Query 029895
Match_columns 186
No_of_seqs 119 out of 830
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1565 Uncharacterized conser 100.0 1.6E-35 3.5E-40 266.5 12.2 123 29-181 3-128 (370)
2 KOG2901 Uncharacterized conser 99.8 2.8E-21 6.2E-26 173.8 7.2 126 26-184 31-160 (415)
3 PF02636 Methyltransf_28: Puta 99.7 1.2E-16 2.7E-21 135.7 6.0 66 116-182 1-70 (252)
4 PRK00274 ksgA 16S ribosomal RN 97.5 0.00022 4.8E-09 61.6 6.6 61 101-181 23-83 (272)
5 PRK14896 ksgA 16S ribosomal RN 97.5 0.00024 5.1E-09 60.9 6.5 62 101-182 10-71 (258)
6 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00014 3.1E-09 62.4 4.3 62 99-180 9-70 (262)
7 smart00650 rADc Ribosomal RNA 97.4 0.00032 7E-09 55.9 6.0 54 118-182 2-55 (169)
8 PF05175 MTS: Methyltransferas 97.4 0.00023 5.1E-09 57.1 4.7 69 101-182 3-75 (170)
9 PHA03412 putative methyltransf 97.3 0.00044 9.4E-09 60.3 5.5 64 101-181 32-95 (241)
10 TIGR00755 ksgA dimethyladenosi 97.3 0.00059 1.3E-08 58.1 6.0 62 101-182 10-71 (253)
11 PRK06202 hypothetical protein; 97.2 0.0013 2.8E-08 54.8 7.2 49 127-180 58-106 (232)
12 PTZ00338 dimethyladenosine tra 97.1 0.0011 2.4E-08 58.6 6.4 61 100-180 16-76 (294)
13 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0018 4E-08 56.1 6.8 83 87-180 10-95 (311)
14 PRK15451 tRNA cmo(5)U34 methyl 97.0 0.0013 2.9E-08 55.7 5.7 44 129-179 56-99 (247)
15 PF12847 Methyltransf_18: Meth 97.0 0.0022 4.8E-08 46.5 5.7 43 131-182 3-45 (112)
16 PF13649 Methyltransf_25: Meth 96.9 0.0011 2.3E-08 48.2 3.9 40 133-178 1-40 (101)
17 COG3963 Phospholipid N-methylt 96.9 0.0014 3.1E-08 55.2 4.9 55 117-179 36-90 (194)
18 PRK08317 hypothetical protein; 96.8 0.0037 8E-08 50.4 6.5 56 117-180 7-62 (241)
19 PF13679 Methyltransf_32: Meth 96.8 0.0094 2E-07 46.6 8.4 60 113-177 9-68 (141)
20 TIGR02469 CbiT precorrin-6Y C5 96.8 0.0048 1E-07 45.0 6.4 50 120-178 10-59 (124)
21 PF08242 Methyltransf_12: Meth 96.8 0.00064 1.4E-08 48.9 1.4 34 134-176 1-34 (99)
22 PF13847 Methyltransf_31: Meth 96.7 0.0035 7.6E-08 48.7 5.5 44 129-180 3-46 (152)
23 TIGR02752 MenG_heptapren 2-hep 96.7 0.0047 1E-07 50.9 6.3 48 124-179 40-87 (231)
24 COG0030 KsgA Dimethyladenosine 96.7 0.003 6.4E-08 55.6 5.2 60 100-179 10-69 (259)
25 PRK13944 protein-L-isoaspartat 96.7 0.005 1.1E-07 50.9 6.3 54 119-180 62-115 (205)
26 TIGR03438 probable methyltrans 96.7 0.0038 8.3E-08 54.7 5.8 40 129-176 63-102 (301)
27 PRK13942 protein-L-isoaspartat 96.6 0.0053 1.1E-07 51.2 6.0 55 119-181 66-120 (212)
28 PRK08287 cobalt-precorrin-6Y C 96.6 0.0083 1.8E-07 48.4 6.9 55 116-179 18-72 (187)
29 PRK10258 biotin biosynthesis p 96.6 0.0077 1.7E-07 50.5 6.9 56 115-181 28-83 (251)
30 PF13489 Methyltransf_23: Meth 96.6 0.0076 1.7E-07 45.8 6.3 49 118-177 10-59 (161)
31 PRK01683 trans-aconitate 2-met 96.5 0.0087 1.9E-07 50.3 6.9 54 118-180 20-73 (258)
32 PRK00121 trmB tRNA (guanine-N( 96.5 0.0025 5.4E-08 52.7 3.4 60 111-181 24-83 (202)
33 PRK07402 precorrin-6B methylas 96.5 0.01 2.3E-07 48.2 6.9 63 111-182 22-84 (196)
34 PRK00107 gidB 16S rRNA methylt 96.5 0.023 5E-07 47.1 9.0 42 129-179 45-86 (187)
35 PRK00216 ubiE ubiquinone/menaq 96.5 0.011 2.4E-07 48.0 7.0 53 121-181 43-95 (239)
36 TIGR00080 pimt protein-L-isoas 96.4 0.0087 1.9E-07 49.6 6.3 55 119-181 67-121 (215)
37 PRK11036 putative S-adenosyl-L 96.4 0.017 3.7E-07 48.9 8.2 43 128-181 43-85 (255)
38 TIGR00740 methyltransferase, p 96.4 0.0048 1.1E-07 51.6 4.7 45 129-180 53-97 (239)
39 PLN02233 ubiquinone biosynthes 96.4 0.016 3.5E-07 49.8 8.0 49 122-178 66-114 (261)
40 PRK00312 pcm protein-L-isoaspa 96.4 0.016 3.5E-07 47.6 7.5 60 102-181 60-119 (212)
41 TIGR03587 Pse_Me-ase pseudamin 96.3 0.012 2.6E-07 49.0 6.5 44 128-180 42-85 (204)
42 PRK11088 rrmA 23S rRNA methylt 96.3 0.014 3E-07 50.1 6.8 69 102-179 61-129 (272)
43 TIGR02072 BioC biotin biosynth 96.2 0.015 3.3E-07 47.0 6.5 55 116-179 18-75 (240)
44 PRK09328 N5-glutamine S-adenos 96.2 0.015 3.2E-07 49.0 6.7 58 115-181 94-151 (275)
45 TIGR02987 met_A_Alw26 type II 96.2 0.011 2.3E-07 55.5 6.1 73 101-179 5-80 (524)
46 TIGR01983 UbiG ubiquinone bios 96.2 0.025 5.4E-07 46.1 7.5 51 117-178 29-83 (224)
47 TIGR01934 MenG_MenH_UbiE ubiqu 96.1 0.012 2.6E-07 47.3 5.3 52 121-180 31-82 (223)
48 PRK05785 hypothetical protein; 96.1 0.048 1E-06 46.0 9.1 40 130-179 52-91 (226)
49 TIGR00477 tehB tellurite resis 96.1 0.016 3.4E-07 47.6 6.0 39 128-177 29-67 (195)
50 TIGR03533 L3_gln_methyl protei 96.1 0.043 9.4E-07 47.9 9.0 72 101-181 91-164 (284)
51 COG2263 Predicted RNA methylas 96.0 0.019 4.1E-07 49.0 6.3 64 101-183 23-89 (198)
52 PRK00377 cbiT cobalt-precorrin 96.0 0.015 3.2E-07 47.6 5.5 50 124-181 35-84 (198)
53 PF13659 Methyltransf_26: Meth 96.0 0.011 2.4E-07 43.2 4.2 42 131-182 2-43 (117)
54 PRK14103 trans-aconitate 2-met 96.0 0.02 4.4E-07 48.4 6.3 49 121-178 21-69 (255)
55 KOG0820 Ribosomal RNA adenine 95.9 0.019 4.2E-07 51.6 6.1 57 118-185 47-104 (315)
56 TIGR02021 BchM-ChlM magnesium 95.9 0.028 6E-07 46.3 6.7 40 128-178 54-93 (219)
57 PRK07580 Mg-protoporphyrin IX 95.8 0.027 5.8E-07 46.1 6.4 42 128-180 62-103 (230)
58 TIGR00537 hemK_rel_arch HemK-r 95.8 0.026 5.5E-07 45.2 6.1 42 129-181 19-60 (179)
59 TIGR03534 RF_mod_PrmC protein- 95.8 0.03 6.5E-07 46.2 6.6 56 116-181 75-130 (251)
60 smart00138 MeTrc Methyltransfe 95.8 0.05 1.1E-06 47.1 8.1 131 20-180 16-150 (264)
61 PRK11805 N5-glutamine S-adenos 95.8 0.073 1.6E-06 47.2 9.2 88 85-181 74-176 (307)
62 PHA03411 putative methyltransf 95.8 0.014 2.9E-07 52.1 4.5 61 101-181 47-107 (279)
63 PRK05134 bifunctional 3-demeth 95.7 0.065 1.4E-06 44.2 8.3 49 119-178 38-86 (233)
64 PLN02244 tocopherol O-methyltr 95.6 0.07 1.5E-06 47.7 8.7 43 128-180 117-159 (340)
65 TIGR00138 gidB 16S rRNA methyl 95.6 0.12 2.6E-06 42.3 9.2 40 130-178 43-82 (181)
66 TIGR00091 tRNA (guanine-N(7)-) 95.5 0.018 3.8E-07 47.2 4.1 40 130-178 17-56 (194)
67 TIGR03704 PrmC_rel_meth putati 95.5 0.049 1.1E-06 46.8 6.8 72 102-182 57-130 (251)
68 cd02440 AdoMet_MTases S-adenos 95.5 0.023 4.9E-07 38.2 3.9 38 132-179 1-38 (107)
69 TIGR03439 methyl_EasF probable 95.4 0.036 7.9E-07 49.9 6.2 48 128-180 75-123 (319)
70 PF08241 Methyltransf_11: Meth 95.4 0.027 5.8E-07 38.8 4.2 37 134-180 1-37 (95)
71 PTZ00098 phosphoethanolamine N 95.4 0.055 1.2E-06 46.6 6.9 63 101-180 31-93 (263)
72 PRK14967 putative methyltransf 95.4 0.045 9.7E-07 45.5 6.2 56 116-182 24-79 (223)
73 PRK04457 spermidine synthase; 95.4 0.057 1.2E-06 46.7 7.0 46 128-182 65-110 (262)
74 PRK11207 tellurite resistance 95.4 0.038 8.3E-07 45.4 5.6 39 129-178 30-68 (197)
75 TIGR00536 hemK_fam HemK family 95.4 0.051 1.1E-06 47.1 6.6 42 131-181 116-157 (284)
76 PF01209 Ubie_methyltran: ubiE 95.2 0.014 3E-07 49.9 2.5 53 119-179 37-89 (233)
77 PRK00811 spermidine synthase; 95.0 0.079 1.7E-06 46.3 6.8 62 110-182 59-120 (283)
78 PF01135 PCMT: Protein-L-isoas 95.0 0.042 9.2E-07 46.4 5.0 54 120-181 63-116 (209)
79 TIGR00417 speE spermidine synt 95.0 0.067 1.5E-06 46.1 6.3 61 110-181 55-115 (270)
80 PF07757 AdoMet_MTase: Predict 94.9 0.081 1.8E-06 41.5 5.9 56 90-145 13-74 (112)
81 PRK14968 putative methyltransf 94.9 0.082 1.8E-06 41.5 6.1 39 129-178 23-61 (188)
82 PRK01544 bifunctional N5-gluta 94.8 0.075 1.6E-06 50.3 6.6 43 130-181 139-181 (506)
83 PRK15001 SAM-dependent 23S rib 94.8 0.076 1.6E-06 48.9 6.4 72 101-181 200-271 (378)
84 TIGR00438 rrmJ cell division p 94.8 0.068 1.5E-06 43.1 5.5 40 127-174 30-69 (188)
85 PLN02396 hexaprenyldihydroxybe 94.7 0.11 2.4E-06 46.7 7.1 40 129-179 131-170 (322)
86 KOG0822 Protein kinase inhibit 94.6 0.2 4.2E-06 48.9 8.8 68 112-184 347-420 (649)
87 PF05185 PRMT5: PRMT5 arginine 94.6 0.14 3E-06 48.1 7.8 60 112-176 165-228 (448)
88 KOG2904 Predicted methyltransf 94.6 0.087 1.9E-06 47.7 6.0 60 115-183 131-193 (328)
89 PRK13943 protein-L-isoaspartat 94.5 0.087 1.9E-06 47.4 5.9 50 121-178 72-121 (322)
90 PRK04148 hypothetical protein; 94.3 0.18 4E-06 40.3 6.9 54 116-180 3-57 (134)
91 PRK09489 rsmC 16S ribosomal RN 94.2 0.13 2.9E-06 46.4 6.5 71 101-180 168-238 (342)
92 TIGR00452 methyltransferase, p 94.2 0.16 3.5E-06 45.5 6.9 63 101-177 97-159 (314)
93 PRK13168 rumA 23S rRNA m(5)U19 94.1 0.15 3.3E-06 47.0 6.8 59 112-181 280-338 (443)
94 COG2226 UbiE Methylase involve 94.0 0.43 9.4E-06 41.5 9.0 47 126-181 48-94 (238)
95 TIGR01177 conserved hypothetic 93.9 0.23 4.9E-06 44.0 7.3 64 101-180 159-222 (329)
96 KOG1540 Ubiquinone biosynthesi 93.9 0.14 3E-06 45.9 5.8 49 126-177 97-145 (296)
97 COG2890 HemK Methylase of poly 93.9 0.16 3.4E-06 44.7 6.1 58 114-181 96-153 (280)
98 PRK03522 rumB 23S rRNA methylu 93.7 0.21 4.6E-06 44.0 6.8 43 129-182 173-215 (315)
99 PF10294 Methyltransf_16: Puta 93.7 0.25 5.4E-06 40.0 6.7 50 115-173 25-80 (173)
100 PRK01581 speE spermidine synth 93.7 0.23 4.9E-06 46.0 7.1 59 111-180 134-192 (374)
101 TIGR02716 C20_methyl_CrtF C-20 93.7 0.21 4.6E-06 43.4 6.6 45 121-174 141-185 (306)
102 COG4123 Predicted O-methyltran 93.7 0.1 2.2E-06 45.8 4.6 46 126-180 41-86 (248)
103 COG2518 Pcm Protein-L-isoaspar 93.6 0.27 5.8E-06 42.3 6.9 61 101-181 53-113 (209)
104 PRK04266 fibrillarin; Provisio 93.6 0.18 3.8E-06 43.0 5.8 43 125-176 68-110 (226)
105 PRK12335 tellurite resistance 93.5 0.15 3.3E-06 44.2 5.4 38 130-178 121-158 (287)
106 PLN02336 phosphoethanolamine N 93.5 0.2 4.3E-06 46.2 6.4 50 121-180 258-307 (475)
107 PRK11705 cyclopropane fatty ac 93.5 0.23 5E-06 45.4 6.7 51 122-182 160-210 (383)
