-value=0.13 Score=43.32 Aligned_cols=97 Identities=21% Similarity=0.122 Sum_probs=59.1
Q ss_pred CCcEEEEecCCC----e--eEEeee-----eecCceEEEEEeCCCCCCCcc-----CCCCCCCc-------eeEEEEecC
Q 029893 73 KADLLLCESGGD----N--LAANFS-----RELADYIIYIIDVSGGDKIPR-----KGGPGITQ-------ADLLVINKT 129 (186)
Q Consensus 73 ~~D~iiIEtsG~----~--l~~~~~-----~~~ad~~v~VvDa~~~~~~~~-----~~~~~~~~-------adiivlNK~ 129 (186)
+--+++.+|+|- + +.+.|. ...+|+++.|+|.++++.... ....++.. .-+=|=||+
T Consensus 225 g~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 678999999992 1 111121 123699999999999753211 01112222 133456888
Q ss_pred CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
|..+.. . + .+.| -.+.+||++|.|++++++.+.......+
T Consensus 305 D~e~~~--~-e------~E~n---~~v~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 305 DYEEDE--V-E------EEKN---LDVGISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccccc--C-c------cccC---CccccccccCccHHHHHHHHHHHhhhhh
Confidence 876541 1 1 0112 2578899999999999999887665544
No 351
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=89.89 E-value=0.23 Score=45.96 Aligned_cols=58 Identities=24% Similarity=0.164 Sum_probs=37.2
Q ss_pred cCCcEEEEecCCCeeEEe----eeeecCceEEEEEeCCCCCCCccC-CCCC---CCceeEEEEecCC
Q 029893 72 FKADLLLCESGGDNLAAN----FSRELADYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTD 130 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~----~~~~~ad~~v~VvDa~~~~~~~~~-~~~~---~~~adiivlNK~D 130 (186)
.++=+-+|++.| .+.-. ....++|..++++|+.+|--.+.. ..+| -+...++|+||+|
T Consensus 70 ~~~~~nlidspg-hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 70 KDYLINLIDSPG-HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred CceEEEEecCCC-ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhh
Confidence 467778899999 33111 112357899999999988543221 1111 1336899999999
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.30 E-value=0.65 Score=41.78 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=49.1
Q ss_pred cCCcEEEEecCCCeeEEe-----e-eee--cCceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN-----F-SRE--LADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-----~-~~~--~ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.++|+|||+|.|..-... + .+. ...-.++|+++....... ..+.. ...+-+|+||+|.... +
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f~~--~~~~gvILTKlDEt~~----l 500 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAH--AKPQGVVLTKLDETGR----F 500 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHHHh--hCCeEEEEecCcCccc----h
Confidence 479999999999421110 0 000 112356778876542111 11111 1357899999998644 3
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCH-HHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGV-EEI 169 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi-~~l 169 (186)
-.+...+... ..||.+++ +|+.+ ++|
T Consensus 501 G~aLsv~~~~--~LPI~yvt--~GQ~VPeDL 527 (559)
T PRK12727 501 GSALSVVVDH--QMPITWVT--DGQRVPDDL 527 (559)
T ss_pred hHHHHHHHHh--CCCEEEEe--CCCCchhhh
Confidence 3444444333 35888887 68888 454
No 353
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.21 E-value=0.42 Score=43.01 Aligned_cols=82 Identities=20% Similarity=0.058 Sum_probs=52.6
Q ss_pred eecCceEEEEEeCCCCC---CCccCCC--------CCCCceeEEEEecCCCCCcccccHHH----HHHHHHhhCCCCCEE
Q 029893 92 RELADYIIYIIDVSGGD---KIPRKGG--------PGITQADLLVINKTDLASAIGADLAV----MERDALRMRDGGPFI 156 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~---~~~~~~~--------~~~~~adiivlNK~Dl~~~~~~~~~~----~~~~l~~~~p~a~i~ 156 (186)
++.||++.++.+..+.. ....+|. .-.+.|.|+|.||+|+.+......+. +....+++ -..+
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei---Etci 153 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI---ETCI 153 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH---HHHH
Confidence 34678988888776632 2222222 22567999999999998753221122 22222222 2668
Q ss_pred EEeccCCCCHHHHHHHHHHH
Q 029893 157 FAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 157 ~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.+||++..++.+++.+..+.
T Consensus 154 ecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 154 ECSALTLANVSELFYYAQKA 173 (625)
T ss_pred hhhhhhhhhhHhhhhhhhhe
Confidence 99999999999999887654
No 354
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=88.80 E-value=0.54 Score=38.08 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=25.9
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 151 DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 151 p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...|++..||+++.|++.|++.+.+++|.
T Consensus 239 ~~~pv~~gSa~~~~G~~~ll~~~~~~~p~ 267 (268)
T cd04170 239 LLVPVLCGSALTNIGVRELLDALVHLLPS 267 (268)
T ss_pred CEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence 45699999999999999999999998763
No 355
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=0.15 Score=38.85 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=50.0
Q ss_pred cCceEEEEEeCCCCCCCccCC---------CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhh-----------C-C-
Q 029893 94 LADYIIYIIDVSGGDKIPRKG---------GPGITQADLLVINKTDLASAIGADLAVMERDALRM-----------R-D- 151 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~~~---------~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~-----------~-p- 151 (186)
.+|.+|+++|+-+.+...+.. ......|.+|+.||+|...+ ...++++..+.-. . +
T Consensus 87 ~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~ 164 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSN 164 (193)
T ss_pred hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCC
Confidence 468899999997754332211 11234588999999999876 3333333222110 0 1
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 152 --GGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 152 --~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
-..++.+|...+.|-.+-+.|+.++
T Consensus 165 ~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 165 VRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCeEEEEEEEEEccCccceeeeehhhh
Confidence 1367888988888877777776654
No 356
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.13 E-value=0.64 Score=40.64 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=50.5
Q ss_pred hcCCcEEEEecCCCeeEEe-----e----e---eecCceEEEEEeCCCCCCCccCCCC--CCCceeEEEEecCCCCCccc
Q 029893 71 LFKADLLLCESGGDNLAAN-----F----S---RELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLASAIG 136 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~-----~----~---~~~ad~~v~VvDa~~~~~~~~~~~~--~~~~adiivlNK~Dl~~~~~ 136 (186)
..++|+|||+|+|.+-... + . .....-+++|+|++.+......... ..-..+-++++|.|-....
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~- 375 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFL- 375 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCc-
Confidence 4689999999999421100 0 0 0011246889999886532111111 1113588999999976542
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~ 168 (186)
-.+....... ..|+.+++ +|+++.+
T Consensus 376 ---G~il~i~~~~--~lPI~ylt--~GQ~VPe 400 (432)
T PRK12724 376 ---GSFLELADTY--SKSFTYLS--VGQEVPF 400 (432)
T ss_pred ---cHHHHHHHHH--CCCEEEEe--cCCCCCC
Confidence 2233333333 35887777 5777743
No 357
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.09 E-value=0.52 Score=44.09 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred cCCcEEEEecCCCeeEE-----e---e-eeecCceEEEEEeCCCCCCCc----cCCCCCC-CceeEEEEecCCCCCcccc
Q 029893 72 FKADLLLCESGGDNLAA-----N---F-SRELADYIIYIIDVSGGDKIP----RKGGPGI-TQADLLVINKTDLASAIGA 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-----~---~-~~~~ad~~v~VvDa~~~~~~~----~~~~~~~-~~adiivlNK~Dl~~~~~~ 137 (186)
.++|+|||+|+|.+-.. . + .....+-+++|+|++...+.. ..|.... ...+=++++|.|-....
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~-- 339 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHL-- 339 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCc--
Confidence 47899999999932100 0 0 011124578999998642211 1222111 02467899999977542
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCH-HHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 170 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi-~~l~ 170 (186)
-.+...+... ..||.+++ +|+++ ++|.
T Consensus 340 --G~iL~i~~~~--~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 340 --GPALDTVIRH--RLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred --cHHHHHHHHH--CCCeEEEe--cCCCChhhcc
Confidence 2233333332 35888888 78998 6664
No 358
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=87.97 E-value=1.2 Score=39.39 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCceeEEEEecCCCCCc-------ccccHHHHHHHHHhh--CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 118 ITQADLLVINKTDLASA-------IGADLAVMERDALRM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 118 ~~~adiivlNK~Dl~~~-------~~~~~~~~~~~l~~~--~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+..+.+||++|+|.+.. ..+.++.+.+.+|.+ .-+|-+++||.+...+++-|..+|...+.
T Consensus 195 lGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 195 LGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred cCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 56789999999997542 113345566677764 35789999999999999999999876554
No 359
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=87.83 E-value=1.2 Score=38.63 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=47.2
Q ss_pred cCCcEEEEecCCCeeEEe---------eeeecCceEEEEEeCCCCCCCccCCCCCCCc--eeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLAAN---------FSRELADYIIYIIDVSGGDKIPRKGGPGITQ--ADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---------~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~--adiivlNK~Dl~~~~~~~~~ 140 (186)
...|+|+|+|+|-+-..+ +......-+-+|++++...........+++. -+-++++|.|-.+. +-
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s----~G 355 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTS----LG 355 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCc----hh
Confidence 467999999999421111 1111112245667776532211111122221 36788999997654 33
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~ 168 (186)
.+...+.+. .-|+.++| +|+.+.+
T Consensus 356 ~~~s~~~e~--~~PV~YvT--~GQ~VPe 379 (407)
T COG1419 356 NLFSLMYET--RLPVSYVT--NGQRVPE 379 (407)
T ss_pred HHHHHHHHh--CCCeEEEe--CCCCCCc
Confidence 444444333 24777777 6887744
No 360
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=86.95 E-value=1.2 Score=37.41 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=43.6
Q ss_pred cCceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc--CCCCHH
Q 029893 94 LADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK--HGLGVE 167 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~--~g~gi~ 167 (186)
..|.+|=|=||.-+.... ..+.. .++-+||+||+||++. .+.....+.++..+-. .++..++. +..++.
T Consensus 46 ~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~--~~~k~~iq~~~~~~~~-~~~~~~c~~~~~~~v~ 120 (335)
T KOG2485|consen 46 LVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADP--KEQKKIIQYLEWQNLE-SYIKLDCNKDCNKQVS 120 (335)
T ss_pred cccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCc--hhhhHHHHHHHhhccc-chhhhhhhhhhhhccc
Confidence 457888888875543211 11111 4578999999999996 4556666666554322 33333333 333455
Q ss_pred HHHHHHHH
Q 029893 168 EIVNHILQ 175 (186)
Q Consensus 168 ~l~~~i~~ 175 (186)
.++..+..
T Consensus 121 ~l~~il~~ 128 (335)
T KOG2485|consen 121 PLLKILTI 128 (335)
T ss_pred cHHHHHHH
Confidence 55554443
No 361
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=0.76 Score=39.56 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=40.3
Q ss_pred cEEEEecCCCe------eEEeee--------eecCceEEEEEeCCCCCCCcc-----CCCCCCCceeEEEEecCCCCCcc
Q 029893 75 DLLLCESGGDN------LAANFS--------RELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLASAI 135 (186)
Q Consensus 75 D~iiIEtsG~~------l~~~~~--------~~~ad~~v~VvDa~~~~~~~~-----~~~~~~~~adiivlNK~Dl~~~~ 135 (186)
.+-||||.|+- +..-|. .+.+|.+++++|+-.-+-..+ .....-+...-||+||.|.++.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdt- 226 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDT- 226 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCH-
Confidence 46689999951 211121 235799999999854332111 0011123356899999999987
Q ss_pred cccHHHHHH
Q 029893 136 GADLAVMER 144 (186)
Q Consensus 136 ~~~~~~~~~ 144 (186)
.++-++..
T Consensus 227 -qqLmRVyG 234 (532)
T KOG1954|consen 227 -QQLMRVYG 234 (532)
T ss_pred -HHHHHHHH
Confidence 66655443
No 362
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=86.81 E-value=0.1 Score=38.78 Aligned_cols=109 Identities=18% Similarity=0.130 Sum_probs=65.3
Q ss_pred cCCcEEEEecCCC-ee----------EEee---eeecCceEEEEEeCCCCCCC---ccCC------CCCCCceeEEEEec
Q 029893 72 FKADLLLCESGGD-NL----------AANF---SRELADYIIYIIDVSGGDKI---PRKG------GPGITQADLLVINK 128 (186)
Q Consensus 72 ~~~D~iiIEtsG~-~l----------~~~~---~~~~ad~~v~VvDa~~~~~~---~~~~------~~~~~~adiivlNK 128 (186)
.+|...=+|.-|- .+ ..|+ .++..|.+|+|+|.++.... ...+ ....+.|..|.-||
T Consensus 49 ~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfank 128 (185)
T KOG0074|consen 49 NGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANK 128 (185)
T ss_pred CCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhh
Confidence 4677777777771 11 1233 23456899999995542111 1111 11234588999999
Q ss_pred CCCCCcccccHHHHHHH--HHhhC-CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 129 TDLASAIGADLAVMERD--ALRMR-DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~--l~~~~-p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
-|++.+ ...++.... +..+- ....|-.+||.+++|+..=.+|+.......+.
