Query 029893
Match_columns 186
No_of_seqs 277 out of 1945
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsm_A Hydrogenase expression/ 99.8 3.1E-20 1E-24 144.5 6.5 168 2-182 48-217 (221)
2 3p32_A Probable GTPase RV1496/ 99.8 7.4E-19 2.5E-23 147.2 9.6 171 2-180 97-285 (355)
3 2hf9_A Probable hydrogenase ni 99.8 1.9E-18 6.3E-23 134.8 9.3 167 3-180 57-225 (226)
4 2www_A Methylmalonic aciduria 99.7 1.6E-17 5.5E-22 139.0 10.1 170 2-179 92-279 (349)
5 1nij_A Hypothetical protein YJ 99.6 1.9E-16 6.6E-21 130.7 0.8 138 10-160 29-187 (318)
6 2p67_A LAO/AO transport system 99.5 1.9E-14 6.6E-19 119.8 5.7 173 3-180 75-262 (341)
7 2qm8_A GTPase/ATPase; G protei 99.4 3.4E-13 1.2E-17 112.2 8.0 173 4-180 75-262 (337)
8 1yrb_A ATP(GTP)binding protein 99.4 9.5E-14 3.3E-18 110.4 1.8 106 73-181 108-259 (262)
9 3iev_A GTP-binding protein ERA 99.1 5.7E-11 1.9E-15 97.4 5.4 106 73-180 58-183 (308)
10 4dhe_A Probable GTP-binding pr 99.0 3.5E-10 1.2E-14 87.2 4.8 108 72-181 77-213 (223)
11 4bas_A ADP-ribosylation factor 99.0 6.1E-10 2.1E-14 84.1 5.3 111 71-183 60-193 (199)
12 1ky3_A GTP-binding protein YPT 98.9 6E-09 2E-13 77.1 9.3 107 73-180 57-179 (182)
13 3q72_A GTP-binding protein RAD 98.9 4.8E-09 1.6E-13 76.7 8.4 107 72-180 47-165 (166)
14 2nzj_A GTP-binding protein REM 98.9 3E-09 1E-13 78.4 7.1 108 73-182 51-172 (175)
15 2x77_A ADP-ribosylation factor 98.9 7.1E-09 2.4E-13 77.8 9.2 106 73-180 65-185 (189)
16 1zj6_A ADP-ribosylation factor 98.9 5E-09 1.7E-13 78.6 8.4 107 72-180 58-179 (187)
17 1moz_A ARL1, ADP-ribosylation 98.9 9.3E-09 3.2E-13 76.5 9.6 105 73-179 61-180 (183)
18 1upt_A ARL1, ADP-ribosylation 98.9 6E-09 2.1E-13 76.4 8.0 105 73-179 50-169 (171)
19 1f6b_A SAR1; gtpases, N-termin 98.9 4.4E-09 1.5E-13 80.1 7.3 102 73-176 68-196 (198)
20 1ksh_A ARF-like protein 2; sma 98.9 3.7E-09 1.3E-13 79.1 6.7 106 72-179 60-180 (186)
21 2h57_A ADP-ribosylation factor 98.9 2.9E-09 9.8E-14 80.2 6.0 107 73-181 66-189 (190)
22 4dcu_A GTP-binding protein ENG 98.8 2.5E-09 8.7E-14 92.0 5.8 110 73-182 242-372 (456)
23 2fu5_C RAS-related protein RAB 98.8 3.8E-09 1.3E-13 78.7 5.9 106 73-180 56-172 (183)
24 2g6b_A RAS-related protein RAB 98.8 8E-09 2.7E-13 76.5 7.6 107 73-181 59-176 (180)
25 1m2o_B GTP-binding protein SAR 98.8 2.5E-09 8.4E-14 81.0 4.7 101 73-175 66-188 (190)
26 1wf3_A GTP-binding protein; GT 98.8 6.7E-10 2.3E-14 90.9 1.1 104 71-178 52-172 (301)
27 1r8s_A ADP-ribosylation factor 98.8 7.9E-09 2.7E-13 75.4 6.8 105 72-178 42-161 (164)
28 2lkc_A Translation initiation 98.8 4.6E-09 1.6E-13 77.7 5.6 107 73-182 54-174 (178)
29 3tw8_B RAS-related protein RAB 98.8 3.5E-09 1.2E-13 78.3 4.9 108 73-182 57-174 (181)
30 3con_A GTPase NRAS; structural 98.8 1.2E-08 4E-13 76.6 7.8 108 73-183 68-187 (190)
31 3gee_A MNME, tRNA modification 98.8 1.1E-08 3.7E-13 88.7 8.6 102 72-178 279-397 (476)
32 1z08_A RAS-related protein RAB 98.8 4.2E-09 1.4E-13 77.2 5.2 106 72-179 53-169 (170)
33 3t1o_A Gliding protein MGLA; G 98.8 3.5E-09 1.2E-13 79.4 4.7 108 72-182 72-195 (198)
34 3pqc_A Probable GTP-binding pr 98.8 2.9E-09 1E-13 79.8 4.1 105 73-179 67-194 (195)
35 3q85_A GTP-binding protein REM 98.8 9.3E-09 3.2E-13 75.4 6.6 106 72-179 49-167 (169)
36 1vg8_A RAS-related protein RAB 98.8 1.2E-08 4E-13 77.5 7.3 105 73-179 56-175 (207)
37 3tkl_A RAS-related protein RAB 98.8 5E-09 1.7E-13 78.8 5.2 107 73-181 64-181 (196)
38 3oes_A GTPase rhebl1; small GT 98.8 4.9E-09 1.7E-13 79.7 5.0 109 72-182 70-190 (201)
39 1u8z_A RAS-related protein RAL 98.8 5.8E-09 2E-13 75.9 5.2 104 73-178 51-166 (168)
40 2qu8_A Putative nucleolar GTP- 98.8 5E-09 1.7E-13 81.5 5.0 108 73-180 75-206 (228)
41 1fzq_A ADP-ribosylation factor 98.8 8.6E-09 3E-13 77.3 6.1 105 73-179 59-178 (181)
42 1zd9_A ADP-ribosylation factor 98.8 4.1E-09 1.4E-13 79.3 4.3 106 72-179 65-185 (188)
43 3o47_A ADP-ribosylation factor 98.8 1.3E-08 4.5E-13 84.0 7.6 106 72-179 207-327 (329)
44 2bov_A RAla, RAS-related prote 98.8 1.1E-08 3.7E-13 77.5 6.3 105 73-179 61-177 (206)
45 2a9k_A RAS-related protein RAL 98.8 5.7E-09 1.9E-13 77.6 4.6 107 73-181 65-183 (187)
46 2bcg_Y Protein YP2, GTP-bindin 98.8 1.4E-08 4.8E-13 77.3 6.8 106 73-180 56-172 (206)
47 3t5g_A GTP-binding protein RHE 98.8 5.8E-09 2E-13 77.5 4.6 108 73-182 53-172 (181)
48 2b6h_A ADP-ribosylation factor 98.8 1.6E-08 5.3E-13 76.6 6.9 104 72-177 71-189 (192)
49 1x3s_A RAS-related protein RAB 98.8 2.4E-08 8.3E-13 74.8 7.9 107 72-181 62-180 (195)
50 3bc1_A RAS-related protein RAB 98.8 1.5E-08 5.1E-13 75.7 6.7 106 73-180 69-186 (195)
51 3kkq_A RAS-related protein M-R 98.8 1.9E-08 6.4E-13 74.9 7.1 104 73-178 65-181 (183)
52 2f7s_A C25KG, RAS-related prot 98.7 2.5E-08 8.7E-13 76.4 8.0 105 73-179 83-199 (217)
53 3lvq_E ARF-GAP with SH3 domain 98.7 7.8E-09 2.7E-13 89.5 5.6 109 72-182 364-487 (497)
54 3ihw_A Centg3; RAS, centaurin, 98.7 2E-08 6.8E-13 75.6 7.1 106 73-182 66-183 (184)
55 2h17_A ADP-ribosylation factor 98.7 1.2E-08 4.2E-13 76.1 5.9 102 72-175 63-179 (181)
56 2gf9_A RAS-related protein RAB 98.7 1.5E-08 5E-13 76.1 6.3 106 72-179 69-185 (189)
57 2j1l_A RHO-related GTP-binding 98.7 7.8E-09 2.7E-13 79.6 4.7 109 73-182 81-212 (214)
58 1z0f_A RAB14, member RAS oncog 98.7 1.2E-08 4E-13 75.3 5.4 104 72-177 62-176 (179)
59 1c1y_A RAS-related protein RAP 98.7 9.5E-09 3.3E-13 75.0 4.9 105 72-177 49-165 (167)
60 1wms_A RAB-9, RAB9, RAS-relate 98.7 3.2E-08 1.1E-12 73.0 7.7 104 73-178 55-173 (177)
61 4dsu_A GTPase KRAS, isoform 2B 98.7 1.5E-08 5.2E-13 75.4 6.0 105 73-180 51-167 (189)
62 1xzp_A Probable tRNA modificat 98.7 6.1E-09 2.1E-13 90.4 4.3 102 72-178 289-404 (482)
63 2a5j_A RAS-related protein RAB 98.7 1.7E-08 5.9E-13 76.0 6.2 106 73-180 69-185 (191)
64 1svi_A GTP-binding protein YSX 98.7 1.3E-08 4.4E-13 76.6 5.4 103 74-178 69-194 (195)
65 1wb1_A Translation elongation 98.7 5.1E-09 1.7E-13 90.9 3.5 106 72-179 71-189 (482)
66 1kao_A RAP2A; GTP-binding prot 98.7 7.2E-09 2.5E-13 75.4 3.8 105 73-179 50-166 (167)
67 4djt_A GTP-binding nuclear pro 98.7 2.8E-09 9.5E-14 81.9 1.6 107 74-182 61-178 (218)
68 3clv_A RAB5 protein, putative; 98.7 1.3E-08 4.3E-13 76.5 5.2 103 74-179 93-204 (208)
69 2oil_A CATX-8, RAS-related pro 98.7 2E-08 7E-13 75.5 6.2 107 72-180 72-189 (193)
70 3sjy_A Translation initiation 98.7 7.4E-09 2.5E-13 87.7 4.0 104 74-179 75-192 (403)
71 2fg5_A RAB-22B, RAS-related pr 98.7 2.2E-09 7.6E-14 81.1 0.5 105 72-178 70-185 (192)
72 1z2a_A RAS-related protein RAB 98.7 4.4E-09 1.5E-13 76.9 2.1 104 73-178 53-166 (168)
73 2hjg_A GTP-binding protein ENG 98.7 1.6E-08 5.5E-13 86.5 5.8 109 73-181 222-351 (436)
74 2iwr_A Centaurin gamma 1; ANK 98.7 3.1E-08 1E-12 73.4 6.7 107 73-182 53-172 (178)
75 2fn4_A P23, RAS-related protei 98.7 5.8E-09 2E-13 77.1 2.5 108 73-182 56-175 (181)
76 2efe_B Small GTP-binding prote 98.7 1.1E-08 3.7E-13 75.9 4.0 106 73-180 60-176 (181)
77 2bme_A RAB4A, RAS-related prot 98.7 2.3E-08 7.9E-13 74.5 5.8 106 73-180 58-174 (186)
78 2j0v_A RAC-like GTP-binding pr 98.7 4.5E-09 1.5E-13 80.4 1.8 109 73-182 56-183 (212)
79 1g16_A RAS-related protein SEC 98.7 2.4E-08 8.3E-13 73.0 5.7 104 73-179 51-165 (170)
80 2il1_A RAB12; G-protein, GDP, 98.7 1.3E-08 4.4E-13 76.9 4.2 105 73-178 74-189 (192)
81 2hxs_A RAB-26, RAS-related pro 98.7 9.7E-09 3.3E-13 75.9 3.4 106 73-180 55-174 (178)
82 2hup_A RAS-related protein RAB 98.7 2.7E-08 9.4E-13 75.8 5.9 108 73-181 77-195 (201)
83 1mh1_A RAC1; GTP-binding, GTPa 98.7 3.4E-09 1.2E-13 78.8 0.8 112 72-184 51-185 (186)
84 2q3h_A RAS homolog gene family 98.7 9.1E-09 3.1E-13 77.9 3.0 109 73-182 67-198 (201)
85 2o52_A RAS-related protein RAB 98.7 1E-08 3.6E-13 78.0 3.4 105 73-179 73-188 (200)
86 2ew1_A RAS-related protein RAB 98.7 3.2E-08 1.1E-12 75.8 6.0 106 73-180 74-190 (201)
87 4dkx_A RAS-related protein RAB 98.7 1.2E-08 4.1E-13 79.5 3.6 105 72-178 60-175 (216)
88 2ce2_X GTPase HRAS; signaling 98.7 2.6E-08 8.9E-13 72.2 5.1 104 72-178 49-164 (166)
89 1z06_A RAS-related protein RAB 98.6 2.3E-08 7.7E-13 75.1 4.6 105 73-179 68-188 (189)
90 1ega_A Protein (GTP-binding pr 98.6 6.9E-09 2.4E-13 84.7 1.8 107 71-179 53-175 (301)
91 2fh5_B SR-beta, signal recogni 98.6 6E-09 2.1E-13 79.8 1.4 102 73-176 53-213 (214)
92 2erx_A GTP-binding protein DI- 98.6 1.5E-08 5E-13 74.2 3.4 104 73-178 50-166 (172)
93 1z0j_A RAB-22, RAS-related pro 98.6 1.1E-08 3.9E-13 74.7 2.6 104 72-177 53-167 (170)
94 2y8e_A RAB-protein 6, GH09086P 98.6 9E-09 3.1E-13 75.9 2.0 104 73-178 62-176 (179)
95 2yc2_C IFT27, small RAB-relate 98.6 1.9E-08 6.5E-13 76.1 3.7 105 73-179 72-192 (208)
96 1r2q_A RAS-related protein RAB 98.6 1E-08 3.4E-13 74.9 2.1 104 72-177 53-167 (170)
97 3geh_A MNME, tRNA modification 98.6 1.5E-08 5.3E-13 87.4 3.4 105 71-181 269-386 (462)
98 3cpj_B GTP-binding protein YPT 98.6 9.8E-09 3.3E-13 79.5 1.8 105 73-179 61-176 (223)
99 1zbd_A Rabphilin-3A; G protein 98.6 5.2E-08 1.8E-12 73.8 5.8 105 72-178 55-170 (203)
100 3cph_A RAS-related protein SEC 98.6 5.2E-08 1.8E-12 74.2 5.7 105 73-180 68-183 (213)
101 3iby_A Ferrous iron transport 98.6 2.5E-09 8.7E-14 85.4 -2.1 100 72-176 46-164 (256)
102 1mky_A Probable GTP-binding pr 98.6 8.6E-08 2.9E-12 82.0 7.2 110 73-182 227-358 (439)
103 3reg_A RHO-like small GTPase; 98.6 2.5E-08 8.6E-13 75.2 3.3 109 72-181 69-190 (194)
104 2g3y_A GTP-binding protein GEM 98.6 1.2E-07 4.1E-12 73.5 7.0 107 73-181 86-205 (211)
105 3cbq_A GTP-binding protein REM 98.6 1.7E-07 6E-12 71.1 7.6 108 73-182 71-191 (195)
106 4gzl_A RAS-related C3 botulinu 98.5 9E-09 3.1E-13 78.7 -0.2 104 72-176 76-202 (204)
107 2p5s_A RAS and EF-hand domain 98.5 5E-08 1.7E-12 73.9 3.5 104 73-178 76-196 (199)
108 1u0l_A Probable GTPase ENGC; p 98.5 9.1E-08 3.1E-12 78.0 5.1 81 92-174 82-168 (301)
109 3cb4_D GTP-binding protein LEP 98.5 9.6E-08 3.3E-12 84.9 5.4 102 73-180 70-183 (599)
110 3gj0_A GTP-binding nuclear pro 98.5 8.4E-09 2.9E-13 79.6 -1.2 106 72-181 62-177 (221)
111 1kk1_A EIF2gamma; initiation o 98.5 2.7E-08 9.3E-13 84.4 1.8 104 74-179 83-200 (410)
112 1s0u_A EIF-2-gamma, translatio 98.5 5.1E-08 1.8E-12 82.7 3.5 106 74-179 81-198 (408)
113 3a1s_A Iron(II) transport prot 98.5 1.6E-08 5.3E-13 80.9 0.3 102 72-178 50-166 (258)
114 2fv8_A H6, RHO-related GTP-bin 98.5 6.1E-08 2.1E-12 74.0 3.5 106 73-179 72-200 (207)
115 2dyk_A GTP-binding protein; GT 98.5 1E-08 3.5E-13 74.4 -1.0 99 73-177 48-160 (161)
116 2e87_A Hypothetical protein PH 98.5 1.3E-07 4.4E-12 78.8 5.5 105 72-180 212-337 (357)
117 2atx_A Small GTP binding prote 98.5 1.1E-07 3.6E-12 71.6 4.6 104 73-177 65-191 (194)
118 2gf0_A GTP-binding protein DI- 98.5 1.3E-07 4.4E-12 71.1 5.0 105 72-179 54-171 (199)
119 1g7s_A Translation initiation 98.5 1.6E-07 5.3E-12 83.5 6.2 107 74-180 70-219 (594)
120 3bwd_D RAC-like GTP-binding pr 98.5 2.7E-08 9.2E-13 73.7 1.1 105 72-177 54-179 (182)
121 2gco_A H9, RHO-related GTP-bin 98.5 8.1E-08 2.8E-12 73.0 3.8 104 73-177 72-198 (201)
122 2ywe_A GTP-binding protein LEP 98.5 8.5E-08 2.9E-12 85.2 4.4 105 73-180 72-185 (600)
123 1ek0_A Protein (GTP-binding pr 98.5 8.7E-08 3E-12 69.8 3.7 104 72-177 50-167 (170)
124 3dz8_A RAS-related protein RAB 98.5 2.5E-07 8.5E-12 69.5 6.4 108 72-181 70-188 (191)
125 3q3j_B RHO-related GTP-binding 98.5 4.1E-08 1.4E-12 75.6 1.9 109 72-181 73-205 (214)
126 3l0i_B RAS-related protein RAB 98.5 6.8E-09 2.3E-13 78.8 -2.5 104 73-178 81-195 (199)
127 3tr5_A RF-3, peptide chain rel 98.5 1.1E-07 3.9E-12 83.3 4.9 63 72-134 80-149 (528)
128 3k53_A Ferrous iron transport 98.5 5.4E-09 1.8E-13 83.8 -3.5 104 72-180 48-167 (271)
129 2elf_A Protein translation elo 98.5 1.5E-07 5.2E-12 79.0 5.2 104 72-179 58-180 (370)
130 3th5_A RAS-related C3 botulinu 97.8 2.3E-08 7.9E-13 76.0 0.0 104 72-176 76-202 (204)
131 3j2k_7 ERF3, eukaryotic polype 98.4 1.4E-07 4.7E-12 80.9 4.4 100 72-171 93-217 (439)
132 2cxx_A Probable GTP-binding pr 98.4 1.1E-07 3.7E-12 70.9 3.3 86 95-183 83-188 (190)
133 2atv_A RERG, RAS-like estrogen 98.4 3.4E-07 1.2E-11 69.1 5.8 106 72-180 74-192 (196)
134 2yv5_A YJEQ protein; hydrolase 98.4 1.8E-07 6.1E-12 76.4 4.3 79 92-174 77-164 (302)
135 3i8s_A Ferrous iron transport 98.4 5E-09 1.7E-13 84.4 -5.0 102 72-178 48-168 (274)
136 3p26_A Elongation factor 1 alp 98.4 2.8E-07 9.6E-12 79.8 5.1 97 72-168 109-227 (483)
137 3c5c_A RAS-like protein 12; GD 98.4 1.4E-07 4.8E-12 70.9 2.8 105 72-178 67-185 (187)
138 1puj_A YLQF, conserved hypothe 98.4 4.1E-07 1.4E-11 73.6 5.5 82 93-180 22-107 (282)
139 2c78_A Elongation factor TU-A; 98.3 9.3E-08 3.2E-12 80.9 1.3 106 72-178 73-211 (405)
140 3c5h_A Glucocorticoid receptor 98.3 3E-07 1E-11 73.0 4.0 82 94-178 162-254 (255)
141 1d2e_A Elongation factor TU (E 98.3 1.8E-07 6.2E-12 79.0 2.5 107 72-179 64-195 (397)
142 2cjw_A GTP-binding protein GEM 98.3 1.2E-06 4.2E-11 66.1 6.6 105 73-179 55-172 (192)
143 1m7b_A RND3/RHOE small GTP-bin 98.3 1.7E-07 5.9E-12 70.0 1.3 105 72-177 53-181 (184)
144 1zun_B Sulfate adenylate trans 98.3 2.2E-07 7.6E-12 79.4 2.1 96 73-168 103-213 (434)
145 3izy_P Translation initiation 98.3 4.3E-08 1.5E-12 86.1 -2.5 107 73-179 51-168 (537)
146 1mky_A Probable GTP-binding pr 98.3 2.2E-07 7.6E-12 79.4 2.0 105 72-180 47-167 (439)
147 3cnl_A YLQF, putative uncharac 98.3 2.6E-06 8.8E-11 68.2 7.9 76 94-175 21-97 (262)
148 3b1v_A Ferrous iron uptake tra 98.2 6.6E-08 2.2E-12 77.9 -1.6 100 73-178 48-163 (272)
149 3dpu_A RAB family protein; roc 98.2 1.1E-07 3.6E-12 83.3 -0.5 106 72-180 96-209 (535)
150 1lnz_A SPO0B-associated GTP-bi 98.2 8.3E-07 2.8E-11 73.8 4.9 104 74-181 206-332 (342)
151 1jwy_B Dynamin A GTPase domain 98.2 2E-07 6.7E-12 75.7 0.8 108 73-180 130-263 (315)
152 2aka_B Dynamin-1; fusion prote 98.2 2E-07 6.8E-12 75.0 0.8 103 73-179 124-253 (299)
153 3mca_A HBS1, elongation factor 98.2 4.8E-08 1.6E-12 86.8 -3.3 107 72-178 253-396 (592)
154 3llu_A RAS-related GTP-binding 98.2 9E-07 3.1E-11 66.8 4.2 104 72-176 67-194 (196)
155 2wkq_A NPH1-1, RAS-related C3 98.2 2.9E-07 9.9E-12 74.7 1.3 105 73-178 202-329 (332)
156 2gj8_A MNME, tRNA modification 98.2 2.9E-07 1E-11 68.4 1.2 100 73-181 51-168 (172)
157 2wji_A Ferrous iron transport 98.2 6E-08 2E-12 71.4 -2.6 100 73-177 49-163 (165)
158 3ec1_A YQEH GTPase; atnos1, at 98.2 3.2E-06 1.1E-10 70.8 7.5 84 94-178 71-161 (369)
159 2j69_A Bacterial dynamin-like 98.2 1.4E-06 4.8E-11 78.7 5.5 108 74-181 174-327 (695)
160 2hjg_A GTP-binding protein ENG 98.2 2.2E-07 7.4E-12 79.4 0.2 102 72-179 49-165 (436)
161 1gwn_A RHO-related GTP-binding 98.2 3.4E-07 1.2E-11 70.1 1.2 104 73-177 75-202 (205)
162 3h2y_A GTPase family protein; 98.2 2.2E-06 7.6E-11 71.8 6.0 80 94-177 69-158 (368)
163 3izq_1 HBS1P, elongation facto 98.2 2.1E-07 7.3E-12 82.9 -0.5 97 73-169 244-362 (611)
164 2xtp_A GTPase IMAP family memb 98.2 1.1E-07 3.7E-12 75.4 -2.3 105 72-180 69-209 (260)
165 1zo1_I IF2, translation initia 98.2 1.2E-07 4.1E-12 82.6 -2.2 100 73-175 50-163 (501)
166 2qtf_A Protein HFLX, GTP-bindi 98.1 3.1E-06 1.1E-10 70.8 5.8 105 73-179 225-354 (364)
167 3avx_A Elongation factor TS, e 98.1 1.3E-06 4.5E-11 82.4 3.8 106 72-178 357-485 (1289)
168 3zvr_A Dynamin-1; hydrolase, D 98.1 3.4E-07 1.2E-11 83.3 -0.2 100 73-175 149-274 (772)
169 3qq5_A Small GTP-binding prote 98.1 1.2E-07 4.2E-12 80.9 -3.2 100 75-179 84-196 (423)
170 1dar_A EF-G, elongation factor 98.1 1.8E-06 6.3E-11 77.9 4.0 63 72-134 75-144 (691)
171 2rdo_7 EF-G, elongation factor 98.1 5.6E-06 1.9E-10 74.9 7.0 62 73-134 81-149 (704)
172 1jny_A EF-1-alpha, elongation 98.0 9.5E-07 3.2E-11 75.5 1.3 97 72-168 82-202 (435)
173 1r5b_A Eukaryotic peptide chai 98.0 2.4E-06 8.3E-11 73.7 3.2 98 73-170 120-243 (467)
174 2wjg_A FEOB, ferrous iron tran 98.0 2.3E-07 8E-12 69.1 -3.0 104 73-181 53-171 (188)
175 1f60_A Elongation factor EEF1A 98.0 3.3E-07 1.1E-11 79.0 -2.5 97 72-168 83-201 (458)
176 2xex_A Elongation factor G; GT 98.0 3.5E-06 1.2E-10 76.0 3.7 63 72-134 73-142 (693)
177 3t5d_A Septin-7; GTP-binding p 98.0 2E-06 6.9E-11 68.8 1.8 82 95-179 116-204 (274)
178 2j37_W Signal recognition part 97.9 8.4E-07 2.9E-11 77.3 -1.0 160 2-176 119-310 (504)
179 3vqt_A RF-3, peptide chain rel 97.9 4.1E-06 1.4E-10 73.7 3.3 61 71-134 97-167 (548)
180 2h5e_A Peptide chain release f 97.9 1.2E-05 4.1E-10 70.5 6.1 63 72-134 80-149 (529)
181 4dcu_A GTP-binding protein ENG 97.9 3.9E-06 1.3E-10 72.0 2.4 102 72-179 69-185 (456)
182 2qpt_A EH domain-containing pr 97.9 4.9E-06 1.7E-10 73.3 2.7 111 14-146 105-243 (550)
183 2x2e_A Dynamin-1; nitration, h 97.8 1.3E-06 4.5E-11 72.5 -1.5 102 73-178 129-257 (353)
184 3l82_B F-box only protein 4; T 97.7 3E-05 1E-09 60.3 4.9 84 92-177 123-221 (227)
185 3r7w_A Gtpase1, GTP-binding pr 97.7 1.6E-05 5.6E-10 64.7 3.5 100 73-175 51-177 (307)
186 2dy1_A Elongation factor G; tr 97.7 1.3E-05 4.5E-10 72.0 3.2 60 73-132 73-139 (665)
187 1pui_A ENGB, probable GTP-bind 97.7 2.8E-05 9.5E-10 58.8 4.2 84 94-179 108-199 (210)
188 1zcb_A G alpha I/13; GTP-bindi 97.7 1.4E-05 4.8E-10 66.8 2.5 106 73-178 200-352 (362)
189 1cip_A Protein (guanine nucleo 97.7 1.1E-05 3.6E-10 67.4 1.8 106 73-178 192-343 (353)
190 2zej_A Dardarin, leucine-rich 97.6 8.9E-05 3E-09 55.1 5.8 108 72-182 54-181 (184)
191 3j25_A Tetracycline resistance 97.6 5.1E-06 1.7E-10 74.3 -1.3 104 72-181 65-241 (638)
192 1t9h_A YLOQ, probable GTPase E 97.6 1.1E-05 3.8E-10 66.0 0.8 75 94-172 86-170 (307)
193 3lxx_A GTPase IMAP family memb 97.5 6.9E-05 2.4E-09 58.3 4.1 105 72-180 76-215 (239)
194 3dm5_A SRP54, signal recogniti 97.5 7.6E-05 2.6E-09 64.0 4.4 146 2-169 118-281 (443)
195 2xtz_A Guanine nucleotide-bind 97.5 6.3E-05 2.2E-09 62.7 3.8 106 73-178 182-344 (354)
196 1xjc_A MOBB protein homolog; s 97.5 0.00015 5.1E-09 54.3 5.3 76 2-83 22-106 (169)
197 1udx_A The GTP-binding protein 97.5 0.0002 7E-09 60.9 6.6 102 74-181 205-327 (416)
198 2f9l_A RAB11B, member RAS onco 97.4 0.00063 2.2E-08 51.0 7.6 105 73-179 53-168 (199)
199 3l2o_B F-box only protein 4; s 97.3 0.00024 8.1E-09 57.8 4.4 83 93-177 209-306 (312)
200 4fn5_A EF-G 1, elongation fact 97.2 0.00013 4.4E-09 66.0 2.8 58 74-134 85-152 (709)
201 3lxw_A GTPase IMAP family memb 97.2 8.7E-05 3E-09 58.4 1.3 107 72-180 68-209 (247)
202 1oix_A RAS-related protein RAB 97.1 0.0012 4.1E-08 49.3 6.5 102 74-177 78-190 (191)
203 3t34_A Dynamin-related protein 97.1 0.00023 7.8E-09 59.0 2.6 98 73-172 135-254 (360)
204 1azs_C GS-alpha; complex (lyas 97.0 0.00031 1.1E-08 59.5 3.3 105 74-178 217-384 (402)
205 3ohm_A Guanine nucleotide-bind 97.0 0.00042 1.4E-08 57.1 3.7 105 74-178 167-317 (327)
206 2rcn_A Probable GTPase ENGC; Y 97.0 0.0011 3.7E-08 55.3 6.1 53 119-173 160-213 (358)
207 4fid_A G protein alpha subunit 96.9 0.00049 1.7E-08 57.0 3.5 105 73-177 160-326 (340)
208 1nrj_B SR-beta, signal recogni 96.9 3.4E-05 1.2E-09 58.8 -3.6 92 72-165 53-170 (218)
209 3r7w_B Gtpase2, GTP-binding pr 96.5 0.0015 5.2E-08 53.9 3.1 100 73-175 45-170 (331)
210 2qag_A Septin-2, protein NEDD5 96.4 0.0018 6.1E-08 53.8 3.3 54 119-175 174-229 (361)
211 2qnr_A Septin-2, protein NEDD5 96.3 0.0013 4.5E-08 53.2 2.1 54 120-178 156-213 (301)
212 3kl4_A SRP54, signal recogniti 96.0 0.0066 2.3E-07 51.8 4.6 143 3-167 116-278 (433)
213 2v3c_C SRP54, signal recogniti 95.8 2.8E-05 9.6E-10 66.5 -10.6 102 72-177 179-309 (432)
214 1n0u_A EF-2, elongation factor 95.8 0.0011 3.9E-08 61.0 -0.8 60 73-132 97-163 (842)
215 2qag_C Septin-7; cell cycle, c 95.3 0.0029 1E-07 53.7 -0.1 57 119-179 167-227 (418)
216 1wxq_A GTP-binding protein; st 94.8 0.004 1.4E-07 52.5 -0.5 49 119-171 214-262 (397)
217 1h65_A Chloroplast outer envel 94.1 0.017 5.7E-07 45.6 1.6 63 72-134 85-169 (270)
218 2ged_A SR-beta, signal recogni 93.9 0.016 5.3E-07 42.6 1.1 73 72-146 89-181 (193)
219 1j8m_F SRP54, signal recogniti 93.8 0.019 6.5E-07 46.4 1.4 91 71-170 178-282 (297)
220 1tq4_A IIGP1, interferon-induc 91.8 0.15 5.2E-06 43.1 4.3 107 74-181 120-255 (413)
221 1np6_A Molybdopterin-guanine d 90.8 0.41 1.4E-05 35.4 5.3 25 2-26 24-50 (174)
222 3def_A T7I23.11 protein; chlor 90.8 0.39 1.3E-05 37.4 5.5 63 72-134 82-166 (262)
223 2xxa_A Signal recognition part 90.8 0.25 8.6E-06 41.9 4.6 118 3-134 119-255 (433)
224 1zu4_A FTSY; GTPase, signal re 88.0 0.11 3.8E-06 42.3 0.4 90 71-169 189-296 (320)
225 1ni3_A YCHF GTPase, YCHF GTP-b 86.7 1.1 3.8E-05 37.5 5.8 58 119-177 224-305 (392)
226 2dby_A GTP-binding protein; GD 86.4 0.84 2.9E-05 37.8 4.8 49 120-170 202-253 (368)
227 4a9a_A Ribosome-interacting GT 83.8 1.8 6.3E-05 35.9 5.7 49 121-178 251-299 (376)
228 2qag_B Septin-6, protein NEDD5 80.6 0.59 2E-05 39.6 1.6 60 98-160 152-217 (427)
229 3ec1_A YQEH GTPase; atnos1, at 79.3 0.29 9.9E-06 40.5 -0.7 91 74-167 212-319 (369)
230 2ohf_A Protein OLA1, GTP-bindi 73.6 0.58 2E-05 39.3 -0.4 100 73-180 85-196 (396)
231 1jal_A YCHF protein; nucleotid 68.2 9 0.00031 31.6 5.6 57 119-177 199-277 (363)
232 2px0_A Flagellar biosynthesis 64.6 2.7 9.1E-05 33.6 1.7 86 72-166 181-278 (296)
233 2ohf_A Protein OLA1, GTP-bindi 62.9 6 0.00021 33.1 3.6 45 118-162 221-267 (396)
234 2xj4_A MIPZ; replication, cell 60.9 4.9 0.00017 31.4 2.6 34 72-106 102-137 (286)
235 3of5_A Dethiobiotin synthetase 45.9 9.6 0.00033 29.0 2.0 81 72-157 109-206 (228)
236 3h2y_A GTPase family protein; 42.7 2.1 7.4E-05 35.2 -2.3 67 96-165 246-316 (368)
237 1ko7_A HPR kinase/phosphatase; 39.7 14 0.00049 29.8 2.2 50 121-178 81-130 (314)
238 3kjh_A CO dehydrogenase/acetyl 39.6 14 0.00047 27.5 2.0 59 71-130 129-194 (254)
239 2jvf_A De novo protein M7; tet 38.8 38 0.0013 21.1 3.6 39 142-180 38-76 (96)
240 3sop_A Neuronal-specific septi 38.7 16 0.00055 28.5 2.3 50 95-147 112-166 (270)
241 1byi_A Dethiobiotin synthase; 35.6 20 0.00069 26.2 2.4 12 72-83 107-118 (224)
242 1cp2_A CP2, nitrogenase iron p 30.0 13 0.00046 28.2 0.5 35 72-106 114-152 (269)
243 3pg5_A Uncharacterized protein 29.9 22 0.00075 28.8 1.8 32 73-105 153-186 (361)
244 3end_A Light-independent proto 29.5 33 0.0011 26.6 2.8 34 72-106 155-191 (307)
245 2afh_E Nitrogenase iron protei 25.4 19 0.00066 27.8 0.7 35 72-106 117-155 (289)
246 3la6_A Tyrosine-protein kinase 25.3 21 0.00072 28.0 0.9 62 72-133 200-268 (286)
247 3k9g_A PF-32 protein; ssgcid, 24.8 26 0.00087 26.6 1.3 56 72-130 143-208 (267)
248 3q9l_A Septum site-determining 21.4 27 0.00093 26.1 0.8 33 73-106 113-147 (260)
249 4dzz_A Plasmid partitioning pr 20.4 56 0.0019 23.2 2.3 60 72-133 74-144 (206)
250 3iqw_A Tail-anchored protein t 20.3 56 0.0019 26.2 2.5 21 63-83 128-148 (334)
No 1
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.80 E-value=3.1e-20 Score=144.54 Aligned_cols=168 Identities=28% Similarity=0.386 Sum_probs=116.8
Q ss_pred HHHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCcEEEEe
Q 029893 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (186)
Q Consensus 2 ~~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIE 80 (186)
.+++..+....++++|.+|++.++|...+...+. .++.+.+|| ||.. .+.+. +.+. ...++|++++|
T Consensus 48 ~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~---~~~~---~~~~~d~iiid 115 (221)
T 2wsm_A 48 ERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI----KAEAISTGKECHLD--AHMIY---HRLK---KFSDCDLLLIE 115 (221)
T ss_dssp HHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTC----EEEECCCTTCSSCC--HHHHH---TTGG---GGTTCSEEEEE
T ss_pred HHHHHHhccCCeEEEEecCCCCchhHHHHHhCCC----cEEEecCCceeecc--cHHHH---HHHH---hcCCCCEEEEe
Confidence 3455555444789999999998899998886554 578888888 6532 11111 2222 34589999999
Q ss_pred cCCCeeEEeeeee-cCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEe
Q 029893 81 SGGDNLAANFSRE-LADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (186)
Q Consensus 81 tsG~~l~~~~~~~-~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~S 159 (186)
|+|. +..|..+. .++.+++|+|++.+......+..+...+.++|+||+|+.+......+++.+.+++.+|.++++++|
T Consensus 116 t~G~-~~~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~S 194 (221)
T 2wsm_A 116 NVGN-LICPVDFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMD 194 (221)
T ss_dssp EEEB-SSGGGGCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECB
T ss_pred CCCC-CCCCchhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEee
Confidence 9992 22232221 357789999998875433233333567899999999997531135667777788778889999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhc
Q 029893 160 VKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 160 a~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
|++|.|++++++++.+.+..+..