108 PLN02336 phosphoethanolamine N 93.4 0.2 4.4E-06 46.1 6.4 48 120-178 28-75 (475)
109 COG2519 GCD14 tRNA(1-methylade 93.3 0.22 4.8E-06 44.0 6.0 55 119-181 84-138 (256)
110 PF09243 Rsm22: Mitochondrial 93.3 0.15 3.3E-06 44.4 5.0 44 129-180 33-76 (274)
111 PRK00517 prmA ribosomal protei 93.2 0.27 5.9E-06 41.8 6.3 43 129-181 119-161 (250)
112 PRK14121 tRNA (guanine-N(7)-)- 93.1 0.17 3.7E-06 47.0 5.3 41 128-177 121-161 (390)
113 PRK14966 unknown domain/N5-glu 93.1 0.23 4.9E-06 46.7 6.1 56 115-181 239-294 (423)
114 PLN02366 spermidine synthase 93.1 0.33 7E-06 43.4 6.9 60 111-181 75-134 (308)
115 COG2242 CobL Precorrin-6B meth 93.0 0.31 6.7E-06 41.3 6.3 50 125-183 30-79 (187)
116 PF05206 TRM13: Methyltransfer 93.0 0.31 6.7E-06 42.8 6.5 41 128-172 17-57 (259)
117 PF01596 Methyltransf_3: O-met 92.7 0.15 3.3E-06 43.0 4.1 83 84-181 7-89 (205)
118 PRK06922 hypothetical protein; 92.7 0.56 1.2E-05 46.5 8.5 41 129-178 418-458 (677)
119 PLN02585 magnesium protoporphy 92.7 0.33 7.2E-06 43.5 6.4 38 129-177 144-181 (315)
120 PLN02490 MPBQ/MSBQ methyltrans 92.6 0.14 3E-06 46.5 3.9 41 129-178 113-153 (340)
121 TIGR02081 metW methionine bios 92.5 0.22 4.8E-06 40.3 4.7 38 130-177 14-51 (194)
122 TIGR00479 rumA 23S rRNA (uraci 92.4 0.34 7.4E-06 44.3 6.3 59 113-182 276-334 (431)
123 PRK03612 spermidine synthase; 92.4 0.36 7.7E-06 45.9 6.6 58 112-180 282-339 (521)
124 PRK11188 rrmJ 23S rRNA methylt 92.1 0.27 5.9E-06 41.0 4.8 36 129-172 51-86 (209)
125 PF08704 GCD14: tRNA methyltra 92.1 0.39 8.6E-06 41.8 5.9 55 120-182 31-85 (247)
126 PLN02781 Probable caffeoyl-CoA 92.0 0.26 5.6E-06 41.9 4.6 45 129-181 68-112 (234)
127 TIGR02143 trmA_only tRNA (urac 91.9 0.72 1.6E-05 41.7 7.6 56 114-181 183-238 (353)
128 PF00891 Methyltransf_2: O-met 91.8 0.7 1.5E-05 38.5 7.0 41 122-171 93-133 (241)
129 TIGR00406 prmA ribosomal prote 91.8 0.28 6E-06 42.8 4.6 42 130-181 160-201 (288)
130 PF07021 MetW: Methionine bios 91.7 0.49 1.1E-05 40.2 5.9 39 130-178 14-52 (193)
131 PRK11873 arsM arsenite S-adeno 91.6 0.31 6.7E-06 41.4 4.8 45 128-180 76-120 (272)
132 KOG4300 Predicted methyltransf 91.6 0.81 1.7E-05 40.2 7.2 68 101-178 41-115 (252)
133 TIGR02085 meth_trns_rumB 23S r 91.3 0.6 1.3E-05 42.4 6.5 41 130-181 234-274 (374)
134 PF02390 Methyltransf_4: Putat 91.1 0.62 1.4E-05 38.7 5.9 38 132-178 20-57 (195)
135 PRK10909 rsmD 16S rRNA m(2)G96 91.1 0.5 1.1E-05 39.6 5.4 42 130-181 54-95 (199)
136 COG2813 RsmC 16S RNA G1207 met 91.0 0.62 1.3E-05 42.0 6.2 67 101-179 130-199 (300)
137 PLN02823 spermine synthase 90.9 0.86 1.9E-05 41.3 7.0 59 112-181 88-146 (336)
138 PRK15068 tRNA mo(5)U34 methylt 90.7 0.45 9.7E-06 42.4 5.0 39 128-176 121-159 (322)
139 PRK10901 16S rRNA methyltransf 90.5 0.6 1.3E-05 43.0 5.7 47 126-181 241-287 (427)
140 TIGR00308 TRM1 tRNA(guanine-26 90.1 0.73 1.6E-05 42.3 5.9 73 101-181 16-88 (374)
141 PTZ00146 fibrillarin; Provisio 90.1 0.62 1.3E-05 41.8 5.3 38 130-175 133-170 (293)
142 COG0220 Predicted S-adenosylme 89.8 0.96 2.1E-05 38.9 6.1 43 126-177 45-87 (227)
143 COG0421 SpeE Spermidine syntha 89.6 0.62 1.3E-05 41.4 4.9 62 110-182 59-120 (282)
144 PRK14902 16S rRNA methyltransf 89.0 0.97 2.1E-05 41.7 5.9 47 126-180 247-293 (444)
145 PRK05031 tRNA (uracil-5-)-meth 89.0 1.7 3.8E-05 39.3 7.5 56 114-181 192-247 (362)
146 TIGR00563 rsmB ribosomal RNA s 88.7 1.1 2.3E-05 41.3 6.0 50 123-181 232-281 (426)
147 TIGR03840 TMPT_Se_Te thiopurin 88.5 2.5 5.3E-05 35.6 7.6 70 90-177 2-71 (213)
148 PRK13255 thiopurine S-methyltr 88.3 2.6 5.7E-05 35.6 7.7 69 90-177 5-74 (218)
149 KOG3191 Predicted N6-DNA-methy 88.1 1.7 3.8E-05 37.3 6.4 70 101-180 17-86 (209)
150 PRK14904 16S rRNA methyltransf 87.7 1.4 3.1E-05 40.7 6.2 47 126-180 247-293 (445)
151 TIGR00446 nop2p NOL1/NOP2/sun 87.5 1.5 3.2E-05 37.7 5.8 47 126-180 68-114 (264)
152 PF01564 Spermine_synth: Sperm 87.4 1.4 3E-05 37.9 5.6 61 110-181 59-119 (246)
153 TIGR00095 RNA methyltransferas 87.0 1.5 3.2E-05 36.1 5.3 41 130-180 50-90 (189)
154 PRK14901 16S rRNA methyltransf 86.9 1.5 3.3E-05 40.4 5.8 46 125-178 248-293 (434)
155 PF08123 DOT1: Histone methyla 86.6 1.1 2.5E-05 37.8 4.5 59 112-179 22-83 (205)
156 PRK14903 16S rRNA methyltransf 86.4 1.6 3.6E-05 40.5 5.8 48 126-181 234-281 (431)
157 PTZ00357 methyltransferase; Pr 86.2 3 6.6E-05 42.4 7.8 38 131-173 702-739 (1072)
158 COG4122 Predicted O-methyltran 86.2 1.5 3.3E-05 37.7 5.2 56 118-181 48-103 (219)
159 TIGR00478 tly hemolysin TlyA f 86.1 2.5 5.5E-05 36.3 6.4 38 129-176 75-113 (228)
160 PRK00536 speE spermidine synth 86.0 2.3 5E-05 37.5 6.2 57 111-180 56-112 (262)
161 COG4106 Tam Trans-aconitate me 85.9 1.5 3.3E-05 38.7 5.0 46 124-178 25-70 (257)
162 PLN02476 O-methyltransferase 85.8 1.5 3.3E-05 38.9 5.0 47 128-182 117-163 (278)
163 PRK04338 N(2),N(2)-dimethylgua 85.1 4.1 9E-05 37.4 7.7 69 101-181 32-100 (382)
164 PLN03075 nicotianamine synthas 85.1 2.6 5.7E-05 37.8 6.2 47 129-182 123-169 (296)
165 PF02353 CMAS: Mycolic acid cy 84.6 2 4.3E-05 37.7 5.2 42 126-177 59-100 (273)
166 PLN02672 methionine S-methyltr 84.6 1.4 3.1E-05 45.9 4.9 43 131-182 120-162 (1082)
167 PRK11727 23S rRNA mA1618 methy 84.5 2.4 5.1E-05 38.4 5.8 121 48-181 27-157 (321)
168 PF03848 TehB: Tellurite resis 84.1 3.1 6.7E-05 35.1 5.9 41 126-177 27-67 (192)
169 COG0286 HsdM Type I restrictio 84.0 4.7 0.0001 38.2 7.8 64 101-178 167-230 (489)
170 PF06325 PrmA: Ribosomal prote 82.8 5 0.00011 35.8 7.1 91 81-182 91-204 (295)
171 PRK11783 rlmL 23S rRNA m(2)G24 82.4 4.5 9.8E-05 39.9 7.2 67 115-182 175-276 (702)
172 PRK01747 mnmC bifunctional tRN 81.5 5.3 0.00011 38.7 7.2 49 127-175 55-106 (662)
173 KOG2899 Predicted methyltransf 80.2 2.3 5E-05 38.1 3.9 45 129-182 58-102 (288)
174 KOG1541 Predicted protein carb 79.4 2.1 4.5E-05 38.0 3.4 64 102-177 23-87 (270)
175 KOG0821 Predicted ribosomal RN 77.3 4.6 0.0001 36.1 4.9 52 115-176 36-87 (326)
176 COG2230 Cfa Cyclopropane fatty 76.7 8.5 0.00018 34.5 6.5 47 121-177 64-110 (283)
177 COG4976 Predicted methyltransf 76.6 3.7 7.9E-05 36.7 4.0 40 130-180 126-165 (287)
178 PF03291 Pox_MCEL: mRNA cappin 75.7 3.9 8.4E-05 37.0 4.1 39 129-177 62-100 (331)
179 COG3897 Predicted methyltransf 75.2 2.1 4.4E-05 37.1 2.1 31 114-144 64-94 (218)
180 PLN02589 caffeoyl-CoA O-methyl 75.1 5 0.00011 34.9 4.5 60 110-181 64-123 (247)
181 KOG3420 Predicted RNA methylas 73.9 5.2 0.00011 33.6 4.1 63 101-178 25-87 (185)
182 PF05401 NodS: Nodulation prot 73.7 3 6.5E-05 35.7 2.7 44 128-182 42-85 (201)
183 COG4301 Uncharacterized conser 73.7 8.5 0.00018 34.8 5.6 52 117-176 69-120 (321)
184 PRK01544 bifunctional N5-gluta 72.9 5.7 0.00012 37.8 4.7 39 129-176 347-385 (506)
185 KOG2361 Predicted methyltransf 72.9 4 8.7E-05 36.3 3.4 40 132-178 74-113 (264)
186 KOG2811 Uncharacterized conser 72.5 7.2 0.00016 36.7 5.0 36 131-172 184-219 (420)
187 PRK00050 16S rRNA m(4)C1402 me 70.6 8.6 0.00019 34.4 5.1 54 118-179 8-61 (296)
188 PF12147 Methyltransf_20: Puta 70.5 23 0.0005 32.3 7.7 59 112-177 118-176 (311)
189 PF03602 Cons_hypoth95: Conser 70.1 12 0.00026 30.8 5.5 55 115-181 30-84 (183)
190 COG4121 Uncharacterized conser 69.7 4.9 0.00011 35.5 3.2 76 101-176 26-108 (252)
191 PF06080 DUF938: Protein of un 69.6 7.9 0.00017 33.1 4.4 35 132-175 28-62 (204)
192 PF05219 DREV: DREV methyltran 67.4 9.1 0.0002 34.1 4.4 39 129-178 94-132 (265)
193 KOG3010 Methyltransferase [Gen 67.0 5.2 0.00011 35.6 2.8 36 132-178 36-71 (261)
194 PF01170 UPF0020: Putative RNA 66.5 21 0.00045 29.0 6.1 75 102-182 6-81 (179)
195 COG0500 SmtA SAM-dependent met 66.0 15 0.00032 24.5 4.4 37 133-178 52-88 (257)
196 KOG2915 tRNA(1-methyladenosine 65.0 17 0.00037 33.1 5.7 52 119-178 95-146 (314)
197 PTZ00387 epsilon tubulin; Prov 64.9 33 0.00071 32.6 7.9 55 102-156 102-161 (465)
198 COG2227 UbiG 2-polyprenyl-3-me 64.2 14 0.0003 32.6 4.9 39 129-178 59-97 (243)
199 PF05148 Methyltransf_8: Hypot 63.8 10 0.00022 32.9 4.0 53 85-147 38-90 (219)
200 PRK15128 23S rRNA m(5)C1962 me 63.3 12 0.00026 34.6 4.6 41 130-180 221-261 (396)
201 KOG1270 Methyltransferases [Co 63.2 5.9 0.00013 35.6 2.5 38 130-178 90-127 (282)
202 PF05724 TPMT: Thiopurine S-me 63.2 32 0.00069 29.1 6.8 71 89-177 4-74 (218)
203 PF07587 PSD1: Protein of unkn 62.4 6.8 0.00015 34.1 2.7 52 101-154 8-61 (266)
204 COG2264 PrmA Ribosomal protein 62.4 5.3 0.00011 36.1 2.0 40 129-178 162-201 (300)
205 PRK11783 rlmL 23S rRNA m(2)G24 62.3 11 0.00024 37.3 4.4 43 130-182 539-581 (702)
206 PRK13256 thiopurine S-methyltr 61.7 62 0.0013 27.9 8.4 72 89-178 10-81 (226)
207 TIGR01444 fkbM_fam methyltrans 60.8 7.2 0.00016 29.3 2.3 19 132-150 1-19 (143)
208 COG4076 Predicted RNA methylas 60.7 22 0.00048 31.1 5.4 52 111-181 22-73 (252)
209 PLN02668 indole-3-acetate carb 59.4 10 0.00022 35.3 3.5 26 129-154 63-92 (386)
210 KOG3924 Putative protein methy 56.7 22 0.00047 33.7 5.1 71 87-176 157-230 (419)
211 PF14737 DUF4470: Domain of un 56.7 18 0.0004 26.7 3.8 48 126-178 20-69 (100)
212 PF02254 TrkA_N: TrkA-N domain 53.2 22 0.00047 25.8 3.7 35 138-179 4-38 (116)
213 TIGR01138 cysM cysteine syntha 52.8 1.6E+02 0.0034 25.7 9.8 50 115-171 150-199 (290)
214 PF05958 tRNA_U5-meth_tr: tRNA 52.7 14 0.00031 33.3 3.2 55 115-181 183-237 (352)
215 COG0802 Predicted ATPase or ki 51.7 19 0.00041 29.5 3.4 54 110-171 11-66 (149)
216 TIGR01275 ACC_deam_rel pyridox 51.0 1.7E+02 0.0036 25.4 10.6 52 117-173 156-207 (311)