T Consensus 129 Qdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~~~tk 183 (185)
T KOG0074|consen 129 QDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPETGTK 183 (185)
T ss_pred hHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCCCCCC
Confidence 999877 333332221 11111 23488899999999999988888876654443
No 363
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=86.46 E-value=3.8 Score=32.89 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=25.4
Q ss_pred chhHhhhhhcCCcEEEEecCCCe---eEEe-----eeeecCceEEEEEeC
Q 029893 63 GPLEELSNLFKADLLLCESGGDN---LAAN-----FSRELADYIIYIIDV 104 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~---l~~~-----~~~~~ad~~v~VvDa 104 (186)
+.+..+.+...+|+|+||+=|.. +-.| .-+...+.+|-|+..
T Consensus 87 e~l~~l~~~~~~D~vLVEADGAk~~PlKaP~~~EPVIP~~t~~VI~V~gl 136 (232)
T TIGR03172 87 STVDDLSDFQHFDVILVEADGAKCRPLKAPSDHEPVIPKSSTTVIGVAGI 136 (232)
T ss_pred HHHHHHHhccCCCEEEEECCCcCCCcccCCCCCCCccCCCCCEEEEEeCH
Confidence 44555543334799999999952 2222 223346777777753
No 364
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=85.49 E-value=2.2 Score=38.97 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=46.6
Q ss_pred CHHHHHHHhcC-CcEEEEEc-----ccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhh-
Q 029893 1 MLALCKFLRDK-YSLAAVTN-----DIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNL- 71 (186)
Q Consensus 1 ~~~~~~~l~~~-~~vaVi~n-----d~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~- 71 (186)
+.+++++|+++ .|||+|.. |+- .+-|..++++.|. ..+.+.++. +-.. .+.. ......+.++...
T Consensus 27 ie~li~~L~~~G~rVavIKh~~h~~d~d~~gkDs~r~~~aGA----~~v~i~s~~~~a~~-~~~~-~~~~~~l~~~l~~l 100 (597)
T PRK14491 27 LEQLIPELNQRGLRLAVIKHAHHNFDVDQPGKDSYRLRKAGA----SQMLVASRVRWALM-TETP-RDGEPELPHLLKQI 100 (597)
T ss_pred HHHHHHHHHhCCceEEEEEcCCcCCCCCCCCchHHHHHHcCC----cEEEEEcCCeEEEE-EEcC-cCCCcCHHHHHHhc
Confidence 46889999875 99999999 333 3578889988776 345555554 3211 1100 0000123333322
Q ss_pred --cCCcEEEEecCC
Q 029893 72 --FKADLLLCESGG 83 (186)
Q Consensus 72 --~~~D~iiIEtsG 83 (186)
.+.|+||||.-+
T Consensus 101 ~~~~~D~vlvEG~k 114 (597)
T PRK14491 101 DADKVDIVLVEGFK 114 (597)
T ss_pred CcCCCCEEEEcCCC
Confidence 368999999888
No 365
>PLN00023 GTP-binding protein; Provisional
Probab=84.95 E-value=0.62 Score=39.38 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=38.4
Q ss_pred CCcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCc---------cCCCC-----------CCCceeEEEEecC
Q 029893 73 KADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIP---------RKGGP-----------GITQADLLVINKT 129 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~-----------~~~~adiivlNK~ 129 (186)
.+.+-|-+|+|-. . ..+..+..++.+|+|+|.+...... ..... ....+.+||.||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 4667888999931 0 0122345689999999998743210 00100 0125789999999
Q ss_pred CCCCc
Q 029893 130 DLASA 134 (186)
Q Consensus 130 Dl~~~ 134 (186)
||.+.
T Consensus 162 DL~~~ 166 (334)
T PLN00023 162 DIAPK 166 (334)
T ss_pred ccccc
Confidence 99754
No 366
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=83.89 E-value=1.4 Score=36.13 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=35.2
Q ss_pred CceEEEEEeCCC-CCCCc-c---CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhC--CCCCEEEEec
Q 029893 95 ADYIIYIIDVSG-GDKIP-R---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQV 160 (186)
Q Consensus 95 ad~~v~VvDa~~-~~~~~-~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~--p~a~i~~~Sa 160 (186)
+|+++++++++. +.... . +.... ..+.++|+||+|++++ .++....+.+++.. -..+++..+.
T Consensus 115 vh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~--~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 115 VHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP--EELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred eEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH--HHHHHHHHHHHHHHHHcCCceECCCC
Confidence 477889898764 22111 1 11111 4578999999999875 44444444333221 2356666554
No 367
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=83.21 E-value=1.3 Score=36.35 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=39.4
Q ss_pred CCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 118 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 118 ~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+-.+.+.++||+|-.+- ++++-+ ..+| .-+++||.++.+++++++.+-.++..
T Consensus 230 ~yVp~iyvLNkIdsISi--EELdii-----~~ip--havpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 230 IYVPCIYVLNKIDSISI--EELDII-----YTIP--HAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred eeeeeeeeecccceeee--ecccee-----eecc--ceeecccccccchHHHHHHHhhcchh
Confidence 45589999999998765 444321 1234 56889999999999999988776653
No 368
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=82.56 E-value=11 Score=33.40 Aligned_cols=75 Identities=9% Similarity=0.102 Sum_probs=42.2
Q ss_pred CceEEEEE-eCCCCCCCccCC----------CCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc--
Q 029893 95 ADYIIYII-DVSGGDKIPRKG----------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK-- 161 (186)
Q Consensus 95 ad~~v~Vv-Da~~~~~~~~~~----------~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~-- 161 (186)
+++.++|. |++=++-....+ ...+.+|-++|+||+|-..+ + ...+.+.+++.+. .|++++|+.
T Consensus 145 stIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~--e-t~~l~~~l~eky~-vpvl~v~c~~l 220 (492)
T TIGR02836 145 STIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHP--E-TEALRQELEEKYD-VPVLAMDVESM 220 (492)
T ss_pred CcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCc--h-hHHHHHHHHHHhC-CceEEEEHHHc
Confidence 45667777 775332211111 23467899999999994433 2 2334445544443 688899875
Q ss_pred CCCCHHHHHHHH
Q 029893 162 HGLGVEEIVNHI 173 (186)
Q Consensus 162 ~g~gi~~l~~~i 173 (186)
+.+.+..+++.+
T Consensus 221 ~~~DI~~il~~v 232 (492)
T TIGR02836 221 RESDILSVLEEV 232 (492)
T ss_pred CHHHHHHHHHHH
Confidence 333444444433
No 369
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=81.86 E-value=0.75 Score=38.03 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=50.6
Q ss_pred EEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc-------ccHHH-HHHHHHhhCC-CCCEEEEeccCCC
Q 029893 98 IIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG-------ADLAV-MERDALRMRD-GGPFIFAQVKHGL 164 (186)
Q Consensus 98 ~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~-------~~~~~-~~~~l~~~~p-~a~i~~~Sa~~g~ 164 (186)
+.+++|++-+....+ .+.++...+..+|+||+|...... ..... +....+..++ ..|.+.+|+.|+.
T Consensus 223 ~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 223 VFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSL 302 (320)
T ss_pred eeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeeccccc
Confidence 366778876644332 355666779999999999764421 11111 2222233222 3477789999999
Q ss_pred CHHHHHHHHHHHH
Q 029893 165 GVEEIVNHILQAW 177 (186)
Q Consensus 165 gi~~l~~~i~~~~ 177 (186)
|++.|+-.+.+..
T Consensus 303 Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 303 GRDLLLLHIAQLR 315 (320)
T ss_pred Cceeeeeehhhhh
Confidence 9999987776654
No 370
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=81.85 E-value=4.1 Score=35.34 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=37.3
Q ss_pred CCceeEEEEecCCCCCcccccHHHHHHHHHhhC-------------------------C---CCCEEEEeccCCCCHHHH
Q 029893 118 ITQADLLVINKTDLASAIGADLAVMERDALRMR-------------------------D---GGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 118 ~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~-------------------------p---~a~i~~~Sa~~g~gi~~l 169 (186)
+..+..+|++|+|..+. .-+++-.+.+.++. | -.|||.+|-.+|++++-|
T Consensus 272 L~VPVfvVVTKIDMCPA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred hcCcEEEEEEeeccCcH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 56789999999999987 44444333332211 1 248999999999999866
Q ss_pred HHHH
Q 029893 170 VNHI 173 (186)
Q Consensus 170 ~~~i 173 (186)
.-++
T Consensus 350 kmFL 353 (641)
T KOG0463|consen 350 KMFL 353 (641)
T ss_pred HHHH
Confidence 5544
No 371
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=81.60 E-value=3.3 Score=31.29 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=41.8
Q ss_pred CHHHHHHHhcC-CcEEEEEcccC------CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc
Q 029893 1 MLALCKFLRDK-YSLAAVTNDIF------TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (186)
Q Consensus 1 ~~~~~~~l~~~-~~vaVi~nd~g------~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~ 72 (186)
|.++++.|+.+ +|+|+|--.-. .+-|.-+.++.|. ..+-+.++. ---++-..| ..|+.+..++...
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa----~~~v~~s~~~~~~~~~~~~--~~L~~vl~~l~~~ 92 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGA----DQVVVASDHRTALMTRTPD--RDLDAVLSRLDPL 92 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhcccc----ceEEEecCCEEEEEEecCC--cCHHHHHHhcCcc
Confidence 46788888876 99999986432 3568888887765 223333443 111100111 2334444443333
Q ss_pred CCcEEEEe
Q 029893 73 KADLLLCE 80 (186)
Q Consensus 73 ~~D~iiIE 80 (186)
+|+|+||
T Consensus 93 -~D~vLVE 99 (161)
T COG1763 93 -LDLVLVE 99 (161)
T ss_pred -cCEEEEe
Confidence 6999999
No 372
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=79.02 E-value=7 Score=32.67 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=48.6
Q ss_pred ecCceEEEEEeCCCCCCCccC-------------------CCCCCCceeEEEEecCCCCCcc----------------cc
Q 029893 93 ELADYIIYIIDVSGGDKIPRK-------------------GGPGITQADLLVINKTDLASAI----------------GA 137 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~-------------------~~~~~~~adiivlNK~Dl~~~~----------------~~ 137 (186)
+.++.+++|+|.++.+..... .+..-..+.++++||.|+..+. ..
T Consensus 183 ~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~ 262 (317)
T cd00066 183 EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPN 262 (317)
T ss_pred CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCC
Confidence 356889999999876432110 0111246899999999964320 01
Q ss_pred cHHHHHHHHHh----hCC----CCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 138 DLAVMERDALR----MRD----GGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 138 ~~~~~~~~l~~----~~p----~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..+.....++. .++ ..-.+.|+|..-+++..+++.+....
T Consensus 263 ~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i 310 (317)
T cd00066 263 DYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDII 310 (317)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHH
Confidence 23333333322 221 22345677777777777777776544
No 373
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=78.29 E-value=2.4 Score=34.68 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 151 DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 151 p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...||+..||.++.|+..|++.+..++|.
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p~ 269 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDYLPS 269 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence 34699999999999999999999998863
No 374
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.16 E-value=2.4 Score=37.64 Aligned_cols=90 Identities=17% Similarity=0.252 Sum_probs=50.7
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeE--Eee--------eeecCceEEEEEeCCCCCCCc---cCC------CCCCCceeE
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLA--ANF--------SRELADYIIYIIDVSGGDKIP---RKG------GPGITQADL 123 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~--~~~--------~~~~ad~~v~VvDa~~~~~~~---~~~------~~~~~~adi 123 (186)
+||.. ++..+||+|+|+|+| +.- .|. ....-|.+++|-.|.-|.+.. .++ ..+-+.-|-
T Consensus 457 ~AI~~-a~~~gfDVvLiDTAG-R~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 457 EAIQE-ARNQGFDVVLIDTAG-RMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHH-HHhcCCCEEEEeccc-cccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 44433 345699999999999 221 121 111238888887765543311 111 123334589
Q ss_pred EEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEe
Q 029893 124 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (186)
Q Consensus 124 ivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~S 159 (186)
++++|.|.+++ .+-.+.... ...+.||+++-
T Consensus 535 ~~ltk~dtv~d---~vg~~~~m~--y~~~~pi~fvg 565 (587)
T KOG0781|consen 535 ILLTKFDTVDD---KVGAAVSMV--YITGKPILFVG 565 (587)
T ss_pred EEEEeccchhh---HHHHHhhhe--eecCCceEEEe
Confidence 99999998876 222222111 12467888874
No 375
>COG3596 Predicted GTPase [General function prediction only]
Probab=77.69 E-value=7.7 Score=32.09 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCeeE--Ee------e-e-eecCceEEEEEeCCCCCCCc-cCC-----CCCCCceeEEEEecCCCCCcc-
Q 029893 73 KADLLLCESGGDNLA--AN------F-S-RELADYIIYIIDVSGGDKIP-RKG-----GPGITQADLLVINKTDLASAI- 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~--~~------~-~-~~~ad~~v~VvDa~~~~~~~-~~~-----~~~~~~adiivlNK~Dl~~~~- 135 (186)
+--.+|-+|.|+.-. .. + . ....|++++++|+.+.+-.. ..+ ........++++|-+|...+.
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 455778899994211 11 1 0 11358899999987754321 111 123446789999999976541
Q ss_pred ----------cccHHHHHHH---H-HhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 136 ----------GADLAVMERD---A-LRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 136 ----------~~~~~~~~~~---l-~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
....+.+..+ + +...|--||+..|+..+.|++++...+.+.+|.