T Consensus 195 a~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 195 LKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp TTTTBTHHHHHHHHHHHHC----
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999987765544
No 2
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.77 E-value=7.4e-19 Score=147.25 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=106.6
Q ss_pred HHHHHHHhc-CCcEEEEEcccCCch-------hHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc
Q 029893 2 LALCKFLRD-KYSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g~~i-------D~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~ 72 (186)
.+++..+.. ++|++++.+|++... |..++...+..+...++++.++| ||.++ ....+++ ...+..
T Consensus 97 ~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~t~d~i-~~~~~~ 170 (355)
T 3p32_A 97 EALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT-----RATRETV-VLLEAA 170 (355)
T ss_dssp HHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH-----HHHHHHH-HHHHHT
T ss_pred HHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh-----HHHHHHH-HHHhhC
Confidence 355555654 599999999999433 33333322222333677888888 76541 2222555 344467
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHH----h
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDAL----R 148 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~----~ 148 (186)
++|++||||+|+.-........+|++++|+|+..++.........++.++++|+||+|+.+. .......+.++ .
T Consensus 171 ~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~--~~~~~~~~~l~~~l~~ 248 (355)
T 3p32_A 171 GFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHH--KEARLAARELSAAIRL 248 (355)
T ss_dssp TCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGH--HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcCh--hHHHHHHHHHHHHHhh
Confidence 89999999999432111112468999999999877654332333456799999999999765 33333333333 2
Q ss_pred hCC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 149 MRD-----GGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 149 ~~p-----~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..| ..|++++||++|+|+++|++++.++++..
T Consensus 249 ~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 249 IYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 322 47999999999999999999999988763
No 3
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.76 E-value=1.9e-18 Score=134.84 Aligned_cols=167 Identities=32% Similarity=0.456 Sum_probs=117.4
Q ss_pred HHHHHHhcCCcEEEEEcccCCchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhcCCcEEEEec
Q 029893 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCES 81 (186)
Q Consensus 3 ~~~~~l~~~~~vaVi~nd~g~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEt 81 (186)
+++..+....++++|.+||+.++|...+...+. .++.+.+|| || +. ..|. .+.+..+ ...++|++++||
T Consensus 57 ~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~~~~~~~~~~~~-l~-~~~~---~~~~~~l-~~~~~d~~~id~ 126 (226)
T 2hf9_A 57 KLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKECH-LD-AHLV---GHALEDL-NLDEIDLLFIEN 126 (226)
T ss_dssp HHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTC----EEEEEECTTCSS-CC-HHHH---HHHHTTS-CGGGCSEEEEEC
T ss_pred HHHHHhccCCeEEEEECCCCCCccHHHHHhcCC----cEEEecCCceEe-cc-HHHH---HHHHHHH-hcCCCCEEEEeC
Confidence 445544444789999999998899998887654 678888888 55 31 1121 1333333 235789999999
Q ss_pred CCCeeEEeeeee-cCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEec
Q 029893 82 GGDNLAANFSRE-LADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 160 (186)
Q Consensus 82 sG~~l~~~~~~~-~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa 160 (186)
+|. +..+.++. ..+..+.++|+..+...+..+..++..|+++|+||+|+.+......+.+.+.+++.++.++++++||
T Consensus 127 ~g~-i~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 205 (226)
T 2hf9_A 127 VGN-LICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSL 205 (226)
T ss_dssp CSC-SSGGGGCCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCT
T ss_pred CCC-ccCcchhhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 993 22232232 2466788899766554444444456779999999999975421246667777777778889999999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 029893 161 KHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 161 ~~g~gi~~l~~~i~~~~~~~ 180 (186)
++|.|++++++++.+.+..+
T Consensus 206 ~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 206 KTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCTTHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999887654
No 4
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=138.96 Aligned_cols=170 Identities=17% Similarity=0.144 Sum_probs=92.1
Q ss_pred HHHHHHHhc-CCcEEEEEcccC-Cch------hHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhhhhc
Q 029893 2 LALCKFLRD-KYSLAAVTNDIF-TKE------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g-~~i------D~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~~~~ 72 (186)
++++..+.. +.+++|+.+|++ ... |..+|...+..+...+...+++| ||..+ ....+++..+ ...
T Consensus 92 n~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t-----r~~~~~~~~~-~~~ 165 (349)
T 2www_A 92 EYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT-----RTTNEAILLC-EGA 165 (349)
T ss_dssp HHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C-----TTHHHHHHHH-HHT
T ss_pred HHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch-----HHHHHHHHhh-ccC
Confidence 445555554 389999999999 454 44445444332222455566777 66432 2222344322 357
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccH----HHHHHHHHh
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL----AVMERDALR 148 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~----~~~~~~l~~ 148 (186)
++|++|+||+|+.-........+|++++|+|++.++.........++.++++|+||+|+.+. ... ..+...++.
T Consensus 166 ~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~--~~~~~~~~~l~~~l~~ 243 (349)
T 2www_A 166 GYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLI--VPARRIQAEYVSALKL 243 (349)
T ss_dssp TCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGH--HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCc--hhHHHHHHHHHHHHHh
Confidence 89999999999421110112357999999999876543211113356789999999999754 222 223333333
Q ss_pred hCC-----CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 149 MRD-----GGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 149 ~~p-----~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+| ..+++++||++|+|+++|+++|.++++.
T Consensus 244 ~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 244 LRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 333 4689999999999999999999987764
No 5
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.58 E-value=1.9e-16 Score=130.73 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=96.1
Q ss_pred cCCcEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCcchhHhhh---hhc--CCcEEEEecC
Q 029893 10 DKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELS---NLF--KADLLLCESG 82 (186)
Q Consensus 10 ~~~~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~~~l~~l~---~~~--~~D~iiIEts 82 (186)
.++|+|||+||+| +++|+..+...+ +.+++|+||| ||+. |+|+. .++..+. +.. .+|++++|++
T Consensus 29 ~~~~~aVi~~d~G~i~idg~~l~~~~----~~~~el~~gCicc~~--~~~~~---~~l~~l~~~~q~~~~~~~~~v~E~~ 99 (318)
T 1nij_A 29 HGYKIAVIENEFGEVSVDDQLIGDRA----TQIKTLTNGCICCSR--SNELE---DALLDLLDNLDKGNIQFDRLVIECT 99 (318)
T ss_dssp CCCCEEEECSSCCSCCEEEEEECTTS----CEEEEETTSCEEECT--TSCHH---HHHHHHHHHHHHTSCCCSEEEEEEE
T ss_pred CCCcEEEEEecCcccCccHHHHhCCC----CCEEEECCCceEEcc--cHHHH---HHHHHHHhHHhcCCCCCCEEEEeCC
Confidence 4589999999999 899988776432 3789999999 9985 65554 4555552 333 3599999999
Q ss_pred CCeeEEe----e--eee-----cCceEEEEEeCCCCCCCccC---CCCCCCceeEEEEecCCCCCcccccHHHHHHHHHh
Q 029893 83 GDNLAAN----F--SRE-----LADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGADLAVMERDALR 148 (186)
Q Consensus 83 G~~l~~~----~--~~~-----~ad~~v~VvDa~~~~~~~~~---~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~ 148 (186)
|+..-.+ + ... ..+-++.++|+.+....... ...|...|+++++||.|+.++ . +.+.+.+++
T Consensus 100 ~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~de--~--~~l~~~l~~ 175 (318)
T 1nij_A 100 GMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE--A--EKLHERLAR 175 (318)
T ss_dssp TTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTCSC--T--HHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccCCH--H--HHHHHHHHH
Confidence 9421011 1 010 12456889998765332211 123466799999999999966 3 677788888
Q ss_pred hCCCCCEEEEec
Q 029893 149 MRDGGPFIFAQV 160 (186)
Q Consensus 149 ~~p~a~i~~~Sa 160 (186)
++|.+.++.+|.
T Consensus 176 l~~~~~ii~~sh 187 (318)
T 1nij_A 176 INARAPVYTVTH 187 (318)
T ss_dssp HCSSSCEEECCS
T ss_pred hCCCCeEEEecc
Confidence 899999998774
No 6
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.49 E-value=1.9e-14 Score=119.81 Aligned_cols=173 Identities=19% Similarity=0.186 Sum_probs=91.0
Q ss_pred HHHHHHhc-CCcEEEEEcccC-CchhHHHHHhcCCCCcCceEeccCCC-cccCCcccccccCc-chhHhh--hhhcCCcE
Q 029893 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL-GPLEEL--SNLFKADL 76 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~~Gc-cc~l~~r~d~~~~~-~~l~~l--~~~~~~D~ 76 (186)
.++..+.. +.+++++.+|++ +..++.++..... .+......+|+ ||..+ +..+.... +.+..+ ....++++
T Consensus 75 ~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~--~~~~~~~~~~~i~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~i 151 (341)
T 2p67_A 75 AFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTR--MNDLARAEAAFIRPVPS-SGHLGGASQRARELMLLCEAAGYDV 151 (341)
T ss_dssp HHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC------CHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHhcCCeEEEEeecCCcCCCCcceecccch--HHhhccCCCceeecCcc-ccccchhHHHHHHHHHHhhccCCCE
Confidence 34444443 589999999999 5656555432110 01112224566 55421 11011111 112222 12468999
Q ss_pred EEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHH----HHHHHHhhCC-
Q 029893 77 LLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV----MERDALRMRD- 151 (186)
Q Consensus 77 iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~----~~~~l~~~~p- 151 (186)
+||||+|+.-........+|.+++|+|+..++........+...+.++|+||+|+.+. ..... +.+.++..++
T Consensus 152 ~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~l~~~l~~~~~~ 229 (341)
T 2p67_A 152 VIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNH--TNVAIARHMYESALHILRRK 229 (341)
T ss_dssp EEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCH--HHHHHHHHHHHHHHHHSCCS
T ss_pred EEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCCh--HHHHHHHHHHHHHHHhcccc
Confidence 9999999421001112457999999999876542111111234589999999999865 23332 2222323332
Q ss_pred ----CCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 152 ----GGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 152 ----~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..+++++||++|.|++++++++.+..+.+
T Consensus 230 ~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~ 262 (341)
T 2p67_A 230 YDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL 262 (341)
T ss_dssp BTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999877643
No 7
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=3.4e-13 Score=112.17 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=94.6
Q ss_pred HHHHHhc-CCcEEEEEcccC-CchhHHHH---HhcCCCCcC-ceEeccCCCcccCCcccccccCcchhHhhhhhcCCcEE
Q 029893 4 LCKFLRD-KYSLAAVTNDIF-TKEDGEFL---MRNGALPEE-RIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 77 (186)
Q Consensus 4 ~~~~l~~-~~~vaVi~nd~g-~~iD~~~i---~~~~~~~~~-~~~~l~~Gccc~l~~r~d~~~~~~~l~~l~~~~~~D~i 77 (186)
++..+.. +.+++|+.+|++ ...++.+. .+.+.++.+ ....-....||++ ++......+++. +.+..++|++
T Consensus 75 l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l--~G~tr~~~e~~~-~~~~~~~~~i 151 (337)
T 2qm8_A 75 LGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL--GGVAAKTRETML-LCEAAGFDVI 151 (337)
T ss_dssp HHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH--HHHHHHHHHHHH-HHHHTTCCEE
T ss_pred HHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccc--cchHHHHHHHHH-HHhcCCCCEE
Confidence 3344443 478999999987 33211100 111211111 1111112336765 222222223332 2345799999
Q ss_pred EEecCCCeeEEeeeeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccH----HHHHHHHHhhCC--
Q 029893 78 LCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL----AVMERDALRMRD-- 151 (186)
Q Consensus 78 iIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~----~~~~~~l~~~~p-- 151 (186)
||||+|+.-........+|++++|+|+..++..........+.++++++||+|+.+.. ... +++...+...+|
T Consensus 152 liDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~-~~s~~~~~~l~~a~~l~~~~~ 230 (337)
T 2qm8_A 152 LVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGE-RRASAAASEYRAALHILTPPS 230 (337)
T ss_dssp EEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCH-HHHHHHHHHHHHHHTTBCCSB
T ss_pred EEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCch-hHHHHHHHHHHHHHHhccccc
Confidence 9999994321111123579999999987654321111122356899999999987531 111 222222222332
Q ss_pred ---CCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 152 ---GGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 152 ---~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..+++++||++|.|+++|++.|.++++..
T Consensus 231 ~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~ 262 (337)
T 2qm8_A 231 ATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL 262 (337)
T ss_dssp TTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999887643
No 8
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.37 E-value=9.5e-14 Score=110.37 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCeeEEee---------eeecCceEEEEEeCCCCCCCccCC---------CCCCCceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDNLAANF---------SRELADYIIYIIDVSGGDKIPRKG---------GPGITQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~---------~~~~ad~~v~VvDa~~~~~~~~~~---------~~~~~~adiivlNK~Dl~~~ 134 (186)
++|++||||+|..-..+. .+.. +++++++|+.......... ..+...+.++|+||+|+.+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 589999999993100000 1223 7789999987643321110 11234688999999999865
Q ss_pred ccccHHHHHH----------H------------------HHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 135 IGADLAVMER----------D------------------ALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 135 ~~~~~~~~~~----------~------------------l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.+.+.+.+ . +++.++..+++++||++|+|+++|++++.+.++...
T Consensus 187 --~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 187 --EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp --HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred --ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 32222221 1 234456678999999999999999999999887654
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.11 E-value=5.7e-11 Score=97.43 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCcEEEEecCCCeeEE-------------eeeeecCceEEEEEeCCCCCCCcc-----CCCCCCCceeEEEEecCCCC-C
Q 029893 73 KADLLLCESGGDNLAA-------------NFSRELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLA-S 133 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~-------------~~~~~~ad~~v~VvDa~~~~~~~~-----~~~~~~~~adiivlNK~Dl~-~ 133 (186)
+..++|++|+|..-.. ...+..+|++++|+|++++..... ........+.++|+||+|+. +
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP 137 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC
Confidence 7889999999942100 011235799999999987643211 11122456899999999998 4
Q ss_pred cccccHHHHHHHHHhhC-CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 134 AIGADLAVMERDALRMR-DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~-p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
. .......+.+.+.. +..+++++||++|.|++++++++.+++++.
T Consensus 138 ~--~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 138 A--KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp G--GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred H--HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 4 45555556666655 678999999999999999999999887653
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.98 E-value=3.5e-10 Score=87.23 Aligned_cols=108 Identities=10% Similarity=0.000 Sum_probs=71.2
Q ss_pred cCCcEEEEecCCCeeE-------E-------ee--eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCC
Q 029893 72 FKADLLLCESGGDNLA-------A-------NF--SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDL 131 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-------~-------~~--~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl 131 (186)
.+..+.|++|+|..-. . .+ ....+|++++|+|+.++..... ........+.++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 4688999999994210 0 00 0112578999999987543211 1111244689999999999
Q ss_pred CCcccccH----HHHHHHHHhh-----CCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 132 ASAIGADL----AVMERDALRM-----RDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 132 ~~~~~~~~----~~~~~~l~~~-----~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.+. .+. +.+.+.+... .+..+++++||++|.|+++++++|.+.++...
T Consensus 157 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 157 LTR--QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp SCH--HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCh--hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 876 333 3333444443 35679999999999999999999998876543
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.96 E-value=6.1e-10 Score=84.08 Aligned_cols=111 Identities=17% Similarity=0.060 Sum_probs=74.3
Q ss_pred hcCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc------CCCCC----------CCceeEEEEecCCC
Q 029893 71 LFKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR------KGGPG----------ITQADLLVINKTDL 131 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~------~~~~~----------~~~adiivlNK~Dl 131 (186)
..+..+.|++|+|..-- ....+..+|.+++|+|+++...... ..... -..+.++|+||+|+
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 35678999999994110 0112345799999999988643110 00000 15688999999999
Q ss_pred CCcccccHHHHHHHHHh----hCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhcc
Q 029893 132 ASAIGADLAVMERDALR----MRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGK 183 (186)
Q Consensus 132 ~~~~~~~~~~~~~~l~~----~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~~ 183 (186)
.+. ...+++.+.+.. .....+++++||++|.|++++++++.+.+...+++
T Consensus 140 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 140 AGA--KTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp TTC--CCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred CCC--CCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 876 444444444321 12356899999999999999999999888766543
No 12
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.92 E-value=6e-09 Score=77.11 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=67.9
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--C----------CCCCCCceeEEEEecCCCCCccc-
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--K----------GGPGITQADLLVINKTDLASAIG- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~----------~~~~~~~adiivlNK~Dl~~~~~- 136 (186)
...+.+++|+|..-- ....+..+|.+++|+|+++...... . .......+.++|+||+|+.+...
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 136 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI 136 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc
Confidence 567899999993110 1112345799999999987532110 0 01113457899999999965411
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
...+...+..+ ..+..+++++||++|.|++++++++.+.+...
T Consensus 137 v~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 137 VSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp SCHHHHHHHHH-HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 12333333333 24567999999999999999999998877654
No 13
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.91 E-value=4.8e-09 Score=76.73 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=66.1
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+.+.+.+|+|..- .....+..+|.+++|+|+++..... ......-..+.++|+||+|+.++.....
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 126 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 126 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH
Confidence 456788999999321 0112234579999999998653211 0111122457899999999986532233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+......+.. ..+++++||++|.|++++++++.+.+...
T Consensus 127 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 127 DEGRACAVVF--DCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHT--TCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 3333333333 36999999999999999999999887654
No 14
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.90 E-value=3e-09 Score=78.39 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=67.9
Q ss_pred CCcEEEEecCCCeeEEe-----eeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLAAN-----FSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~-----~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
...+.+++|+|..-... ..+..+|.+++|+|+++..... ......-..+.++|+||+|+.+.....
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~ 130 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS 130 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccC
Confidence 46788999999321001 1123479999999998743211 011111245789999999998652222
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.++.....+.. ..+++++||++|.|++++++++.+.+...+.
T Consensus 131 ~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 131 VEEGRACAVVF--DCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHH--TSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 33333333333 3589999999999999999999988876555
No 15
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.90 E-value=7.1e-09 Score=77.80 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++|+|..- . ....+..+|.+++|+|+++...... .....-..+.++|+||+|+.+. ...+
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 142 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEA 142 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHH
Confidence 67889999999321 0 1112345799999999987643210 1111134689999999999876 4444
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
++.+.+... ....+++++||++|.|++++++++.+.+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 554443311 1234799999999999999999999887654
No 16
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=5e-09 Score=78.61 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=71.2
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|..--.. ..+..+|.+++|+|+++...... .....-..+.++|+||+|+.+. ...
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 135 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTV 135 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCH
Confidence 357899999999311011 12345799999999988643211 1111134688999999999875 445
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+++.+.+... ....+++++||++|.|++++++++.+..+..
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 136 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred HHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 5555554321 2245899999999999999999998876543
No 17
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.89 E-value=9.3e-09 Score=76.45 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++|+|..--.. ..+..+|.+++|+|+++...... ........+.++|+||+|+.++ ...+
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 138 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSAS 138 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHH
Confidence 57889999999311011 11234689999999987643210 1111235689999999999876 4445
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++.+.+... ....+++++||++|.|++++++++.+.++.
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 139 EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 554444321 123479999999999999999999987754
No 18
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.88 E-value=6e-09 Score=76.43 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc------CCCC---CCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~------~~~~---~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++|+|..-- ....+..+|.+++|+|+++...... .... ....+.++|+||+|+.+. ....
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 127 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSS 127 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHH
Confidence 678899999993210 1112345799999999988643211 0101 134588999999999876 4445
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++...+... ....+++++||++|.|++++++++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 555444321 123489999999999999999999887753
No 19
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.87 E-value=4.4e-09 Score=80.14 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++|+|...... ..+..+|.+++|+|+++...... ........+.++|+||+|+.+. ...+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~ 145 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEE 145 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHH
Confidence 47889999999321111 12345799999999987643110 0111134578999999999864 4455
Q ss_pred HHHHHHHhhC---------------CCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 141 VMERDALRMR---------------DGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 141 ~~~~~l~~~~---------------p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
++.+.++... ...+++++||++|+|++++++++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 5555554321 34589999999999999999998753
No 20
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.87 E-value=3.7e-09 Score=79.07 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=72.0
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.+++|+|..-- ....+..+|.+++|+|+++...... ........+.++|+||+|+.++ ...
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 137 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSC 137 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCH
Confidence 3678899999993100 1112345799999999987643211 1111134688999999999876 445
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++.+.+... ....+++++||++|.|++++++++.+.+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5554444311 234589999999999999999999887764
No 21
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.86 E-value=2.9e-09 Score=80.16 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---------CCCCC--CCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPG--ITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~--~~~adiivlNK~Dl~~~~~~~ 138 (186)
+..+.|++|+|..- . ....+..+|.+++|+|+++...... ..... -..+.++|+||+|+.+. ..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~ 143 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VT 143 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CC
Confidence 57899999999310 0 1112345799999999987532110 11111 34688999999999876 45
Q ss_pred HHHHHHHHH--hhC-CCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 139 LAVMERDAL--RMR-DGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 139 ~~~~~~~l~--~~~-p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.+++.+.++ .+. ...+++++||++|.|++++++++.+.+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 144 SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence 555555553 221 3468999999999999999999998876554
No 22
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=2.5e-09 Score=91.96 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCe----e---EE------e-eeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDN----L---AA------N-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~----l---~~------~-~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
+..+.|++|+|+. . .. + ..++.+|++++|+|++++...... +......+.++|+||||+.+.
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4578899999941 0 00 1 122457999999999886432211 111235689999999999875
Q ss_pred ccccHHHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 135 IGADLAVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.....+++.+.+++.. ++++++++||++|.|++++++++.+.++.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 322 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 3234456666666553 46899999999999999999999998877654
No 23
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.84 E-value=3.8e-09 Score=78.68 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=62.3
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.|++|+|..--. ...+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.++.....+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 135 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKER 135 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHH
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHH
Confidence 4678899999931101 112345799999999987532110 010 01245789999999998642223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..+..+..+ .+++++||++|.|++++++++.+.+...
T Consensus 136 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 136 GEKLALDYG--IKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHT--CEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 444444443 5899999999999999999998766543
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=8e-09 Score=76.51 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+. .....+.++|+||+|+.++.....+.
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 138 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRED 138 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHH
Confidence 46788999999321 0 1112345799999999987532110 000 01345889999999998653223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
..+..+.. ..+++++||++|.|++++++++.+.+...+
T Consensus 139 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 139 GEKLAKEY--GLPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 44444444 358999999999999999999998876543
No 25
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.83 E-value=2.5e-09 Score=80.98 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=68.5
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++|+|.... .+..+..+|.+++|+|+++...... .....-..+.++|+||+|+.+. ...+
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~ 143 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEA 143 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHH
Confidence 478899999994210 1112345799999999988643110 1111134578999999999875 4455
Q ss_pred HHHHHHHhh----------CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 141 VMERDALRM----------RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 141 ~~~~~l~~~----------~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++.+.++.. ....+++++||++|.|++++++++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp HHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred HHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 555544432 13458999999999999999999865
No 26
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.82 E-value=6.7e-10 Score=90.87 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=71.3
Q ss_pred hcCCcEEEEecCCCeeE-----------EeeeeecCceEEEEEeCCCCCCCccCC----CCCC--CceeEEEEecCCCCC
Q 029893 71 LFKADLLLCESGGDNLA-----------ANFSRELADYIIYIIDVSGGDKIPRKG----GPGI--TQADLLVINKTDLAS 133 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~-----------~~~~~~~ad~~v~VvDa~~~~~~~~~~----~~~~--~~adiivlNK~Dl~~ 133 (186)
..+..++|++|+|..-. ....+..+|.+++|+|++++......+ .... ..+.++|+||+|+.+
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 34678999999994210 001234689999999998764321111 1112 468999999999987
Q ss_pred cccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 134 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
. .. . +.+.++++.+..+++++||++|.|++++++++.+.++
T Consensus 132 ~--~~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 132 Y--PE-E-AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp S--HH-H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred c--hH-H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 5 33 0 2333444456678999999999999999999987654
No 27
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.82 E-value=7.9e-09 Score=75.40 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=69.2
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|..--. ...+..+|.+++|+|+++...... .....-..+.++|+||+|+.++ ...
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 119 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNA 119 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCH
Confidence 46789999999931100 112345799999999987643210 0011124588999999999876 444
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+++...+... ....+++++||++|.|++++++++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 4444443221 12347999999999999999999987664
No 28
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.82 E-value=4.6e-09 Score=77.69 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
+..+.+++|+|..- . ....+..+|.+++|+|++++..... ........+.++|+||+|+.+. ..+++...
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~ 130 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQE 130 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHH
Confidence 45678999999310 0 1112345799999999877532110 0111234578999999999864 22333334
Q ss_pred HHhhC-------CCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 146 ALRMR-------DGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 146 l~~~~-------p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
++... ...+++++||++|.|++++++++.+.....+-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 131 LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 43322 12489999999999999999999988776654
No 29
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.81 E-value=3.5e-09 Score=78.33 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=71.7
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCCC-----CCCceeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGGP-----GITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~-----~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
...+.|++|+|..-. ....+..+|.+++|+|+++...... .+.. .-..+.++|+||+|+.+.........
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 136 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDA 136 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHH
Confidence 367899999993110 1112345799999999987532110 0100 01357899999999986532233444
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
....+.. ..+++++||++|.|++++++++.+.+...+.