217 PF01739 CheR: CheR methyltran 51.0 60 0.0013 27.1 6.4 54 127-181 29-83 (196)
218 cd02190 epsilon_tubulin The tu 48.7 91 0.002 28.6 7.8 47 110-156 78-129 (379)
219 cd06059 Tubulin The tubulin su 47.2 96 0.0021 28.2 7.6 46 111-156 69-119 (382)
220 KOG1271 Methyltransferases [Ge 47.0 28 0.00062 30.2 3.9 19 132-150 70-88 (227)
221 PLN02881 tetrahydrofolylpolygl 46.3 69 0.0015 31.1 6.8 93 41-142 70-172 (530)
222 PF13578 Methyltransf_24: Meth 46.0 11 0.00023 27.2 1.1 34 134-173 1-34 (106)
223 PF01555 N6_N4_Mtase: DNA meth 45.3 44 0.00096 26.4 4.7 55 112-178 175-229 (231)
224 PF08157 NUC129: NUC129 domain 44.5 14 0.00031 26.2 1.4 14 45-58 18-31 (63)
225 COG0116 Predicted N6-adenine-s 43.5 48 0.001 31.0 5.1 32 114-145 176-207 (381)
226 PF03514 GRAS: GRAS domain fam 41.9 67 0.0014 29.4 5.8 57 112-170 92-149 (374)
227 KOG1499 Protein arginine N-met 41.9 29 0.00062 32.2 3.4 57 108-174 25-95 (346)
228 KOG2793 Putative N2,N2-dimethy 40.1 26 0.00057 30.8 2.8 21 129-151 86-106 (248)
229 KOG1500 Protein arginine N-met 38.7 52 0.0011 31.3 4.5 33 130-172 178-210 (517)
230 PLN02356 phosphateglycerate ki 38.4 1.3E+02 0.0027 28.5 7.1 53 112-171 234-286 (423)
231 COG1352 CheR Methylase of chem 37.9 2E+02 0.0043 25.5 7.9 62 115-177 79-144 (268)
232 PTZ00335 tubulin alpha chain; 37.6 1.6E+02 0.0035 27.8 7.7 46 111-156 112-162 (448)
233 KOG3178 Hydroxyindole-O-methyl 37.3 54 0.0012 30.3 4.4 50 101-150 141-198 (342)
234 PF01269 Fibrillarin: Fibrilla 37.0 87 0.0019 27.5 5.4 39 130-176 74-112 (229)
235 cd02187 beta_tubulin The tubul 36.6 2.6E+02 0.0056 26.1 8.8 25 132-156 134-159 (425)
236 COG5459 Predicted rRNA methyla 36.5 8.7 0.00019 36.4 -0.8 41 131-179 115-155 (484)
237 PF05891 Methyltransf_PK: AdoM 36.1 21 0.00045 31.0 1.5 42 129-180 55-96 (218)
238 cd06449 ACCD Aminocyclopropane 36.0 1.3E+02 0.0029 26.1 6.5 53 115-172 158-211 (307)
239 PF00091 Tubulin: Tubulin/FtsZ 35.9 1.4E+02 0.0031 24.6 6.5 55 102-156 95-154 (216)
240 COG0266 Nei Formamidopyrimidin 35.8 9.2 0.0002 34.2 -0.8 43 29-75 205-247 (273)
241 cd00286 Tubulin_FtsZ Tubulin/F 35.7 1.9E+02 0.0042 25.4 7.6 44 113-156 71-119 (328)
242 COG4262 Predicted spermidine s 34.9 52 0.0011 31.5 3.9 41 130-179 290-330 (508)
243 PHA01634 hypothetical protein 33.3 55 0.0012 26.9 3.4 43 130-182 29-71 (156)
244 PRK10846 bifunctional folylpol 32.6 2.4E+02 0.0053 25.7 7.9 88 41-141 58-153 (416)
245 PF08003 Methyltransf_9: Prote 31.9 36 0.00079 31.1 2.4 37 129-175 115-151 (315)
246 COG1255 Uncharacterized protei 31.2 1.6E+02 0.0034 23.7 5.6 45 118-175 5-49 (129)
247 KOG2918 Carboxymethyl transfer 30.8 1.3E+02 0.0027 27.9 5.6 68 104-178 59-129 (335)
248 PRK10611 chemotaxis methyltran 30.6 2.9E+02 0.0063 24.6 7.8 51 129-180 115-165 (287)
249 KOG3987 Uncharacterized conser 30.6 31 0.00068 30.6 1.7 24 129-152 112-135 (288)
250 PRK10717 cysteine synthase A; 29.8 1.9E+02 0.0041 25.5 6.5 50 116-172 164-213 (330)
251 PLN03013 cysteine synthase 29.7 1.7E+02 0.0037 27.7 6.5 50 115-171 267-316 (429)
252 PRK10466 hybD hydrogenase 2 ma 29.6 1.6E+02 0.0035 23.5 5.6 37 113-153 18-54 (164)
253 PLN00221 tubulin alpha chain; 29.5 3.3E+02 0.0072 25.7 8.4 42 115-156 116-162 (450)
254 PF03141 Methyltransf_29: Puta 29.3 54 0.0012 31.9 3.2 20 131-150 119-138 (506)
255 PF07942 N2227: N2227-like pro 29.1 1.3E+02 0.0028 26.8 5.3 49 100-150 23-77 (270)
256 PRK03910 D-cysteine desulfhydr 29.1 4E+02 0.0087 23.5 8.9 52 116-172 168-220 (331)
257 KOG2651 rRNA adenine N-6-methy 29.0 1.6E+02 0.0035 28.3 6.1 39 130-178 154-192 (476)
258 PF03492 Methyltransf_7: SAM d 27.2 84 0.0018 28.3 3.9 29 126-154 13-45 (334)
259 KOG2940 Predicted methyltransf 27.0 2.1E+02 0.0045 26.0 6.1 83 85-180 29-113 (325)
260 COG2344 AT-rich DNA-binding pr 26.8 1.9E+02 0.0042 25.1 5.8 33 117-151 71-103 (211)
261 KOG1661 Protein-L-isoaspartate 26.8 1.4E+02 0.0031 26.3 5.1 46 129-181 82-127 (237)
262 COG0133 TrpB Tryptophan syntha 26.6 2.3E+02 0.005 26.7 6.6 85 16-141 152-236 (396)
263 PRK14045 1-aminocyclopropane-1 26.1 4.6E+02 0.01 23.2 9.4 38 130-172 184-221 (329)
264 PLN02556 cysteine synthase/L-3 26.0 2.3E+02 0.005 25.9 6.5 49 116-171 204-252 (368)
265 KOG1252 Cystathionine beta-syn 25.8 82 0.0018 29.4 3.6 40 128-172 210-249 (362)
266 PRK11761 cysM cysteine synthas 25.2 4.6E+02 0.01 22.9 9.1 50 115-171 154-203 (296)
267 TIGR01124 ilvA_2Cterm threonin 25.1 6.1E+02 0.013 24.2 10.0 51 116-173 154-204 (499)
268 KOG1975 mRNA cap methyltransfe 24.8 97 0.0021 29.1 3.8 36 132-177 120-155 (389)
269 cd00640 Trp-synth-beta_II Tryp 24.8 4E+02 0.0086 22.0 9.7 49 116-170 140-188 (244)
270 PRK07476 eutB threonine dehydr 23.8 3.8E+02 0.0083 23.5 7.4 50 115-172 155-204 (322)
271 TIGR00150 HI0065_YjeE ATPase, 23.8 1.1E+02 0.0024 24.2 3.6 18 135-152 30-47 (133)
272 KOG3045 Predicted RNA methylas 23.6 72 0.0016 29.2 2.7 21 127-147 178-198 (325)
273 PLN02970 serine racemase 23.4 4.4E+02 0.0095 23.3 7.7 49 116-172 164-212 (328)
274 PRK08639 threonine dehydratase 23.3 2.8E+02 0.0061 25.6 6.6 52 115-171 164-215 (420)
275 KOG3790 Uncharacterized conser 23.2 1E+02 0.0022 30.0 3.7 73 79-152 151-233 (529)
276 cd03287 ABC_MSH3_euk MutS3 hom 23.2 4.3E+02 0.0093 22.3 7.3 45 128-178 110-160 (222)
277 cd01561 CBS_like CBS_like: Thi 23.0 4.8E+02 0.01 22.3 9.7 51 115-172 147-197 (291)
278 PRK10646 ADP-binding protein; 22.9 1.4E+02 0.003 24.3 4.1 33 135-170 36-68 (153)
279 PF04672 Methyltransf_19: S-ad 22.9 1.1E+02 0.0025 27.2 3.8 84 83-176 24-109 (267)
280 TIGR01137 cysta_beta cystathio 22.7 2.9E+02 0.0062 25.2 6.5 51 115-172 157-207 (454)
281 COG2265 TrmA SAM-dependent met 22.7 1.3E+02 0.0028 28.3 4.4 58 113-181 277-334 (432)
282 PF11312 DUF3115: Protein of u 22.5 3.2E+02 0.0069 25.1 6.6 42 130-172 87-140 (315)
283 COG0357 GidB Predicted S-adeno 21.8 1.2E+02 0.0026 26.1 3.6 53 114-175 47-104 (215)
284 KOG2798 Putative trehalase [Ca 21.8 1.6E+02 0.0035 27.5 4.7 21 129-149 150-170 (369)
285 PF08841 DDR: Diol dehydratase 21.2 50 0.0011 30.3 1.3 37 103-140 109-145 (332)
286 PRK08638 threonine dehydratase 20.9 5.4E+02 0.012 23.0 7.8 49 115-171 163-211 (333)
287 PHA03297 envelope glycoprotein 20.5 36 0.00079 28.5 0.2 25 124-148 34-58 (185)
288 TIGR01139 cysK cysteine syntha 20.3 5.6E+02 0.012 22.0 9.4 55 111-172 145-200 (298)
289 COG1331 Highly conserved prote 20.2 77 0.0017 31.9 2.4 28 46-73 301-329 (667)
290 PRK06260 threonine synthase; V 20.0 5.1E+02 0.011 23.6 7.6 83 86-172 174-260 (397)
No 1
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=266.53 Aligned_cols=123 Identities=27% Similarity=0.482 Sum_probs=116.8
Q ss_pred hHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcCCcccccccc
Q 029895 29 PLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVEL 108 (186)
Q Consensus 29 ~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~ei 108 (186)
+++.+++..|..+++|+|+|||++|||+|++|||++ ..+||+.| ||+||||+
T Consensus 3 ~~~~~~~~~i~~~g~i~f~~fM~~~L~~p~~GYYs~-~~~~G~~G---------------------------DFiTApel 54 (370)
T COG1565 3 LLALIIRALIAQGGPISFSDFMELALYDPEHGYYSS-AVKIGRKG---------------------------DFITAPEL 54 (370)
T ss_pred cHHHHHHHHHhcCCCccHHHHHHHHHcCCCCccccc-chhccccC---------------------------CeeechhH
Confidence 567788888999999999999999999999999999 55999999 69999999
Q ss_pred chHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 109 FKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 109 fsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
|++||++||.|+++.| +.|.++.|||||||+|+||.|||+++++..| ++|+.++|.|||+||.|+++|+++
T Consensus 55 -s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P-~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 55 -SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYP-ELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCH-HHHhcceEEEEecCHHHHHHHHHH
Confidence 9999999999999999 6788999999999999999999999999999 999999999999999999999775
No 2
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=2.8e-21 Score=173.82 Aligned_cols=126 Identities=20% Similarity=0.347 Sum_probs=114.0
Q ss_pred CChhHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcCCccccc
Q 029895 26 CQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTP 105 (186)
Q Consensus 26 ~~~~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts 105 (186)
|+|-|...|..+|...|||++++||.++|-||..|||+... .+|+.| ||+||
T Consensus 31 ~t~~l~k~L~~ki~~sgpi~vaeym~evLtnp~~gyy~~rd-vfg~~g---------------------------dfitS 82 (415)
T KOG2901|consen 31 ETPHLVKHLKSKIKSTGPITVAEYMKEVLTNPKAGYYMNRD-VFGAKG---------------------------DFITS 82 (415)
T ss_pred ccHHHHHHHHhhhhccCCccHHHHHHHHHhCcccceeccHH-Hhhccc---------------------------CccCC
Confidence 77779999999999999999999999999999999998766 899999 69999
Q ss_pred cccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH-HHh
Q 029895 106 VELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT-ERN 181 (186)
Q Consensus 106 ~eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q-~~~ 181 (186)
||+ +++||++|+.|....| +.+.+..++|+|+|+|+||.|+|+.+.+..- ..++.++||.||.|.+.| +.+
T Consensus 83 pei-sq~fgeligvw~~~ew~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~~----~~vs~hLve~S~~ls~lq~~~l 157 (415)
T KOG2901|consen 83 PEI-SQIFGEMIGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKD----EDLSVHLVEVSPALSKLQAQNL 157 (415)
T ss_pred ccH-HHHHHHhhheeEEEehhhhCCccceeEEEeccchhHHHHHHHHHHHHhcC----ceeeEEEEEecHhHHHHhhcce