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111112221 1 223456699999999999999999999988874
No 376
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=77.61 E-value=6.6 Score=34.51 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=41.3
Q ss_pred hcCCcEEEEecCCCeeEEeeeee----cCceEEEEEeCCCCCCCcc--CC--CCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDNLAANFSRE----LADYIIYIIDVSGGDKIPR--KG--GPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~~~~~----~ad~~v~VvDa~~~~~~~~--~~--~~~~~~adiivlNK~Dl~~~ 134 (186)
+++.-+=+|+|.| .+......+ .-|..|.|+|++.|-+.+. -| ...+..|-+..+||+|....
T Consensus 99 wkg~rinlidtpg-hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 99 WKGHRINLIDTPG-HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred cccceEeeecCCC-cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence 4466677899999 332222222 2378899999998865432 12 23356688899999998754
No 377
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=75.41 E-value=14 Score=27.68 Aligned_cols=77 Identities=23% Similarity=0.095 Sum_probs=41.7
Q ss_pred HHHHHHHhcC-CcEEEEEcccC-C-----chhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCC
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF-T-----KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA 74 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g-~-----~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~ 74 (186)
.++++.+... +++|+|..+.. . +-|..++.+.|. ..+.+.++.=-.+ +..........+..+....+.
T Consensus 19 ~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa----~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (159)
T cd03116 19 EKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGA----EEVLVSSPRRWAL-IRELRDEPEPDLLLLLRLLDV 93 (159)
T ss_pred HHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCC----CEEEEecCCeEEE-EEEcCCCccccHHHHhhCCCC
Confidence 4677777764 88999998754 2 457778887776 3344444431111 000000000111112222478
Q ss_pred cEEEEecCC
Q 029893 75 DLLLCESGG 83 (186)
Q Consensus 75 D~iiIEtsG 83 (186)
|+||||.-.
T Consensus 94 D~vlvEG~k 102 (159)
T cd03116 94 DLVLVEGFK 102 (159)
T ss_pred CEEEEccCC
Confidence 999999888
No 378
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=75.34 E-value=0.86 Score=33.65 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCcEEEEecCCCeeEE----e--e-eeecCceEEEEEeCCCCCCCcc-----CCCCCCCceeEEEEecC
Q 029893 73 KADLLLCESGGDNLAA----N--F-SRELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKT 129 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~--~-~~~~ad~~v~VvDa~~~~~~~~-----~~~~~~~~adiivlNK~ 129 (186)
..++.||+|+|..-.. . . ....+|++++|+++.+...... .........-++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 5678899999942100 0 0 1245799999999988543221 11111223378888985
No 379
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=75.27 E-value=12 Score=28.68 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=23.7
Q ss_pred HHHHHHHhc-CCcEEEEEcccC------CchhHHHHHhcCC
Q 029893 2 LALCKFLRD-KYSLAAVTNDIF------TKEDGEFLMRNGA 35 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g------~~iD~~~i~~~~~ 35 (186)
.++++.+.. +.|+|+|..+.. .+-|...+++.|.
T Consensus 24 ~~li~~l~~~g~~vg~Ik~~~~~~~~d~~g~Ds~~~r~aGA 64 (173)
T PRK10751 24 KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGA 64 (173)
T ss_pred HHHHHHHhhcCCeEEEEEEcCCCcccCCCCcHHHHHHHhCC
Confidence 567777776 489999998433 2457777776665
No 380
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=74.65 E-value=11 Score=31.81 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=48.4
Q ss_pred ecCceEEEEEeCCCCCCCccC-------------------CCCCCCceeEEEEecCCCCCcc--------------c-cc
Q 029893 93 ELADYIIYIIDVSGGDKIPRK-------------------GGPGITQADLLVINKTDLASAI--------------G-AD 138 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~-------------------~~~~~~~adiivlNK~Dl~~~~--------------~-~~ 138 (186)
+.++.+++|+|.++.+..... .+..-..+.++++||.|+..+. + ..
T Consensus 206 ~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~ 285 (342)
T smart00275 206 DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPND 285 (342)
T ss_pred CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCC
Confidence 346789999999875432110 0111245899999999985320 0 12
Q ss_pred HHHHHHHHH----hhCC-----CCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 139 LAVMERDAL----RMRD-----GGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 139 ~~~~~~~l~----~~~p-----~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.+.....++ ..++ ..-.+.|+|..-.++..+++.+....
T Consensus 286 ~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I 333 (342)
T smart00275 286 YEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDII 333 (342)
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHH
Confidence 223333332 2222 13446778888888888887766543
No 381
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.65 E-value=5 Score=35.08 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=52.0
Q ss_pred hhcCCcEEEEecCCCeeEEe--------eee-ecCceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCCCccc
Q 029893 70 NLFKADLLLCESGGDNLAAN--------FSR-ELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 70 ~~~~~D~iiIEtsG~~l~~~--------~~~-~~ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
...++|.++|+|.|..-... +.. ....-.++|+|++...... ..|.. -..+-++++|.|-....
T Consensus 266 ~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~--~~~~~~I~TKlDEt~~~- 342 (420)
T PRK14721 266 ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG--HGIHGCIITKVDEAASL- 342 (420)
T ss_pred HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC--CCCCEEEEEeeeCCCCc-
Confidence 34588999999999421100 100 0113467889998643211 11211 23578899999987542
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCH-HHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 170 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi-~~l~ 170 (186)
-.+...+... ..|+.+++ +|+++ ++|.
T Consensus 343 ---G~~l~~~~~~--~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 343 ---GIALDAVIRR--KLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred ---cHHHHHHHHh--CCCEEEEE--CCCCchhhhh
Confidence 2333333333 35888877 68888 5554
No 382
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.51 E-value=5.2 Score=35.64 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=52.6
Q ss_pred hhhhhcCCcEEEEecCCCeeEEe--------ee-eecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCC
Q 029893 67 ELSNLFKADLLLCESGGDNLAAN--------FS-RELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 67 ~l~~~~~~D~iiIEtsG~~l~~~--------~~-~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
.+.+..++|+++|+|.|...... +. ...-.-.++|+|++.+..... .|.. . ..+-+++||.|-..
T Consensus 328 aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-~-~~~g~IlTKlDet~ 405 (484)
T PRK06995 328 ALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-P-GLAGCILTKLDEAA 405 (484)
T ss_pred HHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-C-CCCEEEEeCCCCcc
Confidence 34444578999999999321100 00 000122678899976532211 1211 1 24677899999764
Q ss_pred cccccHHHHHHHHHhhCCCCCEEEEeccCCCCH-HHHH
Q 029893 134 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV 170 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi-~~l~ 170 (186)
. .-.+...+... ..||.+++ +|+++ ++|.
T Consensus 406 ~----~G~~l~i~~~~--~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 406 S----LGGALDVVIRY--KLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred c----chHHHHHHHHH--CCCeEEEe--cCCCChhhhc
Confidence 4 23334433333 35888887 78998 6664
No 383
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=72.54 E-value=4.5 Score=32.96 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 151 DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 151 p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.-.||+..||.++.|+..|++.+..++|.
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 34699999999999999999999998863
No 384
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=70.81 E-value=15 Score=31.38 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCcEEEEEcc-----cC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCC
Q 029893 2 LALCKFLRDKYSLAAVTND-----IF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKA 74 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd-----~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~ 74 (186)
.++++.|+...|||+|..+ +. -+-|..++++.|. ..+.+.++. -+...-+ .. +....+....+.
T Consensus 23 ~~l~~~l~~~~~V~~ik~~~~~~~~d~~~~d~~~~~~aga----~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~ 93 (369)
T PRK14490 23 TALVRRLSERFSVGYYKHGCHRFDIDREGKDSDLARKAGA----STVMISDPEKHALIAGG---PP--DPLLERGAFLDC 93 (369)
T ss_pred HHHHHHHhhCceEEEEEeCCCCCCCCcccchHHHHHhccC----cEEEEecCCEEEEEEeC---CC--ChHHHHhccCCC
Confidence 5677888866999999962 33 2568888887765 234554544 2221101 10 112222223478
Q ss_pred cEEEEecCC
Q 029893 75 DLLLCESGG 83 (186)
Q Consensus 75 D~iiIEtsG 83 (186)
|+||||--.
T Consensus 94 D~vlvEG~k 102 (369)
T PRK14490 94 DLLLVEGLK 102 (369)
T ss_pred CEEEECCCC
Confidence 999999655
No 385
>PTZ00258 GTP-binding protein; Provisional
Probab=69.23 E-value=9.1 Score=33.17 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=27.6
Q ss_pred CceeEEEEecC--CCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCC
Q 029893 119 TQADLLVINKT--DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL 164 (186)
Q Consensus 119 ~~adiivlNK~--Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~ 164 (186)
.+|.++|+||. |+.......++.+.+.+.... ..+++++||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~-~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKG-GGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcC-CCeEEEeeHHHHH
Confidence 46889999999 873221133444444443321 3689999986553
No 386
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=68.73 E-value=18 Score=29.70 Aligned_cols=73 Identities=16% Similarity=0.027 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCcEEEEEcccC-----CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCc
Q 029893 2 LALCKFLRDKYSLAAVTNDIF-----TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKAD 75 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g-----~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D 75 (186)
.+|++.|.++-|+|+|-.|.. .+-|..+..+.|. + .+.-+ ++. +-.. .+ ...+..+...+. .++|
T Consensus 19 ~~Li~~L~~~G~V~~IKhd~h~~~~~~g~Ds~~~~~aGa-~--~v~~~-s~~~~~~~-~~---~~~l~~~l~~l~-~~~D 89 (274)
T PRK14493 19 ERLVDRLSGRGRVGTVKHMDTERLNPDGTDTGRHFDAGA-D--VVYGL-TDGEWVAS-GR---DRSLDDALDDLA-PGMD 89 (274)
T ss_pred HHHHHHHHhCCCEEEEEEcCCCcCCCCCCCcHHHHHCCC-c--EEEEe-cCCeEEEE-ec---CCCHHHHHHhhC-cCCC
Confidence 578888886548999999973 3567777776665 1 22323 222 2110 00 122322222222 4799
Q ss_pred EEEEecCC
Q 029893 76 LLLCESGG 83 (186)
Q Consensus 76 ~iiIEtsG 83 (186)
+||||.-+
T Consensus 90 ~vlVEG~k 97 (274)
T PRK14493 90 YAVVEGFK 97 (274)
T ss_pred EEEEECCC
Confidence 99999998
No 387
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=65.87 E-value=0.81 Score=31.65 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=30.6
Q ss_pred EEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc-----CCCC-----CCCceeEEEEecCC
Q 029893 76 LLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR-----KGGP-----GITQADLLVINKTD 130 (186)
Q Consensus 76 ~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~-----~~~~-----~~~~adiivlNK~D 130 (186)
+.|.|+.|..... +.....+|.+++|+|.++...... .+.. .-..|.++|.||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6677888831100 111335799999999887542211 0000 11257899999988
No 388
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=63.58 E-value=22 Score=32.27 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEe--ccCCCCHHHHHHHHHHHHH
Q 029893 117 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ--VKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 117 ~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~S--a~~g~gi~~l~~~i~~~~~ 178 (186)
.+..+.++++||.|.-++ ++.+.++++.++.. +++..+. ++-|+|-.+|-+.+.+...
T Consensus 370 ~FGvPvVVAINKFd~DTe--~Ei~~I~~~c~e~G--v~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 370 KFGVPVVVAINKFVTDTD--AEIAALKELCEELG--VEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HcCCCEEEEEeCCCCCCH--HHHHHHHHHHHHcC--CCEEEecccccCCcchHHHHHHHHHHHh
Confidence 477899999999998776 68888888887653 4554333 5678898888887776655
No 389
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=63.15 E-value=25 Score=29.61 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=40.1
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeEEeeeeec-CceEEEEEeCCCCCCC----cc----CCCCCCCceeEEEEecCCCCC
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLAANFSREL-ADYIIYIIDVSGGDKI----PR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~~~~~~~~-ad~~v~VvDa~~~~~~----~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
.++..+.+..++|+|+.+= | . -...+ .|+-|+++|+..+... +. .-...+..||++++||.+...
T Consensus 118 ~~~~~~~~~~~~dviilDD-G--f---Qh~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~ 191 (326)
T PF02606_consen 118 AAARAALKEFPADVIILDD-G--F---QHRRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASD 191 (326)
T ss_pred HHHHHHHHHCCCCEEEEcC-C--c---ccccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcch
Confidence 4555555455688877553 2 1 01122 4788999998765322 11 112347889999999999764
Q ss_pred c
Q 029893 134 A 134 (186)
Q Consensus 134 ~ 134 (186)
.
T Consensus 192 ~ 192 (326)
T PF02606_consen 192 P 192 (326)
T ss_pred h
Confidence 4
No 390
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=59.49 E-value=27 Score=26.61 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCCCCCc--cCCCCC---C-C-ceeEEEEecCCCCCcccccH-HH----HHHHHHhhCCCCCEEEEeccCC
Q 029893 96 DYIIYIIDVSGGDKIP--RKGGPG---I-T-QADLLVINKTDLASAIGADL-AV----MERDALRMRDGGPFIFAQVKHG 163 (186)
Q Consensus 96 d~~v~VvDa~~~~~~~--~~~~~~---~-~-~adiivlNK~Dl~~~~~~~~-~~----~~~~l~~~~p~a~i~~~Sa~~g 163 (186)
-.+++++|.++..... ..+-.| + . .-.++|.+|-|+.=.-+.++ +. .+...+.+ .|+.+++|+...