T Consensus 137 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 137 YKFAGQM--GIQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 4444444 3599999999999999999999988776654
No 30
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.81 E-value=1.2e-08 Score=76.57 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+++.|++|+|..- . ....+..+|.+++|+|+....... . .+...-..+.++|+||+|+.+.. ...+
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~ 146 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VDTK 146 (190)
T ss_dssp EEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHH
T ss_pred EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CCHH
Confidence 56799999999321 0 112234579999999998753211 0 01111245789999999998631 2334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhcc
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGK 183 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~~ 183 (186)
...+..+..+ .+++++||++|.|++++++++.+.+...+.+
T Consensus 147 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 147 QAHELAKSYG--IPFIETSAKTRQGVEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4444444443 5899999999999999999999988776653
No 31
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.81 E-value=1.1e-08 Score=88.69 Aligned_cols=102 Identities=23% Similarity=0.209 Sum_probs=66.2
Q ss_pred cCCcEEEEecCCCee----EE-------eeeeecCceEEEEEeCCCCCCCc-----cCCCC-CCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDNL----AA-------NFSRELADYIIYIIDVSGGDKIP-----RKGGP-GITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l----~~-------~~~~~~ad~~v~VvDa~~~~~~~-----~~~~~-~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|..- .. ...+..+|++++|+|++++.... ..+.. .-..+.++|+||+|+.+.
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAAN 358 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTT
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCc
Confidence 467899999999421 00 11234579999999999875431 00100 014689999999999876
Q ss_pred ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 135 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..... +.+.+. +..+++++||++|.|++++++++.+.++
T Consensus 359 --~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 359 --ADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp --THHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred --cchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 33321 233332 1268999999999999999999999887
No 32
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.81 E-value=4.2e-09 Score=77.24 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC------CCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP------GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~------~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
..+.+.|++|+|..- . ....+..+|.+++|+|+++..... ..+.. .-..+.++|+||+|+.++.....+
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 132 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHH
Confidence 346788999999321 0 112234579999999998753211 01100 023477999999999864223344
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+..+..+.. ..+++++||++|.|++++++++.+.+.+
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 133 EAESYAESV--GAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 455444443 3689999999999999999999887653
No 33
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.81 E-value=3.5e-09 Score=79.42 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=72.8
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCC------C--ccCC-----CCCCCceeEEEEecCCCCCcc
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDK------I--PRKG-----GPGITQADLLVINKTDLASAI 135 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~------~--~~~~-----~~~~~~adiivlNK~Dl~~~~ 135 (186)
....+.|++|+|..-- .+..+..+|.+++|+|++++.. . ...+ ...-..+.++|+||+|+.+.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~- 150 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA- 150 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-
Confidence 3567899999993110 1112345799999999984311 0 0001 11134588999999999876
Q ss_pred cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 136 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 136 ~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
...++..+.++.. ...+++++||++|.|++++++++.+.+.....
T Consensus 151 -~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 151 -LPVEMVRAVVDPE-GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp -CCHHHHHHHHCTT-CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred -cCHHHHHHHHHhc-CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 5556666555543 22399999999999999999999887765443
No 34
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.80 E-value=2.9e-09 Score=79.79 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCeeE-------Eee------eee---cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDNLA-------ANF------SRE---LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~-------~~~------~~~---~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~ 132 (186)
+..+.+++|+|.... ..+ .+. .+|++++|+|++....... .+......+.++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 457889999993210 000 111 2388999999877543211 11122356899999999998
Q ss_pred CcccccHHHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 133 SAIGADLAVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++ .+.....+.+++. ....+++++||++|.|++++++++.+.+++
T Consensus 147 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 147 KM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred Ch--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 76 4444444444332 234699999999999999999999987653
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.80 E-value=9.3e-09 Score=75.37 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=69.2
Q ss_pred cCCcEEEEecCCCeeEE----eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCccccc
Q 029893 72 FKADLLLCESGGDNLAA----NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~----~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
..+.+.+++|+|..-.. ...+..+|.+++|+|+++...... .....-..+.++|+||+|+.+.....
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC
Confidence 35678899999942111 111234799999999987432110 01111245889999999998543233
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+...+..+.. ..+++++||++|.|++++++++.+.+..
T Consensus 129 ~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 129 LEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 34444444444 3599999999999999999999887654
No 36
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.79 E-value=1.2e-08 Score=77.50 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCC-------C---CCCCceeEEEEecCCCCCcccc
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKG-------G---PGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~-------~---~~~~~adiivlNK~Dl~~~~~~ 137 (186)
.+.+.|++|+|... . ....+..+|.+++|+|+++..... ..+ . .....+.++|+||+|+.+.. .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~ 134 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-V 134 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-S
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-c
Confidence 46789999999311 0 111234579999999998753211 000 0 01245789999999998531 2
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+......+ .....+++++||++|.|++++++++.+.+..
T Consensus 135 ~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 135 ATKRAQAWCY-SKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp CHHHHHHHHH-HTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-hcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3334433333 2346799999999999999999999876654
No 37
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.79 E-value=5e-09 Score=78.76 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..--. ...+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+......+.
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 143 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT 143 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHH
Confidence 4678999999931100 112345799999999987532110 010 01145789999999998763223333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.....+.. ..+++++||++|.|++++++++.+.+....
T Consensus 144 ~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 144 AKEFADSL--GIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHT--TCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 44333443 369999999999999999999988776543
No 38
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.79 E-value=4.9e-09 Score=79.74 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+.+.|++|+|..-- ....+..+|.+++|+|+++..... ......-..+.++|+||+|+.++.....
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 149 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQA 149 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCH
Confidence 4677899999993110 111234579999999998643211 0111122457899999999986532233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
.......+.. ..+++++||++|.|++++++++.+.+...+.
T Consensus 150 ~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 150 VEGKKLAESW--GATFMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHH--TCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 3444444444 3599999999999999999999887765443
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.79 E-value=5.8e-09 Score=75.94 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=69.1
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.|++|+|..--. ...+..+|.+++|+|+++...... .....-..+.++|+||+|+.++.....+
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE 130 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHH
Confidence 5688999999921000 011235799999999987432110 0111124578999999999765323344
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+.....+..+ .+++++||++|.|++++++++.+.+.
T Consensus 131 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 131 EAKNRADQWN--VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHT--CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 5555555543 58999999999999999999987664
No 40
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.78 E-value=5e-09 Score=81.49 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=67.9
Q ss_pred CCcEEEEecCCCee----EEe---e-----eeecCceEEEEEeCCCCCCCcc----CC----CCC-CCceeEEEEecCCC
Q 029893 73 KADLLLCESGGDNL----AAN---F-----SRELADYIIYIIDVSGGDKIPR----KG----GPG-ITQADLLVINKTDL 131 (186)
Q Consensus 73 ~~D~iiIEtsG~~l----~~~---~-----~~~~ad~~v~VvDa~~~~~~~~----~~----~~~-~~~adiivlNK~Dl 131 (186)
+..+.|++|+|..- ... + ....+|.+++|+|+++...... .+ ... -..+.++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 56789999999410 000 0 1234689999999987643220 01 111 14688999999999
Q ss_pred CCcccccH---HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 132 ASAIGADL---AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 132 ~~~~~~~~---~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.+...... +......+..++..+++++||++|.|++++++++.+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 86521111 12222233333346899999999999999999998876544
No 41
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.78 E-value=8.6e-09 Score=77.25 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=68.6
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc------CCCC---CCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~------~~~~---~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
+..+.+++|+|..--. ...+..+|.+++|+|+++...... .... .-..+.++|+||+|+.+. ...+
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~ 136 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APAS 136 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHH
Confidence 5778899999931100 112346899999999987543110 0111 134578999999999876 3444
Q ss_pred HHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++.+.+... ....+++++||++|.|++++++++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 444443211 123579999999999999999999876653
No 42
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.78 E-value=4.1e-09 Score=79.33 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=69.6
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc------CCCC---CCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~------~~~~---~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|..- . ....+..+|.+++|+|+++...... .... ....+.++|+||+|+.+. ...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 142 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDE 142 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCH
Confidence 467889999999310 0 0112245799999999987543210 0111 134578999999999876 344
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++.+.+... ....+++++||++|.|++++++++.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444443321 134579999999999999999999876543
No 43
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.77 E-value=1.3e-08 Score=84.05 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=69.7
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|-.--.. ..+..+|.+++|+|+++...... .....-..+.++|+||+|+.+. ...
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~ 284 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNA 284 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc--cCH
Confidence 467889999999210001 11235799999999987543211 0011124578999999999876 455
Q ss_pred HHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+++...+.... ...+++++||++|.|+++++++|.+.+..
T Consensus 285 ~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 285 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 55555543321 34579999999999999999999887653
No 44
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=77.53 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=70.6
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.|++|+|..--. ...+..+|.+++|+|+++..... ..+......+.++|+||+|+.++.....+
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 140 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE 140 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHH
Confidence 4678999999931100 11123579999999998753211 01112224578999999999865323345
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+..+..+..+ .+++++||++|.|++++++++.+.+..
T Consensus 141 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 141 EAKNRAEQWN--VNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5555555543 589999999999999999999876644
No 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.76 E-value=5.7e-09 Score=77.55 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.|++|+|..--. ...+..+|.+++|+|+++..... ..+......+.++|+||+|+.++.....+
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 144 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVE 144 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHH
Confidence 4678999999931100 11123579999999998743211 01111124578999999999765323345
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
+..+..+..+ .+++++||++|.|++++++++.+.+...+
T Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 145 EAKNRAEQWN--VNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 5555555443 58999999999999999999998776544
No 46
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.76 E-value=1.4e-08 Score=77.29 Aligned_cols=106 Identities=20% Similarity=0.138 Sum_probs=70.1
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- .....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+......+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 135 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDV 135 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 56899999999310 01122345799999999987532110 000 01235789999999998752223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.....+.. ..+++++||++|.|++++++++.+.+...
T Consensus 136 ~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 136 AKEFADAN--KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHT--TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 44444433 36899999999999999999998877644
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.76 E-value=5.8e-09 Score=77.54 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|+++...... ........+.++|+||+|+.++.....+
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 132 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 132 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHH
Confidence 467789999993210 1112235799999999987432110 1111224578999999999765323344
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
......+.. ..+++++||++|.|++++++++.+.+...++
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 133 EGKALAESW--NAAFLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHT--TCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 444444444 4689999999999999999999987765443
No 48
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.75 E-value=1.6e-08 Score=76.62 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=67.6
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|..--.. ..+..+|.+++|+|+++...... .....-..+.++|+||+|+.+. ...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 148 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPV 148 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCH
Confidence 467899999999311011 12345799999999987643211 0011124688999999999876 444
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+++.+.+... ....+++++||++|.|++++++++.+.+
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 5554443321 1234799999999999999999998754
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=2.4e-08 Score=74.79 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=71.0
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+.+.|++|+|..- . ....+..+|.+++|+|+++..... ..+...-..+.++|+||+|+.+.. ...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~ 140 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDR 140 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCH
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCH
Confidence 357889999999311 0 011234579999999998753211 111111245789999999996531 233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
+...+..+.. ..+++++||++|.|++++++++.+.+....
T Consensus 141 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 141 NEGLKFARKH--SMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 4444444443 368999999999999999999998876543
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.75 E-value=1.5e-08 Score=75.65 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--C-------CCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~-------~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+.|++|+|..-- ....+..+|.+++|+|+++...... . +......+.++|+||+|+.++.....+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 468899999993110 0112345799999999987532211 0 111134578999999999764222334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
...+..+..+ .+++++||++|.|++++++++.+.+...
T Consensus 149 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 149 EARELAEKYG--IPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp HHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4444444443 5899999999999999999998766543
No 51
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.75 E-value=1.9e-08 Score=74.87 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+-|++|+|..--. ...+..+|.+++|+|+++...... ........+.++|+||+|+.+......+
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~ 144 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHH
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHH
Confidence 3456679999931100 111234799999999987532110 1111234578999999999864323344
Q ss_pred HHHHHHHhhCCCCCEEEEecc-CCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVK-HGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~-~g~gi~~l~~~i~~~~~ 178 (186)
...+..+..+ .+++++||+ +|.|++++++++.+.+.
T Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 145 QGKEMATKYN--IPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHT--CCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 4555555553 789999999 99999999999988764
No 52
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.75 E-value=2.5e-08 Score=76.42 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=69.0
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc------cCCCC---CCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP------RKGGP---GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~------~~~~~---~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+.|++|+|..- . ....+..+|.+++|+|+++..... ..... .-..+.++|+||+|+.++.....+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 56789999999210 0 011234579999999998753211 01111 134578999999999764222334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...+..+.. ..+++++||++|.|++++++++.+.+..
T Consensus 163 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 163 QARELADKY--GIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHHHHHT--TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444443 3689999999999999999999876543
No 53
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.75 E-value=7.8e-09 Score=89.54 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=71.4
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|..- . ....+..+|++|+|+|+++...... .....-..+.++|+||+|+.+. ...
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~ 441 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKP 441 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCH
Confidence 467899999999311 0 1112345899999999988643211 0111124688999999999876 444
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
+++...+... ....+++++||++|+|+++++++|.+.+...+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 442 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC----
T ss_pred HHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 5554443321 134479999999999999999999987765544
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.74 E-value=2e-08 Score=75.60 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCeeEEee-eeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCC--cccccHH
Q 029893 73 KADLLLCESGGDNLAANF-SRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLAS--AIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~-~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~--~~~~~~~ 140 (186)
.+.+.|++|+|. ..+ .+..+|.+++|+|+++...... .+......+.++|+||+|+.+ ......+
T Consensus 66 ~~~l~i~Dt~G~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~ 142 (184)
T 3ihw_A 66 SYLLLIRDEGGP---PELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDS 142 (184)
T ss_dssp EEEEEEEECSSS---CCHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHH
T ss_pred EEEEEEEECCCC---hhhheecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHH
Confidence 456778999992 111 2345899999999987532111 111112457899999999953 2112334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
...+..+.. ...+++++||++|.|++++++++.+.+...++
T Consensus 143 ~~~~~~~~~-~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 143 RARKLSTDL-KRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHT-TTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHc-CCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 444444443 34689999999999999999999988776554
No 55
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.74 E-value=1.2e-08 Score=76.12 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc------CCCC---CCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~------~~~~---~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+..+.|++|+|..- . ....+..+|.+++|+|+++...... .... .-..+.++|+||+|+.+. ...
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 140 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTV 140 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCH
Confidence 357899999999311 0 0112345799999999988643211 0111 134578999999999875 344
Q ss_pred HHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 140 AVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 140 ~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+++.+.+... ....+++++||++|.|++++++++.+
T Consensus 141 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 141 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 4554443211 12348999999999999999999865
No 56
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.74 E-value=1.5e-08 Score=76.13 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=70.1
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCCC------CCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~------~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|++|+|..- . ....+..+|.+++|+|+++...... .+.. .-..+.++|+||+|+.++.....+
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE 148 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHH
Confidence 356889999999311 0 1112345799999999987532110 1100 124578999999999765222234
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...+..+..+ .+++++||++|.|++++++++.+.+.+
T Consensus 149 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 149 DGRRLADDLG--FEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444444443 589999999999999999999987764
No 57
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.73 E-value=7.8e-09 Score=79.61 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~~----- 136 (186)
.+.+.|++|+|..- . .+..+..+|.+++|+|+++...... .+... -..+.++|+||+|+.+...
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 160 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKL 160 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHH
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhh
Confidence 45788999999311 0 1122345799999999987532110 11110 1357899999999986510
Q ss_pred -------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 137 -------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 137 -------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
...++..+..+.. ...+++++||++|.|++++++++.+.+...+.
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 161 RRNGLEPVTYHRGQEMARSV-GAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp HHTTCCCCCHHHHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred cccccCcccHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 1112223333333 33489999999999999999999988876665
No 58
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.73 E-value=1.2e-08 Score=75.32 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=69.1
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
..+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+ ......+.++|+||+|+.++.....+
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 141 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 141 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence 356789999999310 0 0112345799999999987532110 00 01124578999999999764223344
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+..+..+.. ..+++++||++|.|++++++++.+.+
T Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 142 EAKQFAEEN--GLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 555555544 36899999999999999999988765
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.73 E-value=9.5e-09 Score=74.95 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=68.6
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+.+.|++|+|..-- ....+..+|.+++|+|+++...... .....-..+.++|+||+|+.++.....
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 128 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCH
Confidence 3567889999993110 0112235799999999987432110 011112457899999999976522223
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+......+. .+..+++++||++|.|++++++++.+.+
T Consensus 129 ~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 129 EQGQNLARQ-WCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHH-TTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 444444443 3467999999999999999999998765
No 60
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.73 E-value=3.2e-08 Score=73.02 Aligned_cols=104 Identities=9% Similarity=0.042 Sum_probs=69.0
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cC----------CCCCCCceeEEEEecCCCCCcccc
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RK----------GGPGITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~----------~~~~~~~adiivlNK~Dl~~~~~~ 137 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|+++..... .. .......+.++|+||+|+.+.. .
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~ 133 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-V 133 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-S
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-c
Confidence 467899999993110 011234579999999998753211 00 0111345789999999997431 2
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..+...+..+. ....+++++||++|.|++++++++.+.+.
T Consensus 134 ~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 134 STEEAQAWCRD-NGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CHHHHHHHHHH-TTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34444444442 34579999999999999999999988764
No 61
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.73 E-value=1.5e-08 Score=75.44 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.|++|+|..--.. ..+..+|.+++|+|+++..... ..+...-..+.++|+||+|+.+.. ...+
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~ 129 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTK 129 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHH
Confidence 45577899999311111 1123479999999998743211 011122345789999999998642 2333
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
......+..+ .+++++||++|.|++++++++.+.+...
T Consensus 130 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 130 QAQDLARSYG--IPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4444444443 5899999999999999999998776544
No 62
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.72 E-value=6.1e-09 Score=90.40 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred cCCcEEEEecCCCe-eEE----e-------eeeecCceEEEEEeCCCCCCCcc-CCCCC-CCceeEEEEecCCCCCcccc
Q 029893 72 FKADLLLCESGGDN-LAA----N-------FSRELADYIIYIIDVSGGDKIPR-KGGPG-ITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~----~-------~~~~~ad~~v~VvDa~~~~~~~~-~~~~~-~~~adiivlNK~Dl~~~~~~ 137 (186)
.+..+.|++|+|.. ... . ..+..+|++++|+|++++..... ..... -..+.++|+||+|+.++ .
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~--~ 366 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--I 366 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--C
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc--c
Confidence 46679999999943 110 0 11235799999999987643211 00000 14578999999999765 3
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..+++.+.. ....+++++||++|+|++++++++.+.+.
T Consensus 367 ~~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 367 NEEEIKNKL---GTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp CHHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CHHHHHHHh---cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444443322 22368999999999999999999988644
No 63
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.72 E-value=1.7e-08 Score=75.95 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+......+.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 148 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREE 148 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHH
Confidence 46789999999310 0 1112345799999999987532110 010 01245789999999997642223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..+..+.. ..+++++||++|.|++++++++.+.+...
T Consensus 149 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 149 GEAFAREH--GLIFMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 44444444 35899999999999999999998776544
No 64
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.72 E-value=1.3e-08 Score=76.55 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=69.2
Q ss_pred CcEEEEecCCCeeE-------Eee------eeecC---ceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCC
Q 029893 74 ADLLLCESGGDNLA-------ANF------SRELA---DYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 74 ~D~iiIEtsG~~l~-------~~~------~~~~a---d~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
..+.|++|+|..-. ..+ .+..+ |.+++|+|++++..... .+......+.++|+||+|+.+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 37999999993210 000 11123 88999999987643221 111123468999999999987
Q ss_pred cccccHHHHHHHHHh-h--CCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 134 AIGADLAVMERDALR-M--RDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~-~--~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+ .+.....+.+++ + .+..+++++||++|.|++++++++.+.++
T Consensus 149 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 149 K--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp G--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred h--HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 6 445444444433 2 34579999999999999999999987654
No 65
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.72 E-value=5.1e-09 Score=90.86 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=71.0
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
.+..+.|++|+|.. .... .....+|.+++|+|+.++...+. ........+.++++||+|+.++ ...+...+
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~--~~~~~~~~ 148 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEM 148 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc--hhHHHHHH
Confidence 35679999999921 0000 11235799999999988643211 0112244567999999999875 34443333
Q ss_pred H----HHhh--CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 D----ALRM--RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~----l~~~--~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
. ++.. .+..+++++||++|.|+++|+++|.+..+.
T Consensus 149 ~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 149 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 3 3332 235799999999999999999999998763
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.71 E-value=7.2e-09 Score=75.38 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
...+.|++|+|..--. ...+..+|.+++|+|+++..... ......-..+.++|+||+|+.++.....+
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 129 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS 129 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHH
Confidence 4568899999931100 11123579999999998743210 01111234678999999999764222233
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...+..+.. ..+++++||++|.|++++++++.+.+..
T Consensus 130 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 130 EGRALAEEW--GCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHH--TSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 344444443 3589999999999999999999887754
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.71 E-value=2.8e-09 Score=81.94 Aligned_cols=107 Identities=10% Similarity=0.043 Sum_probs=68.3
Q ss_pred CcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCCC------CCCceeEEEEecCCCCCcccccHHHH
Q 029893 74 ADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~------~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
..+.|++|+|..-- ....+..+|.+++|+|+++...... .+.. .-..+.++|+||+|+.+......+..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 140 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLV 140 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHH
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHH
Confidence 67899999993110 1112335799999999987532111 1100 11357899999999986521222333
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
....+. ...+++++||++|.|++++++++.+.+...+.
T Consensus 141 ~~~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 141 MEVLKG--KNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp HHHTTT--CCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred HHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 222222 35689999999999999999999998876543
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.71 E-value=1.3e-08 Score=76.46 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=68.8
Q ss_pred CcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCCC----CCCCceeEEEEecCCCCCcccccHHHHHH
Q 029893 74 ADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKGG----PGITQADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 74 ~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~~----~~~~~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
..+.|++|+|..-- ....+..+|.+++|+|++++.... ..+. .....+.++|+||+| ........+++.+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~~~~~~~~~~~ 171 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNKFQVDILEVQK 171 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-CCSCHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cccccCCHHHHHH
Confidence 78999999993110 011224579999999998763211 1110 111268899999999 4322234556666
Q ss_pred HHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.++.. ..+++++||++|.|++++++++.+.+..
T Consensus 172 ~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 172 YAQDN--NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHT--TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 66654 3599999999999999999999876653
No 69
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.71 E-value=2e-08 Score=75.51 Aligned_cols=107 Identities=17% Similarity=0.057 Sum_probs=70.0
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--cCC------CCCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--RKG------GPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~~~------~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|++|+|..--. ...+..+|.+++|+|++...... ..+ ...-..+.++|+||+|+.+......+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 151 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE 151 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHH
Confidence 35678899999931100 11224579999999998753211 000 11124578999999999864222334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
......+.. ..+++++||++|.|++++++++.+.+...
T Consensus 152 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 152 EARMFAENN--GLLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 444444433 46999999999999999999998876543
No 70
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.70 E-value=7.4e-09 Score=87.71 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=68.9
Q ss_pred CcEEEEecCCCee-EEe--eeeecCceEEEEEeCCCCCCCcc--CC---CCCCC-ceeEEEEecCCCCCcccccHHHHHH
Q 029893 74 ADLLLCESGGDNL-AAN--FSRELADYIIYIIDVSGGDKIPR--KG---GPGIT-QADLLVINKTDLASAIGADLAVMER 144 (186)
Q Consensus 74 ~D~iiIEtsG~~l-~~~--~~~~~ad~~v~VvDa~~~~~~~~--~~---~~~~~-~adiivlNK~Dl~~~~~~~~~~~~~ 144 (186)
..+.|++|+|-.- ... .....+|.+++|+|+.++..... .+ ...+. .+.++|+||+|+.++ .+.....+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~--~~~~~~~~ 152 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK--EEALSQYR 152 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--HHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch--HHHHHHHH
Confidence 6789999999210 000 11235799999999998752211 11 11112 267899999999976 44433333
Q ss_pred HHHhh----C-CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 DALRM----R-DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~l~~~----~-p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+++. . ...+++++||++|.|+++|++++.+.++.
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 33332 2 35799999999999999999999987654
No 71
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=2.2e-09 Score=81.10 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=69.9
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|++|+|..- . ....+..+|.+++|+|+++..... ..+. ..-..+.++|+||+|+.++.....+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~ 149 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 149 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 356789999999311 0 011234579999999998754211 0010 0124578999999999764223344
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+..+..+.. ..+++++||++|.|++++++++.+.++
T Consensus 150 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 150 DAKEYAESI--GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHTT--TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 555555544 368999999999999999999987654
No 72
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.69 E-value=4.4e-09 Score=76.87 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=68.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCCC-----CCceeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGPG-----ITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~~-----~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++..... ..+... -..+.++|+||+|+.++.....+..
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 132 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEA 132 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHH
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHH
Confidence 56899999999310 0 111224579999999998753211 011111 2457899999999986421233444
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+..+..+ .+++++||++|.|++++++++.+.+.
T Consensus 133 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 133 EGLAKRLK--LRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHT--CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 44444443 58999999999999999999987653
No 73
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.69 E-value=1.6e-08 Score=86.47 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCcEEEEecCCCee-------EEee-------eeecCceEEEEEeCCCCCCCccC-C---CCCCCceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDNL-------AANF-------SRELADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-------~~~~-------~~~~ad~~v~VvDa~~~~~~~~~-~---~~~~~~adiivlNK~Dl~~~ 134 (186)
+..+.|++|+|..- ...+ .++.+|++++|+|++++...+.. + ......+.++|+||+|+.+.
T Consensus 222 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 222 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 44577888888310 0111 22347999999999987543211 1 11235689999999999875
Q ss_pred ccccHHHHHHHHHhhC---CCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 135 IGADLAVMERDALRMR---DGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~---p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.....+++.+.+++.. .++|++++||++|.|++++++.+.+.+..+.
T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 302 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 2222344555554432 4689999999999999999999998887654
No 74
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.69 E-value=3.1e-08 Score=73.38 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=69.8
Q ss_pred CCcEEEEecCCCeeEEeeeeecCceEEEEEeCCCCCCCc--cC-------CCC--CCCceeEEEEecCCCCC--cccccH
Q 029893 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIP--RK-------GGP--GITQADLLVINKTDLAS--AIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~~~~~ad~~v~VvDa~~~~~~~--~~-------~~~--~~~~adiivlNK~Dl~~--~~~~~~ 139 (186)
.+.+.|.+|+|. ..+..+..+|.+++|+|+++..... .. ... .-..+.++|+||+|+.+ ......
T Consensus 53 ~~~l~i~Dt~G~--~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~ 130 (178)
T 2iwr_A 53 THLVLIREEAGA--PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD 130 (178)
T ss_dssp EEEEEEEECSSS--CCHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH
T ss_pred EEEEEEEECCCC--chhHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH
Confidence 466788999993 2222234589999999998753211 00 000 12458899999999942 211233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
++..+..+.. ...+++++||++|.|++++++++.+.+...+.
T Consensus 131 ~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 131 ARARALXADM-KRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHH-SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 4444444443 24689999999999999999999887665443
No 75
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.68 E-value=5.8e-09 Score=77.12 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++..... . .....-..+.++|+||+|+.+......+
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 135 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 46788999999310 0 011123479999999998753211 0 0011224578999999999865212223
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
......+.. ..+++++||++|.|++++++++.+.+.....
T Consensus 136 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 136 EASAFGASH--HVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 333333332 4699999999999999999999988776544
No 76
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.68 E-value=1.1e-08 Score=75.86 Aligned_cols=106 Identities=20% Similarity=0.130 Sum_probs=69.0
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.|++|+|..- . ....+..+|.+++|+|+++..... ..+. ..-..+.++|+||+|+.++.....++
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 139 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAED 139 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHH
Confidence 56789999999311 0 011234579999999998753211 0010 01245789999999997653223444
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..+..+.. ..+++++||++|.|++++++++.+.++..
T Consensus 140 ~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 140 AQTYAQEN--GLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHT--TCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44444443 36899999999999999999998866544
No 77
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.68 E-value=2.3e-08 Score=74.47 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|+++...... .+ ...-..+.++|+||+|+.++......+
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE 137 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 467899999993110 0112345799999999987532110 00 011245789999999997542223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
..+..+.. ..+++++||++|.|++++++++.+.+...
T Consensus 138 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 138 ASRFAQEN--ELMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp HHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 44444433 46899999999999999999998766543
No 78
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.68 E-value=4.5e-09 Score=80.42 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=69.4
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCcccc----
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA---- 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~~~---- 137 (186)
.+.+.|++|+|..- ..+..+..+|.+++|+|+++...... .+... -..+.++|+||+|+.++...
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 135 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADH 135 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTC
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccc
Confidence 46788999999311 01122345799999999987532110 11110 14578999999999765210
Q ss_pred ----cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 138 ----DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 138 ----~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
..++..+..+..+ ..+++++||++|.|++++++++.+.+...+.
T Consensus 136 ~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 136 TNVITSTQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp SSCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred cCCCCHHHHHHHHHHcC-CceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 2333333334432 3489999999999999999999887765443
No 79
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.68 E-value=2.4e-08 Score=72.97 Aligned_cols=104 Identities=21% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+.. ...+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~ 129 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQ 129 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHH
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCHHH
Confidence 46788999999310 0 0111235789999999987532110 110 01245789999999995431 23334
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+..++.+ .+++++||++|.|++++++++.+.+.+
T Consensus 130 ~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 130 GEALAKELG--IPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHT--CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444443 589999999999999999999988765
No 80
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.67 E-value=1.3e-08 Score=76.89 Aligned_cols=105 Identities=22% Similarity=0.159 Sum_probs=68.7
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|+++...... .+ ...-..+.++|+||+|+.+......+.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 153 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQ 153 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 467899999993110 0112245799999999987542211 01 011245789999999997652222333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
..+..+. ....+++++||++|.|++++++++.+.+.
T Consensus 154 ~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 154 GEKFAQQ-ITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHT-STTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4433333 34579999999999999999999987664
No 81
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.67 E-value=9.7e-09 Score=75.90 Aligned_cols=106 Identities=17% Similarity=0.037 Sum_probs=68.5
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCCCC--------CCce-eEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGGPG--------ITQA-DLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~~--------~~~a-diivlNK~Dl~~~~~~~ 138 (186)
...+.|++|+|...- ....+..+|.+++|+|+++...... .+... -..+ .++|+||+|+.+.....
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~ 134 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK 134 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC
Confidence 367899999993110 0112345799999999987543110 11000 1234 58899999997642122
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.+...+..+..+ .+++++||++|.|++++++++.+.+...
T Consensus 135 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 135 PEKHLRFCQENG--FSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 334444444443 5899999999999999999999877544
No 82
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.67 E-value=2.7e-08 Score=75.79 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
...+.|++|+|..- . ....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+......++
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 156 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAE 156 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHH
Confidence 46889999999310 0 0112345799999999987432110 110 01235789999999998642223444
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
..+..+.. ...+++++||++|.|++++++++.+.+....
T Consensus 157 ~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 157 AQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHT-TCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 54444443 2338999999999999999999998876543
No 83
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.66 E-value=3.4e-09 Score=78.82 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=69.8
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+.|++|+|..-- ....+..+|.+++|+|+++...... .+... -..+.++|+||+|+.+...