Confidence 999 9999999999999999 6788899999999999999999999977542 346899999999999999 556
Q ss_pred ccc
Q 029895 182 CWT 184 (186)
Q Consensus 182 ~~~ 184 (186)
|-+
T Consensus 158 ~~~ 160 (415)
T KOG2901|consen 158 CCT 160 (415)
T ss_pred eEe
Confidence 644
No 3
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=99.65 E-value=1.2e-16 Score=135.73 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=56.6
Q ss_pred HHHHHHHHHh---CCCC-CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 116 GIAEAIMRTA---NLSV-PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 116 ~lA~~i~~~~---~~~~-~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
+||+|+++.| +.|. +++|||+|||+|+||.|||+++++..| ++|++++|+|||+||.|+++|++..
T Consensus 1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p-~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSP-EVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTH-HHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhCh-hhhhcceEEEEcCCHHHHHHHHHHh
Confidence 6899999999 3444 699999999999999999999999999 9999999999999999999997643
No 4
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.53 E-value=0.00022 Score=61.63 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=46.7
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.|++..++ ++.+++..+....-+|+|+|||+|.++..+++.. + +++.||+|+.+.+.-++
T Consensus 23 ~fl~~~~i---------~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~----~-------~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 23 NFLIDENI---------LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA----A-------KVTAVEIDRDLAPILAE 82 (272)
T ss_pred CcCCCHHH---------HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC----C-------cEEEEECCHHHHHHHHH
Confidence 48888766 5666666554455689999999999999887752 2 47999999999987554
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
.
T Consensus 83 ~ 83 (272)
T PRK00274 83 T 83 (272)
T ss_pred h
Confidence 4
No 5
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.52 E-value=0.00024 Score=60.93 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=48.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.|++.+++ ++.+++..+....-+|+|+|||+|.++..++.. .. +++.||+++.+.+..++
T Consensus 10 nfl~d~~~---------~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~----~~-------~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 10 HFLIDDRV---------VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR----AK-------KVYAIELDPRLAEFLRD 69 (258)
T ss_pred cccCCHHH---------HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh----CC-------EEEEEECCHHHHHHHHH
Confidence 48887776 666666665555568999999999999998764 22 58999999999988665
Q ss_pred hc
Q 029895 181 NC 182 (186)
Q Consensus 181 ~~ 182 (186)
.+
T Consensus 70 ~~ 71 (258)
T PRK14896 70 DE 71 (258)
T ss_pred Hh
Confidence 44
No 6
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.45 E-value=0.00014 Score=62.40 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=50.6
Q ss_pred CCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 99 EISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 99 ~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+.|++.+++ ++.|++..+......|+|+|||.|.|...+++.. . +.+.||+++.+.+.=
T Consensus 9 gQnFL~~~~~---------~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~--------~v~~vE~d~~~~~~L 68 (262)
T PF00398_consen 9 GQNFLVDPNI---------ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---K--------RVIAVEIDPDLAKHL 68 (262)
T ss_dssp TSSEEEHHHH---------HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---S--------EEEEEESSHHHHHHH
T ss_pred CcCeeCCHHH---------HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---C--------cceeecCcHhHHHHH
Confidence 3458888777 7778777776677899999999999999998875 1 489999999998864
Q ss_pred HH
Q 029895 179 ER 180 (186)
Q Consensus 179 ~~ 180 (186)
++
T Consensus 69 ~~ 70 (262)
T PF00398_consen 69 KE 70 (262)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 7
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.45 E-value=0.00032 Score=55.93 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
++.+++..+....-+|+|+|||+|.++..+++. . .+.+.||+|+.+.+..++++
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~----~-------~~v~~vE~~~~~~~~~~~~~ 55 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER----A-------ARVTAIEIDPRLAPRLREKF 55 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc----C-------CeEEEEECCHHHHHHHHHHh
Confidence 456666665555568999999999999998764 1 25899999999988765543
No 8
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.39 E-value=0.00023 Score=57.09 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=50.2
Q ss_pred ccccccccchHH----HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 101 SWFTPVELFKPW----YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 101 dF~Ts~eifsp~----Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
.|.|++.+|++- =.++|+.++... ..-+|+|+|||+|.++.-+... .| ..+.+.+|+|+...+
T Consensus 3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~----~~-----~~~v~~vDi~~~a~~ 69 (170)
T PF05175_consen 3 EFITHPGVFSPPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKR----GP-----DAKVTAVDINPDALE 69 (170)
T ss_dssp EEEEETTSTTTTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHT----ST-----CEEEEEEESBHHHHH
T ss_pred EEEECCCeeCCCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHh----CC-----CCEEEEEcCCHHHHH
Confidence 489999999843 223555555444 4558999999999999876543 34 245899999999988
Q ss_pred HHHHhc
Q 029895 177 DTERNC 182 (186)
Q Consensus 177 ~Q~~~~ 182 (186)
..++++
T Consensus 70 ~a~~n~ 75 (170)
T PF05175_consen 70 LAKRNA 75 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 9
>PHA03412 putative methyltransferase; Provisional
Probab=97.29 E-value=0.00044 Score=60.31 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=45.9
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+|+||.+| |+.+.. +. ....+|+|+|||+|.++..+....... + ..+.+.||+++...+.-++
T Consensus 32 qFfTP~~i---------Ar~~~i-~~-~~~grVLDlG~GSG~Lalala~~~~~~-~-----~~~V~aVEID~~Al~~Ar~ 94 (241)
T PHA03412 32 AFFTPIGL---------ARDFTI-DA-CTSGSVVDLCAGIGGLSFAMVHMMMYA-K-----PREIVCVELNHTYYKLGKR 94 (241)
T ss_pred ccCCCHHH---------HHHHHH-hc-cCCCEEEEccChHHHHHHHHHHhcccC-C-----CcEEEEEECCHHHHHHHHh
Confidence 69999987 444431 21 125699999999999999987764211 1 2479999999998887554
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
+
T Consensus 95 n 95 (241)
T PHA03412 95 I 95 (241)
T ss_pred h
Confidence 4
No 10
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.27 E-value=0.00059 Score=58.08 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=47.2
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.|++..++ ++.+++..+....-+|+|+|||+|.++..+++.. + .++.||+++.+.+.-++
T Consensus 10 ~fl~d~~i---------~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~----~-------~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 10 NFLIDESV---------IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA----K-------KVTAIEIDPRLAEILRK 69 (253)
T ss_pred ccCCCHHH---------HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC----C-------cEEEEECCHHHHHHHHH
Confidence 47777766 6677776655556689999999999999887753 3 38999999999887544
Q ss_pred hc
Q 029895 181 NC 182 (186)
Q Consensus 181 ~~ 182 (186)
.+
T Consensus 70 ~~ 71 (253)
T TIGR00755 70 LL 71 (253)
T ss_pred Hh
Confidence 43
No 11
>PRK06202 hypothetical protein; Provisional
Probab=97.20 E-value=0.0013 Score=54.81 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=39.2
Q ss_pred CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
...+.+|+|+|||+|.++..+.++.++..| ..+++.||+||.+.+..++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-----~~~v~gvD~s~~~l~~a~~ 106 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGL-----RLEVTAIDPDPRAVAFARA 106 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCC-----CcEEEEEcCCHHHHHHHHh
Confidence 345679999999999999998888765544 2479999999999886433
No 12
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.13 E-value=0.0011 Score=58.61 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=45.5
Q ss_pred CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+.|++.+.+ +..|++..+....-.|+|||||+|.|..-++.. .. +.+.||+++.+.+.-+
T Consensus 16 QnFL~d~~i---------~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----~~-------~V~avEiD~~li~~l~ 75 (294)
T PTZ00338 16 QHILKNPLV---------LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL----AK-------KVIAIEIDPRMVAELK 75 (294)
T ss_pred ccccCCHHH---------HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh----CC-------cEEEEECCHHHHHHHH
Confidence 358777766 566666665445568999999999999887763 22 4799999999998754
Q ss_pred H
Q 029895 180 R 180 (186)
Q Consensus 180 ~ 180 (186)
+
T Consensus 76 ~ 76 (294)
T PTZ00338 76 K 76 (294)
T ss_pred H
Confidence 4
No 13
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.04 E-value=0.0018 Score=56.06 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=52.5
Q ss_pred HHHHHHHH---hhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccc
Q 029895 87 YMKHVDKI---YKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNM 163 (186)
Q Consensus 87 y~~~~~~~---y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l 163 (186)
|+..+++. .+.....|+||.+| ++.|+.+......-+|+|-.||+|.+...+.+++++.. .-....