T Consensus 94 vaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m--nAsL~F~Sts~s 171 (205)
T KOG1673|consen 94 VAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVM--NASLFFCSTSHS 171 (205)
T ss_pred EEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHh--CCcEEEeecccc
Confidence 3468889987753321 111111 1 1 13689999999642111122 22 22333334 479999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029893 164 LGVEEIVNHILQAW 177 (186)
Q Consensus 164 ~gi~~l~~~i~~~~ 177 (186)
-++..+|..+...+
T Consensus 172 INv~KIFK~vlAkl 185 (205)
T KOG1673|consen 172 INVQKIFKIVLAKL 185 (205)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999776544
No 391
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=57.98 E-value=24 Score=29.78 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHHhcC-CcEEEEEcccC-CchhHHHHHhcCCCC---cCceEeccC--CC-cccCCcccccccCcchhHhhhhhcC
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF-TKEDGEFLMRNGALP---EERIRAVET--GG-CPHAAIREDISINLGPLEELSNLFK 73 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g-~~iD~~~i~~~~~~~---~~~~~~l~~--Gc-cc~l~~r~d~~~~~~~l~~l~~~~~ 73 (186)
..+++.++++ +|+|||--..| ..-....+...+..+ .++-..|.. ++ .+-. ..-..+...+.+..+
T Consensus 69 ~~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~------~dR~~~~~~~~~~~~ 142 (325)
T PRK00652 69 IALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVGDEPLLIARRTGAPVAVS------PDRVAAARALLAAHG 142 (325)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhCcHHHHhccCCCceEEEc------CcHHHHHHHHHhcCC
Confidence 3567777754 89999987776 221110000000000 112233333 33 2211 111134444443448
Q ss_pred CcEEEEecCCCeeEEeeeeec-CceEEEEEeCCCCCCCccC--------CCCCCCceeEEEEecC
Q 029893 74 ADLLLCESGGDNLAANFSREL-ADYIIYIIDVSGGDKIPRK--------GGPGITQADLLVINKT 129 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~~~~~-ad~~v~VvDa~~~~~~~~~--------~~~~~~~adiivlNK~ 129 (186)
+|+||.+= | . -...+ -|+-|+++|+.++.....- -...+..||++++|+.
T Consensus 143 ~dviilDD-G--f---Qh~~l~rdl~Ivl~d~~~~fgng~~LPaG~LREp~~~l~rAd~vv~~~~ 201 (325)
T PRK00652 143 ADIIILDD-G--L---QHYRLARDIEIVVVDGQRGFGNGFLLPAGPLREPPSRLKSVDAVIVNGG 201 (325)
T ss_pred CCEEEEcC-C--c---cCcccCCCeEEEEECCCCCCCCCccCCCcCccCChhHhccCCEEEEeCC
Confidence 88888652 3 1 01122 3778899999775322111 1224778999999994
No 392
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=57.37 E-value=66 Score=25.42 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=55.8
Q ss_pred cCCcEEEEecCCCe-eEE---e------eeeecCceEEEEEeCCCCCCCc--------------cCCCCCC-----Ccee
Q 029893 72 FKADLLLCESGGDN-LAA---N------FSRELADYIIYIIDVSGGDKIP--------------RKGGPGI-----TQAD 122 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~---~------~~~~~ad~~v~VvDa~~~~~~~--------------~~~~~~~-----~~ad 122 (186)
.+..+-+++|+|.. ... . ..++.+|.+++|+|+++..... ...++.+ ...-
T Consensus 45 ~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~gg 124 (233)
T cd01896 45 KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGG 124 (233)
T ss_pred CCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCC
Confidence 35667789999931 010 0 1234579999999997654210 0111111 1123
Q ss_pred EEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 123 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 123 iivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+-+.+|.|+.+. ..+.+++.+++..=.-+.+ +.....+++++.+.+..
T Consensus 125 i~~~~~~~~~~~---~~~~v~~~l~~~~i~~~~v--~~~~~~~~~~~~~~~~~ 172 (233)
T cd01896 125 INITSTVPLTKL---DEKTIKAILREYKIHNADV--LIREDITVDDLIDVIEG 172 (233)
T ss_pred EEEeccCCCCCC---CHHHHHHHHHHhCeeeEEE--EEccCCCHHHHHHHHhC
Confidence 445568887754 3455555666543222333 56778899999988763
No 393
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=55.72 E-value=7.5 Score=31.21 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=50.3
Q ss_pred hcCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCc----cCC------CCCCCceeEEEEecCCCCCcccc
Q 029893 71 LFKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIP----RKG------GPGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~----~~~------~~~~~~adiivlNK~Dl~~~~~~ 137 (186)
..+||+|||++-| -+.+ +.+..+|++|+=.-.+..|... .++ ......+.-|++|++.-... .
T Consensus 81 ~~~~d~VlvDleG--~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~--~ 156 (231)
T PF07015_consen 81 ASGFDFVLVDLEG--GASELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL--T 156 (231)
T ss_pred hcCCCEEEEeCCC--CCchhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh--h
Confidence 3579999999999 2222 2223468887644433322110 000 11123467899999874322 1
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
...+.. ++.....|++.++-.....+.+++.
T Consensus 157 ~~~~~~---~e~~~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 157 RAQRII---SEQLESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHH---HHHHhcCCccccccccHHHHHHHHH
Confidence 222222 2222235788887777666666665
No 394
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=54.48 E-value=14 Score=29.59 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=37.9
Q ss_pred cCceEEEEEeCCCCCCCc--c----------CCCCCCCceeEEEEecCCCCCcccccHHH----HHHHH----HhhCC-C
Q 029893 94 LADYIIYIIDVSGGDKIP--R----------KGGPGITQADLLVINKTDLASAIGADLAV----MERDA----LRMRD-G 152 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~--~----------~~~~~~~~adiivlNK~Dl~~~~~~~~~~----~~~~l----~~~~p-~ 152 (186)
.+.++|+|+|+...+... . .+.+ .....+++.|+|++++ ..... ..+.+ ....+ .
T Consensus 76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp--~~~v~vfiHK~D~l~~--~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP--NIKVFVFIHKMDLLSE--DEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp TESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST--T-EEEEEEE-CCCS-H--HHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeecccCCH--HHHHHHHHHHHHHHHHHhhhccccc
Confidence 457899999998433110 0 1112 2346889999999876 22222 22222 22222 2
Q ss_pred CCEEEEeccCCCCHHHHHHHH
Q 029893 153 GPFIFAQVKHGLGVEEIVNHI 173 (186)
Q Consensus 153 a~i~~~Sa~~g~gi~~l~~~i 173 (186)
..++.||-.. +.+-+-|..+
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~I 171 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKI 171 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHH
T ss_pred eEEEeccCcC-cHHHHHHHHH
Confidence 5778888765 4555544443
No 395
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=54.29 E-value=11 Score=32.12 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=48.2
Q ss_pred ecCceEEEEEeCCCCCCCccCC------------------CCC-CCceeEEEEecCCCCCcc--------------c-cc
Q 029893 93 ELADYIIYIIDVSGGDKIPRKG------------------GPG-ITQADLLVINKTDLASAI--------------G-AD 138 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~~------------------~~~-~~~adiivlNK~Dl~~~~--------------~-~~ 138 (186)
+.++.++++++.++.++....- ... ...+.++.+||.||..+. + ..
T Consensus 217 e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~ 296 (354)
T KOG0082|consen 217 EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNT 296 (354)
T ss_pred cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCC
Confidence 3567899999988876532110 011 245789999999995431 0 12
Q ss_pred HHHHHHHH----HhhC----CCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 139 LAVMERDA----LRMR----DGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 139 ~~~~~~~l----~~~~----p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.+.....+ ++++ ...-.+.|.|..-.+++.++..+....
T Consensus 297 ~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 297 YEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred hHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 22222222 2222 122345567777778888887766543
No 396
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=51.19 E-value=59 Score=22.25 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=32.5
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhC-CCCCEEEEeccCCCCHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMR-DGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~-p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
+.||++|+|=+=-..+...........+.+.+ |.+.|+.+-+.....-+++.+
T Consensus 35 e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~ 88 (98)
T PF00919_consen 35 EEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEELKK 88 (98)
T ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHHHHh
Confidence 56999999998876652222222333444455 888888777665554455543
No 397
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=51.13 E-value=28 Score=30.54 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=32.8
Q ss_pred eeEEEEecCCCCCccc--ccH----HHHHHHHHh--hC--CCCCEEEEeccCCCCHHHHHH
Q 029893 121 ADLLVINKTDLASAIG--ADL----AVMERDALR--MR--DGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 121 adiivlNK~Dl~~~~~--~~~----~~~~~~l~~--~~--p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
.-++++||+|=....+ +.. +.+...++. .| +....+++|+.+|.++.+..+
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 5789999999644211 222 223334442 23 556788999999999988664
No 398
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=51.02 E-value=27 Score=30.10 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=27.6
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCC--CCCEEEEeccCCC
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRD--GGPFIFAQVKHGL 164 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p--~a~i~~~Sa~~g~ 164 (186)
.+|.+++.||.|.... .. ....+.++++.+ .++++++||.-..
T Consensus 206 ~KP~lyvaN~~e~~~~--~~-n~~~~~i~~~~~~~~~~vV~~sA~~E~ 250 (372)
T COG0012 206 AKPMLYVANVSEDDLA--NL-NEYVKRLKELAAKENAEVVPVSAAIEL 250 (372)
T ss_pred cCCeEEEEECCccccc--ch-hHHHHHHHHHhhhcCCcEEEeeHHHHH
Confidence 4689999999998654 22 333344444322 3689999987433
No 399
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=48.92 E-value=30 Score=24.38 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=18.0
Q ss_pred hcCCcEEEEecCCCeeE---EeeeeecCceEEEE
Q 029893 71 LFKADLLLCESGGDNLA---ANFSRELADYIIYI 101 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~V 101 (186)
..++|+++++|.+ .+. ..+ .+.+|++++|
T Consensus 84 ~~~~~~vivDt~a-g~e~~~~~~-~~~~d~vv~v 115 (116)
T cd02034 84 LTRDEQVVVDTEA-GLEHLGRGT-AEGVDLLVVV 115 (116)
T ss_pred ccCCCEEEEecHH-HHHHHHhhc-cccCCEEEEe
Confidence 4588999999988 221 111 2346777664
No 400
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=48.86 E-value=51 Score=27.27 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=35.8
Q ss_pred eeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 121 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 121 adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+.|-||+|.++- ++.+++. + .|. -+.+|+....|++.+++.+-+.+.-
T Consensus 240 ~ClYvYnKID~vs~--eevdrlA---r--~Pn--svViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 240 KCLYVYNKIDQVSI--EEVDRLA---R--QPN--SVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred EEEEEeeccceecH--HHHHHHh---c--CCC--cEEEEeccccCHHHHHHHHHHHhce
Confidence 57889999998875 4444432 2 243 3557888999999999988766653
No 401
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=48.24 E-value=15 Score=29.51 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.4
Q ss_pred CCCceeEEEEecCCCCCc
Q 029893 117 GITQADLLVINKTDLASA 134 (186)
Q Consensus 117 ~~~~adiivlNK~Dl~~~ 134 (186)
+++.|.|=|++|.||.+.
T Consensus 162 ~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 162 SLEVPHINVLSKMDLLKD 179 (273)
T ss_pred HhcCcchhhhhHHHHhhh
Confidence 467799999999999876
No 402
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=47.86 E-value=39 Score=31.05 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=36.9
Q ss_pred CCceeEEEEecCCCCCcccccHHHHHHHHH-hhCCCC--CEEEE---eccCCCCHHHHHHHHHHHHHHhh
Q 029893 118 ITQADLLVINKTDLASAIGADLAVMERDAL-RMRDGG--PFIFA---QVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 118 ~~~adiivlNK~Dl~~~~~~~~~~~~~~l~-~~~p~a--~i~~~---Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.+.--|+|++|+|+++..-+.-.++.+.+. +++|-. -+|.+ -+.....|+++-++=...+..|+
T Consensus 478 ~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~FF~nSk 547 (980)
T KOG0447|consen 478 HGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEFFQNSK 547 (980)
T ss_pred CCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHHHhhhhH
Confidence 345689999999998763345556666554 345532 22222 12233456777666665555554
No 403
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=47.15 E-value=30 Score=26.67 Aligned_cols=63 Identities=27% Similarity=0.249 Sum_probs=34.9
Q ss_pred cCCcEEEEecCCCe-eEEee-----eeecCceEEEEEeCCCCCCCcc---C---------CCCCCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDN-LAANF-----SRELADYIIYIIDVSGGDKIPR---K---------GGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~~-----~~~~ad~~v~VvDa~~~~~~~~---~---------~~~~~~~adiivlNK~Dl~~ 133 (186)
.+..+-+|+.+|-. +...+ ....+..+|+|+|++....... . ....-..+.+|+.||.|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 45578899999931 22111 1223577999999975321000 0 01123458899999999987
Q ss_pred c
Q 029893 134 A 134 (186)
Q Consensus 134 ~ 134 (186)
+
T Consensus 127 A 127 (181)
T PF09439_consen 127 A 127 (181)
T ss_dssp -
T ss_pred c
Confidence 5
No 404
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=46.49 E-value=24 Score=28.10 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=23.0
Q ss_pred cCCcEEEEecCCCe----eEEeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~----l~~~~~~~~ad~~v~VvDa~~ 106 (186)
.++|||||+|.|.. +..+.....+|.+++++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 47999999998821 112222224799988887754
No 405
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=45.82 E-value=18 Score=32.08 Aligned_cols=67 Identities=21% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEecCCCeeEEeeeee------cCceEEEEEeCCCCCC----CccCCCCCCCceeEEEEecCCCCCccc-ccHHHHHHHH
Q 029893 78 LCESGGDNLAANFSRE------LADYIIYIIDVSGGDK----IPRKGGPGITQADLLVINKTDLASAIG-ADLAVMERDA 146 (186)
Q Consensus 78 iIEtsG~~l~~~~~~~------~ad~~v~VvDa~~~~~----~~~~~~~~~~~adiivlNK~Dl~~~~~-~~~~~~~~~l 146 (186)
+++|.| -..|+-+ -+|..|.|+|+..|.+ +.....+.-..|.+=.+||+|.....+ +-++++++.+
T Consensus 85 LLDTPG---HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L 161 (528)
T COG4108 85 LLDTPG---HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEEL 161 (528)
T ss_pred ccCCCC---ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHh
Q ss_pred H
Q 029893 147 L 147 (186)
Q Consensus 147 ~ 147 (186)
.