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 130 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 130 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhh
Confidence 3567779999993110 1112345799999999987532110 11100 1457899999999976410
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhccc
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKK 184 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~~~ 184 (186)
...+......+.. ...+++++||++|.|++++++++.+.+...+.+|
T Consensus 131 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 131 LKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp HHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC--
T ss_pred hcccccccCCHHHHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHHHHhcccccC
Confidence 1112222222332 3348999999999999999999998887655533
No 84
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.66 E-value=9.1e-09 Score=77.95 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=70.2
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCcc------
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------ 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~------ 135 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+... -..+.++|+||+|+.+..
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 146 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIEL 146 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHH
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhh
Confidence 45677999999311 0 1112345799999999987532111 11100 145789999999997531
Q ss_pred ------cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 136 ------GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 136 ------~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
....+......+.. ...+++++||++|.|++++++++.+.+...+.
T Consensus 147 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 147 DKCKEKPVPEEAAKLLAEEI-KAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccccccCCHHHHHHHHHhc-CCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 01223333333333 33489999999999999999999988877665
No 85
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=77.99 Aligned_cols=105 Identities=15% Similarity=0.063 Sum_probs=69.0
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.++......+
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 152 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE 152 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHH
Confidence 46889999999310 0 1112345799999999987532110 110 11245789999999997642223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+..+.. ..+++++||++|.|++++++++.+.+..
T Consensus 153 ~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 153 ASRFAQEN--ELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44444443 3689999999999999999999876654
No 86
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=3.2e-08 Score=75.78 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|++...... ..+. ..-..+.++|+||+|+.+......+.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 153 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQR 153 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH
Confidence 46788999999311 0 111234579999999998753211 0010 01235789999999997542122333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.....+.. ..+++++||++|.|++++++++.+.+...
T Consensus 154 ~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 154 AEEFSEAQ--DMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 44333333 36899999999999999999998776543
No 87
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.65 E-value=1.2e-08 Score=79.52 Aligned_cols=105 Identities=22% Similarity=0.185 Sum_probs=70.3
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
..+.+-|.+|+|-.. ..+..++.++.+++|+|.+....... .+. ..-..+.+||.||+|+.+...-..+
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~ 139 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 139 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHH
Confidence 356777899999310 01223456899999999987532110 010 0113478999999999875333445
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+..+..++.+ ++++++||++|.|++++|+.|.+.++
T Consensus 140 e~~~~a~~~~--~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 140 EGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHT--CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHhhHHHHhC--CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 5555556654 68999999999999999999987654
No 88
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.65 E-value=2.6e-08 Score=72.17 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=68.1
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+++.+++|+|..--.. ..+..+|.+++|+|+++..... . .+...-..+.++|+||+|+.+.. ...
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~ 127 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VES 127 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCH
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCH
Confidence 356789999999311010 1123479999999987643211 0 01111245789999999998641 233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+...+..++.+ .+++++||++|.|++++++++.+.+.
T Consensus 128 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 128 RQAQDLARSYG--IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHT--CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 34444444443 58999999999999999999988764
No 89
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.64 E-value=2.3e-08 Score=75.10 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCee-E---EeeeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNL-A---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~---~~~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
...+.|++|+|..- . ....+..+|.+++|+|+++...... .+......+.++|+||+|+.+......
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 147 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT 147 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH
Confidence 46789999999310 0 0111345799999999987432110 111123457899999999976521223
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCC---CCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHG---LGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g---~gi~~l~~~i~~~~~~ 179 (186)
+......+.. ..+++++||++| .|++++++++.+.++.
T Consensus 148 ~~~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 148 DLAQKFADTH--SMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHHT--TCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred HHHHHHHHHc--CCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 3333333333 358999999999 9999999999876643
No 90
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.64 E-value=6.9e-09 Score=84.71 Aligned_cols=107 Identities=13% Similarity=0.039 Sum_probs=71.1
Q ss_pred hcCCcEEEEecCCCe-eE---------E--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDN-LA---------A--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~-l~---------~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
..+..+.|++|+|.. -. . ......+|++++|+|+++ ...... .......|.++++||+|+.+.
T Consensus 53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~ 131 (301)
T 1ega_A 53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE 131 (301)
T ss_dssp ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC
T ss_pred ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc
Confidence 346689999999943 00 0 012234689999999976 321111 111235689999999999872
Q ss_pred ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 135 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
. ..+....+.+.+..+..+++++||++|.|++++++.+.+.+++
T Consensus 132 ~-~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 132 K-ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp H-HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred H-HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 1 3344444445554455689999999999999999999876553
No 91
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.63 E-value=6e-09 Score=79.81 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCe-eEE---eeeeecCceEEEEEeCCCCCCCc---cC-C--------CCCCCceeEEEEecCCCCCccc
Q 029893 73 KADLLLCESGGDN-LAA---NFSRELADYIIYIIDVSGGDKIP---RK-G--------GPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~---~~~~~~ad~~v~VvDa~~~~~~~---~~-~--------~~~~~~adiivlNK~Dl~~~~~ 136 (186)
+..+.|++|+|.. ... ...+..+|.+++|+|+++..... .. + ......+.++|+||+|+.+.
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 130 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA-- 130 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC--
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc--
Confidence 5789999999931 000 11134579999999998732100 00 0 11224588999999999876
Q ss_pred ccHHHHHHHHHh------------------------hCC-------------CCCEEEEeccCC------CCHHHHHHHH
Q 029893 137 ADLAVMERDALR------------------------MRD-------------GGPFIFAQVKHG------LGVEEIVNHI 173 (186)
Q Consensus 137 ~~~~~~~~~l~~------------------------~~p-------------~a~i~~~Sa~~g------~gi~~l~~~i 173 (186)
...+...+.+++ ... ..+++++||++| .|++++++++
T Consensus 131 ~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l 210 (214)
T 2fh5_B 131 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWL 210 (214)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHH
Confidence 334333333321 111 457999999999 9999999999
Q ss_pred HHH
Q 029893 174 LQA 176 (186)
Q Consensus 174 ~~~ 176 (186)
.+.
T Consensus 211 ~~~ 213 (214)
T 2fh5_B 211 AKI 213 (214)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 92
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=1.5e-08 Score=74.16 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc--CC--------CCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR--KG--------GPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~--~~--------~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.+.|++|+|..--. ...+..+|.+++|+|+++...... .+ ...-..+.++|+||+|+.+......
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~ 129 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS 129 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH
Confidence 4678999999931100 111235799999999986432110 00 0112357899999999976522222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.......+.. ..+++++||++|.|++++++++.+..+
T Consensus 130 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 130 SEAEALARTW--KCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHh--CCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 3333333333 358999999999999999999987654
No 93
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.63 E-value=1.1e-08 Score=74.74 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=66.9
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|++|+|..--. ...+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.++.....+
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~ 132 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 132 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHH
Confidence 35678999999941100 111245799999999987532110 010 0123467889999999865212233
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
......+.. ..+++++||++|.|++++++++.+.+
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 133 DAKDYADSI--HAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 333333433 36899999999999999999998764
No 94
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.62 E-value=9e-09 Score=75.92 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCCC------CCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGGP------GITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~~------~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++..... ..+.. .-..+.++|+||+|+.++.....+.
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 141 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 141 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHH
Confidence 46789999999311 0 011234579999999998743211 01100 1235789999999998652223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.....+..+ .+++++||++|.|++++++++.+.++
T Consensus 142 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 142 GERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHT--CEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 444444443 58999999999999999999987653
No 95
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.62 E-value=1.9e-08 Score=76.15 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCC-------CC--CCCceeEEEEecCCCCC-cccc
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKG-------GP--GITQADLLVINKTDLAS-AIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~-------~~--~~~~adiivlNK~Dl~~-~~~~ 137 (186)
...+.|++|+|..-- ....+..+|.+++|+|+++..... ..+ .. ....+.++|+||+|+.+ ....
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v 151 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV 151 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC
Confidence 467899999994210 111234579999999998753211 011 11 13458899999999987 3222
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccC-CCCHHHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKH-GLGVEEIVNHILQAWEA 179 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~-g~gi~~l~~~i~~~~~~ 179 (186)
..++..+..+..+ .+++++||++ |.|++++++++.+.+..
T Consensus 152 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 152 RLDMAQDWATTNT--LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CHHHHHHHHHHTT--CEEEECCC-------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 3445555555543 6999999999 99999999999876654
No 96
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.62 E-value=1e-08 Score=74.92 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
.++.+.|++|+|..--. ...+..+|.+++|+|+++..... ..+. ..-..+.++|+||+|+.++.....+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHH
Confidence 35678999999931000 11224579999999998753211 0000 0123477888999999764222334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+..+..+.. ..+++++||++|.|++++++++.+.+
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 133 EAQSYADDN--SLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 444444433 36899999999999999999998754
No 97
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.61 E-value=1.5e-08 Score=87.45 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=66.4
Q ss_pred hcCCcEEEEecCCCee----EEe-------eeeecCceEEEEEeCCCCCCCcc-CCCCC-CCceeEEEEecCCCCCcccc
Q 029893 71 LFKADLLLCESGGDNL----AAN-------FSRELADYIIYIIDVSGGDKIPR-KGGPG-ITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l----~~~-------~~~~~ad~~v~VvDa~~~~~~~~-~~~~~-~~~adiivlNK~Dl~~~~~~ 137 (186)
..+..+.|++|+|..- ... ..+..+|++++|+|++++..... .+... -..+.++|+||+|+.+. .
T Consensus 269 ~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~--~ 346 (462)
T 3geh_A 269 VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEK--Q 346 (462)
T ss_dssp ETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCG--G
T ss_pred ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcc--h
Confidence 3577899999999421 011 12345799999999988643211 00000 12488999999999876 2
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
... .++.+....+++++||++|.|++++++++.+.+....
T Consensus 347 ~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 347 LIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp GST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred hhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 222 2222334568999999999999999999998876543
No 98
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.60 E-value=9.8e-09 Score=79.47 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- .....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+......+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 140 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEE 140 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHH
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence 46789999999310 01112345799999999987532110 010 01245789999999997642223344
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.....+.. ..+++++||++|.|++++++++.+.+..
T Consensus 141 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 141 SKTFAQEN--QLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHT--TCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44444443 3689999999999999999999877654
No 99
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.60 E-value=5.2e-08 Score=73.81 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=69.0
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.|++|+|..-- ....+..+|.+++|+|+++..... ..+. ..-..+.++|+||+|+.+......+
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 134 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 134 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHH
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHH
Confidence 3568899999993100 011234579999999998753211 0010 0124578999999999875222334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
...+..+..+ .+++++||++|.|++++++++.+.+.
T Consensus 135 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 135 RGRQLADHLG--FEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444444443 58999999999999999999887654
No 100
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.60 E-value=5.2e-08 Score=74.18 Aligned_cols=105 Identities=23% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++..... ..+. ..-..+.++|+||+|+.+.. ...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~ 146 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQ 146 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHH
Confidence 46799999999310 0 111234579999999998753211 0110 01245789999999995431 22333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.....+..+ .+++++||++|.|++++++++.+.+...
T Consensus 147 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 147 GEALAKELG--IPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHT--CCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 443344432 5899999999999999999998877653
No 101
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.58 E-value=2.5e-09 Score=85.42 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=66.1
Q ss_pred cCCcEEEEecCCCe-eEE-----e----e---ee--ecCceEEEEEeCCCCCCCc--cCCCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA-----N----F---SR--ELADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~-----~----~---~~--~~ad~~v~VvDa~~~~~~~--~~~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. ... . . .+ ..+|++++|+|+++..... ......+..+.++|+||+|+.+.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 35689999999942 111 0 0 11 3579999999998743211 11122346789999999998754
Q ss_pred cc--ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 135 IG--ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 135 ~~--~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.. ...+.+.+. + ..|++++||++|.|++++++++.+.
T Consensus 126 ~~~~~~~~~l~~~---l--g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 126 RGISIDTEKLESL---L--GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TTCEECHHHHHHH---H--CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHH---c--CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 21 222333222 2 3699999999999999999999765
No 102
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.58 E-value=8.6e-08 Score=82.01 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=72.9
Q ss_pred CCcEEEEecCCCe----eE----Eee-------eeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCC
Q 029893 73 KADLLLCESGGDN----LA----ANF-------SRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (186)
Q Consensus 73 ~~D~iiIEtsG~~----l~----~~~-------~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~ 133 (186)
+.++.+++|.|.. .. ..+ .+..+|.+++|+|++.+..... .+......+.++|+||||+.+
T Consensus 227 g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 227 GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 4467788999952 10 001 1124689999999987643221 111124568999999999987
Q ss_pred cccccHHHHHHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 134 AIGADLAVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 134 ~~~~~~~~~~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
......+++.+.+++. .++++++++||++|.|++++++.+.+.++.+..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 307 HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 5212244454444332 246899999999999999999999988877643
No 103
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.57 E-value=2.5e-08 Score=75.15 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=70.4
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCc--cccc
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA--IGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~--~~~~ 138 (186)
..+.+.|++|+|..-- .+..+..+|.+++|+|+++...... .+... -..+.++|+||+|+.++ ....
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 148 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT 148 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCC
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCccc
Confidence 3566789999993100 1112345799999999987532111 11110 13578999999999753 1123
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.+...+..+..+ ..+++++||++|.|++++++++.+.+...+
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 149 KQEGDDLCQKLG-CVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHT-CSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhcC-CCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 344444444443 234999999999999999999998776544
No 104
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=1.2e-07 Score=73.48 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCee----EEeeeeecCceEEEEEeCCCCCCCc---------cCCCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIP---------RKGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l----~~~~~~~~ad~~v~VvDa~~~~~~~---------~~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.+++++|.|..- ..+..+..++..++|+|.+...... ......-..+.++|.||+||.+......
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~ 165 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV 165 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH
Confidence 45678889999311 0112334679999999987642210 0010112457899999999975421222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
++.....+.. ..+++++||++|.|++++++++.+.+...+
T Consensus 166 ~e~~~~a~~~--~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 166 SEGRACAVVF--DCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3322222333 358999999999999999999988775443
No 105
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.56 E-value=1.7e-07 Score=71.07 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCeeEE----eeeeecCceEEEEEeCCCCCCCc--cC-------CCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLAA----NFSRELADYIIYIIDVSGGDKIP--RK-------GGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~~~~~~ad~~v~VvDa~~~~~~~--~~-------~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.+.+.+|.|..-.. +..+..+|.+++|+|+++..... .. .......+.++|+||+|+.+......
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 150 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL 150 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH
Confidence 5677888999931100 11133579999999998643211 00 11112457899999999986532234
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhhc
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 182 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~~ 182 (186)
++..+..+.. ..+++++||++|.|++++++++.+.+...++
T Consensus 151 ~~~~~~a~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 151 EEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHh--CCEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4444444443 3589999999999999999999988876554
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.53 E-value=9e-09 Score=78.70 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=65.5
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+.|++|+|..-- ....+..+|.+++|+|+++...... .+... -..+.++|+||+|+.+...
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 155 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 155 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhh
Confidence 3556779999993100 1112345799999999987532211 11110 2457899999999986521
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
...++.....+. ....+++++||++|.|++++++++.+.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 156 LKEKKLTPITYPQGLAMAKE-IGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHTTCCCCCHHHHHHHHHH-TTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred hhccccccccHHHHHHHHHh-cCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 011222222233 334579999999999999999998763
No 107
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.51 E-value=5e-08 Score=73.93 Aligned_cols=104 Identities=22% Similarity=0.188 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCc------c
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASA------I 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~------~ 135 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.+. .
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 155 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQK 155 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCC
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccccc
Confidence 46788999999310 0 0111235799999999987532111 110 1124578999999999631 1
Q ss_pred cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 136 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 136 ~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
....+......+.. ..+++++||++|.|++++++++.+.+.
T Consensus 156 ~v~~~~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 156 CVPGHFGEKLAMTY--GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11223333333443 358999999999999999999987664
No 108
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=9.1e-08 Score=78.03 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=54.4
Q ss_pred eecCceEEEEEeCCCCCCCc---cCCC---CCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCC
Q 029893 92 RELADYIIYIIDVSGGDKIP---RKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 165 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~~~~---~~~~---~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g 165 (186)
+..+|.+++|+|+++..... ..+. .....+.++|+||+||.++ .+.++..+..+......+++++||++|.|
T Consensus 82 ~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~--~~v~~~~~~~~~~~~~~~~~~~SAktg~g 159 (301)
T 1u0l_A 82 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMG 159 (301)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc--hhHHHHHHHHHHHhhhCcEEEEECCCCcC
Confidence 45689999999998754211 1111 1124578999999999875 33333333333332116899999999999
Q ss_pred HHHHHHHHH
Q 029893 166 VEEIVNHIL 174 (186)
Q Consensus 166 i~~l~~~i~ 174 (186)
++++++.+.
T Consensus 160 v~~lf~~l~ 168 (301)
T 1u0l_A 160 IEELKEYLK 168 (301)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998764
No 109
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.50 E-value=9.6e-08 Score=84.90 Aligned_cols=102 Identities=18% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCccC--C--CCCCCceeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~~--~--~~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
.+.+-|++|+|- ..| .+..+|.+++|+|++++...+.. + ......+.++++||+|+.+. ..++.
T Consensus 70 ~~~l~liDTPGh---~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a---~~~~v 143 (599)
T 3cb4_D 70 TYQLNFIDTPGH---VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA---DPERV 143 (599)
T ss_dssp EEEEEEEECCCC---GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC---CHHHH
T ss_pred eEEEEEEECCCc---hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc---cHHHH
Confidence 366779999992 111 12347999999999987653211 0 11234588999999999875 23344
Q ss_pred HHHHHhhC--CCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 143 ERDALRMR--DGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 143 ~~~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
.+.+++.. +..+++++||++|.|++++++++.+.+|.-
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 44454433 224699999999999999999999887653
No 110
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.50 E-value=8.4e-09 Score=79.57 Aligned_cols=106 Identities=11% Similarity=-0.040 Sum_probs=68.8
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCCCC-----CCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGGPG-----ITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~~~-----~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+..+.|++|+|..-- ....+..+|.+++|+|+++...... .+... -..+.++|+||+|+.+.. ....
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~ 139 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAK 139 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCS--SCGG
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccc--ccHH
Confidence 4577899999993110 1112345799999999987532110 11000 145789999999998652 2222
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.....+.. ..+++++||++|.|++++++++.+.+....
T Consensus 140 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 140 SIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GCCHHHHH--TCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 22223333 358999999999999999999998876543
No 111
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.50 E-value=2.7e-08 Score=84.37 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=66.7
Q ss_pred CcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCCC-CCcc-CC---CCCCC-ceeEEEEecCCCCCcccccH----H
Q 029893 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGD-KIPR-KG---GPGIT-QADLLVINKTDLASAIGADL----A 140 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~~-~~~~-~~---~~~~~-~adiivlNK~Dl~~~~~~~~----~ 140 (186)
..+.|++|+|-. ....+ ....+|.+++|+|+.++. ..+. .+ ...+. .+.++++||+|+.+. .+. +
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~--~~~~~~~~ 160 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK--EKALENYR 160 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--HHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH--HHHHHHHH
Confidence 568999999921 00011 122469999999999864 2111 00 11122 246788999999876 332 2
Q ss_pred HHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 141 VMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 141 ~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
++.+.++.. ....+++++||++|.|+++|+++|.+.++.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 333333321 235799999999999999999999987653
No 112
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.50 E-value=5.1e-08 Score=82.65 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=62.4
Q ss_pred CcEEEEecCCCe-eEEee--eeecCceEEEEEeCCCCC-CCcc-C---CCCCCCc-eeEEEEecCCCCCccc--ccHHHH
Q 029893 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGD-KIPR-K---GGPGITQ-ADLLVINKTDLASAIG--ADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~~~~--~~~~ad~~v~VvDa~~~~-~~~~-~---~~~~~~~-adiivlNK~Dl~~~~~--~~~~~~ 142 (186)
..+.|++|+|-. ....+ ....+|.+++|+|+.++. ..+. . ....+.. +.++++||+|+.+... ...+++
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 578999999921 00001 112469999999999864 2110 0 0111222 5789999999987521 123444
Q ss_pred HHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 143 ERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 143 ~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+.+++. ....+++++||++|.|+++|++++.+.++.
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 4444432 235799999999999999999999986653
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.50 E-value=1.6e-08 Score=80.86 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=67.5
Q ss_pred cCCcEEEEecCCCe-eEE---------eee-eecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCccc--
Q 029893 72 FKADLLLCESGGDN-LAA---------NFS-RELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG-- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~---------~~~-~~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~~~-- 136 (186)
.+..+.|++|+|.. ... .+. ...+|++++|+|+++...... ........+.++|+||+|+.+...
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~ 129 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMK 129 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchH
Confidence 36789999999942 110 111 125799999999988543211 001123568999999999865421
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.+.+. +.. ..|++++||++|.|++++++++.+..+
T Consensus 130 ~~~~~l~---~~l--g~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 130 IDRYELQ---KHL--GIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp BCHHHHH---HHH--CSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHc--CCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 1223332 222 269999999999999999999988765
No 114
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.49 E-value=6.1e-08 Score=74.00 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~~~----- 136 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|++...... ..+... -..+.++|+||+|+.+...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 151 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTEL 151 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhh
Confidence 567899999993100 112234579999999998743211 111110 1457899999999976510
Q ss_pred -------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 137 -------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 137 -------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
...+......+.. ...+++++||++|.|++++++++.+....
T Consensus 152 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 152 ARMKQEPVRTDDGRAMAVRI-QAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred hhcccCCCCHHHHHHHHHhc-CCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 0111122222222 22389999999999999999999887653
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.48 E-value=1e-08 Score=74.45 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCee----EE------eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCccccc
Q 029893 73 KADLLLCESGGDNL----AA------NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 73 ~~D~iiIEtsG~~l----~~------~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~ 138 (186)
+..+.|++|+|..- .. ...+..+|.+++|+|+++....... +......+.++|+||+|+.+.. .+
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~ 126 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-LY 126 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-GG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-Hh
Confidence 45788999999321 00 0012357999999999875332111 1111345789999999998651 11
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..+ +.+. ...+++++||++|.|++++++++.+.+
T Consensus 127 ~~~----~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 127 LGP----LYGL-GFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CGG----GGGG-SSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHH----HHhC-CCCCeEEEecccCCChHHHHHHHHHhC
Confidence 111 1222 233899999999999999999998764
No 116
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.48 E-value=1.3e-07 Score=78.80 Aligned_cols=105 Identities=21% Similarity=0.163 Sum_probs=70.3
Q ss_pred cCCcEEEEecCCCeeEEe------------eeeecCceEEEEEeCCCCC--CCc--cCC----CCCC-CceeEEEEecCC
Q 029893 72 FKADLLLCESGGDNLAAN------------FSRELADYIIYIIDVSGGD--KIP--RKG----GPGI-TQADLLVINKTD 130 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~------------~~~~~ad~~v~VvDa~~~~--~~~--~~~----~~~~-~~adiivlNK~D 130 (186)
.+.++.+++|+|..-..+ .....+|.+++|+|++... ... ..+ .... ..+.++|+||+|
T Consensus 212 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 212 GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 356799999999411000 0112478999999987754 111 000 0111 568899999999
Q ss_pred CCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 131 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+.+. ...+...+.++.. ..+++++||++|+|++++++++.+.+...
T Consensus 292 l~~~--~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 292 VADE--ENIKRLEKFVKEK--GLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TCCH--HHHHHHHHHHHHT--TCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCh--HHHHHHHHHHHhc--CCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9876 4444454444433 46899999999999999999998877654
No 117
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=1.1e-07 Score=71.56 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--c-CCCCC-----CCceeEEEEecCCCCCcc------
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--R-KGGPG-----ITQADLLVINKTDLASAI------ 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~-~~~~~-----~~~adiivlNK~Dl~~~~------ 135 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|+++..... . .+... -..+.++|+||+|+.+..
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 144 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARL 144 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHH
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhc
Confidence 467889999993110 111234579999999998753211 0 11110 145789999999998641
Q ss_pred ------cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 136 ------GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 136 ------~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
....++..+..+.. ...+++++||++|.|++++++++.+..
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 145 NDMKEKPICVEQGQKLAKEI-GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TTTTCCCCCHHHHHHHHHHH-TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccCcccCHHHHHHHHHHc-CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 01223333333433 234899999999999999999998764
No 118
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=1.3e-07 Score=71.12 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=67.9
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCc--cCC-------CC-CCCceeEEEEecCCCCCccccc
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIP--RKG-------GP-GITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~--~~~-------~~-~~~~adiivlNK~Dl~~~~~~~ 138 (186)
....+.|++|+|..--. ...+..+|.+++|+|+++..... ..+ .. .-..+.++|+||+|+.+.. ..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~ 132 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD 132 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC
Confidence 35678899999931100 11224579999999998643211 000 00 1234789999999998641 23
Q ss_pred HHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+......+... .+++++||++|.|++++++++.+.+..
T Consensus 133 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 133 TREAQAVAQEWK--CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 333444444443 589999999999999999999876543
No 119
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.48 E-value=1.6e-07 Score=83.49 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=67.7
Q ss_pred CcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccc---------
Q 029893 74 ADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA--------- 137 (186)
Q Consensus 74 ~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~--------- 137 (186)
+.+.|++|+|-. .. .......+|.+++|+|++++...+. .+......|.++++||+|+.+....
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHH
Confidence 468999999931 00 0112235799999999998754221 1111234588999999999753100
Q ss_pred ------c----H----HHHHHHHHhh-------------CCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 138 ------D----L----AVMERDALRM-------------RDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 138 ------~----~----~~~~~~l~~~-------------~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
. + .++...+.+. ....|++++||++|.|+++|++++..+.+..
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0 0 1122222221 1234899999999999999999999887743
No 120
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.48 E-value=2.7e-08 Score=73.75 Aligned_cols=105 Identities=17% Similarity=0.084 Sum_probs=63.8
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCcccc---
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA--- 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~~~~--- 137 (186)
..+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+... -..+.++|+||+|+.+....
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 133 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID 133 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc
Confidence 356677999999210 0 1112345799999999987532110 11100 14578999999999765211
Q ss_pred -------cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 138 -------DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 138 -------~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..++..+..+.. ...+++++||++|.|++++++++.+..
T Consensus 134 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 134 HPGAVPITTVQGEELKKLI-GAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp C--CCCCCHHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHc-CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123333333333 234899999999999999999998754
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.48 E-value=8.1e-08 Score=72.97 Aligned_cols=104 Identities=21% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCccc-----
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAIG----- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~~~----- 136 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|++...... ..+... -..+.++|+||+|+.+...
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 151 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRREL 151 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHH
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhh
Confidence 56788999999310 0 112234579999999998743211 111100 1457899999999986510
Q ss_pred -------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 137 -------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 137 -------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
...++..+..+.. ...+++++||++|.|++++++++.+..
T Consensus 152 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 152 AKMKQEPVRSEEGRDMANRI-SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HTTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccCcCCHHHHHHHHHhC-CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0112222222332 234899999999999999999998754
No 122
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.47 E-value=8.5e-08 Score=85.24 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
.+.+-|++|+|-. ... ......+|.+++|+|++++...+.. .......+.++++||+|+.+. ..++..+.
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a---~~~~v~~e 148 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA---DVDRVKKQ 148 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC---CHHHHHHH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc---CHHHHHHH
Confidence 3567799999921 000 0112357999999999987543211 111234578999999999865 24444555
Q ss_pred HHhhCCC--CCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 146 ALRMRDG--GPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 146 l~~~~p~--a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+++.... .+++++||++|.|++++++++.+.+|.-
T Consensus 149 l~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 149 IEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 6554322 3699999999999999999999887653
No 123
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.47 E-value=8.7e-08 Score=69.85 Aligned_cols=104 Identities=17% Similarity=0.074 Sum_probs=65.9
Q ss_pred cCCcEEEEecCCCeeEE---eeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCc---ccc
Q 029893 72 FKADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASA---IGA 137 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~---~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~---~~~ 137 (186)
..+.+.|++|+|..--. ...+..+|.+++|+|+++...... .+. ..-..+.++|+||+|+.++ ...
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v 129 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKV 129 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCC
Confidence 35678999999931100 112245799999999987532110 000 0124578999999999754 111
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
..+...+..+.. ..+++++||++|.|++++++++.+.+
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 130 AREEGEKLAEEK--GLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222333333333 35899999999999999999987654
No 124
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=2.5e-07 Score=69.51 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=70.6
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
..+.+.|++|+|..-- ....+..+|.+++|+|+++..... ..+. ..-..+.++|+||+|+.+......+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 149 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE 149 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 4677899999992100 011234579999999998743211 0110 0124578999999999765322334
Q ss_pred HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 141 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 141 ~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
......+.. ..+++++||++|.|++++++++.+.+....
T Consensus 150 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 150 KGQLLAEQL--GFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 444444444 358999999999999999999988776543
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.46 E-value=4.1e-08 Score=75.65 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=69.5
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc---CCCCC-----CCceeEEEEecCCCCCc------
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA------ 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~-----~~~adiivlNK~Dl~~~------ 134 (186)
..+.+.|++|+|..- ..+..+..+|.+++|+|+++...... .+... -..+.++|+||+|+.++
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~ 152 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLME 152 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhh
Confidence 356788999999310 01122345799999999987543211 11111 14588999999999752
Q ss_pred ------ccccHHHHHHHHHhhCCCCCEEEEeccCCCC-HHHHHHHHHHHHHHhh
Q 029893 135 ------IGADLAVMERDALRMRDGGPFIFAQVKHGLG-VEEIVNHILQAWEAST 181 (186)
Q Consensus 135 ------~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g-i~~l~~~i~~~~~~~~ 181 (186)
.....+...+..+..+ ..+++++||++|.| ++++++++.+.+....
T Consensus 153 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 153 LSHQKQAPISYEQGCAIAKQLG-AEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred hcccccCccCHHHHHHHHHHcC-CCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 1122334444444442 33899999999998 9999999988765443
No 126
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.46 E-value=6.8e-09 Score=78.82 Aligned_cols=104 Identities=21% Similarity=0.203 Sum_probs=58.9
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc--CC------CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~--~~------~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+ ...-..+.++|+||+|+.+......+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~ 160 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT 160 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHH
Confidence 35788999999311 0 1122345799999999987543110 00 011245789999999997652111112
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.....+.. ..+++++||++|.|++++++++.+.+.
T Consensus 161 ~~~~~~~~--~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 161 AKEFADSL--GIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -CHHHHTT--TCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22223333 368999999999999999999876543
No 127
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.46 E-value=1.1e-07 Score=83.29 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=41.6
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. ... ...+..+|.+|+|+|++.+...... .......+.++|+||+|+.+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 46788999999931 000 1123457999999999987543211 112235688999999999754
No 128
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.45 E-value=5.4e-09 Score=83.80 Aligned_cols=104 Identities=30% Similarity=0.318 Sum_probs=67.2
Q ss_pred cCCcEEEEecCCCe-eEE---------eee-eecCceEEEEEeCCCCCCCccCC--CCCCC-ceeEEEEecCCCCCccc-
Q 029893 72 FKADLLLCESGGDN-LAA---------NFS-RELADYIIYIIDVSGGDKIPRKG--GPGIT-QADLLVINKTDLASAIG- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~---------~~~-~~~ad~~v~VvDa~~~~~~~~~~--~~~~~-~adiivlNK~Dl~~~~~- 136 (186)
.+..+.|++|+|.. ... .+. ...+|++++|+|++++......+ ..... .+.++|+||+|+.+...