T Consensus 10 yE~~l~~~~~~~~k~~G~~~TP~~i---------~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~--~~~~~~ 78 (311)
T PF02384_consen 10 YEYFLKKFAKESRKKLGQFYTPREI---------VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKR--NKIKEI 78 (311)
T ss_dssp HHHHHHHHHHCTTTSCGGC---HHH---------HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCH--HHHCCE
T ss_pred HHHHHHHHHHHhccccceeehHHHH---------HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccc--cccccc
Confidence 45555544 23332379999998 55555555555566899999999999999999986432 112346
Q ss_pred eEEEEecCcchHHHHHH
Q 029895 164 TYISVEIQSLTGRDTER 180 (186)
Q Consensus 164 ~Y~iVEiSp~L~~~Q~~ 180 (186)
+++-+|+++......+.
T Consensus 79 ~i~G~ei~~~~~~la~~ 95 (311)
T PF02384_consen 79 NIYGIEIDPEAVALAKL 95 (311)
T ss_dssp EEEEEES-HHHHHHHHH
T ss_pred eeEeecCcHHHHHHHHh
Confidence 78899999998876543
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.02 E-value=0.0013 Score=55.70 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=34.0
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
...+|+|+|||+|.++..++..+. .| ..+++.||+||.+.+.-+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~--~~-----~~~v~gvD~S~~ml~~A~ 99 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIH--HD-----NCKIIAIDNSPAMIERCR 99 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcC--CC-----CCeEEEEeCCHHHHHHHH
Confidence 446899999999999887766542 22 357999999999988743
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.97 E-value=0.0022 Score=46.48 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=34.1
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.+|+|+|||+|.++..+++.. | ..+.+-||+||.+.+..++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~----~-----~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF----P-----GARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH----T-----TSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcC----C-----CCEEEEEeCCHHHHHHHHHHH
Confidence 489999999999999888821 2 246999999999998755543
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.95 E-value=0.0011 Score=48.22 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=28.9
Q ss_pred EEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 133 IYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 133 IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
|+|+|||+|+....+++.+ +..| +.+++.||+|+.+-+.-
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~-----~~~~~gvD~s~~~l~~~ 40 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGP-----SSRVIGVDISPEMLELA 40 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHH
T ss_pred CEEeecCCcHHHHHHHHHh-hhcc-----cceEEEEECCHHHHHHH
Confidence 7999999999999999987 3333 25899999999997754
No 17
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.93 E-value=0.0014 Score=55.22 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+|+-|....++...+-|+|+|||||-+.+.||.+- ..| ....+||.||.....-.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~g--v~~------~~L~~iE~~~dF~~~L~ 90 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRG--VRP------ESLTAIEYSPDFVCHLN 90 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcC--CCc------cceEEEEeCHHHHHHHH
Confidence 56777777777788899999999999999999974 334 25789999999877643
No 18
>PRK08317 hypothetical protein; Provisional
Probab=96.83 E-value=0.0037 Score=50.38 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+-.++.+......+.+|+|+|||+|.++..+.+.+ .| ..+++.||+|+.+.+..++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~---~~-----~~~v~~~d~~~~~~~~a~~ 62 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRV---GP-----EGRVVGIDRSEAMLALAKE 62 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhc---CC-----CcEEEEEeCCHHHHHHHHH
Confidence 33445555555566799999999999999888764 23 2479999999998775433
No 19
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.80 E-value=0.0094 Score=46.57 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
|++.|...+...........|||+|+|.|.|+.-+..+|.+..+ .++.+.||.++.+.+.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~-----~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSP-----NLRVLGIDCNESLVES 68 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCC-----CCeEEEEECCcHHHHH
Confidence 44444444333233466789999999999999999998876533 5689999999998764
No 20
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.80 E-value=0.0048 Score=45.01 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+...+......+|+|+|||+|.++..+++.. | . .+++.||+|+...+.-
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~----~-~----~~v~~vD~s~~~~~~a 59 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLV----P-N----GRVYAIERNPEALRLI 59 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC----C-C----ceEEEEcCCHHHHHHH
Confidence 34444444444599999999999999887642 3 1 4799999999988763
No 21
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.76 E-value=0.00064 Score=48.88 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=27.5
Q ss_pred EEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 134 YEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 134 vEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
+|+|||+|.++..|++.+ | ..+|+.+|+||.+.+
T Consensus 1 LdiGcG~G~~~~~l~~~~----~-----~~~~~~~D~s~~~l~ 34 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL----P-----DARYTGVDISPSMLE 34 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTS
T ss_pred CEeCccChHHHHHHHHhC----C-----CCEEEEEECCHHHHH
Confidence 699999999999999886 2 358999999999884
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.73 E-value=0.0035 Score=48.71 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.1
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+..+|+|+|||+|.++..+++.+ . ...+++.||+|+.+.+.-++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~---~-----~~~~i~gvD~s~~~i~~a~~ 46 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL---N-----PGAKIIGVDISEEMIEYAKK 46 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS---T-----TTSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhc---C-----CCCEEEEEECcHHHHHHhhc
Confidence 45799999999999999888722 2 23479999999999987544
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.70 E-value=0.0047 Score=50.91 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=35.7
Q ss_pred HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
.+.....-+|+|+|||+|.++..+.+.+. | ..+++.||+|+.+.+.-+
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~---~-----~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVG---P-----EGHVIGLDFSENMLSVGR 87 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhC---C-----CCEEEEEECCHHHHHHHH
Confidence 33444456999999999999988777542 2 246999999998877643
No 24
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.003 Score=55.60 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=47.2
Q ss_pred CccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 100 ISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 100 ~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+.|++...+ ...|++..+....-.|+|||||.|.|..-+++-. . +++.||+.+.|++.-+
T Consensus 10 QnFL~d~~v---------~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~----~-------~v~aiEiD~~l~~~L~ 69 (259)
T COG0030 10 QNFLIDKNV---------IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA----A-------RVTAIEIDRRLAEVLK 69 (259)
T ss_pred cccccCHHH---------HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc----C-------eEEEEEeCHHHHHHHH
Confidence 458777655 7777777765556799999999999999888753 2 4799999999999643
No 25
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.66 E-value=0.005 Score=50.89 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.++.+.......-+|+|+|||+|.++.-+.+.+.. .-+++.||+|+.+.+.-++
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~--------~g~V~~iD~~~~~~~~a~~ 115 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIER--------RGKVYTVEIVKELAIYAAQ 115 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHH
Confidence 34445554444568999999999999777665421 1268999999999876443
No 26
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.65 E-value=0.0038 Score=54.73 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
.+.+|+|+|||+|+.+.-+++.+.+ + .+|+.||+|+.+-+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~--~------~~~~~iDiS~~mL~ 102 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQ--P------ARYVPIDISADALK 102 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhcc--C------CeEEEEECCHHHHH
Confidence 3458999999999999999998743 1 36999999998744
No 27
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.60 E-value=0.0053 Score=51.19 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
..+++.......-+|+|+|||+|.++.-+.+.+.. ..+.+.||+++.+.+.-+++
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~--------~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--------SGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHH
Confidence 33444444445569999999999999776665421 23689999999999875544
No 28
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.58 E-value=0.0083 Score=48.35 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
.+...++.........+|+|+|||+|.++..+... .| ..+++.||+|+...+.-+
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~----~~-----~~~v~~vD~s~~~~~~a~ 72 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQ----FP-----SLQVTAIERNPDALRLIK 72 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHH
Confidence 33444445555555669999999999999988754 23 247999999998776543
No 29
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.58 E-value=0.0077 Score=50.54 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.+|+.+++........+|+|+|||+|.++..+. +.. .+++.||+|+.+.+..++.
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~----~~~-------~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWR----ERG-------SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHH----HcC-------CeEEEEECCHHHHHHHHhh
Confidence 3455555555543345689999999999876543 211 3689999999988865443
No 30
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.57 E-value=0.0076 Score=45.79 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=34.0
Q ss_pred HHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 118 AEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 118 A~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
+..+.+... .....+|+|+|||+|.++..+ ++.. .+++.||+|+.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l----~~~~-------~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRAL----AKRG-------FEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHH----HHTT-------SEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHH----HHhC-------CEEEEEECCHHHHhh
Confidence 333433442 456679999999999876665 3322 279999999987754
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.53 E-value=0.0087 Score=50.32 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
++.++..+......+|+|+|||+|.++..+.+. .| ..+++.||+|+.+.+.-++
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~----~~-----~~~v~gvD~s~~~i~~a~~ 73 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVER----WP-----AARITGIDSSPAMLAEARS 73 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHHH
Confidence 445555554455679999999999998766543 23 2478999999998876433
No 32
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.50 E-value=0.0025 Score=52.67 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
|.+|.....|....-. ...+|+|+|||+|.++..+... .| ..+++.||+|+.+.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~----~p-----~~~v~gVD~s~~~i~~a~~~ 83 (202)
T PRK00121 24 PRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKA----NP-----DINFIGIEVHEPGVGKALKK 83 (202)
T ss_pred hhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHH----CC-----CccEEEEEechHHHHHHHHH
Confidence 5555555544433323 4568999999999999988654 23 24699999999988875543
No 33
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.48 E-value=0.01 Score=48.22 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
|.--..+...++........-+|+|+|||+|.++..+... .| ..+.+.||+||.+.+.-+++|
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~----~~-----~~~V~~vD~s~~~~~~a~~n~ 84 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL----CP-----KGRVIAIERDEEVVNLIRRNC 84 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH----CC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 3333444445555555445568999999999998877543 23 236899999999988755544
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.47 E-value=0.023 Score=47.11 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=32.9
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
...+|+|+|||+|.++..+... .| ..+++.||+|+.+.+.-+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~----~~-----~~~V~giD~s~~~l~~A~ 86 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIA----RP-----ELKVTLVDSLGKKIAFLR 86 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHH----CC-----CCeEEEEeCcHHHHHHHH
Confidence 3679999999999988877763 23 247999999998887543
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.46 E-value=0.011 Score=47.99 Aligned_cols=53 Identities=8% Similarity=0.086 Sum_probs=38.0
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
++..+......+|+|+|||+|.++..++... | ...+++.+|+|+.+.+.-++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~----~----~~~~v~~~D~s~~~~~~a~~~ 95 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAV----G----KTGEVVGLDFSEGMLAVGREK 95 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHc----C----CCCeEEEEeCCHHHHHHHHHh
Confidence 3333433345799999999999998887764 2 135799999999887764443
No 36
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.44 E-value=0.0087 Score=49.56 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=38.8
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
..+++.+......+|+|+|||+|.++.-+.+... + ..+++-||+|+.+.+.-+++
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~---~-----~g~V~~vD~~~~~~~~A~~~ 121 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVG---R-----DGLVVSIERIPELAEKAERR 121 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhC---C-----CCEEEEEeCCHHHHHHHHHH
Confidence 3444555555566999999999999986665431 1 23588999999998875443
No 37
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.43 E-value=0.017 Score=48.94 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.+.+|+|+|||+|.++..+... . .+++.||+|+.+.+.-++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~----g-------~~v~~vD~s~~~l~~a~~~ 85 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL----G-------HQVILCDLSAEMIQRAKQA 85 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc----C-------CEEEEEECCHHHHHHHHHH
Confidence 45579999999999988776542 2 2689999999988864443
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.42 E-value=0.0048 Score=51.58 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
...+|+|+|||+|.++..+++.+. .| ..+++.||+|+.+.+.-++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~--~p-----~~~v~gvD~s~~ml~~a~~ 97 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNIN--QP-----NVKIIGIDNSQPMVERCRQ 97 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcC--CC-----CCeEEEEeCCHHHHHHHHH
Confidence 445899999999999988877642 22 3589999999999876544
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.40 E-value=0.016 Score=49.84 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 122 MRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 122 ~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+..+.....+|+|+|||+|.++..+.+.. .| ..+++-||+|+.+.+.-
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~---~~-----~~~V~gvD~S~~ml~~A 114 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKV---GS-----DGKVMGLDFSSEQLAVA 114 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHh---CC-----CCEEEEEECCHHHHHHH
Confidence 333344456799999999999876554432 22 23689999999988763
No 40
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.38 E-value=0.016 Score=47.60 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=40.2
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 102 WFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+++++++ ..++.+........+|+|+|||+|.++. +|..+ .. +.+.||+|+.+.+.-++.
T Consensus 60 ~~~~p~~---------~~~l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~---~~-------~v~~vd~~~~~~~~a~~~ 119 (212)
T PRK00312 60 TISQPYM---------VARMTELLELKPGDRVLEIGTGSGYQAA-VLAHL---VR-------RVFSVERIKTLQWEAKRR 119 (212)
T ss_pred eeCcHHH---------HHHHHHhcCCCCCCEEEEECCCccHHHH-HHHHH---hC-------EEEEEeCCHHHHHHHHHH
Confidence 5666655 3444445555556799999999999986 33332 12 478899999988765443
No 41
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.31 E-value=0.012 Score=49.03 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+.+-+|+|+|||+|.++..+...+ | ..+++-||+|+.+.+.-++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~----~-----~~~v~giDiS~~~l~~A~~ 85 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLL----P-----FKHIYGVEINEYAVEKAKA 85 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHh
Confidence 345589999999999888775542 2 2479999999998887544
No 42
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.26 E-value=0.014 Score=50.09 Aligned_cols=69 Identities=13% Similarity=0.291 Sum_probs=45.7
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 102 WFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
|+.+. .|.| ..+.++..+.+... ....+|+|+|||+|.++..+.+.+.... ..+.+-||+|+.+.+.-.
