BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029894
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 32 NLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMVGVGFANATATXXXXXXXXXXT 91
+LI + C T+ LC+ +L+S+PRS+S D KGL + + A A+A
Sbjct: 4 HLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDI--AQASAKQTSKIIASLTN 61
Query: 92 KTNDTTLKKVLKECADKYTYAGDSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRR 151
+ D LK + C++ Y A DSL + Q L + DY+ ++ SAA D C ++F
Sbjct: 62 QATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEG 121
Query: 152 SPGLAYPAELARREDGLKQICDVVLGIIDHIISSS 186
P + P +L + + L+ +CD+VL +I +++ S
Sbjct: 122 PPNI--PTQLHQADLKLEDLCDIVL-VISNLLPGS 153
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In
Complex With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In
Complex With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In
Complex With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In
Complex With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In
Complex With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In
Complex With A Specific Protein Inhibitor
Length = 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 32 NLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMV 70
NL++ TCKNT Y LC+ +L S+ RS++ D LA IMV
Sbjct: 4 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMV 42
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco (Ph 9.5)
Length = 150
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 32 NLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMV 70
NL++ TCKNT Y LC+ +L S+ RS++ D LA IMV
Sbjct: 5 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMV 43
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
From Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From
Tobacco In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From
Tobacco In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From
Tobacco In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From
Tobacco In Complex With Cd2+
Length = 151
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 32 NLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMV 70
NL++ TCKNT Y LC+ +L S+ RS++ D LA IMV
Sbjct: 6 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMV 44
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 103 KECADKYTYAGDSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRRSPGLAYPAELA 162
+ C D+Y A +L+ + + LA+ D + +SAA D + C + +R + + +
Sbjct: 72 RSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLR--SVDSSVV 129
Query: 163 RREDGLKQICDVVLGI 178
+K +C + L I
Sbjct: 130 NNSKTIKNLCGIALVI 145
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 103 KECADKYTYAGDSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRRSPGLAYPAELA 162
+ C D+Y A +L+ + + LA+ D + +SAA D + C + +R + + +
Sbjct: 73 RSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLR--SVDSSVV 130
Query: 163 RREDGLKQICDVVLGI 178
+K +C + L I
Sbjct: 131 NNSKTIKNLCGIALVI 146
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 103 KECADKYTYAGDSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRRSPGLAYPAELA 162
+ C D+Y A +L+ + + LA+ D + +SAA D + C + +R + + +
Sbjct: 73 RSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLR--SVDSSVV 130
Query: 163 RREDGLKQICDVVLGI 178
+K +C + L I
Sbjct: 131 NNSKTIKNLCGIALVI 146
>pdb|3E96|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Clausii
pdb|3E96|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Clausii
Length = 316
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 38 CKNT-KYYDLCVSSLKSNPRSSSVDTKGLANIMVGVGFANATA 79
C NT ++Y L + K R + G A ++ G+G+A +TA
Sbjct: 53 CGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTA 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,772,273
Number of Sequences: 62578
Number of extensions: 164536
Number of successful extensions: 331
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 9
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)