T Consensus 162 ~ 162 (528)
T COG4108 162 G 162 (528)
T ss_pred C
No 406
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=44.98 E-value=71 Score=28.30 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=41.0
Q ss_pred CHHHHHHHhcC-CcEEEEEcccC-C-----chhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhh-c
Q 029893 1 MLALCKFLRDK-YSLAAVTNDIF-T-----KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-F 72 (186)
Q Consensus 1 ~~~~~~~l~~~-~~vaVi~nd~g-~-----~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~-~ 72 (186)
|.+|+.+|+.+ +|||+|--+-- . +-|..+.++.|. ..+.-.+.+. -.+ ++ +.......+.++... .
T Consensus 18 iekLI~~L~~rG~rVavIKH~hH~fd~D~~GKDS~r~r~AGA---~~V~v~s~~r-~al-~~-~~~~~~~~L~~ll~~l~ 91 (452)
T PRK14495 18 VERLVAAIAARGFSVSTVKHSHHDVDPDPPGSDSHRHRAAGA---AEVVLAGPRR-LIL-TR-EHRGEPPRLAAILERMA 91 (452)
T ss_pred HHHHHHHHHhCCCeEEEEeccCcccCCCCCCCCchhHHhCCC---CEEEEEcCCe-EEE-EE-ecCCCCcCHHHHHhhcc
Confidence 46888999865 99999996532 2 346777776665 1334333322 111 00 000111233444332 3
Q ss_pred CCcEEEEecC
Q 029893 73 KADLLLCESG 82 (186)
Q Consensus 73 ~~D~iiIEts 82 (186)
..|+||||--
T Consensus 92 ~~DlVLVEGf 101 (452)
T PRK14495 92 PVDLVLVEGY 101 (452)
T ss_pred cCCEEEEecc
Confidence 6899999943
No 407
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=44.81 E-value=1.2e+02 Score=22.00 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHHhc-CCcEEEEEccc------C-CchhHHHHHhcCC
Q 029893 2 LALCKFLRD-KYSLAAVTNDI------F-TKEDGEFLMRNGA 35 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~------g-~~iD~~~i~~~~~ 35 (186)
.++++++.+ ++|+|+|.+.- . -+-|..++ +.|.
T Consensus 18 ~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA 58 (140)
T PF03205_consen 18 RKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGA 58 (140)
T ss_dssp HHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-
T ss_pred HHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccc
Confidence 467888885 49999887643 2 24588888 7765
No 408
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=42.35 E-value=91 Score=23.17 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCcEEEEe
Q 029893 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIE 80 (186)
.+++++|.+..++-||.|.+.+- ..+.+..+. +++-+ .|- ...- .-+.+. .++..+ ++..+|.-|+-
T Consensus 32 ~~la~~L~~~~~ltVvTnsl~ia--~~l~~~~~~----~vi~~-GG~~~~~~---~~~~G~-~a~~~l-~~~~~d~afi~ 99 (161)
T PF00455_consen 32 LELAKYLPDKKNLTVVTNSLPIA--NELSENPNI----EVILL-GGEVNPKS---LSFVGP-IALEAL-RQFRFDKAFIG 99 (161)
T ss_pred HHHHHHhhcCCceEEEECCHHHH--HHHHhcCce----EEEEe-CCEEEcCC---CcEECc-hHHHHH-HhhccceEEec
Confidence 35677888767999999997621 122222122 34443 332 3311 000111 344444 46789999999
Q ss_pred cCCCeeE-Eee--e----------eecCceEEEEEeCCCCC
Q 029893 81 SGGDNLA-ANF--S----------RELADYIIYIIDVSGGD 108 (186)
Q Consensus 81 tsG~~l~-~~~--~----------~~~ad~~v~VvDa~~~~ 108 (186)
+.|+... ..+ . .+.++-+++++|.+...
T Consensus 100 ~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~ 140 (161)
T PF00455_consen 100 ADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFG 140 (161)
T ss_pred ccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcC
Confidence 9995321 111 1 11245678889876643
No 409
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=42.22 E-value=37 Score=26.36 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred cCCcEEEEecCCCeeEEe-e---------------eeecCceEEEEEeCCCCCCCc--------cCCCCCCCceeEEEEe
Q 029893 72 FKADLLLCESGGDNLAAN-F---------------SRELADYIIYIIDVSGGDKIP--------RKGGPGITQADLLVIN 127 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-~---------------~~~~ad~~v~VvDa~~~~~~~--------~~~~~~~~~adiivlN 127 (186)
.+..+.||+|+|. -.+ . .....|++++|+......... ..+...+-.--+||++
T Consensus 47 ~g~~v~VIDTPGl--~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT 124 (212)
T PF04548_consen 47 DGRQVTVIDTPGL--FDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFT 124 (212)
T ss_dssp TTEEEEEEE--SS--EETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred cceEEEEEeCCCC--CCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhh
Confidence 4788999999994 211 0 011247889999887543211 1133344455788889
Q ss_pred cCCCCCcccccHHH---------HHHHHHhhCCCCCEEEEecc------CCCCHHHHHHHHHHHHHHhhc
Q 029893 128 KTDLASAIGADLAV---------MERDALRMRDGGPFIFAQVK------HGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 128 K~Dl~~~~~~~~~~---------~~~~l~~~~p~a~i~~~Sa~------~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.+|-..+ ..+++ +.+.++.. ..+++..+.+ ....+.+|++.+.+......+
T Consensus 125 ~~d~~~~--~~~~~~l~~~~~~~l~~li~~c--~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 125 HADELED--DSLEDYLKKESNEALQELIEKC--GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EGGGGTT--TTHHHHHHHHHHHHHHHHHHHT--TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccccc--ccHHHHHhccCchhHhHHhhhc--CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 9987765 33322 22223333 2366666655 345788899888887776543
No 410
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.71 E-value=11 Score=29.53 Aligned_cols=54 Identities=13% Similarity=-0.031 Sum_probs=36.5
Q ss_pred ceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 120 ~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.|.++..||.|.... .....-....+.. ....+++||++.-+++.=|-|+++.+
T Consensus 115 iPiv~cGNKvDi~~r--~~k~k~v~~~rkk--nl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 115 IPIVLCGNKVDIKAR--KVKAKPVSFHRKK--NLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred CCeeeeccceecccc--ccccccceeeecc--cceeEEeecccccccccchHHHhhhh
Confidence 378899999998755 2111112222332 35889999999999998888877643
No 411
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=41.06 E-value=24 Score=29.16 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=21.5
Q ss_pred cCCcEEEEecCCCee----EEeeeeecCceEEEEEeCC
Q 029893 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVS 105 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l----~~~~~~~~ad~~v~VvDa~ 105 (186)
..||||||++.|... ..+.....+|.+++++.+.
T Consensus 121 ~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e 158 (296)
T TIGR02016 121 WDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND 158 (296)
T ss_pred ccCCEEEEecCCCccccccccchhhhhCCeEEEEecch
Confidence 379999999988211 1122223478888887654
No 412
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=40.34 E-value=95 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.055 Sum_probs=17.2
Q ss_pred HHHHhcC-CcEEEEEcc-------cC-CchhHHHHH
Q 029893 5 CKFLRDK-YSLAAVTND-------IF-TKEDGEFLM 31 (186)
Q Consensus 5 ~~~l~~~-~~vaVi~nd-------~g-~~iD~~~i~ 31 (186)
.++++.. +|.++|-+| +| .+.=.+++.
T Consensus 191 ~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr 226 (348)
T KOG4584|consen 191 LARLKGKPHKCALIFVDNSGFDVILGILPFARELLR 226 (348)
T ss_pred HHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHh
Confidence 3445544 888999888 66 455555554
No 413
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.29 E-value=22 Score=27.16 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=35.3
Q ss_pred cCCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCCCCCCcc-C---CCCCCCc-eeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGGDKIPR-K---GGPGITQ-ADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~~~~~~~-~---~~~~~~~-adiivlNK~Dl~~ 133 (186)
..+|+|||+++....... .....+|.+++|+++........ . ..+.... -.-+|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCccccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 589999999997321111 11134799999998865422110 0 1111222 2467899999653
No 414
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=40.09 E-value=20 Score=26.75 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCcEEEEecCCCeeEEee--eeecCceEEEEEeCCCCCCCc-cCCC---CCC---CceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKIP-RKGG---PGI---TQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~--~~~~ad~~v~VvDa~~~~~~~-~~~~---~~~---~~adiivlNK~Dl~~~ 134 (186)
.+|+|||||.+. +.... ....+|.+|+++++....-.. ..+. ..+ -....+|+||++.-++
T Consensus 94 ~yD~iiiD~~~~-~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 94 DYDYIIIDTPPG-LSDPVRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp TSSEEEEEECSS-SSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred cccceeeccccc-ccHHHHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 499999999882 21111 123579999999876522100 0000 011 1245789999987654
No 415
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=40.00 E-value=50 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred CCceeEEEEecCCCCCc
Q 029893 118 ITQADLLVINKTDLASA 134 (186)
Q Consensus 118 ~~~adiivlNK~Dl~~~ 134 (186)
+..|..+|+||+|+++-
T Consensus 68 ~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 68 VRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CCCCeEeeeECCCcccC
Confidence 56799999999999975
No 416
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=39.25 E-value=28 Score=32.33 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 151 DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 151 p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
...|++..||+++.|++.|++.|..++|.-
T Consensus 252 ~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP 281 (689)
T TIGR00484 252 EFFPVLCGSAFKNKGVQLLLDAVVDYLPSP 281 (689)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHCCCc
Confidence 445888899999999999999999988854
No 417
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=39.23 E-value=39 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=22.9
Q ss_pred cCCcEEEEecCCCee----EEeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l----~~~~~~~~ad~~v~VvDa~~ 106 (186)
..+|||+|+|.|.-. ..+.....+|.+++++++..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~ 153 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF 153 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccH
Confidence 479999999988211 11122125789999887754
No 418
>PF07846 Metallothio_Cad: Metallothionein family; InterPro: IPR012484 The sequence making up family 7 of the metallothionein superfamily are found repeated in metallothionein proteins expressed by two Tetrahymena species. Metallothioneins are low molecular mass, cysteine-rich metal-binding proteins that are thought to be involved in the regulation of levels of trace metals, and detoxification of these metals when present in excess []. Some of the metallothioneins found in this family (for example, Q8T6B3 from SWISSPROT) are known to be induced by cadmium and are thought to be involved in the cellular sequestration of toxic metal ions. The high proportion of cysteine residues allows the metal ions to be bound by the formation of clusters of metal-thiolate complexes []. Tetrahymena spp. metallothioneins differ from other eukaryotic metallothioneins mainly in the length of their sequences and in the cysteine-containing motifs they exhibit. ; GO: 0046870 cadmium ion binding
Probab=37.04 E-value=16 Score=17.65 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=3.9
Q ss_pred cCCCcc
Q 029893 45 ETGGCP 50 (186)
Q Consensus 45 ~~Gccc 50 (186)
++||||
T Consensus 15 nsG~~C 20 (21)
T PF07846_consen 15 NSGCCC 20 (21)
T ss_pred CCcccc
Confidence 467766
No 419
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=36.71 E-value=47 Score=30.10 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=34.9
Q ss_pred eEEEEecCCCCCcccccHHHHHHHHHh--------------hCC---CCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 122 DLLVINKTDLASAIGADLAVMERDALR--------------MRD---GGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 122 diivlNK~Dl~~~~~~~~~~~~~~l~~--------------~~p---~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.++.+||.|+.+.. ...-+.++++. .+| .-.+..+|+++|-|+++|+-.+...+
T Consensus 140 ~~v~~n~vdl~p~d--~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 140 LFVDGNKVDLLPKD--SRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred eEeecccccccccc--ccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 58999999998762 21222223222 122 23456789999999999998776543
No 420
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=36.48 E-value=21 Score=30.57 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=55.5
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCccCC------------------CCC-CCceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPRKG------------------GPG-ITQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~~~------------------~~~-~~~adiivlNK~ 129 (186)
.+..+.+++..|-.-.. .-.++.++.+++|++.++.+.....- .+. -..+.++++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34566777777721000 01123567899999988765432111 011 245789999999
Q ss_pred CCCCc----c-----------c---ccHHHHHHHHHhhC----C-C---C--CEEEEeccCCCCHHHHHHHHHH
Q 029893 130 DLASA----I-----------G---ADLAVMERDALRMR----D-G---G--PFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 130 Dl~~~----~-----------~---~~~~~~~~~l~~~~----p-~---a--~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
|+..+ . + ...+.....++..+ . . - -++.|+|...+.+..+++.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~ 387 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD 387 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence 97321 0 0 12344444444321 1 1 1 3457777777777777777654
No 421
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=36.28 E-value=29 Score=28.70 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=36.3
Q ss_pred CcEEEEecCCCeeEEee--eeecCceEEEEEeCCCCCCCc----cCCCCCCCceeEEEEecCCCC
Q 029893 74 ADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLA 132 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~--~~~~ad~~v~VvDa~~~~~~~----~~~~~~~~~adiivlNK~Dl~ 132 (186)
-|++||+|+- ...+|. +...+|++++|..++-.--.. .+..+.+..+-.+|+||.++-
T Consensus 164 ~~~~IIDsaa-G~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAA-GTGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCC-CCCChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 5888888753 244443 334689999888776532111 122334677899999999543
No 422
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=36.20 E-value=1.5e+02 Score=23.68 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=55.0
Q ss_pred HHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCcEEEEec
Q 029893 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCES 81 (186)
Q Consensus 3 ~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEt 81 (186)
.++++|.+. .+-||.|.+.+- ..+....++ +++-+ .|. -..- + .+.+ ..++..+ +...+|+.|+.+
T Consensus 107 ~l~~~L~~~-~ltVvTNs~~ia--~~l~~~~~~----~vil~-GG~~~~~~--~-~~~G-~~a~~~l-~~~~~d~afis~ 173 (240)
T PRK10411 107 YLARQLPDI-NIQVFTNSHPIC--QELGKRERI----QLISS-GGTLERKY--G-CYVN-PSLISQL-KSLEIDLFIFSC 173 (240)
T ss_pred HHHHhhCCC-CeEEEeCCHHHH--HHHhcCCCC----EEEEE-CCEEeCCC--C-ceEC-HHHHHHH-HhcCCCEEEEec
Confidence 456667543 799999987622 112222222 34432 342 2110 0 0011 1234333 467999999999
Q ss_pred CCCeeEE---eeee----------ecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEec
Q 029893 82 GGDNLAA---NFSR----------ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINK 128 (186)
Q Consensus 82 sG~~l~~---~~~~----------~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK 128 (186)
+|+.... .... ..+.-+++++|.+-...........+...|.++-++
T Consensus 174 ~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~~~~~~~~~l~~id~lITD~ 233 (240)
T PRK10411 174 EGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDE 233 (240)
T ss_pred eeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCCccceEecCHHHCCEEEECC
Confidence 9953211 1111 124557888998765432222222344455555443
No 423
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=36.17 E-value=19 Score=28.25 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=33.4
Q ss_pred cCCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCCCCCCc--c--CCCCCCCc-eeEEEEecCCCC
Q 029893 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGGDKIP--R--KGGPGITQ-ADLLVINKTDLA 132 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~~~~~~--~--~~~~~~~~-adiivlNK~Dl~ 132 (186)
.++|+|||++.+. +... .....+|.+++++++....-.. . ........ -..+++|+.+-.