T Consensus 61 fl~~g-~y~~-l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~------~~~v~giD~s~~~l~~A~ 129 (272)
T PRK11088 61 FLDAG-HYQP-LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEIT------TMQLFGLDISKVAIKYAA 129 (272)
T ss_pred HHHCC-ChHH-HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhccccc------CCeEEEECCCHHHHHHHH
Confidence 55443 3344 33556666655442 2345799999999999999987653211 246899999999887643
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.23 E-value=0.015 Score=47.03 Aligned_cols=55 Identities=16% Similarity=0.435 Sum_probs=37.6
Q ss_pred HHHHHHHHHhC---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 116 GIAEAIMRTAN---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 116 ~lA~~i~~~~~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
.+++.+.+.+. ...+.+|+|+|||+|.+...+++.. | ..+++.||+|+...+..+
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~----~-----~~~~~~~D~~~~~~~~~~ 75 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF----P-----QAEFIALDISAGMLAQAK 75 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC----C-----CCcEEEEeChHHHHHHHH
Confidence 34455544442 2445789999999999877665542 3 235999999998876543
No 44
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.22 E-value=0.015 Score=49.03 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.+..++........+.+|+|+|||+|.++..++..+ | ..+++.+|+|+...+.-+++
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~----~-----~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER----P-----DAEVTAVDISPEALAVARRN 151 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence 4555555544444456789999999999998887664 3 24799999999887764443
No 45
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.17 E-value=0.011 Score=55.54 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=49.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHhC---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTAN---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
.|+||++| ++.++..+....+ .....+|+|.+||+|.+...+++.+..... ..-...+.+.+|+++...+.
T Consensus 5 qfyTP~~i-----a~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~-~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 5 TFFTPPDI-----AKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINY-FKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred ccCCcHHH-----HHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCC-cccceeeeeeechhHHHHHH
Confidence 69999999 3333333332221 114569999999999999999999865332 11123577889999988776
Q ss_pred HH
Q 029895 178 TE 179 (186)
Q Consensus 178 Q~ 179 (186)
-+
T Consensus 79 a~ 80 (524)
T TIGR02987 79 AK 80 (524)
T ss_pred HH
Confidence 43
No 46
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.15 E-value=0.025 Score=46.15 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=35.2
Q ss_pred HHHHHHHHhC----CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 117 IAEAIMRTAN----LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 117 lA~~i~~~~~----~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
...++...+. +..+.+|+|+|||+|.++..+.+. .+ +++.||+|+.+.+.-
T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~----~~-------~v~~iD~s~~~~~~a 83 (224)
T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL----GA-------NVTGIDASEENIEVA 83 (224)
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc----CC-------eEEEEeCCHHHHHHH
Confidence 3445554442 245679999999999988765432 22 489999999886653
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.10 E-value=0.012 Score=47.34 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+.+......+.+|+|+|||+|.++..++... | . ..+++.+|+|+...+.-++
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~----~-~---~~~~~~iD~~~~~~~~~~~ 82 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSA----P-D---RGKVTGVDFSSEMLEVAKK 82 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhc----C-C---CceEEEEECCHHHHHHHHH
Confidence 3344444466799999999999988876654 3 1 2579999999988776433
No 48
>PRK05785 hypothetical protein; Provisional
Probab=96.09 E-value=0.048 Score=46.00 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=31.4
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+.+|+|+|||+|.++..+.+.. ..+++-||+|+.+.+..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~----------~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF----------KYYVVALDYAENMLKMNL 91 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc----------CCEEEEECCCHHHHHHHH
Confidence 5699999999999987765432 136899999999988753
No 49
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.09 E-value=0.016 Score=47.59 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=30.3
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
..+.+|+|+|||+|.++.-+.. .. .+.+.||+|+.+.+.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~----~g-------~~V~~iD~s~~~l~~ 67 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSL----AG-------YDVRAWDHNPASIAS 67 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHH----CC-------CeEEEEECCHHHHHH
Confidence 3456999999999999986654 11 257899999987775
No 50
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.08 E-value=0.043 Score=47.95 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=44.5
Q ss_pred ccccccccchH--HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 101 SWFTPVELFKP--WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 101 dF~Ts~eifsp--~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
+|...+.+|-| ...+.+...+........+.+|+|+|||+|.++..+.... | ..+.+.||+|+...+.-
T Consensus 91 ~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~----~-----~~~v~avDis~~al~~A 161 (284)
T TIGR03533 91 EFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF----P-----EAEVDAVDISPDALAVA 161 (284)
T ss_pred EEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC----C-----CCEEEEEECCHHHHHHH
Confidence 34444444333 2333333333222232334689999999999998887643 3 24689999999988765
Q ss_pred HHh
Q 029895 179 ERN 181 (186)
Q Consensus 179 ~~~ 181 (186)
+++
T Consensus 162 ~~n 164 (284)
T TIGR03533 162 EIN 164 (284)
T ss_pred HHH
Confidence 443
No 51
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.019 Score=48.95 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=48.1
Q ss_pred ccccccccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
++-||+++ |.+|+... +.-..-.|+++|||||.|+...+-. .| .+.+.||+.|...+.
T Consensus 23 QY~Tp~~~---------Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l----Ga------~~V~~vdiD~~a~ei 83 (198)
T COG2263 23 QYRTPAPL---------AAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL----GA------SRVLAVDIDPEALEI 83 (198)
T ss_pred ecCCChHH---------HHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc----CC------cEEEEEecCHHHHHH
Confidence 68999988 66665554 3333447999999999999775432 23 467899999999998
Q ss_pred HHHhcc
Q 029895 178 TERNCW 183 (186)
Q Consensus 178 Q~~~~~ 183 (186)
-+++|.
T Consensus 84 ~r~N~~ 89 (198)
T COG2263 84 ARANAE 89 (198)
T ss_pred HHHHHH
Confidence 888775
No 52
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.02 E-value=0.015 Score=47.60 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=37.3
Q ss_pred HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
..+....-+|+|+|||+|.++..++..+. + ..+++.||+|+...+..+++
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~---~-----~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVG---E-----TGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhC---C-----CCEEEEEECCHHHHHHHHHH
Confidence 33555556999999999999998877642 2 23689999999988864443
No 53
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.99 E-value=0.011 Score=43.24 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=35.0
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.+|+|+|||+|+++..+++.. ..+++.||++|...+..+++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~ 43 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNL 43 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHH
Confidence 589999999999999988774 136899999999998876644
No 54
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.97 E-value=0.02 Score=48.36 Aligned_cols=49 Identities=8% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
++.......+-+|+|+|||+|.++..+... .| ..+++-||+|+.+.+..
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~----~p-----~~~v~gvD~s~~~~~~a 69 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARR----WP-----GAVIEALDSSPEMVAAA 69 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHH----CC-----CCEEEEEECCHHHHHHH
Confidence 334444445579999999999998766553 24 24689999999988764
No 55
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.91 E-value=0.019 Score=51.60 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH-HHHhcccc
Q 029895 118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD-TERNCWTS 185 (186)
Q Consensus 118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~-Q~~~~~~~ 185 (186)
..+|++-.....+-.|+|+|+|||.|...+|+.-+ +.+.+|+.|++... +++..+|.
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-----------kVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-----------KVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-----------eEEEEecCcHHHHHHHHHhcCCC
Confidence 34444444444556899999999999999998742 47899999999874 77776664
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.90 E-value=0.028 Score=46.33 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=31.4
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
....+|+|+|||+|.++.-+.+. . .+++.||+|+.+.+..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~----~-------~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR----G-------AIVKAVDISEQMVQMA 93 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC----C-------CEEEEEECCHHHHHHH
Confidence 45679999999999988876542 2 2578999999988764
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.85 E-value=0.027 Score=46.05 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
....+|+|+|||+|.++..++.. .+ +++.||+|+.+.+.-++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~----~~-------~v~~~D~s~~~i~~a~~ 103 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR----GA-------KVVASDISPQMVEEARE 103 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc----CC-------EEEEEECCHHHHHHHHH
Confidence 45579999999999998776532 22 59999999998776433
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.85 E-value=0.026 Score=45.20 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+-+|+|+|||+|.++..+... .+ +.+.||+||.+.+.-+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~----~~-------~v~~vD~s~~~~~~a~~~ 60 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGK----GK-------CILTTDINPFAVKELREN 60 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhc----CC-------EEEEEECCHHHHHHHHHH
Confidence 3457999999999998876642 22 688999999998864443
No 59
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.80 E-value=0.03 Score=46.24 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+..++..... ..+.+|+|+|||+|.++..++... | ..+++.||+|+...+.-+++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~----~-----~~~v~~iD~~~~~~~~a~~~ 130 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKER----P-----DARVTAVDISPEALAVARKN 130 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence 34444444442 344689999999999998887643 3 24789999999998875443
No 60
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.78 E-value=0.05 Score=47.05 Aligned_cols=131 Identities=8% Similarity=0.086 Sum_probs=69.0
Q ss_pred eeecCC-CChhHHHHHhhhhhCCCceeHHHHHHHhhcCCCCc---cccCCCccccCCCcccccccccChHHHHHHHHHHh
Q 029895 20 LIAVNP-CQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHG---YFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIY 95 (186)
Q Consensus 20 ~~~~~~-~~~~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~G---YY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y 95 (186)
++.+.+ ....++.-+..++...+--++.+|.+....+++.. -.-.. -.++..
T Consensus 16 Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~-lti~~T----------------------- 71 (264)
T smart00138 16 GIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHRGEEELAELLDL-MTTNET----------------------- 71 (264)
T ss_pred CCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCcHHHHHHHHHH-hhcCCC-----------------------
Confidence 344443 44566677777677677678888888777654100 00000 023333
Q ss_pred hhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895 96 KQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 96 ~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
.|+=-++.|.-+-..++ ..+........+++|+++|||+|.-+-.|.-.+.+..+.....+.+++-+|+|+.+-
T Consensus 72 -----~FfR~~~~~~~l~~~vl-p~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L 145 (264)
T smart00138 72 -----RFFRESKHFEALEEKVL-PLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL 145 (264)
T ss_pred -----cccCCcHHHHHHHHHHh-HHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence 25543333232222222 222222223456899999999997444443333333220111246899999999877
Q ss_pred HHHHH
Q 029895 176 RDTER 180 (186)
Q Consensus 176 ~~Q~~ 180 (186)
++-++
T Consensus 146 ~~Ar~ 150 (264)
T smart00138 146 EKARA 150 (264)
T ss_pred HHHHc
Confidence 75433
No 61
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.76 E-value=0.073 Score=47.22 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhcCC-------------ccccccccchH--HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHH
Q 029895 85 KAYMKHVDKIYKQSEI-------------SWFTPVELFKP--WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMD 149 (186)
Q Consensus 85 ~~y~~~~~~~y~~~~~-------------dF~Ts~eifsp--~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~ 149 (186)
..|.+.+.++-+.+++ +|...+.+|-| -..+.+...+........+.+|+|+|||+|.++..+..