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~ 127 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGA 127 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTC
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCccccc
Confidence 45679999999942 110 000 02479999999998753211100 01123 68899999999865321
Q ss_pred -ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 137 -ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 137 -~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
...+.+.+ .+ ..|++++||++|.|++++++++.+..+..
T Consensus 128 ~~~~~~l~~---~l--g~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 128 KIDIKKMRK---EL--GVPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CCCHHHHHH---HH--SSCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH---Hc--CCcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 22233322 22 36899999999999999999999887643
No 129
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.45 E-value=1.5e-07 Score=78.98 Aligned_cols=104 Identities=9% Similarity=0.059 Sum_probs=68.1
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCcc-C---CCCCCCcee-EEEEe-cCCCCCcccccHHHH
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR-K---GGPGITQAD-LLVIN-KTDLASAIGADLAVM 142 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~-~---~~~~~~~ad-iivlN-K~Dl~~~~~~~~~~~ 142 (186)
.+..+.|++|+|-. .... .....+|.+++|+| ..+...+. . .......+. ++++| |+|+ ++ ...+..
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~--~~~~~~ 133 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM--HAIDEL 133 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH--HHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH--HHHHHH
Confidence 35679999999931 0000 11245799999999 66543211 1 111234566 99999 9999 65 333433
Q ss_pred HHHHHhhC-----CCCCEEE--EeccC---CCCHHHHHHHHHHHHHH
Q 029893 143 ERDALRMR-----DGGPFIF--AQVKH---GLGVEEIVNHILQAWEA 179 (186)
Q Consensus 143 ~~~l~~~~-----p~a~i~~--~Sa~~---g~gi~~l~~~i~~~~~~ 179 (186)
.+.+++.. ...|+++ +||++ |+|+++|++++.+.++.
T Consensus 134 ~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 134 KAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 34444322 3469999 99999 99999999999988764
No 130
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.82 E-value=2.3e-08 Score=76.03 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=63.2
Q ss_pred cCCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCcc---CCCCCC-----CceeEEEEecCCCCCccc----
Q 029893 72 FKADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG---- 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~~~-----~~adiivlNK~Dl~~~~~---- 136 (186)
..+.+.|++|+|..- . ....+..+|.+++|+|+++...... .+...+ ..+.++|+||+|+.+...
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 155 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 155 (204)
Confidence 355666899999321 0 1122345799999999877543211 121111 457899999999986410
Q ss_pred --------ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 --------ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 --------~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
...+...+..+.. ...+++++||++|.|++++++++.+.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 156 LKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 0001111111111 22388999999999999999988754
No 131
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.43 E-value=1.4e-07 Score=80.92 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=60.4
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCC-------cc-C---CCCCCCce-eEEEEecCCCCCcc-
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKI-------PR-K---GGPGITQA-DLLVINKTDLASAI- 135 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~-------~~-~---~~~~~~~a-diivlNK~Dl~~~~- 135 (186)
.+..+.|++|+|-. ... ......+|++++|+|+.++... +. . ....+..+ .++++||+|+.+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 35679999999921 000 0122357999999999987421 10 1 11123445 68999999996421
Q ss_pred -cccHHHHHHH----HHhhC----CCCCEEEEeccCCCCHHHHHH
Q 029893 136 -GADLAVMERD----ALRMR----DGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 136 -~~~~~~~~~~----l~~~~----p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
....+...+. +++.. ...+++++||++|.|++++.+
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 0122233333 32222 146899999999999998544
No 132
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.42 E-value=1.1e-07 Score=70.91 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCCCCcc---------------CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhC-CC----CC
Q 029893 95 ADYIIYIIDVSGGDKIPR---------------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR-DG----GP 154 (186)
Q Consensus 95 ad~~v~VvDa~~~~~~~~---------------~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~-p~----a~ 154 (186)
+++++.|+|+........ ........+.++|+||+|+.+. . .+...+..++.+ +. .+
T Consensus 83 ~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 2cxx_A 83 IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN--V-QEVINFLAEKFEVPLSEIDKV 159 (190)
T ss_dssp CCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC--H-HHHHHHHHHHHTCCGGGHHHH
T ss_pred CCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc--H-HHHHHHHHHHhhhhhhccCCc
Confidence 467888888765321100 0001134678999999999876 2 222222223332 21 36
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHhhcc
Q 029893 155 FIFAQVKHGLGVEEIVNHILQAWEASTGK 183 (186)
Q Consensus 155 i~~~Sa~~g~gi~~l~~~i~~~~~~~~~~ 183 (186)
++++||++|.|++++++++.+.+...+++
T Consensus 160 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 160 FIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred EEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 89999999999999999999988877663
No 133
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=3.4e-07 Score=69.06 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=70.1
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCCCCCCcc---------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~~~~~~~---------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
..+.+.|++|+|..- .. ..+..+|.+++|+|+++...... .+...-..+.++|+||+|+.+......
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 152 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 152 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCH
Confidence 356788999999321 11 11235799999999987432110 011112457899999999976422233
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCC-CHHHHHHHHHHHHHHh
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGL-GVEEIVNHILQAWEAS 180 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~-gi~~l~~~i~~~~~~~ 180 (186)
+...+..+.. ..+++++||++|. |++++++++.+.+...
T Consensus 153 ~~~~~~~~~~--~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 153 EEGEKLATEL--ACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH--TSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 4444444444 3689999999999 9999999998877543
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.40 E-value=1.8e-07 Score=76.37 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=54.6
Q ss_pred eecCceEEEEEeCCCCC-CCc--cCCC---CCCCceeEEEEecCCCCCccccc---HHHHHHHHHhhCCCCCEEEEeccC
Q 029893 92 RELADYIIYIIDVSGGD-KIP--RKGG---PGITQADLLVINKTDLASAIGAD---LAVMERDALRMRDGGPFIFAQVKH 162 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~-~~~--~~~~---~~~~~adiivlNK~Dl~~~~~~~---~~~~~~~l~~~~p~a~i~~~Sa~~ 162 (186)
+..+|.+++|+|+++++ ... ..+. .....+.++|+||+||.++ .+ .++..+..++. ..+++++||++
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~--~~v~~~~~~~~~~~~~--g~~~~~~SA~~ 152 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE--EEKKELERWISIYRDA--GYDVLKVSAKT 152 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH--HHHHHHHHHHHHHHHT--TCEEEECCTTT
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc--cccHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 34679999999998764 211 1111 1134578999999999876 32 33344444443 35899999999
Q ss_pred CCCHHHHHHHHH
Q 029893 163 GLGVEEIVNHIL 174 (186)
Q Consensus 163 g~gi~~l~~~i~ 174 (186)
|.|+++|++.+.
T Consensus 153 g~gi~~L~~~l~ 164 (302)
T 2yv5_A 153 GEGIDELVDYLE 164 (302)
T ss_dssp CTTHHHHHHHTT
T ss_pred CCCHHHHHhhcc
Confidence 999999998764
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.40 E-value=5e-09 Score=84.38 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=66.2
Q ss_pred cCCcEEEEecCCCe-eE---Eeee-----------eecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LA---ANFS-----------RELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~---~~~~-----------~~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. .. .... ...+|++++|+|+++.+.... ........+.++|+||+|+.+.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 45689999999941 11 0010 135799999999987432110 0111235689999999998754
Q ss_pred cc--ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 135 IG--ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 135 ~~--~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.. ...+.+.+ .. ..|++++||++|.|++++++++.+.++
T Consensus 128 ~~~~~~~~~l~~---~l--g~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 128 QNIRIEIDALSA---RL--GCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp TTEEECHHHHHH---HH--TSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHH---hc--CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 21 12333322 22 268999999999999999999987654
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.37 E-value=2.8e-07 Score=79.80 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=58.1
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCcc--------C---CCCCCC-ceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR--------K---GGPGIT-QADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~--------~---~~~~~~-~adiivlNK~Dl~~~~~ 136 (186)
.+..+.|++|+|.. ... ...+..+|++++|+|++++..... . ....+. .+.++|+||+|+.+...
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence 46789999999931 000 012345899999999988632100 0 011123 24788999999987321
Q ss_pred ccHHHHHHHHHh----hC---CCCCEEEEeccCCCCHHH
Q 029893 137 ADLAVMERDALR----MR---DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 137 ~~~~~~~~~l~~----~~---p~a~i~~~Sa~~g~gi~~ 168 (186)
...+++.+.++. .. +..+++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 333333433332 22 146899999999999974
No 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.37 E-value=1.4e-07 Score=70.90 Aligned_cols=105 Identities=13% Similarity=-0.000 Sum_probs=67.7
Q ss_pred cCCcEEEEecCCCeeEE--eeeeecCceEEEEEeCCCCCCCc--cCCCC---------CCCceeEEEEecCCCCCccccc
Q 029893 72 FKADLLLCESGGDNLAA--NFSRELADYIIYIIDVSGGDKIP--RKGGP---------GITQADLLVINKTDLASAIGAD 138 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~--~~~~~~ad~~v~VvDa~~~~~~~--~~~~~---------~~~~adiivlNK~Dl~~~~~~~ 138 (186)
..+.+.|++|+|...-. ...+..+|.+++|+|+++..... ..+.. .-..+.++|+||+|+.+.....
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 146 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT 146 (187)
T ss_dssp EEEEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC
T ss_pred EEEEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC
Confidence 35678899999931100 11123579999999998643211 01100 0245789999999997542223
Q ss_pred HHHHHHHHHhhCCCCCEEEEec-cCCCCHHHHHHHHHHHHH
Q 029893 139 LAVMERDALRMRDGGPFIFAQV-KHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 139 ~~~~~~~l~~~~p~a~i~~~Sa-~~g~gi~~l~~~i~~~~~ 178 (186)
.++..+..++.+ .+++++|| ++|.|++++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~--~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 147 KAEGVALAGRFG--CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHT--CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 344455555543 58999999 899999999999987653
No 138
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.36 E-value=4.1e-07 Score=73.65 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred ecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHH
Q 029893 93 ELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~ 168 (186)
..+|+++.|+|+..+..... .+. -..+.++|+||+||++. ...+...+..++. ..+++++||++|.|+++
T Consensus 22 ~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~--~~~~~~~~~~~~~--g~~~i~iSA~~~~gi~~ 95 (282)
T 1puj_A 22 KLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA--AVTQQWKEHFENQ--GIRSLSINSVNGQGLNQ 95 (282)
T ss_dssp GGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH--HHHHHHHHHHHTT--TCCEEECCTTTCTTGGG
T ss_pred hhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH--HHHHHHHHHHHhc--CCcEEEEECCCcccHHH
Confidence 35799999999987654321 121 24688999999999976 4444444445432 34899999999999999
Q ss_pred HHHHHHHHHHHh
Q 029893 169 IVNHILQAWEAS 180 (186)
Q Consensus 169 l~~~i~~~~~~~ 180 (186)
+++.+.+.++..
T Consensus 96 L~~~i~~~l~~~ 107 (282)
T 1puj_A 96 IVPASKEILQEK 107 (282)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877643
No 139
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.34 E-value=9.3e-08 Score=80.94 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCce-eEEEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~a-diivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.|++|+|.. .... .....+|.+++|+|++++...+.. .......+ -++++||+|+.+.. ...+
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~-~~~~~~~ 151 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP-ELLDLVE 151 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH-HHHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH-HHHHHHH
Confidence 46789999999931 0000 112357999999999887532211 11123456 57899999998531 2222
Q ss_pred -HHHHHHHhhCC---CCCEEEEeccCCCC------------------HHHHHHHHHHHHH
Q 029893 141 -VMERDALRMRD---GGPFIFAQVKHGLG------------------VEEIVNHILQAWE 178 (186)
Q Consensus 141 -~~~~~l~~~~p---~a~i~~~Sa~~g~g------------------i~~l~~~i~~~~~ 178 (186)
++.+.++.... ..+++++||++|.| +++|++.+.+++|
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 23334444331 47999999999987 7888888887665
No 140
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.33 E-value=3e-07 Score=73.03 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=55.5
Q ss_pred cCceEEEEEeCCCC--CCCcc--CCC-------CCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccC
Q 029893 94 LADYIIYIIDVSGG--DKIPR--KGG-------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH 162 (186)
Q Consensus 94 ~ad~~v~VvDa~~~--~~~~~--~~~-------~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~ 162 (186)
.+|.+++|+|+++. ..... .+. ..-..+.++|+||+|+.+. ...+...+..+. ....+++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~-~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYIRDAHTFALS-KKNLQVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHHHHHHHHHHT-SSSCCEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHHHHHHHHHHh-cCCCeEEEEECCC
Confidence 47999999999875 32110 110 0123578999999999765 334444333333 2356999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 029893 163 GLGVEEIVNHILQAWE 178 (186)
Q Consensus 163 g~gi~~l~~~i~~~~~ 178 (186)
|.|++++++++.+.+.
T Consensus 239 g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLID 254 (255)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999987653
No 141
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.31 E-value=1.8e-07 Score=79.01 Aligned_cols=107 Identities=11% Similarity=0.111 Sum_probs=68.6
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCcee-EEEEecCCCCCcccccHH---
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQAD-LLVINKTDLASAIGADLA--- 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~ad-iivlNK~Dl~~~~~~~~~--- 140 (186)
.+..+.|++|+|.. ... ...+..+|.+++|+|++++...+.. .......+. ++++||+|+.++. ...+
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~-~~~~~~~ 142 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVE 142 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH-HHHHHHH
Confidence 46789999999921 000 0122357999999999987543211 111234564 7899999998531 2222
Q ss_pred -HHHHHHHhhC---CCCCEEEEeccCCCC----------HHHHHHHHHHHHHH
Q 029893 141 -VMERDALRMR---DGGPFIFAQVKHGLG----------VEEIVNHILQAWEA 179 (186)
Q Consensus 141 -~~~~~l~~~~---p~a~i~~~Sa~~g~g----------i~~l~~~i~~~~~~ 179 (186)
++.+.+++.. ...+++++||++|.| +++|++.+.+++|.
T Consensus 143 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 143 LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 3334444433 146999999999774 89999999887763
No 142
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.30 E-value=1.2e-06 Score=66.14 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=64.5
Q ss_pred CCcEEEEecCCCeeEE----eeeeecCceEEEEEeCCCCCCCc--c-------CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 73 KADLLLCESGGDNLAA----NFSRELADYIIYIIDVSGGDKIP--R-------KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~~~~~~ad~~v~VvDa~~~~~~~--~-------~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.+.+++++|.|..-.. +..+..+|..++|+|.++..... . .....-..+.++|.||+|+.+......
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~ 134 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV 134 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH
Confidence 4556788999831101 11223478999999997643211 0 011112357899999999975421222
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+......... ..+++++||++|.|++++++++.+.+..
T Consensus 135 ~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 135 SEGRAXAVVF--DXKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCceEEeccccCCCHHHHHHHHHHHHHh
Confidence 3322222222 3589999999999999999999887643
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.27 E-value=1.7e-07 Score=69.97 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=66.6
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCcc-----
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAI----- 135 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~~----- 135 (186)
..+.+.|++|+|... ..+..+..+|.+++|+|+++..... ..+... -..+.++|+||+|+.++.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~ 132 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVE 132 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhh
Confidence 356788999999310 0112234579999999998743211 111110 135789999999997531
Q ss_pred -------cccHHHHHHHHHhhCCCCCEEEEecc-CCCCHHHHHHHHHHHH
Q 029893 136 -------GADLAVMERDALRMRDGGPFIFAQVK-HGLGVEEIVNHILQAW 177 (186)
Q Consensus 136 -------~~~~~~~~~~l~~~~p~a~i~~~Sa~-~g~gi~~l~~~i~~~~ 177 (186)
....++..+..+..+ ..+++++||+ +|.|++++++++.+..
T Consensus 133 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 133 LSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 012233343444432 4589999999 6999999999988764
No 144
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.27 E-value=2.2e-07 Score=79.36 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=59.2
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCCCccC----CCCCCCc-eeEEEEecCCCCCcccccHHH---
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAIGADLAV--- 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~-adiivlNK~Dl~~~~~~~~~~--- 141 (186)
+..+.|++|+|.. .... ..+..+|.+++|+|+.++...+.. ....+.. +.++|+||+|+.+......+.
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~ 182 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKA 182 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHH
Confidence 4578999999931 0000 112457999999999987532211 1112333 468899999998631122222
Q ss_pred -HHHHHHhhC---CCCCEEEEeccCCCCHHH
Q 029893 142 -MERDALRMR---DGGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 142 -~~~~l~~~~---p~a~i~~~Sa~~g~gi~~ 168 (186)
+.+.++... +..+++++||++|.|+++
T Consensus 183 ~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 183 DYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 333334443 236899999999999987
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.27 E-value=4.3e-08 Score=86.07 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCe-eE--EeeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccccH-HHHHH
Q 029893 73 KADLLLCESGGDN-LA--ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADL-AVMER 144 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~--~~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~-~~~~~ 144 (186)
+..+.|++|+|-. .. ....+..+|++++|+|+.++...+.. +......+.++++||+|+.+...... ..+..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~ 130 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA 130 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHh
Confidence 4568899999921 00 01122457999999999987543211 11123457899999999975421111 11111
Q ss_pred H---HHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 145 D---ALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 145 ~---l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
. ...+....+++++||++|.|+++|++++....+.
T Consensus 131 ~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 131 YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 1 1111234589999999999999999999887653
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.27 E-value=2.2e-07 Score=79.41 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred cCCcEEEEecCCCee------EE------eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcc
Q 029893 72 FKADLLLCESGGDNL------AA------NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAI 135 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l------~~------~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~ 135 (186)
.+..+.+++|.|... .. ...++.+|++++|+|+..+..... .+......+.++|+||+|+.+.
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~- 125 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE- 125 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH-
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc-
Confidence 345688999999421 00 012346899999999987643211 1111124678999999998532
Q ss_pred cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 136 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 136 ~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
. .......+.+. ...+++++||++|.|++++++++.+.+++.
T Consensus 126 -~-~~~~~~~~~~l-g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 126 -F-EREVKPELYSL-GFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp -H-HHHTHHHHGGG-SSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -c-HHHHHHHHHhc-CCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 1 11121122222 234789999999999999999999988854
No 147
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.26 E-value=2.6e-06 Score=68.19 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=54.7
Q ss_pred cCceEEEEEeCCCCCCCcc-CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHH
Q 029893 94 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 172 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~-~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~ 172 (186)
.+|+++.|+|+..+..... ... .+..+.++|+||+||++. ...+...+.+++. ..++ ++||++|.|+++|++.
T Consensus 21 ~~D~vl~VvDar~P~~~~~~~l~-ll~k~~iivlNK~DL~~~--~~~~~~~~~~~~~--g~~v-~iSa~~~~gi~~L~~~ 94 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAYGVD-FSRKETIILLNKVDIADE--KTTKKWVEFFKKQ--GKRV-ITTHKGEPRKVLLKKL 94 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCTTSC-CTTSEEEEEEECGGGSCH--HHHHHHHHHHHHT--TCCE-EECCTTSCHHHHHHHH
T ss_pred hCCEEEEEeeCCCCCcCcChHHH-hcCCCcEEEEECccCCCH--HHHHHHHHHHHHc--CCeE-EEECCCCcCHHHHHHH
Confidence 5799999999987643321 111 227789999999999976 4455555555543 3467 9999999999999987
Q ss_pred HHH
Q 029893 173 ILQ 175 (186)
Q Consensus 173 i~~ 175 (186)
+.+
T Consensus 95 l~~ 97 (262)
T 3cnl_A 95 SFD 97 (262)
T ss_dssp CCC
T ss_pred HHH
Confidence 654
No 148
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.25 E-value=6.6e-08 Score=77.92 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCcEEEEecCCCe-eEE--------eeee--ecCceEEEEEeCCCCCCCccCCC---CCCCceeEEEEecCCCCCccc--
Q 029893 73 KADLLLCESGGDN-LAA--------NFSR--ELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIG-- 136 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--------~~~~--~~ad~~v~VvDa~~~~~~~~~~~---~~~~~adiivlNK~Dl~~~~~-- 136 (186)
+..+.|++|+|.. ... ...+ ..+|++++|+|+++..... .+. .....+.++|+||+|+.+...
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~-~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~ 126 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNL-YLTTQLIETGIPVTIALNMIDVLDGQGKK 126 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHH-HHHHHHHHTCSCEEEEEECHHHHHHTTCC
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHH-HHHHHHHhcCCCEEEEEEChhhCCcCCcH
Confidence 6789999999941 110 0011 1479999999998743211 111 113568999999999865311
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
...+.+.+ .+ ..|++++||++|+|++++++++.+..+
T Consensus 127 ~~~~~l~~---~l--g~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 127 INVDKLSY---HL--GVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CCHHHHHH---HH--TSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred HHHHHHHH---Hc--CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 12233322 22 358999999999999999999987543
No 149
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.25 E-value=1.1e-07 Score=83.34 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred cCCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCccCCCCC-----CCceeEEEEecCCCCCcccccHHHHH
Q 029893 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPRKGGPG-----ITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~~~~~~-----~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
.+..+.+++|+|..-. ....+..+|++++|+|++..+... .+..+ -..+.++|+||+|+.+......+.+.
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~ 174 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH-YWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKIN 174 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHH-HHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHH
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHH-HHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHH
Confidence 3688999999993100 111233579999999998753211 11000 13588999999999875322344444
Q ss_pred HHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 144 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 144 ~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+..... ..+++++||++|.|++++++++.+.+...
T Consensus 175 ~~~~~~--~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 175 ERFPAI--ENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HHCGGG--TTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred HHHHhc--CCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 444443 35899999999999999999998877643
No 150
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.24 E-value=8.3e-07 Score=73.76 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=67.6
Q ss_pred CcEEEEecCCCe--------eEEee--eeecCceEEEEEeCCCC---CCC---------ccCCCC-CCCceeEEEEecCC
Q 029893 74 ADLLLCESGGDN--------LAANF--SRELADYIIYIIDVSGG---DKI---------PRKGGP-GITQADLLVINKTD 130 (186)
Q Consensus 74 ~D~iiIEtsG~~--------l~~~~--~~~~ad~~v~VvDa~~~---~~~---------~~~~~~-~~~~adiivlNK~D 130 (186)
..++|++|+|.. +...| ....++++++|+|+++. +.. ...+.. ....+.++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 678999999921 00111 11237999999999863 111 011221 24568899999999
Q ss_pred CCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 131 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
+.+. . +.+.+..+.+....+++++||++++|+++++++|.+.+...+
T Consensus 286 l~~~--~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 286 MPEA--A--ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTH--H--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred CCCC--H--HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 9865 2 122222233332368999999999999999999998886543
No 151
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.23 E-value=2e-07 Score=75.70 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=64.2
Q ss_pred CCcEEEEecCCCeeEE------e----e------eeecCceEEEEEeCCC-CCCCcc-----CCCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNLAA------N----F------SRELADYIIYIIDVSG-GDKIPR-----KGGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~------~----~------~~~~ad~~v~VvDa~~-~~~~~~-----~~~~~~~~adiivlNK~D 130 (186)
+++++|++|+|..-.. . + .+..+|.+++|+|+.. +..... .+......+.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4789999999942100 0 0 1235799999999743 221111 111224568899999999
Q ss_pred CCCcccccHHHHHHHHHhh-CCCCCEEEEeccC---CCCHHHHHHHHHHHHHHh
Q 029893 131 LASAIGADLAVMERDALRM-RDGGPFIFAQVKH---GLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~-~p~a~i~~~Sa~~---g~gi~~l~~~i~~~~~~~ 180 (186)
+.+......+.+...+... .++.++..+||.+ +.|++++++.+.++++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 210 LMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp SSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9876211122222111111 2334556667777 899999999999888763
No 152
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.23 E-value=2e-07 Score=74.96 Aligned_cols=103 Identities=15% Similarity=-0.019 Sum_probs=63.9
Q ss_pred CCcEEEEecCCCeeEE----e------e------eeecCc-eEEEEEeCCCCCCCcc--CC---CCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNLAA----N------F------SRELAD-YIIYIIDVSGGDKIPR--KG---GPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~------~------~~~~ad-~~v~VvDa~~~~~~~~--~~---~~~~~~adiivlNK~D 130 (186)
.+++.|++|+|..-.. + + .+..++ ++++|+|++.+..... .+ ......+.++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 3799999999942100 0 0 112344 4457999987543221 11 1123457899999999
Q ss_pred CCCcccccHHHHHHHHHhh-C----CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 131 LASAIGADLAVMERDALRM-R----DGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~-~----p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
+.++. .... +.++.. . ++.+++++||++|.|++++++++.+..+.
T Consensus 204 l~~~~-~~~~---~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~ 253 (299)
T 2aka_B 204 LMDEG-TDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKF 253 (299)
T ss_dssp GSCTT-CCCH---HHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHH
T ss_pred cCCCC-chHH---HHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHH
Confidence 98752 1111 222221 1 24588999999999999999998876553
No 153
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.22 E-value=4.8e-08 Score=86.78 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=58.6
Q ss_pred cCCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCC-------CCcc-C---CCCCCCce-eEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGD-------KIPR-K---GGPGITQA-DLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~-------~~~~-~---~~~~~~~a-diivlNK~Dl~~~~~ 136 (186)
.+..+.|++|+|.. .... .....+|++|+|+|+.++. ..+. . ....+..+ .++|+||+|+.+...
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 35678999999932 1111 1223579999999998753 1111 0 01123444 677999999986311
Q ss_pred ccHHHHHHHHHhhC----C----CCCEEEEeccCCCCHH--------------HHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMR----D----GGPFIFAQVKHGLGVE--------------EIVNHILQAWE 178 (186)
Q Consensus 137 ~~~~~~~~~l~~~~----p----~a~i~~~Sa~~g~gi~--------------~l~~~i~~~~~ 178 (186)
...+.+...++... . ..+++++||++|.|+. .|++.|....+
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 33444444444322 1 3489999999999998 78888876544
No 154
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.21 E-value=9e-07 Score=66.82 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=64.2
Q ss_pred cCCcEEEEecCCCee-EE-----eeeeecCceEEEEEeCCCCCCCc-c---CCC-----CCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNL-AA-----NFSRELADYIIYIIDVSGGDKIP-R---KGG-----PGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l-~~-----~~~~~~ad~~v~VvDa~~~~~~~-~---~~~-----~~~~~adiivlNK~Dl~~~~~ 136 (186)
....+.|++|+|..- .. ...+..+|.+++|+|+++..... . .+. ..-..+.++|+||+|+.++..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhh
Confidence 467899999999311 01 12234589999999998751100 0 000 012458899999999987410
Q ss_pred --ccHHHH----HHHHHhh---CCCCCEEEEeccCCCCHHHHHHHHHHH
Q 029893 137 --ADLAVM----ERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQA 176 (186)
Q Consensus 137 --~~~~~~----~~~l~~~---~p~a~i~~~Sa~~g~gi~~l~~~i~~~ 176 (186)
.....+ ...+... ....+++++||++ .|++++++.+.+.
T Consensus 147 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 147 KIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 001111 1122221 2346899999999 9999999988764
No 155
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.20 E-value=2.9e-07 Score=74.72 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc---CCCC-----CCCceeEEEEecCCCCCcc------
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAI------ 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~---~~~~-----~~~~adiivlNK~Dl~~~~------ 135 (186)
.+.+.|++|+|..-- ....+..+|.+++|+|+++...... .+.. .-..+.++|+||+|+.+..
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 281 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKL 281 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhc
Confidence 455669999993110 1112345799999999987532111 1100 0146889999999997541
Q ss_pred ------cccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 136 ------GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 136 ------~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
....+...+..+.. ...+++++||++|.|++++++++.+.+.
T Consensus 282 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 282 KEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHc-CCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 01122233333332 2348999999999999999999987654
No 156
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.20 E-value=2.9e-07 Score=68.36 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCeeE-E---------e-eeeecCceEEEEEeCCCCCCCcc-CCCC------CCCceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDNLA-A---------N-FSRELADYIIYIIDVSGGDKIPR-KGGP------GITQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~-~---------~-~~~~~ad~~v~VvDa~~~~~~~~-~~~~------~~~~adiivlNK~Dl~~~ 134 (186)
+..+.+++|+|..-. . . ..+..+|.+++|+|+++...... .+.. ....+.++|+||+|+.++
T Consensus 51 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 51 GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcc
Confidence 345789999994210 0 0 12345799999999987654211 1110 123578999999999653
Q ss_pred ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 135 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 135 ~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
. ... .+. ...+++++||++|.|++++++++.+.+....
T Consensus 131 ~-~~~-------~~~-~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 168 (172)
T 2gj8_A 131 T-LGM-------SEV-NGHALIRLSARTGEGVDVLRNHLKQSMGFDT 168 (172)
T ss_dssp C-CEE-------EEE-TTEEEEECCTTTCTTHHHHHHHHHHHC----
T ss_pred h-hhh-------hhc-cCCceEEEeCCCCCCHHHHHHHHHHHhhhcc
Confidence 1 110 011 2458999999999999999999998776543
No 157
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.20 E-value=6e-08 Score=71.44 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=63.0
Q ss_pred CCcEEEEecCCCeeEE---------eeee--ecCceEEEEEeCCCCCCCccC--CCCCCCceeEEEEecCCCCCccc--c
Q 029893 73 KADLLLCESGGDNLAA---------NFSR--ELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIG--A 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~---------~~~~--~~ad~~v~VvDa~~~~~~~~~--~~~~~~~adiivlNK~Dl~~~~~--~ 137 (186)
+..+.+++|+|..--. ...+ ..+|++++|+|+++.+..... .......+.++|+||+|+.+... .
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 128 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI 128 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCC
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhh
Confidence 4578899999931100 0111 157899999999874321100 00112468899999999864311 1
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+.+.+. +..+ .+++++||++|.|++++++++.+.+
T Consensus 129 ~~~~~~---~~~~--~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 129 DVDKLE---KILG--VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CHHHHH---HHHT--SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred HHHHHH---HHhC--CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 222222 2232 5899999999999999999998754
No 158
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.20 E-value=3.2e-06 Score=70.85 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=55.5
Q ss_pred cCceEEEEEeCCCCCCCcc-CCCCCC-CceeEEEEecCCCCCcccccHHHHHHHH----HhhC-CCCCEEEEeccCCCCH
Q 029893 94 LADYIIYIIDVSGGDKIPR-KGGPGI-TQADLLVINKTDLASAIGADLAVMERDA----LRMR-DGGPFIFAQVKHGLGV 166 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~-~~~~~~-~~adiivlNK~Dl~~~~~~~~~~~~~~l----~~~~-p~a~i~~~Sa~~g~gi 166 (186)
.+++++.|+|+++.+.... .....+ ..+.++|+||+||.+.. ...+.+.+++ ++.. +..+++.+||++|.|+
T Consensus 71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp HCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTH
T ss_pred cCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCH
Confidence 4689999999988653211 000011 45789999999998652 2233333333 3222 1247999999999999
Q ss_pred HHHHHHHHHHHH
Q 029893 167 EEIVNHILQAWE 178 (186)
Q Consensus 167 ~~l~~~i~~~~~ 178 (186)
++|++.+.++.+
T Consensus 150 ~~L~~~I~~~~~ 161 (369)
T 3ec1_A 150 AKVMEAINRYRE 161 (369)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc
Confidence 999999987653
No 159
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.19 E-value=1.4e-06 Score=78.71 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=68.0
Q ss_pred CcEEEEecCCCeeEE-----e-eeeecCceEEEEEeCCCCCCCcc-----CCCCCCCceeEEEEecCCCCCcc---cc--
Q 029893 74 ADLLLCESGGDNLAA-----N-FSRELADYIIYIIDVSGGDKIPR-----KGGPGITQADLLVINKTDLASAI---GA-- 137 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~-----~-~~~~~ad~~v~VvDa~~~~~~~~-----~~~~~~~~adiivlNK~Dl~~~~---~~-- 137 (186)
.++.||+|+|+.-.. . ..+..+|++++|+|++++..... ........+.++|+||+|+.+.. ..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 589999999942100 0 11235899999999987643211 11222345789999999997541 01
Q ss_pred -cHHH----HHH----HHHhhC-------CCCCEEEEecc--------------CCCCHHHHHHHHHHHHHHhh
Q 029893 138 -DLAV----MER----DALRMR-------DGGPFIFAQVK--------------HGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 138 -~~~~----~~~----~l~~~~-------p~a~i~~~Sa~--------------~g~gi~~l~~~i~~~~~~~~ 181 (186)
.++. +.+ .+.... ...+++++||+ +|.|++++++++.+.+...+
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 1221 211 122211 23489999999 99999999999988775433
No 160
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.19 E-value=2.2e-07 Score=79.42 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=61.9
Q ss_pred cCCcEEEEecCCCeeEE-----e------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAA-----N------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~-----~------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+..+.+++|.|..... . ..++.+|++++|+|+..+..... .+......+.++|+||+|+.+..
