Query 029894
Match_columns 186
No_of_seqs 132 out of 962
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 2.7E-35 9.3E-40 216.8 17.1 150 31-184 3-152 (153)
2 2cj4_A Invertase inhibitor; pr 100.0 1.2E-34 3.9E-39 213.1 14.6 146 30-182 3-149 (150)
3 1x91_A Invertase/pectin methyl 100.0 1.9E-34 6.6E-39 212.5 12.7 149 30-184 4-152 (153)
4 1orj_A Flagellar protein FLIS; 69.9 20 0.00067 24.7 6.9 23 59-81 15-37 (130)
5 3iqc_A FLIS, flagellar protein 60.4 11 0.00037 26.0 4.1 26 59-84 22-47 (131)
6 1vh6_A Flagellar protein FLIS; 59.8 11 0.00038 26.5 4.1 27 59-85 19-45 (145)
7 3arc_H Photosystem II reaction 22.4 45 0.0015 19.9 1.7 22 1-22 30-51 (65)
8 1vp7_A Exodeoxyribonuclease VI 22.4 1.2E+02 0.0041 19.8 4.0 45 108-152 31-77 (100)
9 3cjh_B Mitochondrial import in 19.8 1.4E+02 0.0049 17.3 5.0 30 93-122 33-62 (64)
10 4fm3_A Uncharacterized hypothe 18.3 1.9E+02 0.0066 18.7 4.3 34 109-142 31-64 (98)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=2.7e-35 Score=216.85 Aligned_cols=150 Identities=33% Similarity=0.540 Sum_probs=139.4
Q ss_pred hHHHHHHhccCCCccchHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHH
Q 029894 31 MNLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMVGVGFANATATSSYLSSQLLSTKTNDTTLKKVLKECADKYT 110 (186)
Q Consensus 31 ~~~i~~~C~~T~~~~~C~~~L~s~p~s~~~d~~~la~~ai~~a~~~a~~~~~~i~~~l~~~~~~~~~~~~al~~C~~~y~ 110 (186)
.++|+.+|++|+||++|+++|.++|++..+|+++|+.++++++..+++.+..++.+ +.+. ..+|..+.+|++|.++|+
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~-l~~~-~~~~~~~~al~dC~e~y~ 80 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIAS-LTNQ-ATDPKLKGRYETCSENYA 80 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT-CCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999877899999999999999999999999998 8743 458999999999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHhccChhhHHHhhcCCCCCCchhhHHhhhHHHHHHHHHHHHHHHHhhc
Q 029894 111 YAGDSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRRSPGLAYPAELARREDGLKQICDVVLGIIDHIIS 184 (186)
Q Consensus 111 ~a~~~L~~a~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~~~~l~~~~~~~~~l~sialaii~~l~~ 184 (186)
+++++|++++..++.++|+++++|+|+|+++++||+|||.+.+ .++++|..++.++.+|++|+|+|+++|.-
T Consensus 81 ~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~--~~~~~l~~~~~~~~~l~s~aLai~~~l~~ 152 (153)
T 1xg2_B 81 DAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPP--NIPTQLHQADLKLEDLCDIVLVISNLLPG 152 (153)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSS--CCCHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCC--CCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998764 36789999999999999999999999864
No 2
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=1.2e-34 Score=213.08 Aligned_cols=146 Identities=28% Similarity=0.370 Sum_probs=134.8
Q ss_pred chHHHHHHhccCCCccchHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH
Q 029894 30 DMNLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMVGVGFANATATSSYLSSQLLSTKTNDTTLKKVLKECADKY 109 (186)
Q Consensus 30 ~~~~i~~~C~~T~~~~~C~~~L~s~p~s~~~d~~~la~~ai~~a~~~a~~~~~~i~~~l~~~~~~~~~~~~al~~C~~~y 109 (186)
+.++|+.+|++|+||++|+++|.++|++..+|+++|+.++++++..+++.+..++.+ +.+ ...+|..+.+|++|.++|
T Consensus 3 ~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~-l~~-~~~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 3 MNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISK-LRH-SNPPAAWKGPLKNCAFSY 80 (150)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHT-SCCCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-cCCChHHHHHHHHHHHHH
Confidence 457899999999999999999999999877899999999999999999999999998 874 345788899999999999
Q ss_pred HHHH-HHHHHHHHHhccCCHHHHHHHHHHhccChhhHHHhhcCCCCCCchhhHHhhhHHHHHHHHHHHHHHHHh
Q 029894 110 TYAG-DSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRRSPGLAYPAELARREDGLKQICDVVLGIIDHI 182 (186)
Q Consensus 110 ~~a~-~~L~~a~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~~~~l~~~~~~~~~l~sialaii~~l 182 (186)
++++ ++|++++..++.++|+++++|+|+|+++++||+|||.+. ++|+..++.++.+|++|+|+|++.|
T Consensus 81 ~~a~~~~L~~a~~~l~~~~~~~~~t~lsaAlt~~~tC~dgf~~~-----~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 81 KVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGS-----KSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTS-----CCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhCCC-----CCccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 799999999999999999999999999999999999742 4679999999999999999999876
No 3
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=1.9e-34 Score=212.45 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=136.2
Q ss_pred chHHHHHHhccCCCccchHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH
Q 029894 30 DMNLIQKTCKNTKYYDLCVSSLKSNPRSSSVDTKGLANIMVGVGFANATATSSYLSSQLLSTKTNDTTLKKVLKECADKY 109 (186)
Q Consensus 30 ~~~~i~~~C~~T~~~~~C~~~L~s~p~s~~~d~~~la~~ai~~a~~~a~~~~~~i~~~l~~~~~~~~~~~~al~~C~~~y 109 (186)
+.+.|+.+|++|+||++|+++| +|++..+|+++|++++++++..+++.+..++.+ +.+. ..+|..+.+|++|.++|
T Consensus 4 ~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~-l~~~-~~~~~~~~al~dC~e~y 79 (153)
T 1x91_A 4 DSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQS-IIDG-GVDPRSKLAYRSCVDEY 79 (153)
T ss_dssp -CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-CCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCCHHHHHHHHHHHHHH
Confidence 3467999999999999999999 676666899999999999999999999999998 7643 35899999999999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHhccChhhHHHhhcCCCCCCchhhHHhhhHHHHHHHHHHHHHHHHhhc
Q 029894 110 TYAGDSLQASGQDLATEDYDYAYLHISAAADYPNACHNAFRRSPGLAYPAELARREDGLKQICDVVLGIIDHIIS 184 (186)
Q Consensus 110 ~~a~~~L~~a~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~~~~~~~~~~l~~~~~~~~~l~sialaii~~l~~ 184 (186)
++++++|+++++.++.++|+++++|+|+|+++++||+|||.+.+ ++++++..++.++.+|++|+|+|++.|..