T Consensus 74 ~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~ 153 (307)
T PRK11805 74 ARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAY 153 (307)
T ss_pred HHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHH
Confidence 4566777777543332 44444433333 23344444333222322235899999999999988765
Q ss_pred HHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 150 YIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 150 ~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
. .| ..+.+.||+|+...+.-+++
T Consensus 154 ~----~p-----~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 154 A----FP-----DAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred H----CC-----CCEEEEEeCCHHHHHHHHHH
Confidence 4 23 24789999999988875544
No 62
>PHA03411 putative methyltransferase; Provisional
Probab=95.76 E-value=0.014 Score=52.05 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=42.1
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.|+||..+ --.| +. .....-+|+|+|||+|.++..++... + ..+.+.||+||.+.+..++
T Consensus 47 ~FfTP~~i-~~~f-------~~---~~~~~grVLDLGcGsGilsl~la~r~----~-----~~~V~gVDisp~al~~Ar~ 106 (279)
T PHA03411 47 AFFTPEGL-AWDF-------TI---DAHCTGKVLDLCAGIGRLSFCMLHRC----K-----PEKIVCVELNPEFARIGKR 106 (279)
T ss_pred eEcCCHHH-HHHH-------Hh---ccccCCeEEEcCCCCCHHHHHHHHhC----C-----CCEEEEEECCHHHHHHHHH
Confidence 59999988 3222 11 11123489999999999887765531 1 1368999999999987655
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
+
T Consensus 107 n 107 (279)
T PHA03411 107 L 107 (279)
T ss_pred h
Confidence 3
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.73 E-value=0.065 Score=44.25 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.++..........+|+|+|||+|.++..+... . .+++.||+|+...+.-
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~-------~~v~~iD~s~~~~~~a 86 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL----G-------ADVTGIDASEENIEVA 86 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc----C-------CeEEEEcCCHHHHHHH
Confidence 34444444455679999999999998766542 2 2589999999887653
No 64
>PLN02244 tocopherol O-methyltransferase
Probab=95.64 E-value=0.07 Score=47.67 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=32.9
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
....+|+|+|||+|.++..+.... . .+++-||+|+.+.+.-++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~---g-------~~v~gvD~s~~~i~~a~~ 159 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY---G-------ANVKGITLSPVQAARANA 159 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc---C-------CEEEEEECCHHHHHHHHH
Confidence 345689999999999988776532 1 368999999998776433
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.58 E-value=0.12 Score=42.33 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.4
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
..+|+|+|||+|.++..+... .| ..+.+.||+|+.+.+.-
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~----~~-----~~~V~~iD~s~~~~~~a 82 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIA----RP-----ELKLTLLESNHKKVAFL 82 (181)
T ss_pred CCeEEEecCCCCccHHHHHHH----CC-----CCeEEEEeCcHHHHHHH
Confidence 568999999999988877532 23 24689999999876643
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.52 E-value=0.018 Score=47.16 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=31.8
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
...|+|||||+|.++..+... .| + .+++-||+|+.+.+.-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~----~p-~----~~v~gvD~~~~~l~~a 56 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ----NP-D----KNFLGIEIHTPIVLAA 56 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh----CC-C----CCEEEEEeeHHHHHHH
Confidence 458999999999998877753 35 3 4699999999887653
No 67
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.48 E-value=0.049 Score=46.80 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=47.4
Q ss_pred cccccccchHH-HHHHHHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 102 WFTPVELFKPW-YAHGIAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 102 F~Ts~eifsp~-Fg~~lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
|..++..|-|- =.+.+.+.+..... .+.+.+|+|+|||+|.++..+.... | . .+.+.||+||...+..+
T Consensus 57 ~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~----~-~----~~v~~vDis~~al~~A~ 127 (251)
T TIGR03704 57 IAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL----D-G----IELHAADIDPAAVRCAR 127 (251)
T ss_pred EEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC----C-C----CEEEEEECCHHHHHHHH
Confidence 55555554431 23556666655443 2334589999999999998887653 2 1 35789999999988765
Q ss_pred Hhc
Q 029895 180 RNC 182 (186)
Q Consensus 180 ~~~ 182 (186)
+++
T Consensus 128 ~N~ 130 (251)
T TIGR03704 128 RNL 130 (251)
T ss_pred HHH
Confidence 543
No 68
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.47 E-value=0.023 Score=38.23 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=29.0
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+|+|+|||.|.++..++. .+ ..+++.+|+|+...+..+
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~-----~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GP-----GARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CC-----CCEEEEEeCCHHHHHHHH
Confidence 489999999998877766 11 247999999998766533
No 69
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.44 E-value=0.036 Score=49.88 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc-hHHHHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL-TGRDTER 180 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~-L~~~Q~~ 180 (186)
+....|||+|||+|+=.+-+|+.+..... .++|+-||||.. |.+..++
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~-----~~~Y~plDIS~~~L~~a~~~ 123 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKK-----SVDYYALDVSRSELQRTLAE 123 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCC-----CceEEEEECCHHHHHHHHHh
Confidence 34458999999999999999999975432 268999999974 4443443
No 70
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.41 E-value=0.027 Score=38.76 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=27.8
Q ss_pred EEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 134 YEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 134 vEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+|+|||+|..+.-+.+. .. .+++.+|+|+...+.-++
T Consensus 1 LdiG~G~G~~~~~l~~~----~~------~~v~~~D~~~~~~~~~~~ 37 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----GG------ASVTGIDISEEMLEQARK 37 (95)
T ss_dssp EEET-TTSHHHHHHHHT----TT------CEEEEEES-HHHHHHHHH
T ss_pred CEecCcCCHHHHHHHhc----cC------CEEEEEeCCHHHHHHHHh
Confidence 69999999999988776 11 379999999997776444
No 71
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.39 E-value=0.055 Score=46.57 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=44.2
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+|+.|-.+ .+ ...++..++.....+|+|+|||+|.++..+... . ..+++.||+|+.+.+..++
T Consensus 31 ~~~~~gg~-~~------~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~----~------~~~v~giD~s~~~~~~a~~ 93 (263)
T PTZ00098 31 DYISSGGI-EA------TTKILSDIELNENSKVLDIGSGLGGGCKYINEK----Y------GAHVHGVDICEKMVNIAKL 93 (263)
T ss_pred CCCCCCch-HH------HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhh----c------CCEEEEEECCHHHHHHHHH
Confidence 36666655 22 455666666666679999999999988766431 1 2479999999998776544
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=95.39 E-value=0.045 Score=45.55 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.++..+... +....-+|+|+|||+|.++..+... .. .+.+.||+|+...+..++++
T Consensus 24 ~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~----~~------~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 24 LLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAA----GA------GSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred HHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHc----CC------CeEEEEECCHHHHHHHHHHH
Confidence 344444332 2233458999999999998765532 11 26899999998887654443
No 73
>PRK04457 spermidine synthase; Provisional
Probab=95.37 E-value=0.057 Score=46.73 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=36.6
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
+.+-+|+|||+|+|+++.-++... | ..+.+.||++|.+.+.-++.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~----p-----~~~v~~VEidp~vi~~A~~~f 110 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL----P-----DTRQTAVEINPQVIAVARNHF 110 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC----C-----CCeEEEEECCHHHHHHHHHHc
Confidence 455689999999999998887653 4 247899999999999765543
No 74
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.36 E-value=0.038 Score=45.37 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+.+|+|+|||+|.++.-+.+. . .+++.||+|+.+.+.-
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~----g-------~~V~gvD~S~~~i~~a 68 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN----G-------FDVTAWDKNPMSIANL 68 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC----C-------CEEEEEeCCHHHHHHH
Confidence 3468999999999998766531 2 2689999999877653
No 75
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.35 E-value=0.051 Score=47.12 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=33.6
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+|+|+|||+|.++..+.... | ..+++.||+|+...+..+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~----~-----~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF----P-----NAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHH
Confidence 589999999999999887653 2 24689999999888765554
No 76
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.15 E-value=0.014 Score=49.88 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+.+++..+...+.+|+|+|||||.++..+.+.+. | +.+.+.||+|+.+-+.-+
T Consensus 37 ~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~---~-----~~~v~~vD~s~~ML~~a~ 89 (233)
T PF01209_consen 37 RKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG---P-----NGKVVGVDISPGMLEVAR 89 (233)
T ss_dssp SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHH
T ss_pred HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC---C-----ccEEEEecCCHHHHHHHH
Confidence 3444444455566999999999999888765432 2 346899999999988743
No 77
>PRK00811 spermidine synthase; Provisional
Probab=95.02 E-value=0.079 Score=46.30 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.-.|-++++.-.+-.. +.+-+|++||+|+|.+++.+|.+ + ...+.+.||+++.+.+.-++.+
T Consensus 59 e~~Y~e~l~h~~~~~~--~~p~~VL~iG~G~G~~~~~~l~~-----~----~~~~V~~VEid~~vv~~a~~~~ 120 (283)
T PRK00811 59 EFIYHEMMTHVPLFAH--PNPKRVLIIGGGDGGTLREVLKH-----P----SVEKITLVEIDERVVEVCRKYL 120 (283)
T ss_pred hhhHHHHhhhHHHhhC--CCCCEEEEEecCchHHHHHHHcC-----C----CCCEEEEEeCCHHHHHHHHHHh
Confidence 3456666664443333 44568999999999999999853 2 1236899999999998766543
No 78
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.00 E-value=0.042 Score=46.44 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+++.++.....+|+|||+|+|.++.-+-.-.... -+.+-||+.+.|.+.-+++
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~--------g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPV--------GRVVSVERDPELAERARRN 116 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTT--------EEEEEEESBHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCcc--------ceEEEECccHHHHHHHHHH
Confidence 34444544555699999999999998666544221 1467899999999875444
No 79
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.00 E-value=0.067 Score=46.14 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
...|-++++.--+-. .+.+.+|+|+|+|+|.+++.++.+. + ..+++.||+++.+.+.-++.
T Consensus 55 e~~y~e~l~~~~l~~--~~~p~~VL~iG~G~G~~~~~ll~~~----~-----~~~v~~veid~~vi~~a~~~ 115 (270)
T TIGR00417 55 EFIYHEMIAHVPLFT--HPNPKHVLVIGGGDGGVLREVLKHK----S-----VEKATLVDIDEKVIELSKKF 115 (270)
T ss_pred HHHHHHHhhhhHhhc--CCCCCEEEEEcCCchHHHHHHHhCC----C-----cceEEEEeCCHHHHHHHHHH
Confidence 345666665432222 3344599999999999998887642 1 23699999999998765443
No 80
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.94 E-value=0.081 Score=41.49 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHh-hhcCCccccccccchHHHHH-HHHHHHHHHh----CCCCCceEEEecCCchhHHH
Q 029895 90 HVDKIY-KQSEISWFTPVELFKPWYAH-GIAEAIMRTA----NLSVPLKIYEIGGGSGTCAK 145 (186)
Q Consensus 90 ~~~~~y-~~~~~dF~Ts~eifsp~Fg~-~lA~~i~~~~----~~~~~l~IvEiGaG~GtLA~ 145 (186)
.+.+.| +..-..|-.+++=.+-+|=. +||.|++..| ....+...|++|||+|-|..
T Consensus 13 ~LK~kYa~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~ 74 (112)
T PF07757_consen 13 RLKEKYARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVY 74 (112)
T ss_pred HHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHH
Confidence 344445 34444576555543556653 6999999999 23356789999999998754
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=94.91 E-value=0.082 Score=41.53 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
...+|+|+|||+|.++..+++. . .+++.+|+|+...+.-
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~-------~~v~~~D~s~~~~~~a 61 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----G-------KKVVGVDINPYAVECA 61 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----c-------ceEEEEECCHHHHHHH
Confidence 3458999999999998888764 1 2588999999877653
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.82 E-value=0.075 Score=50.34 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=33.7
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.+|+|+|||+|.++..++..+ | ..+.+.||+|+...+..+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~----p-----~~~v~avDis~~al~~A~~N 181 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL----P-----NANVIATDISLDAIEVAKSN 181 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC----C-----CCeEEEEECCHHHHHHHHHH
Confidence 4589999999999999877643 3 24789999999888765544
No 83
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.81 E-value=0.076 Score=48.89 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.+.|-+-+||.-==..=++.+++.+.....-+|+|+|||+|.++.-+... .| . .+.+.||+|+...+..++
T Consensus 200 ~~~~~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~----~P-~----~~V~~vD~S~~Av~~A~~ 270 (378)
T PRK15001 200 TIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK----NP-Q----AKVVFVDESPMAVASSRL 270 (378)
T ss_pred EEEecCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh----CC-C----CEEEEEECCHHHHHHHHH
Confidence 47777777775100111445555553333348999999999998765543 45 2 479999999988776554
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
+
T Consensus 271 N 271 (378)
T PRK15001 271 N 271 (378)
T ss_pred H
Confidence 3
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.80 E-value=0.068 Score=43.14 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895 127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT 174 (186)
Q Consensus 127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L 174 (186)
....-+|+|+|||+|.++..+.+.... ..+.+.||+||.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~--------~~~v~~vDis~~~ 69 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGG--------KGRVIAVDLQPMK 69 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCC--------CceEEEEeccccc
Confidence 344568999999999998888765421 2357888998853
No 85
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.71 E-value=0.11 Score=46.71 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
...+|+|+|||+|.++..+.. .. .+++.||+|+.+.+.-+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~----~g-------~~V~GID~s~~~i~~Ar 170 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR----MG-------ATVTGVDAVDKNVKIAR 170 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH----cC-------CEEEEEeCCHHHHHHHH
Confidence 345899999999998875542 12 26899999999887643
No 86
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.2 Score=48.85 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH-H--HHhccc
Q 029895 112 WYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD-T--ERNCWT 184 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~-Q--~~~~~~ 184 (186)
.|+++|-..++... ......+|+=+|||+|-|...+|+..++.. .+++.++||.+|.---. | +..||.
T Consensus 347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~-----RkVklyavEKNPNAivtL~~~n~~~W~ 420 (649)
T KOG0822|consen 347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD-----RKVKLYAVEKNPNAIVTLQNRNFECWD 420 (649)
T ss_pred HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc-----CceEEEEEecCcchhhhhhhhchhhhc
Confidence 57777777777765 122367899999999999999999987653 57899999999975543 4 234564
No 87
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.62 E-value=0.14 Score=48.11 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCC----CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 112 WYAHGIAEAIMRTANLS----VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~----~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
.|.++|...+....... ....|+++|||+|-|..-.+++.+... .+.+.+.||.||.-..