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~- 127 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR- 127 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccch-
Confidence 46689999999942110 0 12345799999999988654221 11122456899999999997541
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
... .+ ..+. ...+++++||++|.|+++|++++.+.+++
T Consensus 128 ~~~---~~-~~~l-g~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 128 ANI---YD-FYSL-GFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp -CC---CS-SGGG-SSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred hhH---HH-HHHc-CCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 111 11 1122 22378999999999999999999988764
No 161
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.18 E-value=3.4e-07 Score=70.11 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCc---cCCCCC-----CCceeEEEEecCCCCCcc------
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAI------ 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~---~~~~~~-----~~~adiivlNK~Dl~~~~------ 135 (186)
.+.+.|++|+|... ..+..+..+|.+++|+|+++..... ..+... -..+.++|+||+|+.+..
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~ 154 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 154 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhh
Confidence 56788999999310 0112234579999999998753211 111110 135789999999997520
Q ss_pred ------cccHHHHHHHHHhhCCCCCEEEEecc-CCCCHHHHHHHHHHHH
Q 029893 136 ------GADLAVMERDALRMRDGGPFIFAQVK-HGLGVEEIVNHILQAW 177 (186)
Q Consensus 136 ------~~~~~~~~~~l~~~~p~a~i~~~Sa~-~g~gi~~l~~~i~~~~ 177 (186)
....++..+..+..+ ..+++++||+ +|.|++++++++.+..
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 155 SNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHcC-CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 012233333344432 3589999999 6899999999988754
No 162
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.17 E-value=2.2e-06 Score=71.80 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=53.7
Q ss_pred cCceEEEEEeCCCCCCCccCCCCC-----CCceeEEEEecCCCCCcccccHHHHHHHH----HhhC-CCCCEEEEeccCC
Q 029893 94 LADYIIYIIDVSGGDKIPRKGGPG-----ITQADLLVINKTDLASAIGADLAVMERDA----LRMR-DGGPFIFAQVKHG 163 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~~~~~~-----~~~adiivlNK~Dl~~~~~~~~~~~~~~l----~~~~-p~a~i~~~Sa~~g 163 (186)
.++++++|+|+++.+. .+... -..+.++|+||+||.+.. ...+.+.+++ ++.. +..+++.+||++|
T Consensus 69 ~~~~il~VvD~~d~~~---~~~~~l~~~~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g 144 (368)
T 3h2y_A 69 SDALVVKIVDIFDFNG---SWLPGLHRFVGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKG 144 (368)
T ss_dssp SCCEEEEEEETTSHHH---HCCTTHHHHSSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHHHTTCCCSEEEECCTTTC
T ss_pred cCcEEEEEEECCCCcc---cHHHHHHHHhCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHHHcCCCcccEEEEeCCCC
Confidence 3579999999987432 11111 145789999999998652 2223333332 2222 1237999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029893 164 LGVEEIVNHILQAW 177 (186)
Q Consensus 164 ~gi~~l~~~i~~~~ 177 (186)
.|++++++.+.++.
T Consensus 145 ~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 145 QGIAELADAIEYYR 158 (368)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred cCHHHHHhhhhhhc
Confidence 99999999998765
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.1e-07 Score=82.88 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCC-------CCcc-C---CCCCCCc-eeEEEEecCCCCCcccc
Q 029893 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGD-------KIPR-K---GGPGITQ-ADLLVINKTDLASAIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~-------~~~~-~---~~~~~~~-adiivlNK~Dl~~~~~~ 137 (186)
+..+.|++|+|..- . ....+..+|++|+|+|++++. ..+. . ....+.. +.++|+||+|+.+....
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 56899999999310 0 011234589999999998742 0000 0 0111232 47888999999873212
Q ss_pred cHHHHHHHH----HhhC---CCCCEEEEeccCCCCHHHH
Q 029893 138 DLAVMERDA----LRMR---DGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 138 ~~~~~~~~l----~~~~---p~a~i~~~Sa~~g~gi~~l 169 (186)
..+.+.+.+ +... ...+++++||++|.|++++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 233333333 3322 1479999999999999865
No 164
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.15 E-value=1.1e-07 Score=75.37 Aligned_cols=105 Identities=9% Similarity=0.048 Sum_probs=66.0
Q ss_pred cCCcEEEEecCCCeeE-Ee-------------eeeecCceEEEEEeCCCCCCCccC--------CCCCCCceeEEEEe-c
Q 029893 72 FKADLLLCESGGDNLA-AN-------------FSRELADYIIYIIDVSGGDKIPRK--------GGPGITQADLLVIN-K 128 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-~~-------------~~~~~ad~~v~VvDa~~~~~~~~~--------~~~~~~~adiivlN-K 128 (186)
.+..+.|++|+|..-. .. ..+..+|.+++|+|++........ +......+.++|+| |
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 4678999999994100 00 022457999999999862211100 11112457888888 9
Q ss_pred CCCCCcccccHHH---------HHHHHHhhCC----CCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 129 TDLASAIGADLAV---------MERDALRMRD----GGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 129 ~Dl~~~~~~~~~~---------~~~~l~~~~p----~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+|+.+. .... +.+.++.... +.+ +++||++|.|++++++++.+.++..
T Consensus 149 ~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 149 EDLNGG---SLMDYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp GGGTTC---CHHHHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCc---cHHHHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhC
Confidence 999854 2222 2223333321 333 7899999999999999999888763
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.15 E-value=1.2e-07 Score=82.60 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=63.1
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
+..+.|++|+|-. ... ......+|.+++|+|+.++...+.. +......+.++++||+|+.+..... +...
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~---v~~~ 126 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR---VKNE 126 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC---TTCC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH---HHHH
Confidence 4568899999931 000 0112347999999999886433211 1112345789999999997531111 1111
Q ss_pred HH-------hhCCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 146 AL-------RMRDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 146 l~-------~~~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
+. .+....+++++||++|.|+++|++++..
T Consensus 127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 127 LSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 11 1112368999999999999999999864
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.12 E-value=3.1e-06 Score=70.84 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCcEEEEecCCC-e-eE----Eee-----eeecCceEEEEEeCCCCC--CCc-----cC---CCCCCCceeEEEEecCCC
Q 029893 73 KADLLLCESGGD-N-LA----ANF-----SRELADYIIYIIDVSGGD--KIP-----RK---GGPGITQADLLVINKTDL 131 (186)
Q Consensus 73 ~~D~iiIEtsG~-~-l~----~~~-----~~~~ad~~v~VvDa~~~~--~~~-----~~---~~~~~~~adiivlNK~Dl 131 (186)
+..+.+++|+|. . +. ..+ .+..+|++++|+|+++.. ... .. .......+.++|.||+|+
T Consensus 225 g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 225 NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK 304 (364)
T ss_dssp TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG
T ss_pred CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC
Confidence 456789999993 1 00 001 123579999999998754 110 00 001124578999999999
Q ss_pred CCcccccHH---HHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 132 ASAIGADLA---VMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 132 ~~~~~~~~~---~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.+. .... .+....+.. .+..+++++||++|.|+++++++|.+.+..
T Consensus 305 ~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 305 ING--DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CCS--CHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 875 2111 121122444 344578999999999999999999887654
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.11 E-value=1.3e-06 Score=82.42 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=67.6
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC-C---CCCCCce-eEEEEecCCCCCcccccH----
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK-G---GPGITQA-DLLVINKTDLASAIGADL---- 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~-~---~~~~~~a-diivlNK~Dl~~~~~~~~---- 139 (186)
.+..+.|++|+|-. ... ...+..+|.+|+|+|++++...+.. + ......+ .++++||+|+.+.. ...
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~-e~le~i~ 435 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE-ELLELVE 435 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH-HHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch-hhHHHHH
Confidence 45788999999921 000 0112357999999999987543211 1 1123446 47899999998641 222
Q ss_pred HHHHHHHHhhC---CCCCEEEEeccCC--------CCHHHHHHHHHHHHH
Q 029893 140 AVMERDALRMR---DGGPFIFAQVKHG--------LGVEEIVNHILQAWE 178 (186)
Q Consensus 140 ~~~~~~l~~~~---p~a~i~~~Sa~~g--------~gi~~l~~~i~~~~~ 178 (186)
+++.+.+++.. ...+++++||++| .|+++|++.+.++++
T Consensus 436 eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23333444433 2479999999999 578999998887655
No 168
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.11 E-value=3.4e-07 Score=83.26 Aligned_cols=100 Identities=16% Similarity=0.051 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCeeEE----e-------------eeeecCceEEEEEeCCCCCCCccC-----CCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNLAA----N-------------FSRELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~-------------~~~~~ad~~v~VvDa~~~~~~~~~-----~~~~~~~adiivlNK~D 130 (186)
.++++||+|+|+.-.. | +....+|++++|+|+..+...... .......+.++|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 4679999999953211 1 111246899999999876432221 11223568999999999
Q ss_pred CCCcccccHHHHHHHHHhh----CCCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 131 LASAIGADLAVMERDALRM----RDGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~----~p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
++++. .....+.. .+. .++.+++++||++|.|+++|++.+.+
T Consensus 229 lv~~~-~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 229 LMDEG-TDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SSCTT-CCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCcc-hhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 99762 12122211 111 24568999999999999999999886
No 169
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.10 E-value=1.2e-07 Score=80.94 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=65.5
Q ss_pred cEEEEecCCCeeEE---ee-------eeecCceEEEEEeCCCCCCCccCC---CCCCCceeEEEEecCCCCCcccccHHH
Q 029893 75 DLLLCESGGDNLAA---NF-------SRELADYIIYIIDVSGGDKIPRKG---GPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 75 D~iiIEtsG~~l~~---~~-------~~~~ad~~v~VvDa~~~~~~~~~~---~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.|++|+|..--. .. .+..+|.+++|+|+.. ......+ ......+.++|+||+|+.++ ... +
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~-~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~--~~~-~ 159 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP-TPYEDDVVNLFKEMEIPFVVVVNKIDVLGE--KAE-E 159 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC-CHHHHHHHHHHHHTTCCEEEECCCCTTTTC--CCT-H
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC-hHHHHHHHHHHHhcCCCEEEEEeCcCCCCc--cHH-H
Confidence 78999999941100 00 1234799999999822 1111111 11235688999999999876 332 2
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+.+.+.. ..+++++||++|.|++++++++.+.++.
T Consensus 160 ~~~~l~~~~-g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 160 LKGLYESRY-EAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HHHHSSCCT-TCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHc-CCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 223333222 3699999999999999999999988743
No 170
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.08 E-value=1.8e-06 Score=77.86 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=41.7
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. ... ...+..+|.+++|+|++++...... .......+.++|+||+|+...
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 36789999999931 000 0122357999999999987643211 112235688999999999864
No 171
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.07 E-value=5.6e-06 Score=74.89 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+++.||+|+|-. ... ...+..+|.+|+|+|++++...+.. .......+.++++||+|+...
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 4889999999921 000 0122357999999999987543211 111234578999999999764
No 172
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.05 E-value=9.5e-07 Score=75.50 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=58.3
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCC-------CCCcc-CC---CCCCCc-eeEEEEecCCCCCcc-
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGG-------DKIPR-KG---GPGITQ-ADLLVINKTDLASAI- 135 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~-------~~~~~-~~---~~~~~~-adiivlNK~Dl~~~~- 135 (186)
.+..+.|++|+|.. ... ...+..+|.+++|+|+.++ ...+. .+ ...+.. +.++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 46789999999931 000 0123457999999999885 11110 00 111233 367899999998731
Q ss_pred -cccHH----HHHHHHHhhC--C-CCCEEEEeccCCCCHHH
Q 029893 136 -GADLA----VMERDALRMR--D-GGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 136 -~~~~~----~~~~~l~~~~--p-~a~i~~~Sa~~g~gi~~ 168 (186)
....+ ++.+.++... + ..+++++||++|.|+.+
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 12222 3333343332 2 36899999999999973
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.01 E-value=2.4e-06 Score=73.67 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCcEEEEecCCCe-eEEe--eeeecCceEEEEEeCCCCCC-------Ccc-C---CCCCCCce-eEEEEecCCCCCcc--
Q 029893 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDK-------IPR-K---GGPGITQA-DLLVINKTDLASAI-- 135 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~--~~~~~ad~~v~VvDa~~~~~-------~~~-~---~~~~~~~a-diivlNK~Dl~~~~-- 135 (186)
+..+.|++|+|-. .... ..+..+|.+++|+|+.++.. .+. . .......+ .++++||+|+.+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 5678999999921 0011 11234799999999998731 010 0 01123445 68899999996421
Q ss_pred cccHH----HHHHHHHhh-C-C---CCCEEEEeccCCCCHHHHH
Q 029893 136 GADLA----VMERDALRM-R-D---GGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 136 ~~~~~----~~~~~l~~~-~-p---~a~i~~~Sa~~g~gi~~l~ 170 (186)
.+..+ ++.+.++.. . . ..+++++||++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 01222 334444443 1 1 4689999999999998643
No 174
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.99 E-value=2.3e-07 Score=69.11 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=65.5
Q ss_pred CCcEEEEecCCCeeEEe---------eee--ecCceEEEEEeCCCCCCCcc--CCCCCCCceeEEEEecCCCCCccc--c
Q 029893 73 KADLLLCESGGDNLAAN---------FSR--ELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG--A 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~---------~~~--~~ad~~v~VvDa~~~~~~~~--~~~~~~~~adiivlNK~Dl~~~~~--~ 137 (186)
+..+.+++|+|..--.+ ..+ ..+|++++|+|+++...... ........+.++|+||+|+.+... .
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 132 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI 132 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCC
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchH
Confidence 56788999999321000 011 13789999999876322110 000113457899999999865311 1
Q ss_pred cHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 138 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 138 ~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
..+.+. +..+ .+++++||++|.|++++++++.+.++...
T Consensus 133 ~~~~~~---~~~~--~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 133 DVDKLE---KILG--VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CHHHHH---HHHT--SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred HHHHHH---HHhC--CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 222222 2332 58999999999999999999998876543
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.99 E-value=3.3e-07 Score=78.96 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=58.0
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCC-------cc-C---CCCCCCce-eEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKI-------PR-K---GGPGITQA-DLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~-------~~-~---~~~~~~~a-diivlNK~Dl~~~~~ 136 (186)
.+..+.|++|+|-. ... ...+..+|++++|+|+.++... +. . .......+ .++++||+|+.+...
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 35679999999921 000 0123457999999999875210 10 0 11123344 678999999984211
Q ss_pred ccHHHH----HHHHHhhCC---CCCEEEEeccCCCCHHH
Q 029893 137 ADLAVM----ERDALRMRD---GGPFIFAQVKHGLGVEE 168 (186)
Q Consensus 137 ~~~~~~----~~~l~~~~p---~a~i~~~Sa~~g~gi~~ 168 (186)
...+.. .+.++...- ..+++++||++|.|+.+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 223333 333333321 37999999999999974
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.97 E-value=3.5e-06 Score=76.03 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=41.4
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. ... ...+..+|.+++|+|++++...... .......+.++|+||+|+.+.
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 36789999999931 000 0122357999999999887542211 111235688999999999865
No 177
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.97 E-value=2e-06 Score=68.80 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=44.2
Q ss_pred CceEEEEEeCCC-CCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhh--CCCCCEEEEeccCCCCHH
Q 029893 95 ADYIIYIIDVSG-GDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 95 ad~~v~VvDa~~-~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~--~p~a~i~~~Sa~~g~gi~ 167 (186)
+|.++++++.+. +..... ..... ..+.++|+||+|+.+. .+.....+.+++. ....+++++||++++|++
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~ 192 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN 192 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC---------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHH
Confidence 467888887654 322111 11111 5689999999999876 5555444444322 134688999999999999
Q ss_pred HHHHHHHHHHHH
Q 029893 168 EIVNHILQAWEA 179 (186)
Q Consensus 168 ~l~~~i~~~~~~ 179 (186)
++++++.+.+|.
T Consensus 193 ~l~~~l~~~~p~ 204 (274)
T 3t5d_A 193 KLVKKIKDRLPL 204 (274)
T ss_dssp --CHHHHHTCSE
T ss_pred HHHHHHhcCCCc
Confidence 999999887654
No 178
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.94 E-value=8.4e-07 Score=77.33 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHHHHhc-CCcEEEEEcccC-Cc-hhHH--HHHhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCc
Q 029893 2 LALCKFLRD-KYSLAAVTNDIF-TK-EDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g-~~-iD~~--~i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D 75 (186)
.+|+.++.. ++|++++-.|.. .. +|.. .-.+.++ .+....++. |....+ +++..+ ...++|
T Consensus 119 ~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i----~v~~~~~~~--------dp~~i~~~al~~~-~~~~~D 185 (504)
T 2j37_W 119 SKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI----PFYGSYTEM--------DPVIIASEGVEKF-KNENFE 185 (504)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTC----CEEECCCCS--------CHHHHHHHHHHHH-HHTTCC
T ss_pred HHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCc----eEEccCCCC--------CHHHHHHHHHHHH-HHCCCc
Confidence 355666665 489999999986 32 2311 1122233 233321211 111111 334433 246899
Q ss_pred EEEEecCCCeeE-Eee--------eeecCceEEEEEeCCCCCCCccCCCCCCC--ce-eEEEEecCCCCCcccccHHHHH
Q 029893 76 LLLCESGGDNLA-ANF--------SRELADYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 76 ~iiIEtsG~~l~-~~~--------~~~~ad~~v~VvDa~~~~~~~~~~~~~~~--~a-diivlNK~Dl~~~~~~~~~~~~ 143 (186)
++||+|+|..-. ..+ ....+|.+++|+|+..+.... .....+. .+ ..+|+||+|........+. +.
T Consensus 186 vvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~-~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~-~~ 263 (504)
T 2j37_W 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE-AQAKAFKDKVDVASVIVTKLDGHAKGGGALS-AV 263 (504)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH-HHHHHHHHHHCCCCEEEECTTSCCCCTHHHH-HH
T ss_pred EEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH-HHHHHHHhhcCceEEEEeCCccccchHHHHH-HH
Confidence 999999994210 011 011358899999998874311 1111121 34 5899999998754211111 22
Q ss_pred HHH-------------HhhCCCCCEEEEeccCCCC-HHHHHHHHHHH
Q 029893 144 RDA-------------LRMRDGGPFIFAQVKHGLG-VEEIVNHILQA 176 (186)
Q Consensus 144 ~~l-------------~~~~p~a~i~~~Sa~~g~g-i~~l~~~i~~~ 176 (186)
... ..+.++.|++++|+++|.| +++|++++.+.
T Consensus 264 ~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 264 AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 111 1123455667789999999 99999999876
No 179
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.93 E-value=4.1e-06 Score=73.72 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=42.3
Q ss_pred hcCCcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 71 LFKADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
..+..+=||+|+| .. -| ....+|.+|+|+|+.+|-+.+.. .......+-++++||+|....
T Consensus 97 ~~~~~iNlIDTPG-Hv--DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 97 YRDRVVNLLDTPG-HQ--DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp ETTEEEEEECCCC-GG--GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred ECCEEEEEEeCCC-cH--HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 3467788999999 22 22 12346999999999998764321 122345588999999998764
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.93 E-value=1.2e-05 Score=70.46 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=41.8
Q ss_pred cCCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCc
Q 029893 72 FKADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~ 134 (186)
.+..+.|++|+|.. ... ...+..+|.+|+|+|++.+..... ........+.++++||+|+.+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 46789999999931 110 012345799999999998754221 1122345678999999999765
No 181
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.89 E-value=3.9e-06 Score=72.02 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=61.6
Q ss_pred cCCcEEEEecCCCeeE-Ee----------eeeecCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLA-AN----------FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-~~----------~~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.+..+.+++|.|+... .. ..++.+|++++|+|+..+..... .+......+.++|+||+|+.+.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~-- 146 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM-- 146 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-------
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhh--
Confidence 4678999999994311 00 12235799999999987643221 1122345689999999998754
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
. ....+.. +. ...+.+++||++|.|+.++++.+.+.++.
T Consensus 147 ~--~~~~e~~-~l-g~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 147 R--ANIYDFY-SL-GFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp ------CCSG-GG-SSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred h--hhHHHHH-Hc-CCCceEEeecccccchHHHHHHHHhhccc
Confidence 1 1111111 11 23467899999999999999999877653
No 182
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.87 E-value=4.9e-06 Score=73.26 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=60.1
Q ss_pred EEEEEcccC-CchhHHHHHhcCCCCcCceEecc-------CCC-cccCCcccccccCcchhHhhhhhcCCcEEEEecCCC
Q 029893 14 LAAVTNDIF-TKEDGEFLMRNGALPEERIRAVE-------TGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 84 (186)
Q Consensus 14 vaVi~nd~g-~~iD~~~i~~~~~~~~~~~~~l~-------~Gc-cc~l~~r~d~~~~~~~l~~l~~~~~~D~iiIEtsG~ 84 (186)
.+|+.|+++ +..|..++...+. .+.+|+ +|| ||++ +++ +. ..++||+|+|.
T Consensus 105 ~~i~~~~~~~i~~g~~l~~~~~~----~~~~L~~~g~~~~~~~~~~~~--~~~----------ll----~~l~lIDTPG~ 164 (550)
T 2qpt_A 105 VAVMHGETEGTVPGNALVVDPEK----PFRKLNPFGNTFLNRFMCAQL--PNQ----------VL----ESISIIDTPGI 164 (550)
T ss_dssp EEEECCSSSEEECCC----------------------CCCTTEEEEEC--CCH----------HH----HHCEEEECCCB
T ss_pred EEEEECCcccccCCceeeecCcc----cHHHHhhhcccccccceEEec--ccc----------cc----CCEEEEECcCC
Confidence 577777777 5566555432211 233333 788 8875 211 11 14789999994
Q ss_pred ee------EEe--e------eeecCceEEEEEeCCCCCCCc-----cCCCCCCCceeEEEEecCCCCCcccccHHHHHHH
Q 029893 85 NL------AAN--F------SRELADYIIYIIDVSGGDKIP-----RKGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (186)
Q Consensus 85 ~l------~~~--~------~~~~ad~~v~VvDa~~~~~~~-----~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~ 145 (186)
.- ... + ....+|.+++|+|+.+..... .....+...+.++|+||+|+++. .++.++...
T Consensus 165 ~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 165 LSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp CC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred CCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH--HHHHHHHHH
Confidence 21 000 1 122469999999997732111 11123345689999999999976 566655555
Q ss_pred H
Q 029893 146 A 146 (186)
Q Consensus 146 l 146 (186)
+
T Consensus 243 l 243 (550)
T 2qpt_A 243 L 243 (550)
T ss_dssp H
T ss_pred h
Confidence 4
No 183
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.83 E-value=1.3e-06 Score=72.55 Aligned_cols=102 Identities=14% Similarity=-0.031 Sum_probs=62.0
Q ss_pred CCcEEEEecCCCeeEE----e------e------ee-ecCceEEEEEeCCCCCCCccC--C---CCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNLAA----N------F------SR-ELADYIIYIIDVSGGDKIPRK--G---GPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~------~------~~-~~ad~~v~VvDa~~~~~~~~~--~---~~~~~~adiivlNK~D 130 (186)
.++++|++|+|+.-.. + + .+ ...+++++|+|+......... . ......+.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 4789999999942100 1 0 11 123677888888654322110 1 1112457899999999
Q ss_pred CCCcccccHHHHHHHHHh-hC----CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 131 LASAIGADLAVMERDALR-MR----DGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~-~~----p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+.++. ..... .++. .. ++.+++++||++|.|++++++++.+..+
T Consensus 209 l~~~~-~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~ 257 (353)
T 2x2e_A 209 LMDEG-TDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 257 (353)
T ss_dssp GSCTT-CCCHH---HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHH
T ss_pred ccCcc-hhHHH---HHhCCcccccCCceEEEeCCcccccccccHHHHHHHHHH
Confidence 98652 11121 2221 12 2457889999999999999999887443
No 184
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.74 E-value=3e-05 Score=60.35 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=55.2
Q ss_pred eecCceEEEEEeCCCCCCCcc--------C-C-CC-C-CCceeEEEEecC-CCCCcccccHHHHHHHH--HhhCCCCCEE
Q 029893 92 RELADYIIYIIDVSGGDKIPR--------K-G-GP-G-ITQADLLVINKT-DLASAIGADLAVMERDA--LRMRDGGPFI 156 (186)
Q Consensus 92 ~~~ad~~v~VvDa~~~~~~~~--------~-~-~~-~-~~~adiivlNK~-Dl~~~~~~~~~~~~~~l--~~~~p~a~i~ 156 (186)
+...|.+|+|||+++.+.... . . .. . -..+-+|+.||. |+... ....++.+.+ .++.....|.
T Consensus 123 y~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~L~L~~l~R~W~Iq 200 (227)
T 3l82_B 123 CEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELHLNLLNHPWLVQ 200 (227)
T ss_dssp HHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHHTTGGGGCSCEEEE
T ss_pred hcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHHcCCcCCCCCEEEE
Confidence 345799999999986532111 0 1 11 1 234667777996 78655 3444555443 2333345899
Q ss_pred EEeccCCCCHHHHHHHHHHHH
Q 029893 157 FAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 157 ~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
.+||+||+|+.+-++|+.+.+
T Consensus 201 ~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 201 DTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp EEETTTCTTHHHHHHHHTTTT
T ss_pred EeECCCCcCHHHHHHHHHHHH
Confidence 999999999999999998655
No 185
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.73 E-value=1.6e-05 Score=64.69 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=62.2
Q ss_pred CCcEEEEecCCCe-eE-------EeeeeecCceEEEEEeCCCCCCCcc--CC---CC-----CCCceeEEEEecCCCCCc
Q 029893 73 KADLLLCESGGDN-LA-------ANFSRELADYIIYIIDVSGGDKIPR--KG---GP-----GITQADLLVINKTDLASA 134 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~-------~~~~~~~ad~~v~VvDa~~~~~~~~--~~---~~-----~~~~adiivlNK~Dl~~~ 134 (186)
+..+.|++|+|.. .. ....+..+|++++|+|+++...... .+ .. .-..+.++|+||+|+.++
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 6788999999931 10 0011245799999999988642110 01 00 114689999999999873
Q ss_pred ccccH--------HHHHHHHHhhC-CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 135 IGADL--------AVMERDALRMR-DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 135 ~~~~~--------~~~~~~l~~~~-p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
... +...+..+... |..+++++||++ .|+.+.+..+.+
T Consensus 131 --~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 131 --DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHH
Confidence 122 22222233332 247999999999 788888776543
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.73 E-value=1.3e-05 Score=71.98 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=38.4
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~ 132 (186)
...+.|++|.|.. ... ...+..+|..++|+|++++...... .......+.++++||+|+.
T Consensus 73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 5678889999921 000 0122357999999999887543211 1112346789999999997
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.70 E-value=2.8e-05 Score=58.81 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=56.0
Q ss_pred cCceEEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccH----HHHHHHHHhhCCCCCEEEEeccCCCC
Q 029893 94 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADL----AVMERDALRMRDGGPFIFAQVKHGLG 165 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~----~~~~~~l~~~~p~a~i~~~Sa~~g~g 165 (186)
.++.+++++|+..+..... .+......+.+++.||+|+.+. .+. ..+...+++.....+++++||+++.|
T Consensus 108 ~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 108 SLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS--GARKAQLNMVREAVLAFNGDVQVETFSSLKKQG 185 (210)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH--HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred cccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc--hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence 3577899999987543211 1111234577889999999875 322 23333344333346789999999999
Q ss_pred HHHHHHHHHHHHHH
Q 029893 166 VEEIVNHILQAWEA 179 (186)
Q Consensus 166 i~~l~~~i~~~~~~ 179 (186)
++++++++.+..+.
T Consensus 186 ~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 186 VDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 188
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.69 E-value=1.4e-05 Score=66.81 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc-------------------CCCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR-------------------KGGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~-------------------~~~~~~~~adiivlNK~D 130 (186)
+..+-+.+|.|-.-- .+..++.++.+|+|+|.++.++... .....-..+.++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 567888899992100 1123456899999999998542110 000112358899999999
Q ss_pred CCCcc----------------cccHHHHHHHHH----hhC-----CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 131 LASAI----------------GADLAVMERDAL----RMR-----DGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 131 l~~~~----------------~~~~~~~~~~l~----~~~-----p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
|.++. ....++..+.++ .++ ....+++|||++|+|++++|+++.+..-
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 86321 022344444432 221 1357889999999999999999887553
No 189
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.69 E-value=1.1e-05 Score=67.35 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCc---------c----------CCCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIP---------R----------KGGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~---------~----------~~~~~~~~adiivlNK~D 130 (186)
+..+-+.+|.|-. . ..+..++.++.+|+|+|.++.+... . .....-..+.++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4556777888821 0 0112345689999999998854310 0 000112358899999999
Q ss_pred CCCcc---------------cccHHHHHHHHH----hhC-----CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 131 LASAI---------------GADLAVMERDAL----RMR-----DGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 131 l~~~~---------------~~~~~~~~~~l~----~~~-----p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
|.++. ....++..+.++ .++ ....+++|||++|.|++++|+++.+...
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 85321 012344444444 222 2457899999999999999999887654
No 190
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.62 E-value=8.9e-05 Score=55.08 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=64.5
Q ss_pred cCCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCC-C--ccCCCC-----CCCceeEEEEecCCCCCcccccHH
Q 029893 72 FKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDK-I--PRKGGP-----GITQADLLVINKTDLASAIGADLA 140 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~-~--~~~~~~-----~~~~adiivlNK~Dl~~~~~~~~~ 140 (186)
....+.+.+|+|..- ..+..+..++++++|+|.+++.. . ...+.. .-..+.++|.||+|+.+. ....
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 131 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE--KQRK 131 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--HHHH
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc--hhhH
Confidence 356788899999310 01122334788899999877531 1 111100 013577888899999865 2322
Q ss_pred H----HHHHHHhhCCCCC----EEEEeccCCC-CHHHHHHHHHHHHHHhhc
Q 029893 141 V----MERDALRMRDGGP----FIFAQVKHGL-GVEEIVNHILQAWEASTG 182 (186)
Q Consensus 141 ~----~~~~l~~~~p~a~----i~~~Sa~~g~-gi~~l~~~i~~~~~~~~~ 182 (186)
. ....+.+.. ..+ ++++||++|. |+++|++.+.+.++..+.