T Consensus 80 ~~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~--~~~~~l~~~~~~~~~l~s~aLai~~~l~~ 152 (153)
T 1x91_A 80 ESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLR--SVDSSVVNNSKTIKNLCGIALVISNMLPR 152 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccHhHHHHHhccCC--CCcCHHHHHhHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998764 36899999999999999999999998753
No 4
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=69.86 E-value=20 Score=24.67 Aligned_cols=23 Identities=0% Similarity=-0.097 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 029894 59 SVDTKGLANIMVGVGFANATATS 81 (186)
Q Consensus 59 ~~d~~~la~~ai~~a~~~a~~~~ 81 (186)
+++|.+|..+..+-++.....+.
T Consensus 15 tAsP~~Li~mLydgai~~l~~A~ 37 (130)
T 1orj_A 15 TATPLEQIILLYDKAIECLERAI 37 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777766666555553
No 5
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=60.41 E-value=11 Score=25.98 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029894 59 SVDTKGLANIMVGVGFANATATSSYL 84 (186)
Q Consensus 59 ~~d~~~la~~ai~~a~~~a~~~~~~i 84 (186)
+++|.+|..+..+-++.....+...+
T Consensus 22 tasP~~Li~mLydgal~~l~~A~~ai 47 (131)
T 3iqc_A 22 VESPAKLIEMLYEGILRFSSQAKRCI 47 (131)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777766666665443
No 6
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=59.78 E-value=11 Score=26.46 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029894 59 SVDTKGLANIMVGVGFANATATSSYLS 85 (186)
Q Consensus 59 ~~d~~~la~~ai~~a~~~a~~~~~~i~ 85 (186)
+++|.+|..+..+-++.....+...+.
T Consensus 19 tAsP~~Li~mLydgal~~l~~A~~aie 45 (145)
T 1vh6_A 19 TATPGELTLMLYNGCLKFIRLAAQAIE 45 (145)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778877777777776666654443
No 7
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=22.41 E-value=45 Score=19.88 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=12.3
Q ss_pred CCchhHHHHHHHHHHHHHHhhC
Q 029894 1 MGSSIFLFTLFIAFHLLIFRQQ 22 (186)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (186)
|+-....|++|++.+|-|+.++
T Consensus 30 Mgv~m~Lf~vFl~iiLeIYNsS 51 (65)
T 3arc_H 30 MAVFMGLFLVFLLIILEIYNST 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 4445556666666665555543
No 8
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=22.36 E-value=1.2e+02 Score=19.75 Aligned_cols=45 Identities=7% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhccCC--HHHHHHHHHHhccChhhHHHhhcCC
Q 029894 108 KYTYAGDSLQASGQDLATED--YDYAYLHISAAADYPNACHNAFRRS 152 (186)
Q Consensus 108 ~y~~a~~~L~~a~~~l~~~~--~~~a~~~lsaa~~~~~tC~d~f~~~ 152 (186)
.|+.++.+|++.+..|..|+ .+++-.....++.-...|.+-+...
T Consensus 31 sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~A 77 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQA 77 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887764 4566666666666677777777654
No 9
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=19.82 E-value=1.4e+02 Score=17.30 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029894 93 TNDTTLKKVLKECADKYTYAGDSLQASGQD 122 (186)
Q Consensus 93 ~~~~~~~~al~~C~~~y~~a~~~L~~a~~~ 122 (186)
..+.....+++.|.+-|-++-..+.+.+..
T Consensus 33 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 33 NLSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347778899999999999988777665544
No 10
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=18.33 E-value=1.9e+02 Score=18.70 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHhccCh
Q 029894 109 YTYAGDSLQASGQDLATEDYDYAYLHISAAADYP 142 (186)
Q Consensus 109 y~~a~~~L~~a~~~l~~~~~~~a~~~lsaa~~~~ 142 (186)
+..+.+.|..|-.+|..++|..++....-+..+.
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DA 64 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDA 64 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhH
Confidence 6678899999999999999999998777665543
Done!