BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029895
         (186 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O14138|NDUF7_SCHPO NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
           homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
           24843) GN=SPAC25A8.03c PE=3 SV=2
          Length = 467

 Score = 34.7 bits (78), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 41  DKPVLVRDFIHSALYHPKHGYFSQR-SRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSE 99
           D  V + D+IH + + P  GY+S+  + S   L  ++   + +G K   K  D       
Sbjct: 56  DSKVSLADYIHESTFDPSKGYYSRLWTGSTNNLSHSVHVLRKEGHKC-SKEFDPFLHGIP 114

Query: 100 I--SWFTPVELFKPWYAHGIAEAIMRTANLS----VPLKIYEIGGGSGTCAKGVMDYIML 153
           I        E  +  ++  I+  ++    L       LKIY+   G+G  A  ++DY+  
Sbjct: 115 IPQKALNIYEKQRSLFSESISNYLVLQYKLRYFPVFDLKIYDFHSGTGIIALDILDYLYK 174

Query: 154 NAPERVYNNMTY 165
           N  E VY   TY
Sbjct: 175 NHLE-VYGRTTY 185


>sp|P15029|FECD_ECOLI Fe(3+) dicitrate transport system permease protein FecD
           OS=Escherichia coli (strain K12) GN=fecD PE=1 SV=2
          Length = 318

 Score = 33.9 bits (76), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 113 YAHGIAEAIM--RTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170
           +A G+A  I+    A    P+K+   G     C   + DY+ML+ P+ V N + +++   
Sbjct: 116 FAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLT--- 172

Query: 171 QSLTGRD 177
            SL GRD
Sbjct: 173 GSLWGRD 179


>sp|A4XR57|ISPE_PSEMY 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Pseudomonas
           mendocina (strain ymp) GN=ispE PE=3 SV=1
          Length = 291

 Score = 31.2 bits (69), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 19/74 (25%)

Query: 81  LQGRKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANL---------SVPL 131
           ++GR A+ + V ++         TPVEL +PW+   + +  + TA +         + P+
Sbjct: 149 VRGRAAFAEGVGEL--------LTPVELEEPWFLVAVPQVFVSTAEVFGAPELTRDTPPI 200

Query: 132 KIYEI--GGGSGTC 143
           K+  +  GGG   C
Sbjct: 201 KVRSLLAGGGRNDC 214


>sp|A5DME6|LKA41_PICGU Leukotriene A-4 hydrolase homolog 1 OS=Meyerozyma guilliermondii
           (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
           10279 / NRRL Y-324) GN=PGUG_04447 PE=3 SV=2
          Length = 615

 Score = 30.4 bits (67), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 25  PCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQR------SRSVGVLDAAIKF 78
           P  PP+K  F T +V     L   + H +L +  H + S+       ++SV  LD  I F
Sbjct: 447 PGMPPVKPDFDTSMVDQCYQLADKWYHHSLKNKFHKFSSEDIKSFTANQSVVFLDTLIAF 506

Query: 79  NQLQGRKAYMKHVDKIYKQS----EISWFTPVELFKPWY 113
           ++L  +  +  H+D +   +    E S  T  E+   WY
Sbjct: 507 DKLDFK--WKHHLDALNTMASVYQEYSKSTNAEVLFRWY 543


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,426,581
Number of Sequences: 539616
Number of extensions: 2746105
Number of successful extensions: 6193
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6192
Number of HSP's gapped (non-prelim): 4
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)