T Consensus 132 ~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 132 ACMSKITKELLNKR-GFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp HHHHHHHHHTTTCT-TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhc-CCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 1 112222112 233 8999999997 999999999988876553
No 191
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.62 E-value=5.1e-06 Score=74.34 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=68.7
Q ss_pred cCCcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCcccccHHH
Q 029893 72 FKADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.-+=||+|+| .. .| ..+.+|.+|+|+|+.+|-+.+.. .......+-++++||+|..... ...
T Consensus 65 ~~~~iNlIDTPG-H~--DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~---~~~ 138 (638)
T 3j25_A 65 ENTKVNIIDTPG-HM--DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID---LST 138 (638)
T ss_dssp SSCBCCCEECCC-SS--STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC---SHH
T ss_pred CCEEEEEEECCC-cH--HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC---HHH
Confidence 466677899999 22 12 12346999999999998765421 1122345779999999986541 111
Q ss_pred HHHHHHh---------------------------------------------------------------hCCCCCEEEE
Q 029893 142 MERDALR---------------------------------------------------------------MRDGGPFIFA 158 (186)
Q Consensus 142 ~~~~l~~---------------------------------------------------------------~~p~a~i~~~ 158 (186)
..+.+++ .....|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 1111111 0123589999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhh
Q 029893 159 QVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 159 Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
||+++.|++.|++.+..++|..+
T Consensus 219 Sa~~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 219 SAKSNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp CSTTCCSHHHHHHHHHHSCCCSG
T ss_pred ccccCCCchhHhhhhhccccCcc
Confidence 99999999999999988776543
No 192
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.61 E-value=1.1e-05 Score=66.02 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=51.0
Q ss_pred cCceEEEEEeCCCCCCCcc---CCC---CCCCceeEEEEecCCCCCccccc----HHHHHHHHHhhCCCCCEEEEeccCC
Q 029893 94 LADYIIYIIDVSGGDKIPR---KGG---PGITQADLLVINKTDLASAIGAD----LAVMERDALRMRDGGPFIFAQVKHG 163 (186)
Q Consensus 94 ~ad~~v~VvDa~~~~~~~~---~~~---~~~~~adiivlNK~Dl~~~~~~~----~~~~~~~l~~~~p~a~i~~~Sa~~g 163 (186)
.+|.+++|+|+..++.... .+. .....+.++|+||+||.++ .+ .+.+.+..++. ..+++.+||++|
T Consensus 86 nvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~--g~~v~~~sa~~~ 161 (307)
T 1t9h_A 86 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED--QDTEDTIQAYAEDYRNI--GYDVYLTSSKDQ 161 (307)
T ss_dssp CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC--HHHHHHHHHHHHHHHHH--TCCEEECCHHHH
T ss_pred hCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch--hhhHHHHHHHHHHHHhC--CCeEEEEecCCC
Confidence 4699999999987653321 111 1234578999999999976 33 34444444443 358999999999
Q ss_pred CCHHHHHHH
Q 029893 164 LGVEEIVNH 172 (186)
Q Consensus 164 ~gi~~l~~~ 172 (186)
.|+++|++.
T Consensus 162 ~g~~~L~~~ 170 (307)
T 1t9h_A 162 DSLADIIPH 170 (307)
T ss_dssp TTCTTTGGG
T ss_pred CCHHHHHhh
Confidence 998887654
No 193
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.51 E-value=6.9e-05 Score=58.30 Aligned_cols=105 Identities=8% Similarity=0.064 Sum_probs=61.9
Q ss_pred cCCcEEEEecCCCeeEE--------ee------eeecCceEEEEEeCCCCCCCccCCC--------CCCCceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLAA--------NF------SRELADYIIYIIDVSGGDKIPRKGG--------PGITQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~--------~~------~~~~ad~~v~VvDa~~~~~~~~~~~--------~~~~~adiivlNK~ 129 (186)
.+..+.|++|+|..-.. .+ ....+|++++|+|+.+......... .....+.++|+||+
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 35678999999942100 00 1124599999999876433211110 11224789999999
Q ss_pred CCCCcccccHH--------HHHHHHHhhCCCCCEEEEeccCC-----CCHHHHHHHHHHHHHHh
Q 029893 130 DLASAIGADLA--------VMERDALRMRDGGPFIFAQVKHG-----LGVEEIVNHILQAWEAS 180 (186)
Q Consensus 130 Dl~~~~~~~~~--------~~~~~l~~~~p~a~i~~~Sa~~g-----~gi~~l~~~i~~~~~~~ 180 (186)
|+.+. ..++ .+.+.+++.. .+++.++...+ .|+.+|++.+.+.+...
T Consensus 156 D~~~~--~~~~~~i~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 156 DDLGD--TNLHDYLREAPEDIQDLMDIFG--DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp GGC--------------CHHHHHHHHHHS--SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCc--ccHHHHHHhchHHHHHHHHHcC--CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 99865 3332 3344444443 35677766643 79999999998887653
No 194
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.50 E-value=7.6e-05 Score=63.96 Aligned_cols=146 Identities=14% Similarity=0.204 Sum_probs=78.3
Q ss_pred HHHHHHHhcC-CcEEEEEcccC-CchhHHHH---HhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF-TKEDGEFL---MRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g-~~iD~~~i---~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D 75 (186)
.+|+.++... +|++++..|.. .+--.++- ...++ ++.....+. |..... +++..+ ...++|
T Consensus 118 ~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv----pv~~~~~~~--------dp~~i~~~al~~a-~~~~~D 184 (443)
T 3dm5_A 118 AKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI----EVFGNPQEK--------DAIKLAKEGVDYF-KSKGVD 184 (443)
T ss_dssp HHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC----EEECCTTCC--------CHHHHHHHHHHHH-HHTTCS
T ss_pred HHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC----cEEecCCCC--------CHHHHHHHHHHHH-HhCCCC
Confidence 3566777764 99999999987 43222221 11222 233322221 111111 333333 245799
Q ss_pred EEEEecCCCeeEE-ee--------eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHHHHH
Q 029893 76 LLLCESGGDNLAA-NF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVME 143 (186)
Q Consensus 76 ~iiIEtsG~~l~~-~~--------~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~ 143 (186)
+|||||+|..-.. .. .....|.+++|+|+..+.+... .+.+. .....+|+||+|.... . ..+.
T Consensus 185 vVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~-~~i~gVIlTKlD~~~~--g--G~~l 259 (443)
T 3dm5_A 185 IIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEA-TPIGSIIVTKLDGSAK--G--GGAL 259 (443)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHS-CTTEEEEEECCSSCSS--H--HHHH
T ss_pred EEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhh-CCCeEEEEECCCCccc--c--cHHH
Confidence 9999999931100 00 0112478999999987643211 11111 1246799999998755 1 1222
Q ss_pred HHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 144 RDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 144 ~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
..... ...||.+++. |+++++|
T Consensus 260 s~~~~--~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 260 SAVAA--TGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHT--TCCCEEEEEC--SSSTTCE
T ss_pred HHHHH--HCCCEEEEEc--CCChHHh
Confidence 22222 3568988884 8887654
No 195
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.49 E-value=6.3e-05 Score=62.67 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=60.9
Q ss_pred CCcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCccC-------------------CCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIPRK-------------------GGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~~~-------------------~~~~~~~adiivlNK~D 130 (186)
...+-+.+|.|-. . ..+..++.++.+|+|+|.++.++.... ....-..+.++|+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 3556777888821 0 011234567899999999844322100 00012357899999999
Q ss_pred CCCccc---------------------ccHHHHHHHHHh----h---C--C-----CCCEEEEeccCCCCHHHHHHHHHH
Q 029893 131 LASAIG---------------------ADLAVMERDALR----M---R--D-----GGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 131 l~~~~~---------------------~~~~~~~~~l~~----~---~--p-----~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
|.++.. ...++..+.+++ + + | ...+++|||++++|++++|+++.+
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 843210 012333333332 1 1 1 124689999999999999998876
Q ss_pred HHH
Q 029893 176 AWE 178 (186)
Q Consensus 176 ~~~ 178 (186)
..-
T Consensus 342 ~I~ 344 (354)
T 2xtz_A 342 TLR 344 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 196
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.48 E-value=0.00015 Score=54.28 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=38.6
Q ss_pred HHHHHHHhcC-CcEEEEEcccC-Cch------hHHHHHhcCCCCcCceEeccCCCcccCCcc-cccccCcchhHhhhhhc
Q 029893 2 LALCKFLRDK-YSLAAVTNDIF-TKE------DGEFLMRNGALPEERIRAVETGGCPHAAIR-EDISINLGPLEELSNLF 72 (186)
Q Consensus 2 ~~~~~~l~~~-~~vaVi~nd~g-~~i------D~~~i~~~~~~~~~~~~~l~~Gccc~l~~r-~d~~~~~~~l~~l~~~~ 72 (186)
.++++.|+.+ .|+++|.+|++ ..+ |..++++.|. +.+...+.||||.. .+ .++. .+.+.++..+.
T Consensus 22 ~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~aGa---~~v~~~s~~~~~~~-~~~~~~~--~~~~~~ll~~~ 95 (169)
T 1xjc_A 22 EKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGA---VATAVEGDGLLQLH-LRRPLWR--LDDVLALYAPL 95 (169)
T ss_dssp HHHHHHHHHTTCCEEEEECCC--------------------C---SEEEEEETTEEEEE-ECCSCCC--HHHHHHHHGGG
T ss_pred HHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhcCC---CeEEeccCCEEEEE-ecccccc--hHHHHHHHHhc
Confidence 4677777654 89999999987 444 5667766554 23555556663322 11 0111 13344444333
Q ss_pred CCcEEEEecCC
Q 029893 73 KADLLLCESGG 83 (186)
Q Consensus 73 ~~D~iiIEtsG 83 (186)
++|++|||+.|
T Consensus 96 ~~D~vlVEg~~ 106 (169)
T 1xjc_A 96 RLDLVLVEGYK 106 (169)
T ss_dssp CCSEEEEECCT
T ss_pred CCCEEEEeCCC
Confidence 89999999999
No 197
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.46 E-value=0.0002 Score=60.86 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=67.8
Q ss_pred CcEEEEecCCCe--------eEEee--eeecCceEEEEEeCCCCCCCcc----------CCCC-CCCceeEEEEecCCCC
Q 029893 74 ADLLLCESGGDN--------LAANF--SRELADYIIYIIDVSGGDKIPR----------KGGP-GITQADLLVINKTDLA 132 (186)
Q Consensus 74 ~D~iiIEtsG~~--------l~~~~--~~~~ad~~v~VvDa~~~~~~~~----------~~~~-~~~~adiivlNK~Dl~ 132 (186)
..+.+.+++|.. +...+ ....++.++.++|++ ..... .+.. ....|.++|+||+|+.
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 568889999931 00011 112468899999997 21111 0111 1356899999999998
Q ss_pred CcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 029893 133 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~~ 181 (186)
+. ..++.+.+.++.. ..+++.+||++++|+++|++++.+.+....
T Consensus 283 ~~--~~~~~l~~~l~~~--g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 283 EE--EAVKALADALARE--GLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CH--HHHHHHHHHHHTT--TSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred hH--HHHHHHHHHHHhc--CCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 65 3444454444432 358999999999999999999999887544
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.35 E-value=0.00063 Score=50.99 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCeeE---EeeeeecCceEEEEEeCCCCCCCcc--CCC------CCCCceeEEEEecCCCCCcccccHHH
Q 029893 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~---~~~~~~~ad~~v~VvDa~~~~~~~~--~~~------~~~~~adiivlNK~Dl~~~~~~~~~~ 141 (186)
.+.+.+.+|+|.... ....+..++.+++|+|......... .+. .....+.++++||+|+.+......+.
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~ 132 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE 132 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHH
Confidence 355677899983110 1112235688999999876432110 010 11245789999999997542222333
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
.....+ .|..+++.+||+++.|++++++++.+.+..
T Consensus 133 a~~l~~--~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 133 ARAFAE--KNNLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHH--HTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 333333 256789999999999999999999887654
No 199
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.26 E-value=0.00024 Score=57.79 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=55.3
Q ss_pred ecCceEEEEEeCCCCCCCccCC---------CC--CC-CceeEEEEec-CCCCCcccccHHHHHHHH--HhhCCCCCEEE
Q 029893 93 ELADYIIYIIDVSGGDKIPRKG---------GP--GI-TQADLLVINK-TDLASAIGADLAVMERDA--LRMRDGGPFIF 157 (186)
Q Consensus 93 ~~ad~~v~VvDa~~~~~~~~~~---------~~--~~-~~adiivlNK-~Dl~~~~~~~~~~~~~~l--~~~~p~a~i~~ 157 (186)
...|.+|+|||+++.+....+. .+ .+ ..+-+|+.|| -|+... ....++.+.+ .++...-.|..
T Consensus 209 ~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~L~L~~l~r~W~Iq~ 286 (312)
T 3l2o_B 209 EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELHLNLLNHPWLVQD 286 (312)
T ss_dssp HHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHHTTGGGGCSCEEEEE
T ss_pred cCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHHcCCccCCCcEEEEe
Confidence 4579999999998765322100 01 12 3456667797 588765 3444555443 23333458999
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q 029893 158 AQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 158 ~Sa~~g~gi~~l~~~i~~~~ 177 (186)
+||+||+|+.+-++|+.+.+
T Consensus 287 csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 287 TEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp EETTTCTTHHHHHHHHHHHS
T ss_pred cccCCCcCHHHHHHHHHHHH
Confidence 99999999999999998765
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.22 E-value=0.00013 Score=65.99 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=38.7
Q ss_pred CcEEEEecCCCeeEEee------eeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCCCc
Q 029893 74 ADLLLCESGGDNLAANF------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~------~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~~~ 134 (186)
+-+=||+|.| .+ .| ..+.+|.+|+|||+.+|-..+.. .......+-++++||+|....
T Consensus 85 ~~iNlIDTPG-Hv--DF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 85 YRVNVIDTPG-HV--DFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EEEEEECCCS-CT--TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EEEEEEeCCC-Cc--ccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 3455899999 22 12 12346999999999998764321 112234578999999998643
No 201
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.20 E-value=8.7e-05 Score=58.42 Aligned_cols=107 Identities=9% Similarity=-0.017 Sum_probs=64.1
Q ss_pred cCCcEEEEecCCCee---E--Eee----------eeecCceEEEEEeCCCCCCCccC--------CCC-CCCceeEEEEe
Q 029893 72 FKADLLLCESGGDNL---A--ANF----------SRELADYIIYIIDVSGGDKIPRK--------GGP-GITQADLLVIN 127 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l---~--~~~----------~~~~ad~~v~VvDa~~~~~~~~~--------~~~-~~~~adiivlN 127 (186)
.+..+.|++|+|..- . ..+ ....+|++++|+|++........ +.. ....+.+++.|
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 467899999999410 0 000 11457999999999753211100 111 12568899999
Q ss_pred cCCCCCcccc-cH-----HHHHHHHHhhCCCCCEEEEeccC-----CCCHHHHHHHHHHHHHHh
Q 029893 128 KTDLASAIGA-DL-----AVMERDALRMRDGGPFIFAQVKH-----GLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 128 K~Dl~~~~~~-~~-----~~~~~~l~~~~p~a~i~~~Sa~~-----g~gi~~l~~~i~~~~~~~ 180 (186)
|+|+.+.... .+ +.+...+++.. .+++.++... +.|+++|++.+.+.+++.
T Consensus 148 K~Dl~~~~~~~~l~~~~~~~l~~l~~~~g--~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 148 KEDLAGGSLHDYVSNTENRALRELVAECG--GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp GGGGTTCCHHHHHHHCCCHHHHHHHHHTT--TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhcCCCCHHHHHhhcccHHHHHHHHHcC--CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 9999764100 11 12333334332 3566565544 689999999999988863
No 202
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.07 E-value=0.0012 Score=49.27 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=62.3
Q ss_pred CcEEEEecCCCee-E--EeeeeecCceEEEEEeCCCCCCCc--cCCC------CCCCceeEEEEecCCCCCcccccHHHH
Q 029893 74 ADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIP--RKGG------PGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 74 ~D~iiIEtsG~~l-~--~~~~~~~ad~~v~VvDa~~~~~~~--~~~~------~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
+...+.+|.|..- . .+..+..++.+++|+|........ ..+. .....+.++++||+|+.+......+..
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a 157 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA 157 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH
Confidence 4455678888311 0 011123467889999987642210 0010 112457899999999975421223333
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 177 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~ 177 (186)
....+ .|...++.+||+++.|++++++++.+.+
T Consensus 158 ~~l~~--~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 158 RAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHH--HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHH--HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 33333 3567899999999999999999987653
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.06 E-value=0.00023 Score=58.96 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCeeEE----e------------eeeecCceEEEEEeCCCCCCCcc------CCCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNLAA----N------------FSRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~----~------------~~~~~ad~~v~VvDa~~~~~~~~------~~~~~~~~adiivlNK~D 130 (186)
.+++.|++|+|+.-.. + ..+..+|.+++++|+...+.... ........+.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5689999999942100 0 01235788888898765332111 111223457899999999
Q ss_pred CCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHH
Q 029893 131 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 172 (186)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~ 172 (186)
++++.....+.+... ......+++.+|+.++.++++.+..
T Consensus 215 l~~~~~~~~~~~~~~--~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 215 LMDKGTDAVEILEGR--SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GCCTTCCSHHHHTTS--SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCCcccHHHHHcCc--cccccCCeEEEEECChHHhccCCCH
Confidence 987532222211111 1223458899999999988876544
No 204
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.05 E-value=0.00031 Score=59.48 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=60.3
Q ss_pred CcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCcc-------------------CCCCCCCceeEEEEecCCC
Q 029893 74 ADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR-------------------KGGPGITQADLLVINKTDL 131 (186)
Q Consensus 74 ~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~-------------------~~~~~~~~adiivlNK~Dl 131 (186)
..+-|.+|.|-.- ..+..++.++.+|+|+|.++.+.... .....-..+.++|+||+||
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 4455667777210 01123456899999999988432110 0011123478999999998
Q ss_pred CCccc----------------------------c--cHHHHHHHH----HhhC-------CCCCEEEEeccCCCCHHHHH
Q 029893 132 ASAIG----------------------------A--DLAVMERDA----LRMR-------DGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 132 ~~~~~----------------------------~--~~~~~~~~l----~~~~-------p~a~i~~~Sa~~g~gi~~l~ 170 (186)
.++.. . ..++....+ .+.+ ....+++|||++++|++++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 43210 0 122333332 1221 12356789999999999999
Q ss_pred HHHHHHHH
Q 029893 171 NHILQAWE 178 (186)
Q Consensus 171 ~~i~~~~~ 178 (186)
.++.+.+.
T Consensus 377 ~~v~~~I~ 384 (402)
T 1azs_C 377 NDCRDIIQ 384 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 205
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.01 E-value=0.00042 Score=57.09 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=62.0
Q ss_pred CcEEEEecCCCe-e--EEeeeeecCceEEEEEeCCCCCCCccC-------------------CCCCCCceeEEEEecCCC
Q 029893 74 ADLLLCESGGDN-L--AANFSRELADYIIYIIDVSGGDKIPRK-------------------GGPGITQADLLVINKTDL 131 (186)
Q Consensus 74 ~D~iiIEtsG~~-l--~~~~~~~~ad~~v~VvDa~~~~~~~~~-------------------~~~~~~~adiivlNK~Dl 131 (186)
..+-+.+|.|-. . ..+..++.++.+++|+|.++.+..... .+..-..+.++++||+||
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 445566666610 0 011234568999999988743321100 001123578999999998
Q ss_pred CCcc----------------cccHHHHHHHHH----hhCC----CCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 132 ASAI----------------GADLAVMERDAL----RMRD----GGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 132 ~~~~----------------~~~~~~~~~~l~----~~~p----~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.++. ....++..+.++ +.++ ....++|||+++.|++.+|..+.+..-
T Consensus 247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 6431 123444444443 2221 236788999999999999999887654
No 206
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.00 E-value=0.0011 Score=55.29 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=36.7
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhh-CCCCCEEEEeccCCCCHHHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHI 173 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~-~p~a~i~~~Sa~~g~gi~~l~~~i 173 (186)
..+.+||+||+||+++ ...+.+.+++... ....+++++||++|.|+++|...+
T Consensus 160 ~~~~iivlNK~DL~~~--~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDD--EGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TCEEEEEEECGGGCCH--HHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECccCCCc--hhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 3567999999999976 3322233333221 234589999999999999987653
No 207
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.94 E-value=0.00049 Score=56.98 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=62.7
Q ss_pred CCcEEEEecCCCee---EEeeeeecCceEEEEEeCCCCCCCccC-------------------CCCCCCceeEEEEecCC
Q 029893 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPRK-------------------GGPGITQADLLVINKTD 130 (186)
Q Consensus 73 ~~D~iiIEtsG~~l---~~~~~~~~ad~~v~VvDa~~~~~~~~~-------------------~~~~~~~adiivlNK~D 130 (186)
+..+-+.+|.|-.- .....++.++.+|+|+|.++.++.... ....-..+.++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 45566667777100 011134568999999999854332100 00012357899999999
Q ss_pred CCCcc---------------cccHHHHHHHHHhhC-------------------------CCCCEEEEeccCCCCHHHHH
Q 029893 131 LASAI---------------GADLAVMERDALRMR-------------------------DGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 131 l~~~~---------------~~~~~~~~~~l~~~~-------------------------p~a~i~~~Sa~~g~gi~~l~ 170 (186)
|..+. ....++..++++..+ .....++|||+++.+++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 86421 012344444443332 12467899999999999999
Q ss_pred HHHHHHH
Q 029893 171 NHILQAW 177 (186)
Q Consensus 171 ~~i~~~~ 177 (186)
+.+.+..
T Consensus 320 ~~v~~~I 326 (340)
T 4fid_A 320 MLAVDVI 326 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887644
No 208
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.90 E-value=3.4e-05 Score=58.76 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=44.6
Q ss_pred cCCcEEEEecCCCeeE----Eeeee---ecCceEEEEEeCC-CCCCCcc--CCC----------CCCCceeEEEEecCCC
Q 029893 72 FKADLLLCESGGDNLA----ANFSR---ELADYIIYIIDVS-GGDKIPR--KGG----------PGITQADLLVINKTDL 131 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~~~~~---~~ad~~v~VvDa~-~~~~~~~--~~~----------~~~~~adiivlNK~Dl 131 (186)
....+.+++|+|...- ..+.. ..+|.+++|+|++ ....... .+. ..-..+.++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 4578999999994210 01110 1268899999998 3322110 000 0124578999999999
Q ss_pred CCcccccHHHH----HHHHHhh--CCCCCEEEEeccCCCC
Q 029893 132 ASAIGADLAVM----ERDALRM--RDGGPFIFAQVKHGLG 165 (186)
Q Consensus 132 ~~~~~~~~~~~----~~~l~~~--~p~a~i~~~Sa~~g~g 165 (186)
.+. .....+ .+.++.+ ....+++++||++|.+
T Consensus 133 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTA--RPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccc--CCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 876 333222 1112111 0124667777776654
No 209
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.46 E-value=0.0015 Score=53.85 Aligned_cols=100 Identities=15% Similarity=0.037 Sum_probs=61.0
Q ss_pred CCcEEEEecCCCe-eEEe-----eeeecCceEEEEEeCCCCCC-CccCC---CC-----CCCceeEEEEecCCCCCcccc
Q 029893 73 KADLLLCESGGDN-LAAN-----FSRELADYIIYIIDVSGGDK-IPRKG---GP-----GITQADLLVINKTDLASAIGA 137 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~~-----~~~~~ad~~v~VvDa~~~~~-~~~~~---~~-----~~~~adiivlNK~Dl~~~~~~ 137 (186)
...+-|-+|+|-. ...+ ..++.++.+++|+|.++... ....+ .. .-..+.++++||+||.++ .
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~--~ 122 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE--D 122 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS--H
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch--h
Confidence 4788999999921 1111 12456899999999987511 00000 00 113478999999999875 2
Q ss_pred cH----HHHHHHH-HhhC------CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 138 DL----AVMERDA-LRMR------DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 138 ~~----~~~~~~l-~~~~------p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
.. ..+.... +++. -..+.++|||++ .++.+.|..+.+
T Consensus 123 ~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 123 FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHH
Confidence 21 1222221 2221 246899999998 589999887754
No 210
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.40 E-value=0.0018 Score=53.82 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=28.5
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhC--CCCCEEEEeccCCCCHHHHHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVKHGLGVEEIVNHILQ 175 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~--p~a~i~~~Sa~~g~gi~~l~~~i~~ 175 (186)
..+.++|+||+|+.+. .++..+...+++.. ...+++++||++|.| ++.+..+.+
T Consensus 174 ~~piIlV~NK~Dl~~~--~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 174 KVNIVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp -SCEEEEEECCSSSCH--HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred CCCEEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 3578999999999876 45544434443322 246899999999998 555554443
No 211
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.33 E-value=0.0013 Score=53.24 Aligned_cols=54 Identities=9% Similarity=-0.033 Sum_probs=31.7
Q ss_pred ceeEEEEecCCCCCcccccHH----HHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 120 QADLLVINKTDLASAIGADLA----VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 120 ~adiivlNK~Dl~~~~~~~~~----~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.+.++|+||.|+.+. .++. +..+.++.. ..+++++||++| |+++++.++.+.+.
T Consensus 156 ~~iilV~~K~Dl~~~--~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 156 VNIVPVIAKADTLTL--KERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp SCEEEEECCGGGSCH--HHHHHHHHHHHHHHHHT--TCCCCCCC----------CHHHHHHHH
T ss_pred CCEEEEEEeCCCCCH--HHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHHHHHHhh
Confidence 468999999999875 3332 334444444 368999999999 99999998887664
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.96 E-value=0.0066 Score=51.79 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=74.0
Q ss_pred HHHHHHhc-CCcEEEEEcccC-C-chhHHH-HHh-cCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCcE
Q 029893 3 ALCKFLRD-KYSLAAVTNDIF-T-KEDGEF-LMR-NGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (186)
Q Consensus 3 ~~~~~l~~-~~~vaVi~nd~g-~-~iD~~~-i~~-~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D~ 76 (186)
+++..+.. ++|++++.-|.. . .++... ... .++ ++....++... .... +++..+ ...++|+
T Consensus 116 kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv----~~~~~~~~~dp--------~~i~~~al~~a-~~~~~Dv 182 (433)
T 3kl4_A 116 KLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGV----QVYGEPNNQNP--------IEIAKKGVDIF-VKNKMDI 182 (433)
T ss_dssp HHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTC----CEECCTTCSCH--------HHHHHHHHHHT-TTTTCSE
T ss_pred HHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCC----ceeeccccCCH--------HHHHHHHHHHH-HhcCCCE
Confidence 45566665 489999999977 3 232211 111 122 22322111111 1101 233333 2458999
Q ss_pred EEEecCCC-e--eEEee--------eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccHHHH
Q 029893 77 LLCESGGD-N--LAANF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 77 iiIEtsG~-~--l~~~~--------~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
|||+|+|. . ....+ .....+.+++|+|+..+.+... .+.+.+ ....+|+||+|.... ....
T Consensus 183 vIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-~~~gVIlTKlD~~a~----~G~a 257 (433)
T 3kl4_A 183 IIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-PIGSVIITKMDGTAK----GGGA 257 (433)
T ss_dssp EEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-SSEEEEEECGGGCSC----HHHH
T ss_pred EEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-CCcEEEEeccccccc----chHH
Confidence 99999992 1 10000 0001377899999987643211 111111 357899999998754 1222
Q ss_pred HHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 143 ERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
....... ..||.+++. |++++
T Consensus 258 ls~~~~~--g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 258 LSAVVAT--GATIKFIGT--GEKID 278 (433)
T ss_dssp HHHHHHH--TCEEEEEEC--CSSSS
T ss_pred HHHHHHH--CCCEEEEEC--CCChH
Confidence 2223322 468888884 88874
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.85 E-value=2.8e-05 Score=66.48 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=57.0
Q ss_pred cCCcEEEEecCCCeeE-Eee--------eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLA-ANF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~-~~~--------~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.++|+|||+|+|..-. ..+ ....+|.+++|+|+..+.+... .+...+.....+|+||+|.... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~--~g- 255 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAK--GG- 255 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCST--TH-
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccc--hH-
Confidence 6899999999994210 000 1113588999999977642111 1111110127899999998654 11
Q ss_pred HHHHHHHHhh----------------CCCCCEEEEeccCCCC-HHHHHHHHHHHH
Q 029893 140 AVMERDALRM----------------RDGGPFIFAQVKHGLG-VEEIVNHILQAW 177 (186)
Q Consensus 140 ~~~~~~l~~~----------------~p~a~i~~~Sa~~g~g-i~~l~~~i~~~~ 177 (186)
......... .++.|..++|+..|.| +..|++.+.+.+
T Consensus 256 -~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 256 -GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp -HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred -HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 122222211 1344555667888888 777766654443
No 214
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.82 E-value=0.0011 Score=60.98 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCcEEEEecCCCe-eEE--eeeeecCceEEEEEeCCCCCCCccC----CCCCCCceeEEEEecCCCC
Q 029893 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (186)
Q Consensus 73 ~~D~iiIEtsG~~-l~~--~~~~~~ad~~v~VvDa~~~~~~~~~----~~~~~~~adiivlNK~Dl~ 132 (186)
+..+-|++|+|.. ... ...+..+|.+|+|+|+.++...+.. .......+.++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 5678899999921 000 1123457999999999987543221 1112345789999999987
No 215
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.28 E-value=0.0029 Score=53.73 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=27.4
Q ss_pred CceeEEEEecCCCCCcccccHHHH----HHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVM----ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 179 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~----~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~ 179 (186)
..+.++|+||+|+.+. .++..+ .+.+... +.+++.+||+++.++++++..+...+|.