T Consensus 107 ~~yD~VIiD~p~~-~~~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAG-LERDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCc-cCHHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 4799999999982 2111 1123478899988875432110 0 00011111 245899999853
No 424
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=35.79 E-value=46 Score=26.57 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=22.2
Q ss_pred cCCcEEEEecCCCe----eEEeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~----l~~~~~~~~ad~~v~VvDa~~ 106 (186)
.++|+|||+|.|.. +..+.....+|.+++++.+..
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~ 150 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEY 150 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCch
Confidence 47999999998821 111111124688888887654
No 425
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=35.71 E-value=49 Score=26.58 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=22.7
Q ss_pred cCCcEEEEecCCCeeE----EeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLA----ANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~~~~~~~ad~~v~VvDa~~ 106 (186)
.++|+|||+|.|.... .+.....+|.+++++.+..
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~ 152 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 152 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecchH
Confidence 4799999999883211 1111224788888887654
No 426
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=35.70 E-value=33 Score=31.66 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=31.5
Q ss_pred HHHHHHHHh---hCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALR---MRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~---~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++...+|+ .....||+.-||+++.|++.|++.+..|+|.
T Consensus 267 ~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPs 309 (721)
T KOG0465|consen 267 QQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPS 309 (721)
T ss_pred HHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCC
Confidence 344444444 2457899999999999999999999999884
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=35.67 E-value=19 Score=25.89 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=32.5
Q ss_pred CcEEEEecCCCeeEEee--eeecCceEEEEEeCCCCCCC-----ccCC-CCCCCceeEEEEecCCCC
Q 029893 74 ADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKI-----PRKG-GPGITQADLLVINKTDLA 132 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~--~~~~ad~~v~VvDa~~~~~~-----~~~~-~~~~~~adiivlNK~Dl~ 132 (186)
+|+|+|++.+. +.... ....+|.+++++++....-. .... .......-.+|+|+++-.
T Consensus 45 yd~VIiD~p~~-~~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAG-ISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCC-CCHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 99999999882 21111 12346899999987653211 0000 011112346899999743
No 428
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=34.97 E-value=36 Score=24.36 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=32.1
Q ss_pred hhHhhhhhcCCcEEEEecCCCeeEEeeee--ecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHH
Q 029893 64 PLEELSNLFKADLLLCESGGDNLAANFSR--ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 64 ~l~~l~~~~~~D~iiIEtsG~~l~~~~~~--~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
++.+.....++-.|.+|++|.. ..+... ....+-+.++++..-... ... ..--+|+|..+. ..+..
T Consensus 37 ~l~~~l~~~~~~~v~~E~tg~y-~~~l~~~L~~~g~~v~~vnp~~~~~~--------~~~-~~~~~KtD~~DA--~~ia~ 104 (144)
T PF01548_consen 37 KLLDWLASLGPVLVVMEATGGY-WRPLADFLQDAGIEVVVVNPLQVKRF--------RKS-LGRRAKTDKIDA--RAIAR 104 (144)
T ss_pred HHhhhhcccccccccccccccc-chhhhhheeccccccccccccccccc--------ccc-ccccccccccch--HHHHH
Confidence 3333333334668899999931 111110 112344566655442211 111 115589998877 44443
Q ss_pred H
Q 029893 142 M 142 (186)
Q Consensus 142 ~ 142 (186)
+
T Consensus 105 ~ 105 (144)
T PF01548_consen 105 L 105 (144)
T ss_pred H
Confidence 3
No 429
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=33.18 E-value=51 Score=26.35 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=22.7
Q ss_pred cCCcEEEEecCCCeeEEe-e--eeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAAN-F--SRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-~--~~~~ad~~v~VvDa~~ 106 (186)
.++|+|||+|.|. +... + ....+|.+++++.++.
T Consensus 114 ~~yD~vIIDt~g~-~~~~~~~~al~~aD~vlip~~p~~ 150 (267)
T cd02032 114 EEYDVILFDVLGD-VVCGGFAAPLNYADYALIVTDNDF 150 (267)
T ss_pred ccCCEEEEeCCCC-cccccchhhhhhcCEEEEEecCCc
Confidence 3799999999882 2111 1 1335799988887654
No 430
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=32.97 E-value=63 Score=25.78 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=32.3
Q ss_pred cEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCcEEEEec
Q 029893 13 SLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCES 81 (186)
Q Consensus 13 ~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEt 81 (186)
++.+|.-||- -.+...++... .|- ||.. .+.++.-..+.....||.|+.+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~------------~gF~~vg~------A~~~~ea~~~i~~~~pDLILLDi 54 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI------------PGFSVVGT------AGTLEEAKMIIEEFKPDLILLDI 54 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC------------CCceEEEe------eccHHHHHHHHHhhCCCEEEEee
Confidence 5677777777 46666666543 566 6654 34453444455567889999874
No 431
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=32.97 E-value=55 Score=26.30 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=21.7
Q ss_pred cCCcEEEEecCCCeeEEeee-e---ecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAANFS-R---ELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~-~---~~ad~~v~VvDa~~ 106 (186)
..+|||+|+|.|.-....+. + .-+|.+++++++..
T Consensus 117 ~~yD~iliD~~~~~~~~al~~~~~~~aad~viIp~~p~~ 155 (275)
T PRK13233 117 DDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEM 155 (275)
T ss_pred CCCCEEEEecCCceeeccccccchhccCceEEEeccccH
Confidence 47999999998831111111 0 13688888887653
No 432
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.27 E-value=58 Score=26.23 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=21.1
Q ss_pred cCCcEEEEecCCCeeEEeee----eecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAANFS----RELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~----~~~ad~~v~VvDa~~ 106 (186)
.+||||||+|.|......+. ..-+|.+++++.+..
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~ 154 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEM 154 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCch
Confidence 57999999998721111111 113688888886543
No 433
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.20 E-value=1.3e+02 Score=25.82 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=13.7
Q ss_pred CCCEEEEeccCCCCHHHHHHHH
Q 029893 152 GGPFIFAQVKHGLGVEEIVNHI 173 (186)
Q Consensus 152 ~a~i~~~Sa~~g~gi~~l~~~i 173 (186)
..||+.+|+.+.+|-+..++.+
T Consensus 74 p~pVimvsslt~~g~~~t~~al 95 (350)
T COG2201 74 PLPVIMVSSLTEEGAEATLEAL 95 (350)
T ss_pred CCcEEEEeccccccHHHHHHHH
Confidence 3577777777777755555443
No 434
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=32.14 E-value=22 Score=31.33 Aligned_cols=32 Identities=6% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 151 DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 151 p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
..+||.--||.+++|+..|++.+..|+|.-.+
T Consensus 291 ~a~~i~cgsaiknkgiqplldavtmylpspee 322 (753)
T KOG0464|consen 291 KAAPILCGSAIKNKGIQPLLDAVTMYLPSPEE 322 (753)
T ss_pred hhcceehhhhhcccCccchhhhhhhccCChhh
Confidence 45788889999999999999999888775443
No 435
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=32.09 E-value=46 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=22.2
Q ss_pred cCCcEEEEecCCCee----EEeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l----~~~~~~~~ad~~v~VvDa~~ 106 (186)
.++|||||+|.|... ..+.....+|.+|+++.+..
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 379999999987211 11111234788888887754
No 436
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=32.07 E-value=62 Score=26.01 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=21.1
Q ss_pred cCCcEEEEecCCCeeEEe-e----eeecCceEEEEEeCC
Q 029893 72 FKADLLLCESGGDNLAAN-F----SRELADYIIYIIDVS 105 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-~----~~~~ad~~v~VvDa~ 105 (186)
.++|||+|+|.|. +... + ...-+|.+++++.+.
T Consensus 115 ~~yD~vlID~~~~-~~~~~~~~~~al~aad~vlip~~p~ 152 (273)
T PRK13232 115 DDLDYVFYDVLGD-VVCGGFAMPIREGKAKEIYIVASGE 152 (273)
T ss_pred ccCCEEEEecCCC-eeECCEeccccccccceEEEecCch
Confidence 4799999999883 2111 1 112468888887653
No 437
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=32.06 E-value=53 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=22.3
Q ss_pred cCCcEEEEecCCCeeEEee----eeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAANF----SRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~----~~~~ad~~v~VvDa~~ 106 (186)
..+|||||+|.|......+ ...-+|.+++++.+..
T Consensus 118 ~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~ 156 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEM 156 (295)
T ss_pred ccCCEEEEEcCCCceECCCccccccccCceEEEecCccH
Confidence 4799999999873211112 1124788888887644
No 438
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=31.98 E-value=47 Score=23.50 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHhcC-CcEEEEEccc---C-CchhHHHHHhcCCCCcC--ceEeccCCC
Q 029893 7 FLRDK-YSLAAVTNDI---F-TKEDGEFLMRNGALPEE--RIRAVETGG 48 (186)
Q Consensus 7 ~l~~~-~~vaVi~nd~---g-~~iD~~~i~~~~~~~~~--~~~~l~~Gc 48 (186)
.|+.+ +|.-|=--|+ | ..||.+||...|..|-| .+..++||-
T Consensus 4 ~LksKiHratVT~a~L~YeGSitID~~Ll~aagi~~~E~V~I~Nv~NG~ 52 (111)
T cd06919 4 MLKSKIHRATVTEADLNYEGSITIDEDLLEAAGILPYEKVLVVNVNNGA 52 (111)
T ss_pred hhhhcccceEEeccccccceeEEECHHHHHhcCCCCCCEEEEEECCCCc
Confidence 34445 7777766665 4 58999999998887743 355666664
No 439
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=31.93 E-value=72 Score=26.22 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=22.4
Q ss_pred cCCcEEEEecCCCeeEEe-e--eeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAAN-F--SRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-~--~~~~ad~~v~VvDa~~ 106 (186)
.++|+|+|+|.|. +... + ....+|.+++++++..