T Consensus 167 ~v~iIlVinK~Dll~~--~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 167 KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp TSEEEEEEESTTSSCH--HHHHHHHHHHHHHHHHH--TCCCCCCC-----------------CCE
T ss_pred cCcEEEEEEcccCccH--HHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 4578999999999876 444433 3334333 4688999999999999988887776554
No 216
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.82 E-value=0.004 Score=52.46 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=35.5
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN 171 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~ 171 (186)
..|.++|+||+|+... ..++.+.+..... .++++++||+.+.|+.++++
T Consensus 214 ~kP~i~v~NK~D~~~~--~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASD--EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCH--HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccch--HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHh
Confidence 3689999999998733 4455554444322 46899999999999987643
No 217
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.12 E-value=0.017 Score=45.60 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=37.1
Q ss_pred cCCcEEEEecCCCeeE----Eee--------eeecCceEEEEEeCCCCCCC--ccCC--------CCCCCceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLA----ANF--------SRELADYIIYIIDVSGGDKI--PRKG--------GPGITQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~~~--------~~~~ad~~v~VvDa~~~~~~--~~~~--------~~~~~~adiivlNK~ 129 (186)
.+..+.|++|+|..-. ..+ ....+|++++|+|+...... ...+ ...+..+.++|+||+
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 4678999999994210 000 01136899999887542111 0011 111225789999999
Q ss_pred CCCCc
Q 029893 130 DLASA 134 (186)
Q Consensus 130 Dl~~~ 134 (186)
|+.++
T Consensus 165 Dl~~~ 169 (270)
T 1h65_A 165 QFSPP 169 (270)
T ss_dssp SCCCG
T ss_pred ccCCc
Confidence 99865
No 218
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.016 Score=42.64 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=42.4
Q ss_pred cCCcEEEEecCCCeeEEee---eee----cCceEEEEEeCC-CCCCCcc--CCC----------CCCCceeEEEEecCCC
Q 029893 72 FKADLLLCESGGDNLAANF---SRE----LADYIIYIIDVS-GGDKIPR--KGG----------PGITQADLLVINKTDL 131 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~---~~~----~ad~~v~VvDa~-~~~~~~~--~~~----------~~~~~adiivlNK~Dl 131 (186)
.+..+.|++|+|..--... .+. .+|.+++|+|++ ....... .+. ..-..+.++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 4678889999993110010 111 268999999998 3221100 000 0124578999999999
Q ss_pred CCcccccHHHHHHHH
Q 029893 132 ASAIGADLAVMERDA 146 (186)
Q Consensus 132 ~~~~~~~~~~~~~~l 146 (186)
.++ .....+.+.+
T Consensus 169 ~~~--~~~~~~~~~l 181 (193)
T 2ged_A 169 FTA--RPPSKIKDAL 181 (193)
T ss_dssp TTC--CCHHHHHHHH
T ss_pred cCC--CCHHHHHHHH
Confidence 876 4555554444
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.80 E-value=0.019 Score=46.40 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=52.4
Q ss_pred hcCCcEEEEecCCCee--E-Eee--------eeecCceEEEEEeCCCCCCCccCCCCCC--Cce-eEEEEecCCCCCccc
Q 029893 71 LFKADLLLCESGGDNL--A-ANF--------SRELADYIIYIIDVSGGDKIPRKGGPGI--TQA-DLLVINKTDLASAIG 136 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l--~-~~~--------~~~~ad~~v~VvDa~~~~~~~~~~~~~~--~~a-diivlNK~Dl~~~~~ 136 (186)
..++|+|||+|+|..- . ... ....+|.+++|+|+..+...... ...+ ..+ ..+|+||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~-~~~~~~~~~i~gvVlnk~D~~~~-- 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL-ASKFNQASKIGTIIITKMDGTAK-- 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH-HHHHHHTCTTEEEEEECGGGCTT--
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHH-HHHHHhhCCCCEEEEeCCCCCcc--
Confidence 3689999999999321 1 011 11235888999998765321110 0111 123 6789999997643
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
...+....... ..|+.+++ +|++++++.
T Consensus 255 --~g~~~~~~~~~--~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 255 --GGGALSAVAAT--GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp --HHHHHHHHHTT--TCCEEEEE--CSSSTTCEE
T ss_pred --hHHHHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 22223322322 46888877 688886653
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.79 E-value=0.15 Score=43.07 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=60.2
Q ss_pred CcEEEEecCCCeeEE-e-------eeeecCceEEEEEeCCCCCCCccC---CCCCCCceeEEEEecCCCC--Cc-----c
Q 029893 74 ADLLLCESGGDNLAA-N-------FSRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLA--SA-----I 135 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~-~-------~~~~~ad~~v~VvDa~~~~~~~~~---~~~~~~~adiivlNK~Dl~--~~-----~ 135 (186)
+...+.|+.|..... . +.....+..+. ++..++...... .......+.++|+||.|+. ++ .
T Consensus 120 ~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD 198 (413)
T 1tq4_A 120 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQ 198 (413)
T ss_dssp TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCT
T ss_pred CCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCC
Confidence 478899999942110 0 01111244444 776543221111 1112346889999999975 10 0
Q ss_pred cccHHHHHHHHHhh---------CCCCCEEEEec--cCCCCHHHHHHHHHHHHHHhh
Q 029893 136 GADLAVMERDALRM---------RDGGPFIFAQV--KHGLGVEEIVNHILQAWEAST 181 (186)
Q Consensus 136 ~~~~~~~~~~l~~~---------~p~a~i~~~Sa--~~g~gi~~l~~~i~~~~~~~~ 181 (186)
.....++.+.+++. .+...++.+|+ .++.|++++.+.+.+.+|+.+
T Consensus 199 ~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 199 TFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 02233333333332 24568899999 566679999999998887654
No 221
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.83 E-value=0.41 Score=35.37 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=16.0
Q ss_pred HHHHHHHhc-CCcEEEEEcccC-Cchh
Q 029893 2 LALCKFLRD-KYSLAAVTNDIF-TKED 26 (186)
Q Consensus 2 ~~~~~~l~~-~~~vaVi~nd~g-~~iD 26 (186)
.++++.+.. +.++++|.++++ ..+|
T Consensus 24 ~~l~~~l~~~g~~v~~i~~~~~~~~id 50 (174)
T 1np6_A 24 KKLIPALCARGIRPGLIKHTHHDMDVD 50 (174)
T ss_dssp HHHHHHHHHTTCCEEEEEECCC-----
T ss_pred HHHHHhccccCCceeEEeeCCCccccC
Confidence 456666654 489999999987 6665
No 222
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.83 E-value=0.39 Score=37.43 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=35.8
Q ss_pred cCCcEEEEecCCCeeE---E-ee--------eeecCceEEEEEeCCCCCCC--ccC--------CCCCCCceeEEEEecC
Q 029893 72 FKADLLLCESGGDNLA---A-NF--------SRELADYIIYIIDVSGGDKI--PRK--------GGPGITQADLLVINKT 129 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~---~-~~--------~~~~ad~~v~VvDa~~~~~~--~~~--------~~~~~~~adiivlNK~ 129 (186)
.+..+.|++|+|..-- . .+ ....+|++++|+|....... ... .......+.++|+||+
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 4568999999994100 0 00 00135889999877543211 001 1112223679999999
Q ss_pred CCCCc
Q 029893 130 DLASA 134 (186)
Q Consensus 130 Dl~~~ 134 (186)
|+.++
T Consensus 162 Dl~~~ 166 (262)
T 3def_A 162 QFSPP 166 (262)
T ss_dssp TCCCS
T ss_pred ccCCC
Confidence 99744
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.76 E-value=0.25 Score=41.91 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=58.6
Q ss_pred HHHHHHhc--CCcEEEEEcccC-C-chhHHH--HHhcCCCCcCceEeccCCCcccCCcccccccCc-chhHhhhhhcCCc
Q 029893 3 ALCKFLRD--KYSLAAVTNDIF-T-KEDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (186)
Q Consensus 3 ~~~~~l~~--~~~vaVi~nd~g-~-~iD~~~--i~~~~~~~~~~~~~l~~Gccc~l~~r~d~~~~~-~~l~~l~~~~~~D 75 (186)
+|+..+.. ++|+.+|--|+. . .++... -...++ ++.....+. |-...+ +++..+ ...++|
T Consensus 119 ~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l----~v~~~~~~~--------dp~~i~~~~l~~~-~~~~~D 185 (433)
T 2xxa_A 119 KLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV----DFFPSDVGQ--------KPVDIVNAALKEA-KLKFYD 185 (433)
T ss_dssp HHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC----EECCCCSSS--------CHHHHHHHHHHHH-HHTTCS
T ss_pred HHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe----eEEeCCCCC--------CHHHHHHHHHHHH-HhCCCC
Confidence 45555554 689999999987 3 333211 112232 233221111 111111 233333 235899
Q ss_pred EEEEecCCCe-eEEee--------eeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCc
Q 029893 76 LLLCESGGDN-LAANF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASA 134 (186)
Q Consensus 76 ~iiIEtsG~~-l~~~~--------~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~ 134 (186)
+|||+|+|.. ..... .....+.+++|+|+..+.+... .+...+. -.-+|+||+|....
T Consensus 186 ~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~-i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP-LTGVVLTKVDGDAR 255 (433)
T ss_dssp EEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSC-CCCEEEECTTSSSC
T ss_pred EEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCC-CeEEEEecCCCCcc
Confidence 9999999931 00000 0113467889999987633211 0111111 14579999997644
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.05 E-value=0.11 Score=42.26 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=49.4
Q ss_pred hcCCcEEEEecCCCeeEE--e-------------eeeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCC
Q 029893 71 LFKADLLLCESGGDNLAA--N-------------FSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLA 132 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~--~-------------~~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~ 132 (186)
..++|+|||+|+|..-.. . ..+...|.+++|+|+..+..... .+...+ .-.-+|+||.|-.
T Consensus 189 ~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~-~i~GvVltk~d~~ 267 (320)
T 1zu4_A 189 EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVA-DVSGIILTKMDST 267 (320)
T ss_dssp HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTS-CCCEEEEECGGGC
T ss_pred hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcC-CCcEEEEeCCCCC
Confidence 468999999999931100 0 00112577899999885421111 111111 1245899999975
Q ss_pred CcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHH
Q 029893 133 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 169 (186)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l 169 (186)
.. . ..+....... ..|+.+++ +|++++++
T Consensus 268 ~~--~--g~~~~~~~~~--~~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 268 SK--G--GIGLAIKELL--NIPIKMIG--VGEKVDDL 296 (320)
T ss_dssp SC--T--THHHHHHHHH--CCCEEEEE--CSSSTTCE
T ss_pred Cc--h--hHHHHHHHHH--CcCEEEEe--CCCCcccc
Confidence 43 1 1233333333 35787776 57777554
No 225
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.71 E-value=1.1 Score=37.47 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=44.1
Q ss_pred CceeEEEEecCCC--C-CcccccHHHHHHHHHhhCCCCCEEEEeccC---------------------CCCHHHHHHHHH
Q 029893 119 TQADLLVINKTDL--A-SAIGADLAVMERDALRMRDGGPFIFAQVKH---------------------GLGVEEIVNHIL 174 (186)
Q Consensus 119 ~~adiivlNK~Dl--~-~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~---------------------g~gi~~l~~~i~ 174 (186)
.++.++++||.|- . +. ...++.+.+++++.+|.++++++||+. +.|++.+++...
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~-~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~ 302 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQK-NKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGY 302 (392)
T ss_dssp GSCEEEEEECCHHHHTTTC-CSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred cCceEEEEEecchhhcccc-hHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 4689999999983 2 21 145777777777777889999999986 688888888776
Q ss_pred HHH
Q 029893 175 QAW 177 (186)
Q Consensus 175 ~~~ 177 (186)
+.+
T Consensus 303 ~~L 305 (392)
T 1ni3_A 303 NAL 305 (392)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 226
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=86.37 E-value=0.84 Score=37.82 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=31.5
Q ss_pred ceeEEEEecCC--CCCc-ccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHH
Q 029893 120 QADLLVINKTD--LASA-IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 170 (186)
Q Consensus 120 ~adiivlNK~D--l~~~-~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~ 170 (186)
+|.+++.||.| +.+. ....++.+.+..+.. +++++++||+++.++.++.
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAELS 253 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTSC
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHhc
Confidence 68999999997 4331 013445555555444 3799999999855555443
No 227
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=83.81 E-value=1.8 Score=35.93 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=36.6
Q ss_pred eeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 121 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 121 adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
+.+++.||+|..+. ++++.+ ......+++|+.++.|++.|++.+.+.+.
T Consensus 251 p~i~v~nKid~~~~--eele~l-------~~~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 251 PAIYVLNKIDSLSI--EELELL-------YRIPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp CEEEEEECGGGSCH--HHHHHH-------TTSTTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEEecccccCH--HHHHHH-------hcccchhhhhhhhcccchhHHHHHHHHcC
Confidence 67899999998765 333222 22346789999999999999998877653
No 228
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.58 E-value=0.59 Score=39.63 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCCCcc----CCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHh-h-CCCCCEEEEec
Q 029893 98 IIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALR-M-RDGGPFIFAQV 160 (186)
Q Consensus 98 ~v~VvDa~~~~~~~~----~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~-~-~p~a~i~~~Sa 160 (186)
+.+++|+.++..... +... ...+.++|+||+|.+++ .++..+...+++ + ..+.+|+.+|.
T Consensus 152 v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~--~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 152 LYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK--SELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH--HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch--HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 566777766543211 1111 34578999999999987 677777777765 3 24567777774
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=79.30 E-value=0.29 Score=40.51 Aligned_cols=91 Identities=5% Similarity=-0.098 Sum_probs=51.6
Q ss_pred CcEEEEecCCCeeEEee------------ee-ecCceEEEEEeCCCC----CCCccCCCCCCCceeEEEEecCCCCCccc
Q 029893 74 ADLLLCESGGDNLAANF------------SR-ELADYIIYIIDVSGG----DKIPRKGGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 74 ~D~iiIEtsG~~l~~~~------------~~-~~ad~~v~VvDa~~~----~~~~~~~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
..+.+++|+|+.-.... .+ ...+.+++++++.+. .-....+......+.++++||.|.+..
T Consensus 212 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~-- 289 (369)
T 3ec1_A 212 SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR-- 289 (369)
T ss_dssp TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE--
T ss_pred CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc--
Confidence 35899999995211100 00 124678899988432 111111222235678999999999876
Q ss_pred ccHHHHHHHHHhhCCCCCEEEEeccCCCCHH
Q 029893 137 ADLAVMERDALRMRDGGPFIFAQVKHGLGVE 167 (186)
Q Consensus 137 ~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~ 167 (186)
..++...+.+++... .++.+.++.+..++.
T Consensus 290 ~~~~~~~~~~~~~~g-~~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 290 TKLEKADSLYANQLG-ELLSPPSKRYAAEFP 319 (369)
T ss_dssp EEGGGHHHHHHHHBT-TTBCSSCGGGTTTCC
T ss_pred ccHHHHHHHHHHhcC-CccCCCCchhhhhcc
Confidence 455555555555442 355666666555554
No 230
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=73.64 E-value=0.58 Score=39.27 Aligned_cols=100 Identities=15% Similarity=-0.009 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCee-EE-------ee--eeecCceEEEEEeCCCCCCCccCCCCCCCceeEEEEecCCCCCcccccHHHH
Q 029893 73 KADLLLCESGGDNL-AA-------NF--SRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM 142 (186)
Q Consensus 73 ~~D~iiIEtsG~~l-~~-------~~--~~~~ad~~v~VvDa~~~~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~ 142 (186)
+..+.|++|+|+.- +. .+ .++.+|.+++|+|+.+.+.... ......| +|++|.+.. +-....
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~--v~~~~dP----~~di~~i~~--El~l~d 156 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH--VEGSVDP----IRDIEIIHE--ELQLKD 156 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--------------CTT----HHHHHHHHH--HHHHHH
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh--hcCCCCh----HHHHHHhhh--hhhhhh
Confidence 34689999999421 00 11 2345799999999976433211 1100011 455554432 111111
Q ss_pred HHHHHhhCCCCCEEEEe--ccCCCCHHHHHHHHHHHHHHh
Q 029893 143 ERDALRMRDGGPFIFAQ--VKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 143 ~~~l~~~~p~a~i~~~S--a~~g~gi~~l~~~i~~~~~~~ 180 (186)
.+.+....+.......| ++.+.+..++++.+.+++++.
T Consensus 157 ~~~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~ 196 (396)
T 2ohf_A 157 EEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQ 196 (396)
T ss_dssp HHHHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhc
Confidence 11222211222223334 577889999999998888766
No 231
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=68.18 E-value=9 Score=31.58 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=36.4
Q ss_pred CceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccC----------------------CCCHHHHHHHHHHH
Q 029893 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH----------------------GLGVEEIVNHILQA 176 (186)
Q Consensus 119 ~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~----------------------g~gi~~l~~~i~~~ 176 (186)
.+|.+++.||.|.--......+.+.+...+. .++++++||+. +.|++.+++...+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~--~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~ 276 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKE--GAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYAL 276 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHT--TCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHc--CCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHH
Confidence 3789999999995421113344444444332 47899999764 36788887776554
Q ss_pred H
Q 029893 177 W 177 (186)
Q Consensus 177 ~ 177 (186)
+
T Consensus 277 L 277 (363)
T 1jal_A 277 L 277 (363)
T ss_dssp T
T ss_pred h
Confidence 4
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=64.64 E-value=2.7 Score=33.56 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=46.2
Q ss_pred cCCcEEEEecCCCeeEEe---------eeeecCceEEEEEeCCCCCCCcc---CCCCCCCceeEEEEecCCCCCcccccH
Q 029893 72 FKADLLLCESGGDNLAAN---------FSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADL 139 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---------~~~~~ad~~v~VvDa~~~~~~~~---~~~~~~~~adiivlNK~Dl~~~~~~~~ 139 (186)
.++|+|||+|+|..-... ......+-+++|+|++++..... .....+. ..-+|+||.|.... .
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~-~~giVltk~D~~~~--~-- 255 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVP-VNQYIFTKIDETTS--L-- 255 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSC-CCEEEEECTTTCSC--C--
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCC-CCEEEEeCCCcccc--h--
Confidence 579999999999311000 00011356788899887622111 1111222 35677899997654 1
Q ss_pred HHHHHHHHhhCCCCCEEEEeccCCCCH
Q 029893 140 AVMERDALRMRDGGPFIFAQVKHGLGV 166 (186)
Q Consensus 140 ~~~~~~l~~~~p~a~i~~~Sa~~g~gi 166 (186)
..+...+... ..|+.+++ +|+++
T Consensus 256 g~~~~~~~~~--~~pi~~i~--~ge~v 278 (296)
T 2px0_A 256 GSVFNILAES--KIGVGFMT--NGQNV 278 (296)
T ss_dssp HHHHHHHHTC--SCCCSEEC--CSSCT
T ss_pred hHHHHHHHHH--CcCEEEEE--CCCCC
Confidence 2333333333 35666655 56666
No 233
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=62.94 E-value=6 Score=33.06 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=29.7
Q ss_pred CCceeEEEEecCC--CCCcccccHHHHHHHHHhhCCCCCEEEEeccC
Q 029893 118 ITQADLLVINKTD--LASAIGADLAVMERDALRMRDGGPFIFAQVKH 162 (186)
Q Consensus 118 ~~~adiivlNK~D--l~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~ 162 (186)
..++.++++||.+ +.......+..+.+.+...+|.++++++||+.
T Consensus 221 t~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~ 267 (396)
T 2ohf_A 221 TSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGAL 267 (396)
T ss_dssp GGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHH
T ss_pred hCCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHH
Confidence 4578999999973 33211133455555555555788999999985
No 234
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=60.90 E-value=4.9 Score=31.43 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=22.6
Q ss_pred cCCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~ 106 (186)
..+|+||||+.+. +... .....+|.+++++.+..
T Consensus 102 ~~yD~viiD~p~~-~~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 102 AECDFILIDTPGG-DSAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HHCSEEEEECCSS-CCHHHHHHHHTCSEEEEEEESSH
T ss_pred hcCCEEEEcCCCC-ccHHHHHHHHHCCEEEEEEcCCc
Confidence 4799999999983 2111 11234799999887753
No 235
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=45.87 E-value=9.6 Score=28.95 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=40.3
Q ss_pred cCCcEEEEecCCCeeEEeeee--ecCc-------eEEEEEeCCCCCCCcc----C--CCCCCCceeEEEEecCCCCCccc
Q 029893 72 FKADLLLCESGGDNLAANFSR--ELAD-------YIIYIIDVSGGDKIPR----K--GGPGITQADLLVINKTDLASAIG 136 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~~~~--~~ad-------~~v~VvDa~~~~~~~~----~--~~~~~~~adiivlNK~Dl~~~~~ 136 (186)
.++|+++||++| .+..+... ..+| -+|+|+++..+.-... . ....+. -.=+|+||++--..
T Consensus 109 ~~~D~vlIEgag-gl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~-i~GvIlN~~~~~~~-- 184 (228)
T 3of5_A 109 QDLDILFIEGAG-GLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIK-LAGWIANCNDSNIK-- 184 (228)
T ss_dssp SSCSEEEEEEEE-ETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCC-EEEEEEEECCTTCS--
T ss_pred ccCCEEEEECCC-ccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCc-EEEEEEECcCCcch--
Confidence 589999999998 22222211 1122 2788898865421000 0 011111 13478999874322
Q ss_pred ccHHHHHHHHHhh--CCCCCEEE
Q 029893 137 ADLAVMERDALRM--RDGGPFIF 157 (186)
Q Consensus 137 ~~~~~~~~~l~~~--~p~a~i~~ 157 (186)
..+...+.+++. .|-.-+++
T Consensus 185 -~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 185 -YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp -CHHHHHHHHHHHHSCCCSEEEE
T ss_pred -hhHHHHHHHHHhhCCCEEEECC
Confidence 223344555543 24445566
No 236
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=42.71 E-value=2.1 Score=35.19 Aligned_cols=67 Identities=4% Similarity=-0.148 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCC----CCCccCCCCCCCceeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCC
Q 029893 96 DYIIYIIDVSGG----DKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 165 (186)
Q Consensus 96 d~~v~VvDa~~~----~~~~~~~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~g 165 (186)
+.+++++|+... .-....+....+.+.++++||.|.+.. ...+...+.+++... ..+.+.++.++.+
T Consensus 246 ~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~--~~~~~~~~~~~~~~g-~~l~p~~~~~~~~ 316 (368)
T 3h2y_A 246 KPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR--TKLEKADELYKNHAG-DLLSPPTPEELEN 316 (368)
T ss_dssp CCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE--EEHHHHHHHHHHHBT-TTBCSSCHHHHHT
T ss_pred CceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc--ccHHHHHHHHHHHhC-CccCCCchhhHhh
Confidence 567788887421 100111122245688999999999987 667766666665432 2444445443333
No 237
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=39.72 E-value=14 Score=29.78 Aligned_cols=50 Identities=6% Similarity=0.120 Sum_probs=37.0
Q ss_pred eeEEEEecCCCCCcccccHHHHHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q 029893 121 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE 178 (186)
Q Consensus 121 adiivlNK~Dl~~~~~~~~~~~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~ 178 (186)
.-.||++|-|..++ + +.+..++. ..|++.++..+.+++..+..++...+.
T Consensus 81 ~P~IIltrg~~~pe--e----lie~A~~~--~IPVL~T~~~ts~~~~~l~~~l~~~~~ 130 (314)
T 1ko7_A 81 TPAIIVTRDLEPPE--E----LIEAAKEH--ETPLITSKIATTQLMSRLTTFLEHELA 130 (314)
T ss_dssp CCCEEECTTCCCCH--H----HHHHHHHT--TCCEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCCCH--H----HHHHHHHC--CCeEEEECCchhHHHHHHHHHHHHhhc
Confidence 46789999998855 3 23333333 679999999999999999888876543
No 238
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=39.63 E-value=14 Score=27.48 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=32.9
Q ss_pred hcCCcEEEEecCCCeeEE-e-eeeecCceEEEEEeCCCCCCCc----cCCCCCCC-ceeEEEEecCC
Q 029893 71 LFKADLLLCESGGDNLAA-N-FSRELADYIIYIIDVSGGDKIP----RKGGPGIT-QADLLVINKTD 130 (186)
Q Consensus 71 ~~~~D~iiIEtsG~~l~~-~-~~~~~ad~~v~VvDa~~~~~~~----~~~~~~~~-~adiivlNK~D 130 (186)
+..+|+|||+|.+. +.. . .....+|.+++++.+....... ........ ....+|+||.+
T Consensus 129 ~~~yD~viiD~pp~-~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 129 LDKKEAVVMDMGAG-IEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp HTCCSEEEEEECTT-CTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred cCCCCEEEEeCCCc-ccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 45899999999882 111 1 1123469999999764321100 00111111 23578999998
No 239
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=38.76 E-value=38 Score=21.14 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCCCEEEEeccCCCCHHHHHHHHHHHHHHh
Q 029893 142 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 180 (186)
Q Consensus 142 ~~~~l~~~~p~a~i~~~Sa~~g~gi~~l~~~i~~~~~~~ 180 (186)
+.+.+.+.....--+.+||.+.+.-.++++.+.+.++..
T Consensus 38 lekalaragarnvqitisaendeqakelleliarllqkl 76 (96)
T 2jvf_A 38 LEKALARAGARNVQITISAENDEQAKELLELIARLLQKL 76 (96)
T ss_dssp HHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHh
Confidence 333343333334567889999999999999999888754
No 240
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=38.69 E-value=16 Score=28.45 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=31.0
Q ss_pred CceEEEEEeCC-CCCCCccC----CCCCCCceeEEEEecCCCCCcccccHHHHHHHHH
Q 029893 95 ADYIIYIIDVS-GGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDAL 147 (186)
Q Consensus 95 ad~~v~VvDa~-~~~~~~~~----~~~~~~~adiivlNK~Dl~~~~~~~~~~~~~~l~ 147 (186)
++..++++|.+ ++...... ..... .+.++|+||+|.+++ .++..+.+.++
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~--~e~~~~k~~i~ 166 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL--EEKSEFKQRVR 166 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH--HHHHHHHHHHH
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH--HHHHHHHHHHH
Confidence 46678888865 55432210 01112 688999999999987 56655555544
No 241
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=35.61 E-value=20 Score=26.24 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=10.9
Q ss_pred cCCcEEEEecCC
Q 029893 72 FKADLLLCESGG 83 (186)
Q Consensus 72 ~~~D~iiIEtsG 83 (186)
..+|+||||++|
T Consensus 107 ~~yD~viID~p~ 118 (224)
T 1byi_A 107 QQADWVLVEGAG 118 (224)
T ss_dssp TTCSEEEEECSS
T ss_pred HhCCEEEEEcCC
Confidence 479999999997
No 242
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=29.96 E-value=13 Score=28.18 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=22.1
Q ss_pred cCCcEEEEecCCCeeE----EeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLA----ANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~~~~~~~ad~~v~VvDa~~ 106 (186)
..+|+|||+|.|.... .++....+|.+++++.+..
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~ 152 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM 152 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch
Confidence 3699999999983110 0111124799999887643
No 243
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=29.86 E-value=22 Score=28.80 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCeeEE-e-eeeecCceEEEEEeCC
Q 029893 73 KADLLLCESGGDNLAA-N-FSRELADYIIYIIDVS 105 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~-~-~~~~~ad~~v~VvDa~ 105 (186)
.+|+|||+|... +.. . .....+|.+++++.+.
T Consensus 153 ~yD~VIID~pP~-l~~~~~~aL~~aD~viip~~~~ 186 (361)
T 3pg5_A 153 RYDVIFFDVGPS-LGPFNRTVLLGCDAFVTPTATD 186 (361)
T ss_dssp CCSEEEEECCSC-CSHHHHHHHTTCSEEEEEECCS
T ss_pred CCCEEEEECCCC-cCHHHHHHHHHCCEEEEEecCC
Confidence 899999999972 210 0 0112479999988764
No 244
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=29.52 E-value=33 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=22.4
Q ss_pred cCCcEEEEecCCCeeEEe---eeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLAAN---FSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~---~~~~~ad~~v~VvDa~~ 106 (186)
..+|+|||+|.+. +... .....+|.+++|+.+..
T Consensus 155 ~~yD~ViiD~p~~-~~~~~~~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 155 DDTDVVIFDVLGD-VVCGGFAAPLQHADQAVVVTANDF 191 (307)
T ss_dssp SSCSEEEEEECCS-SCCGGGGGGGGTCSEEEEEECSSH
T ss_pred ccCCEEEEeCCCc-cchHHHHHHHHHCCEEEEEecCcH
Confidence 4799999999772 2111 11234799999887643
No 245
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=25.39 E-value=19 Score=27.79 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=22.0
Q ss_pred cCCcEEEEecCCCeeE----EeeeeecCceEEEEEeCCC
Q 029893 72 FKADLLLCESGGDNLA----ANFSRELADYIIYIIDVSG 106 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~----~~~~~~~ad~~v~VvDa~~ 106 (186)
..+|+|||+|.|.... .+.....+|.+++++.+..
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~ 155 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEM 155 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCH
Confidence 4799999999983110 0111124788988887643
No 246
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=25.34 E-value=21 Score=28.01 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCCe-eEEee-eeecCceEEEEEeCCCCCCCcc----CCCCCCC-ceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDN-LAANF-SRELADYIIYIIDVSGGDKIPR----KGGPGIT-QADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~-l~~~~-~~~~ad~~v~VvDa~~~~~~~~----~~~~~~~-~adiivlNK~Dl~~ 133 (186)
..+|+|||+|++.. ..... ....+|.+++|+.+........ ....+.. .-.-+|+||+|.-.
T Consensus 200 ~~yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 200 KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHCSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred hCCCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 47999999999832 11111 1234789999998765421100 0001111 12467899998654
No 247
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=24.79 E-value=26 Score=26.61 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=32.1
Q ss_pred cCCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCCCCCC--------ccCCCCCCCceeEEEEecCC
Q 029893 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGGDKI--------PRKGGPGITQADLLVINKTD 130 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~~~~~--------~~~~~~~~~~adiivlNK~D 130 (186)
..+|+|||++.+. +... .....+|.+++++.+...... ...... .....+|+|+.+
T Consensus 143 ~~yD~viiD~pp~-~~~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~--~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPS-LDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL--FLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSS-CSHHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC--CCCEEEEEEEEC
T ss_pred cCCCEEEEECcCC-ccHHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc--cCCEEEEEeccc
Confidence 4799999999882 2110 112247999999987543210 011111 123458999994
No 248
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=21.36 E-value=27 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCC
Q 029893 73 KADLLLCESGGDNLAAN--FSRELADYIIYIIDVSG 106 (186)
Q Consensus 73 ~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~ 106 (186)
.+|+|||++.+. +... .....+|.+++++++..
T Consensus 113 ~yD~viiD~p~~-~~~~~~~~l~~ad~vi~v~~~~~ 147 (260)
T 3q9l_A 113 DFEFIVCDSPAG-IETGALMALYFADEAIITTNPEV 147 (260)
T ss_dssp TCSEEEEECCSS-SSHHHHHHHHTCSEEEEEECSSH
T ss_pred CCCEEEEcCCCC-CCHHHHHHHHhCCEEEEEecCCh
Confidence 899999999882 2111 11234799999988753
No 249
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=20.44 E-value=56 Score=23.23 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=35.0
Q ss_pred cCCcEEEEecCCCeeEEe--eeeecCceEEEEEeCCCCCCCcc--------CCCC-CCCceeEEEEecCCCCC
Q 029893 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGGDKIPR--------KGGP-GITQADLLVINKTDLAS 133 (186)
Q Consensus 72 ~~~D~iiIEtsG~~l~~~--~~~~~ad~~v~VvDa~~~~~~~~--------~~~~-~~~~adiivlNK~Dl~~ 133 (186)
..+|+|||++.|. .... .....+|.+++++.+.... ... .... .-.....+|+||+|--.
T Consensus 74 ~~yD~viiD~~~~-~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGS-LSVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSS-SSHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 4699999999983 2110 0112479999999876644 211 1110 01123389999999543
No 250
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=20.26 E-value=56 Score=26.25 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=15.5
Q ss_pred chhHhhhhhcCCcEEEEecCC
Q 029893 63 GPLEELSNLFKADLLLCESGG 83 (186)
Q Consensus 63 ~~l~~l~~~~~~D~iiIEtsG 83 (186)
..+.++.+...||+|||+|+.
T Consensus 128 ~~~~~~~~~~~yD~VIiDtpP 148 (334)
T 3iqw_A 128 AEVLKQVNSLSYETIVFDTAP 148 (334)
T ss_dssp HHHHHHHHTSSCSEEEEECCC
T ss_pred HHHHHHHHhCCCCEEEEeCCC
Confidence 344445445789999999998
Done!