T Consensus 114 ~~yD~IiIDt~~~-l~~~a~~aal~~AD~viIp~~p~~ 150 (290)
T CHL00072 114 YEYDIILFDVLGD-VVCGGFAAPLNYADYCIIITDNGF 150 (290)
T ss_pred ccCCEEEEecCCc-ceechhhhhhhcCCEEEEEecCCH
Confidence 3799999999883 2221 1 1234788888887654
No 440
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=31.65 E-value=77 Score=27.25 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=27.0
Q ss_pred CceeEEEEecCCC--CCcccccHHHHHHHHHhhCCCCCEEEEeccC
Q 029893 119 TQADLLVINKTDL--ASAIGADLAVMERDALRMRDGGPFIFAQVKH 162 (186)
Q Consensus 119 ~~adiivlNK~Dl--~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~ 162 (186)
.+|.++++|+.|. ... ...++++.+++.+. ..+++++||+-
T Consensus 199 ~KP~i~v~N~~e~~~~~~-~~~~~~i~~~~~~~--~~~~i~~sa~~ 241 (364)
T PRK09601 199 AKPVLYVANVDEDDLADG-NPYVKKVREIAAKE--GAEVVVICAKI 241 (364)
T ss_pred cCCeEEEEECCccccccc-cHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 4689999999985 222 13455555555442 46899999853
No 441
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=31.07 E-value=68 Score=23.25 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=29.6
Q ss_pred HHhcC-CcEEEEEccc---C-CchhHHHHHhcCCCCcC--ceEeccCCC
Q 029893 7 FLRDK-YSLAAVTNDI---F-TKEDGEFLMRNGALPEE--RIRAVETGG 48 (186)
Q Consensus 7 ~l~~~-~~vaVi~nd~---g-~~iD~~~i~~~~~~~~~--~~~~l~~Gc 48 (186)
.|+.+ +|.-|=--|+ | ..||.+|+...|..|-| .+..++||-
T Consensus 5 mLksKiHratVT~a~L~Y~GSitID~~Ll~aagi~p~E~V~V~Nv~NG~ 53 (126)
T PRK05449 5 MLKSKIHRATVTEADLNYEGSITIDEDLLDAAGILENEKVQIVNVNNGA 53 (126)
T ss_pred hhhhcccceEEeccccccceeEEECHHHHHhcCCCCCCEEEEEECCCCc
Confidence 44555 7777766665 4 58999999998887743 456677764
No 442
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=30.94 E-value=39 Score=24.79 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=11.1
Q ss_pred cCCcEEEEecCC
Q 029893 72 FKADLLLCESGG 83 (186)
Q Consensus 72 ~~~D~iiIEtsG 83 (186)
.++|+++||++|
T Consensus 98 ~~~D~viid~~g 109 (166)
T TIGR00347 98 QKYDFVLVEGAG 109 (166)
T ss_pred hcCCEEEEEcCC
Confidence 579999999998
No 443
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=30.40 E-value=48 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.0
Q ss_pred HHHHHHhcCCcEEEEEcccC
Q 029893 3 ALCKFLRDKYSLAAVTNDIF 22 (186)
Q Consensus 3 ~~~~~l~~~~~vaVi~nd~g 22 (186)
+|.+..+.++++|++++|+|
T Consensus 289 QL~~F~~~k~hialVVDEYG 308 (423)
T COG4536 289 QLVAFQRNKKHIALVVDEYG 308 (423)
T ss_pred HHHHHHHhcceEEEEEeccC
Confidence 45555566699999999999
No 444
>PHA02518 ParA-like protein; Provisional
Probab=29.83 E-value=33 Score=26.05 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=24.0
Q ss_pred hcCCcEEEEecCCCeeEEee---eeecCceEEEEEeCCCC
Q 029893 71 LFKADLLLCESGGDNLAANF---SRELADYIIYIIDVSGG 107 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~~---~~~~ad~~v~VvDa~~~ 107 (186)
...+|+|||+|.|. . .+. ....+|.+|+++.++..
T Consensus 74 ~~~~d~viiD~p~~-~-~~~~~~~l~~aD~viip~~ps~~ 111 (211)
T PHA02518 74 ASGYDYVVVDGAPQ-D-SELARAALRIADMVLIPVQPSPF 111 (211)
T ss_pred hccCCEEEEeCCCC-c-cHHHHHHHHHCCEEEEEeCCChh
Confidence 35899999999992 1 111 12347999999887653
No 445
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=29.74 E-value=70 Score=26.80 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=37.2
Q ss_pred hhHhhhhhcCCcEEEEecCCCeeEEeeeeec-CceEEEEEeCCCCCCC----c----cCCCCCCCceeEEEEecCCC
Q 029893 64 PLEELSNLFKADLLLCESGGDNLAANFSREL-ADYIIYIIDVSGGDKI----P----RKGGPGITQADLLVINKTDL 131 (186)
Q Consensus 64 ~l~~l~~~~~~D~iiIEtsG~~l~~~~~~~~-ad~~v~VvDa~~~~~~----~----~~~~~~~~~adiivlNK~Dl 131 (186)
+...+.+..++|+||.+= | . -.+.+ -|+-|+++|+.++... + ..-..++..||++|+|+.+-
T Consensus 112 a~~~~~~~~~~dviilDD-G--f---Qh~~l~rD~~IvlvD~~~~fgng~lLPaGpLREp~~~l~raD~vvv~~~~~ 182 (311)
T TIGR00682 112 AILLILEQLDPDVIILDD-G--L---QHRKLHRDVEIVVVDGQRPFGNGFLLPAGPLREFPKRLKSADAVIVNGGEN 182 (311)
T ss_pred HHHHHHhcCCCCEEEECC-C--C---cCccccCCeEEEEECCCCCCCCCcccCCcCCCCChhhhhhCCEEEEeCCcc
Confidence 444444344788888653 3 1 01223 3788999999775321 1 11233578899999999853
No 446
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=29.46 E-value=58 Score=27.39 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=35.7
Q ss_pred cCCcEEEEecCCCeeE----E-------eee-eecCceEEEEE--eCCCCCCC--------ccCCCCCCCceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLA----A-------NFS-RELADYIIYII--DVSGGDKI--------PRKGGPGITQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~-------~~~-~~~ad~~v~Vv--Da~~~~~~--------~~~~~~~~~~adiivlNK~ 129 (186)
.+..+.||+|.|+.-. . .+. ....|++++|. |....... ...+...+-..-++|+|++
T Consensus 84 ~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~ 163 (313)
T TIGR00991 84 AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163 (313)
T ss_pred CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECC
Confidence 4788999999994200 0 000 01257888884 43333211 0122333444579999999
Q ss_pred CCCCc
Q 029893 130 DLASA 134 (186)
Q Consensus 130 Dl~~~ 134 (186)
|..++
T Consensus 164 d~~~p 168 (313)
T TIGR00991 164 QFSPP 168 (313)
T ss_pred ccCCC
Confidence 98754
No 447
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=29.44 E-value=77 Score=22.97 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=28.7
Q ss_pred HHhcC-CcEEEEEccc---C-CchhHHHHHhcCCCCcC--ceEeccCCC
Q 029893 7 FLRDK-YSLAAVTNDI---F-TKEDGEFLMRNGALPEE--RIRAVETGG 48 (186)
Q Consensus 7 ~l~~~-~~vaVi~nd~---g-~~iD~~~i~~~~~~~~~--~~~~l~~Gc 48 (186)
.|+.+ +|.-|=.-|+ | +.||.+|+...|..|-| .+..++||-
T Consensus 5 mLksKIHratVT~a~L~Y~GSItID~~Lm~aagi~p~E~V~V~Nv~NG~ 53 (126)
T TIGR00223 5 MLQGKLHRATVTHANLNYEGSITIDEDLLDAAGILENEKVDIVNVNNGK 53 (126)
T ss_pred hhhhhhcceEEeccccccceeEEECHHHHHhcCCCCCCEEEEEECCCCc
Confidence 34445 6766666565 4 58999999998887743 355666663
No 448
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=29.24 E-value=29 Score=27.32 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=32.7
Q ss_pred cCCcEEEEecCCCeeEEee--eeecCceEEEEEeCCCCCCCc----cCCCCCCC-ceeEEEEecCCC
Q 029893 72 FKADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKIP----RKGGPGIT-QADLLVINKTDL 131 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~--~~~~ad~~v~VvDa~~~~~~~----~~~~~~~~-~adiivlNK~Dl 131 (186)
..+|+|||++.+ .+.... ....+|.+++++.+....-.. ........ ....+++|+++-
T Consensus 110 ~~~D~viiD~p~-~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 110 EEFDYVIIDCPA-GIESGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred HhCCEEEEeCCC-CcCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 479999999988 221111 122468888888775432100 00000111 245789999984
No 449
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=28.42 E-value=43 Score=25.91 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=13.1
Q ss_pred cCCcEEEEecCCCeeEEe
Q 029893 72 FKADLLLCESGGDNLAAN 89 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~ 89 (186)
.++|+++||++| .+..+
T Consensus 102 ~~~D~viIEg~g-g~~~~ 118 (222)
T PRK00090 102 QQYDLVLVEGAG-GLLVP 118 (222)
T ss_pred hhCCEEEEECCC-ceecc
Confidence 589999999998 44334
No 450
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=28.35 E-value=2.7e+02 Score=22.38 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEEEEecC
Q 029893 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG 82 (186)
Q Consensus 3 ~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEts 82 (186)
.++++|...+++-||.|.+.+- ..+....+. .++-+ .|....- ...+.+. .++..+ +...+|.-|+-+.
T Consensus 105 ~la~~L~~~~~ltVvTNsl~ia--~~l~~~~~~----~vill-GG~~~~~--~~~~~G~-~a~~~l-~~~~~d~afi~~~ 173 (252)
T PRK10906 105 AVAHALLNHSNLRIVTNNLNVA--NTLMAKEDF----RIILA-GGELRSR--DGGIIGE-ATLDFI-SQFRLDFGILGIS 173 (252)
T ss_pred HHHHHhcCCCCcEEEECcHHHH--HHHhhCCCC----EEEEE-CCEEecC--CCccCCH-HHHHHH-HhccCCEEEEcCC
Confidence 4667776556799999986521 122222222 44432 3332210 0001111 244444 4679999999999
Q ss_pred CCeeE---Eeeee----------ecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEec
Q 029893 83 GDNLA---ANFSR----------ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINK 128 (186)
Q Consensus 83 G~~l~---~~~~~----------~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK 128 (186)
|+... ...++ ..++-++++.|.+-...........+..-|.++-++
T Consensus 174 Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~~~~~~~~~l~~id~iITD~ 232 (252)
T PRK10906 174 GIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQ 232 (252)
T ss_pred EECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCCcceeEecCHHHCCEEEECC
Confidence 94211 01111 124567888998764432221122244456766654
No 451
>CHL00175 minD septum-site determining protein; Validated
Probab=27.82 E-value=40 Score=27.24 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCeeEEee--eeecCceEEEEEeCCC
Q 029893 73 KADLLLCESGGDNLAANF--SRELADYIIYIIDVSG 106 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~--~~~~ad~~v~VvDa~~ 106 (186)
.+|+|||+|.+. +.... ....+|.+++|+++..
T Consensus 126 ~yD~VIiDtpp~-~~~~~~~~l~~aD~viiV~~p~~ 160 (281)
T CHL00175 126 GYDYILIDCPAG-IDVGFINAIAPAQEAIVVTTPEI 160 (281)
T ss_pred CCCEEEEeCCCC-CCHHHHHHHHhcCeeEEEcCCCh
Confidence 799999999882 21111 1134688888887654
No 452
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.65 E-value=60 Score=27.36 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
-++.++++.++|..+|+++||.+.-..+..
T Consensus 60 iefaeQvr~i~~~v~iifIssh~eya~dsf 89 (361)
T COG3947 60 IEFAEQVRDIESAVPIIFISSHAEYADDSF 89 (361)
T ss_pred HHHHHHHHHhhccCcEEEEecchhhhhhhc
Confidence 346677888999999999999876555544
No 453
>KOG4101 consensus Cysteine-rich hydrophobic proteins [General function prediction only]
Probab=27.57 E-value=17 Score=26.94 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=10.7
Q ss_pred ceEeccCCC-cccCCc
Q 029893 40 RIRAVETGG-CPHAAI 54 (186)
Q Consensus 40 ~~~~l~~Gc-cc~l~~ 54 (186)
+++=|--|| ||++++
T Consensus 92 nvrWLlCGc~cCCCtl 107 (175)
T KOG4101|consen 92 NVRWLLCGCLCCCCTL 107 (175)
T ss_pred hhHHHHhhHHHHhhcc
Confidence 677788999 666543
No 454
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=26.85 E-value=68 Score=25.62 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=21.2
Q ss_pred cCCcEEEEecCCCeeEEe-e--eeecCceEEEEEeCC
Q 029893 72 FKADLLLCESGGDNLAAN-F--SRELADYIIYIIDVS 105 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~-~--~~~~ad~~v~VvDa~ 105 (186)
.++|+|||+|.|. +... + ....+|.+++++.+.
T Consensus 114 ~~yD~ViID~~~~-~~~~~~~~~l~aAD~vlip~~~~ 149 (268)
T TIGR01281 114 DDYDVILFDVLGD-VVCGGFATPLQYADYALVVAAND 149 (268)
T ss_pred ccCCEEEEecCCc-cccCccccchhhcCEEEEEecCc
Confidence 4799999999872 2111 1 123478888877653
No 455
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=26.63 E-value=38 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.1
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 155 FIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 155 i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
|+..||.+|..-+.|+..|...++.
T Consensus 11 visasay~g~dte~llkEiedVYKK 35 (82)
T PF06260_consen 11 VISASAYNGNDTEGLLKEIEDVYKK 35 (82)
T ss_pred HHhhhhccCCchHHHHHHHHHHHHH
Confidence 4667899999999998888776654
No 456
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=25.87 E-value=2.8e+02 Score=22.47 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=48.9
Q ss_pred HHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCc--chhHhhhhhcCCcEEEEe
Q 029893 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL--GPLEELSNLFKADLLLCE 80 (186)
Q Consensus 3 ~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~--~~l~~l~~~~~~D~iiIE 80 (186)
.++++|....++-||.|.+.+- ..+....+. +++-+ .|.--.- -.... .++..+ +...+|.-|+-
T Consensus 120 ~la~~L~~~~~ltVvTnsl~ia--~~l~~~~~~----~v~ll-GG~~~~~-----~~~~~G~~a~~~l-~~~~~d~afig 186 (269)
T PRK09802 120 EIARLMRKHTDVIAMTNGMNVA--NALLEAEGV----ELLMT-GGHLRRQ-----SQSFYGDQAEQSL-QNYHFDMLFLG 186 (269)
T ss_pred HHHHhcCcCCCeEEEeCCHHHH--HHHHhCCCC----EEEEE-CCEEecC-----CCceECHHHHHHH-HhccCCEEEEc
Confidence 4667776555799999986521 222222222 44432 3332210 01111 233334 46799999999
Q ss_pred cCCCeeEE---eee----------eecCceEEEEEeCCCCC
Q 029893 81 SGGDNLAA---NFS----------RELADYIIYIIDVSGGD 108 (186)
Q Consensus 81 tsG~~l~~---~~~----------~~~ad~~v~VvDa~~~~ 108 (186)
+.|+.... ..+ ...+.-+++++|.+-..
T Consensus 187 ~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~ 227 (269)
T PRK09802 187 VDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFN 227 (269)
T ss_pred CceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccC
Confidence 99953211 111 11245578889987643
No 457
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=25.61 E-value=77 Score=25.31 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred cCCcEEEEecCCCeeEEe--e-eeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAAN--F-SRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~-~~~~ad~~v~VvDa~~ 106 (186)
.++|+|||+|.|. +... . ....+|.+++++.+..
T Consensus 116 ~~yD~viIDt~g~-~~~~~~~~~l~~AD~viip~~~~~ 152 (270)
T PRK13185 116 DDYDVILFDVLGD-VVCGGFAAPLQYADYALIVTANDF 152 (270)
T ss_pred ccCCEEEEecCCC-cccCcccchhhhCcEEEEEecCch
Confidence 4799999999882 2111 1 1234788888886643
No 458
>PRK10818 cell division inhibitor MinD; Provisional
Probab=24.74 E-value=40 Score=26.93 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.3
Q ss_pred cCCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCCC
Q 029893 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGG 107 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~~ 107 (186)
..+|+|||++.|. +... .....+|.++++++++..
T Consensus 112 ~~yd~viiD~p~~-~~~~~~~~l~~ad~vivv~~p~~~ 148 (270)
T PRK10818 112 MDFEFIVCDSPAG-IETGALMALYFADEAIITTNPEVS 148 (270)
T ss_pred cCCCEEEEeCCCC-ccHHHHHHHHhCCeEEEEcCCCch
Confidence 4799999999872 2111 112347999999887653
No 459
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.43 E-value=2.6e+02 Score=21.47 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEecc----------CCCCHHHHHHHHHHHHHHh
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVK----------HGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~----------~g~gi~~l~~~i~~~~~~~ 180 (186)
+.+..+.+.+++.+|.+||+.+|.. .+...++.-+.+.+.+...
T Consensus 78 ~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 78 ERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQL 131 (178)
T ss_dssp HHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999922 1333445555555555554
No 460
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=24.11 E-value=3.4e+02 Score=24.31 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=38.4
Q ss_pred CCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 117 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 117 ~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+.+|-++++|=.+=.++ +..++.+.+.+.+ ..|++++++. .-.-+++..-+.+.+.+
T Consensus 178 ~igKPFvillNs~~P~s~---et~~L~~eL~ekY-~vpVlpvnc~-~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 178 EIGKPFVILLNSTKPYSE---ETQELAEELEEKY-DVPVLPVNCE-QLREEDITRILEEVLYE 235 (492)
T ss_pred HhCCCEEEEEeCCCCCCH---HHHHHHHHHHHHh-CCcEEEeehH-HcCHHHHHHHHHHHHhc
Confidence 478899999999885443 4556777777665 5899999975 33344444444444433
No 461
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=23.88 E-value=3e+02 Score=20.96 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEecc
Q 029893 98 IIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK 161 (186)
Q Consensus 98 ~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~ 161 (186)
+++|+||-.-.....++ ...-.=++.+|.+-.-+ .-+++....++...+.--++.||-.
T Consensus 51 iivVFDA~~v~g~~~~~---~~~~vsvvyT~~~ETAD--s~IEr~~~el~~~~t~~V~VaTSD~ 109 (173)
T COG3688 51 IIVVFDAHYVPGVGREY---KNHRVSVVYTKEGETAD--SFIERYVAELRNAATHQVIVATSDR 109 (173)
T ss_pred EEEEEEccccccccccc---cccceEEEEecCCccHH--HHHHHHHHHHhccccceEEEEeCch
Confidence 68899986543322222 12235678899986544 4566666666544343456667644
No 462
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=23.15 E-value=25 Score=24.05 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=32.7
Q ss_pred cCCcEEEEecCCCeeE----E---e---e--eeecCceEEEEEeCCCCCCCcc-CCCC--CCCceeEEEEec
Q 029893 72 FKADLLLCESGGDNLA----A---N---F--SRELADYIIYIIDVSGGDKIPR-KGGP--GITQADLLVINK 128 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~---~---~--~~~~ad~~v~VvDa~~~~~~~~-~~~~--~~~~adiivlNK 128 (186)
.+..+.|++|+|+.-. . . + ....+|++++|+|+.+...... .... +-..+-++|+||
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 4567789999995210 0 0 0 1124699999999776321100 0100 134578899998
No 463
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=22.95 E-value=32 Score=20.62 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=3.5
Q ss_pred EeccCCC
Q 029893 42 RAVETGG 48 (186)
Q Consensus 42 ~~l~~Gc 48 (186)
.--+.||
T Consensus 20 tvapggc 26 (56)
T TIGR03602 20 TVAPGGC 26 (56)
T ss_pred EecCCCe
Confidence 3344666
No 464
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.28 E-value=3.6e+02 Score=21.74 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHhc-CCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEEEEec
Q 029893 3 ALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCES 81 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEt 81 (186)
.|++.|++ +.++..+.++-+... .+.+++.|. ++..++...- . .+|+ +.+.++.+..+||+|+++.
T Consensus 22 ~LA~~l~~~g~~v~f~~~~~~~~~-~~~i~~~g~----~v~~~~~~~~-~---~~d~----~~~~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 22 TLARALHAQGAEVAFACKPLPGDL-IDLLLSAGF----PVYELPDESS-R---YDDA----LELINLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHH-HHHHHHcCC----eEEEecCCCc-h---hhhH----HHHHHHHHhcCCCEEEEcC
Confidence 46677754 489999999876322 246666666 4666632210 0 1122 2344555566899999998
Q ss_pred CC
Q 029893 82 GG 83 (186)
Q Consensus 82 sG 83 (186)
-+
T Consensus 89 y~ 90 (279)
T TIGR03590 89 YG 90 (279)
T ss_pred CC
Confidence 77
No 465
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=22.18 E-value=67 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.0
Q ss_pred HHHHHHHhcC-CcEEEEEcccC
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF 22 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g 22 (186)
.+++++++.. ..+|+++||+|
T Consensus 291 ~~lL~~~r~~~~hmAiVvDEyG 312 (429)
T COG1253 291 SDLLEEFREERTHMAIVVDEYG 312 (429)
T ss_pred HHHHHHHHHhCCeEEEEEEcCC
Confidence 4678888875 88999999998
No 466
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=25 Score=31.87 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCeeE----EeeeeecCceEEEEEeCCCCCCCccC-CCCC---CCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~----~~~~~~~ad~~v~VvDa~~~~~~~~~-~~~~---~~~adiivlNK~Dl~ 132 (186)
+|=+=+|++.| .+. -+...+..|..++|+|..+|--.+.. ..+| -+.--++++||.|.+
T Consensus 97 ~FLiNLIDSPG-HVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPG-HVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCC-cccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 44455678888 221 12223445888999999887533221 1111 122468999999963
No 467
>PRK03094 hypothetical protein; Provisional
Probab=21.35 E-value=1.3e+02 Score=20.06 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=31.3
Q ss_pred EEcccC-CchhHHHHHhcCCCCcCceEeccC-----CC-cccCCcccccccCcchhHhhhhhcCCcEEEEecCC
Q 029893 17 VTNDIF-TKEDGEFLMRNGALPEERIRAVET-----GG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGG 83 (186)
Q Consensus 17 i~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~-----Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEtsG 83 (186)
|.-|-| +++... +++.|+ +|+.|.+ +| ||-.+- ....+-.+ +.......+|+++|
T Consensus 4 IaVE~~Ls~i~~~-L~~~GY----eVv~l~~~~~~~~~Da~VitG---~d~n~mgi----~d~~t~~pVI~A~G 65 (80)
T PRK03094 4 IGVEQSLTDVQQA-LKQKGY----EVVQLRSEQDAQGCDCCVVTG---QDSNVMGI----ADTSTKGSVITASG 65 (80)
T ss_pred EEeecCcHHHHHH-HHHCCC----EEEecCcccccCCcCEEEEeC---CCcceecc----cccccCCcEEEcCC
Confidence 334667 677654 455688 6777754 57 774321 12222222 12356788899999
No 468
>PRK11573 hypothetical protein; Provisional
Probab=21.24 E-value=70 Score=27.85 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=17.8
Q ss_pred HHHHHHHhcC-CcEEEEEcccC
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF 22 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g 22 (186)
.++++.++++ ..+|++++|+|
T Consensus 274 ~~lL~~~~~~~~~~AiVvDEyG 295 (413)
T PRK11573 274 STQLVKFQRNKKKVGLVVDEYG 295 (413)
T ss_pred HHHHHHHHhcCCeEEEEEecCC
Confidence 4678888876 78999999999
No 469
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.23 E-value=1.5e+02 Score=26.21 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=30.1
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
..||++++|=|=-.+.+....-.....+++.+|.+.|+.+-+....- ++++
T Consensus 39 ~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~aq~~-~~i~ 89 (437)
T COG0621 39 EEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCLAQAE-EEIL 89 (437)
T ss_pred ccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCccccC-HHHH
Confidence 34888888888766552222223334455566888887776654444 4444
No 470
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=20.97 E-value=1.6e+02 Score=18.83 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=9.6
Q ss_pred cCCcEEEEecCC
Q 029893 72 FKADLLLCESGG 83 (186)
Q Consensus 72 ~~~D~iiIEtsG 83 (186)
-.||+|++|..|
T Consensus 40 V~pDhIvl~~~~ 51 (66)
T PF10842_consen 40 VKPDHIVLEENG 51 (66)
T ss_pred ecCCEEEEEeCC
Confidence 368888888887
No 471
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=20.95 E-value=1.9e+02 Score=26.46 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=42.3
Q ss_pred CCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 117 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 117 ~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
++..+.++.+|+..--++ ++++.+++..++..-.+.+-..=++-|+|-.+|.+.+.+..+
T Consensus 399 ~fg~pvVVaiN~F~~Dt~--~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 399 KSGINPVVCINAFYTDTH--AEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HcCCCeEEEeCCCCCCCH--HHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 367789999999876555 788888887776532222322235778999999988876655
No 472
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.84 E-value=1.4e+02 Score=24.19 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=37.3
Q ss_pred chhHhhhhhcCCcEEEEecCCCeeEEee---eeecCceEEEEEeCCC--CCCCccCCCCCCCceeEEEEecCCCCCc
Q 029893 63 GPLEELSNLFKADLLLCESGGDNLAANF---SRELADYIIYIIDVSG--GDKIPRKGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG~~l~~~~---~~~~ad~~v~VvDa~~--~~~~~~~~~~~~~~adiivlNK~Dl~~~ 134 (186)
+.+..+....++|+|+++++=- ..++ ....+|.+++|+-+.- .-.... ..+.....+|+|+.|-.+.
T Consensus 107 ~~l~~l~~~~~~~~iliD~P~g--~~~~~~~al~~aD~vL~V~~~Da~s~~~L~q---~~l~~~~~~liNq~~~~s~ 178 (243)
T PF06564_consen 107 RALAALKALGPYDWILIDTPPG--PSPYTRQALAAADLVLVVVNPDAASHARLHQ---RALPAGHRFLINQYDPASQ 178 (243)
T ss_pred HHHHHHhccCCCCEEEEeCCCC--CcHHHHHHHHhCCeEEEEeCCCHHHHHHHHH---hcccCCcEEEEeccCccch
Confidence 3344443245789999998761 1121 1234788888775422 111000 1123356889999997765
No 473
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=20.36 E-value=1.9e+02 Score=26.22 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=43.1
Q ss_pred CCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEE--eccCCCCHHHHHHHHHHHHH
Q 029893 117 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA--QVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 117 ~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~--Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+..+.++.+||.---++ ++++.+++..++.. ++...+ =++-|+|-.+|.+.+.+..+
T Consensus 354 ~fg~p~VVaiN~F~~Dt~--~Ei~~v~~~~~~~g--~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 354 KFGVPVVVAINKFSTDTD--AELALVRKLAEEAG--AFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HcCCCeEEEecCCCCCCH--HHHHHHHHHHHHcC--CCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 366789999999886555 78888888887654 344433 35779999999988877665
Done!