T Consensus 165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~-----~a~~VyAVEkn~~A~~ 228 (448)
T PF05185_consen 165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG-----GAVKVYAVEKNPNAVV 228 (448)
T ss_dssp HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC-----CESEEEEEESSTHHHH
T ss_pred HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC-----CCeEEEEEcCCHhHHH
Confidence 58888888887777432 357899999999999999998876543 3467899999996443
No 88
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.57 E-value=0.087 Score=47.66 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhC---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhcc
Q 029895 115 HGIAEAIMRTAN---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCW 183 (186)
Q Consensus 115 ~~lA~~i~~~~~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~~ 183 (186)
|-+.+++++..+ ...+..|+|+|+|+|.++..+|.-|. +++.+.||.|+.-...-.++|.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~---------~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP---------QCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC---------CceEEEEeccHHHHHHHHHHHH
Confidence 556666666652 34455899999999999999998763 4679999999988887777663
No 89
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.51 E-value=0.087 Score=47.40 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
+++..+....-+|+|+|||+|.++.-+.+.... .-..+.||+|+.+.+.-
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~--------~g~VvgVDis~~~l~~A 121 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIA 121 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCC--------CCEEEEEECCHHHHHHH
Confidence 444444444568999999999999887664311 12478899999987653
No 90
>PRK04148 hypothetical protein; Provisional
Probab=94.34 E-value=0.18 Score=40.34 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchh-HHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGT-CAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~Gt-LA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.||.|+.+........+|+|+|+|+|. +|. .|. +.. .+.+.||+||...+.-++
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~-~L~---~~G-------~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAK-KLK---ESG-------FDVIVIDINEKAVEKAKK 57 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHH-HHH---HCC-------CEEEEEECCHHHHHHHHH
Confidence 477888777744445789999999996 554 333 322 268999999997765433
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.24 E-value=0.13 Score=46.39 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=45.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.+.+.|.+|++-==..-.+.+++.+.....-+|+|+|||+|.++..++.. .| ..+.+.||+|+...+..++
T Consensus 168 ~i~~~pgvFs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~----~p-----~~~v~~vDis~~Al~~A~~ 238 (342)
T PRK09489 168 TVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARH----SP-----KIRLTLSDVSAAALESSRA 238 (342)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHH
Confidence 46677777665110111244444443333448999999999998876653 34 2468999999987776544
No 92
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=94.19 E-value=0.16 Score=45.52 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=40.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
++.|++|+ .+ ...-..++...+....-+|+|+|||+|.++..++.. .+ -.++-||+|+.+..+
T Consensus 97 ~~~~~~e~-~s---~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~----g~------~~v~GiDpS~~ml~q 159 (314)
T TIGR00452 97 GIKIDSEW-RS---DIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH----GA------KSLVGIDPTVLFLCQ 159 (314)
T ss_pred cccCCHHH-HH---HHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc----CC------CEEEEEcCCHHHHHH
Confidence 57777777 32 222222333334344569999999999998766542 33 157899999976543
No 93
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.09 E-value=0.15 Score=47.02 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.-.+.+.+.+++........+|+|+|||+|+++..+... . .+.+.||+|+...+.-+++
T Consensus 280 ~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~----~-------~~V~gvD~s~~al~~A~~n 338 (443)
T PRK13168 280 QVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ----A-------AEVVGVEGVEAMVERAREN 338 (443)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh----C-------CEEEEEeCCHHHHHHHHHH
Confidence 335677777777665444568999999999998876543 1 1578999999988765443
No 94
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.00 E-value=0.43 Score=41.49 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=37.4
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+...+.+|+|+|||||.+|..+.+... +.+.+.||+|+.+-+.-++-
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g---------~g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVG---------TGEVVGLDISESMLEVAREK 94 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC---------CceEEEEECCHHHHHHHHHH
Confidence 444667999999999999998877643 35789999999998875443
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.95 E-value=0.23 Score=44.02 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=42.8
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
-|++|..+ .|-. |+.++...+....-.|+|+|||+|+++.... ... .+.+-+|+|+.+.+..++
T Consensus 159 ~~~~~~~l-~~~l----a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa----~~~-------~~v~g~Di~~~~~~~a~~ 222 (329)
T TIGR01177 159 PFFKPGSM-DPKL----ARAMVNLARVTEGDRVLDPFCGTGGFLIEAG----LMG-------AKVIGCDIDWKMVAGARI 222 (329)
T ss_pred CccCCCCC-CHHH----HHHHHHHhCCCCcCEEEECCCCCCHHHHHHH----HhC-------CeEEEEcCCHHHHHHHHH
Confidence 47888877 7755 5555554444445589999999999864321 112 257889999988775433
No 96
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=93.89 E-value=0.14 Score=45.87 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=40.2
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
++....++++++||||-+|..||++...+.- -...+.++.||||.+-..
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~---~~~~~V~v~Dinp~mL~v 145 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFG---DRESKVTVLDINPHMLAV 145 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccC---CCCceEEEEeCCHHHHHH
Confidence 4566689999999999999999999977532 234689999999998764
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.87 E-value=0.16 Score=44.69 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+.|..++......... +|+|+|+|||.+|..+.... | + .+.+.+|+||.--+.-+++
T Consensus 96 Te~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~----~-~----~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 96 TELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEG----P-D----AEVIAVDISPDALALAREN 153 (280)
T ss_pred hHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhC----c-C----CeEEEEECCHHHHHHHHHH
Confidence 35666665533322222 89999999999999887764 3 2 4789999999766654444
No 98
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.74 E-value=0.21 Score=43.98 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.+.+|+|+|||+|+++..+... . .+.+.||+|+...+.-++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~----~-------~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP----G-------MQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc----C-------CEEEEEeCCHHHHHHHHHHH
Confidence 3468999999999998776541 1 25899999999888755443
No 99
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.74 E-value=0.25 Score=40.02 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHHH------hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 115 HGIAEAIMRT------ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 115 ~~lA~~i~~~------~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
..+|+|+.+. .....+.+|+|+|||+|..+.-+.... . ..+.++=|.++.
T Consensus 25 ~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~---~------~~~Vv~TD~~~~ 80 (173)
T PF10294_consen 25 LVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF---G------AARVVLTDYNEV 80 (173)
T ss_dssp HHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT----T-------SEEEEEE-S-H
T ss_pred HHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc---C------CceEEEeccchh
Confidence 4567777773 234556799999999997665554441 1 236788888883
No 100
>PRK01581 speE spermidine synthase; Validated
Probab=93.72 E-value=0.23 Score=46.05 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
-+|=|+|+.-.+... +.+.+|+++|+|+|..++.+|.+ .+ ..+.+.||++|.+.+.-++
T Consensus 134 ~iYHE~Lvhp~m~~h--~~PkrVLIIGgGdG~tlrelLk~----~~-----v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 134 QIYHEALVHPIMSKV--IDPKRVLILGGGDGLALREVLKY----ET-----VLHVDLVDLDGSMINMARN 192 (374)
T ss_pred HHHHHHHHHHHHHhC--CCCCEEEEECCCHHHHHHHHHhc----CC-----CCeEEEEeCCHHHHHHHHh
Confidence 368888887665544 44569999999999988888764 11 2368999999998887654
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.69 E-value=0.21 Score=43.37 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcch
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLT 174 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L 174 (186)
+.+.......-+|+|+|||+|+++..++.. .| . ++.+++|..+.+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~----~p-~----~~~~~~D~~~~~ 185 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKH----FP-E----LDSTILNLPGAI 185 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHH----CC-C----CEEEEEecHHHH
Confidence 333334445569999999999999888776 35 3 468888974333
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.69 E-value=0.1 Score=45.80 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=34.2
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
..+..-+|+|+|||+|.++.-+..- .+ ..+.+.||+++.+.++-++
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r----~~-----~a~I~~VEiq~~~a~~A~~ 86 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQR----TE-----KAKIVGVEIQEEAAEMAQR 86 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhcc----CC-----CCcEEEEEeCHHHHHHHHH
Confidence 3444679999999999988754332 12 2579999999999998544
No 103
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.27 Score=42.25 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=43.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.++..|.+ +|+ |++.++....-+|+|||+|+|..|.= |..+-. +.+.||+.+.|.+.-++
T Consensus 53 qtis~P~~--------vA~-m~~~L~~~~g~~VLEIGtGsGY~aAv-la~l~~----------~V~siEr~~~L~~~A~~ 112 (209)
T COG2518 53 QTISAPHM--------VAR-MLQLLELKPGDRVLEIGTGSGYQAAV-LARLVG----------RVVSIERIEELAEQARR 112 (209)
T ss_pred ceecCcHH--------HHH-HHHHhCCCCCCeEEEECCCchHHHHH-HHHHhC----------eEEEEEEcHHHHHHHHH
Confidence 47877766 344 44555556667999999999998864 443321 47889999999987654
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
+
T Consensus 113 ~ 113 (209)
T COG2518 113 N 113 (209)
T ss_pred H
Confidence 3
No 104
>PRK04266 fibrillarin; Provisional
Probab=93.58 E-value=0.18 Score=43.01 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=31.4
Q ss_pred hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
......-+|+|+|||+|.++..+.+... .-+.+.||+|+.+.+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~---------~g~V~avD~~~~ml~ 110 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE---------EGVVYAVEFAPRPMR 110 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC---------CCeEEEEECCHHHHH
Confidence 4434456999999999999887766542 125788999996555
No 105
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.55 E-value=0.15 Score=44.21 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
+-+|+|+|||+|.++.-+.. .. .+++.||+|+...+..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~----~g-------~~V~avD~s~~ai~~~ 158 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL----LG-------FDVTAVDINQQSLENL 158 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH----CC-------CEEEEEECCHHHHHHH
Confidence 34899999999999876644 12 3689999999877653
No 106
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.53 E-value=0.2 Score=46.15 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=34.5
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
+++........+|+|+|||+|.++..+.... ..+++-||+|+...+..++
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF----------DVHVVGIDLSVNMISFALE 307 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHH
Confidence 3333333445689999999999887654432 2368999999988776443
No 107
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.48 E-value=0.23 Score=45.41 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=35.9
Q ss_pred HHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 122 MRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 122 ~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
++..+....-+|+|||||+|.++.-+.... .++.+.||+|+...+.-++.+
T Consensus 160 ~~~l~l~~g~rVLDIGcG~G~~a~~la~~~----------g~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 160 CRKLQLKPGMRVLDIGCGWGGLARYAAEHY----------GVSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHh
Confidence 333444445699999999999987664421 136899999999888754443
No 108
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.45 E-value=0.2 Score=46.05 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+++.+......+|+|+|||+|.++..+.+. .. +++.||+|+.+.+..
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~----~~-------~v~giD~s~~~l~~a 75 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKK----AG-------QVIALDFIESVIKKN 75 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhh----CC-------EEEEEeCCHHHHHHH
Confidence 3334443334458999999999999987764 22 578999999988753
No 109
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=0.22 Score=44.03 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
-+|+...+....-+|+|.|.|+|.|+.-+++++.... +.+.+|+-+...+.-+++
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G--------~v~tyE~r~d~~k~A~~N 138 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEG--------HVTTYEIREDFAKTAREN 138 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCc--------eEEEEEecHHHHHHHHHH
Confidence 3555555666677999999999999999999875443 467788888888876554
No 110
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.26 E-value=0.15 Score=44.45 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=34.9
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.+-+|+|+|+|.||-+-...+.+. .. .+|++||.|+.+.+.-+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~-------~~~~~vd~s~~~~~l~~~ 76 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SL-------KEYTCVDRSPEMLELAKR 76 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-Cc-------eeeeeecCCHHHHHHHHH
Confidence 456999999999998887777775 21 379999999999886444
No 111
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.19 E-value=0.27 Score=41.79 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=30.7
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
...+|+|+|||+|.++..+. +..+ .+++.||+||...+.-+++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~----~~g~------~~v~giDis~~~l~~A~~n 161 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAA----KLGA------KKVLAVDIDPQAVEAAREN 161 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHH----HcCC------CeEEEEECCHHHHHHHHHH
Confidence 45689999999998876432 2222 2488999999988764443
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=93.11 E-value=0.17 Score=46.98 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=30.4
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
.....++|||||+|.++..+... .| + ..++-||+++.+.++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~----~P-~----~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKN----NP-N----KLFIGIEIHTPSIEQ 161 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHh----CC-C----CCEEEEECCHHHHHH
Confidence 34458999999999887655443 45 3 479999999887665
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.09 E-value=0.23 Score=46.69 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.+...+..... ...+|+|+|||+|.++..+... .| ..+.+.||+|+...+..+++
T Consensus 239 E~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~----~p-----~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 239 EHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALE----RP-----DAFVRASDISPPALETARKN 294 (423)
T ss_pred HHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHh----CC-----CCEEEEEECCHHHHHHHHHH
Confidence 556666655443 2348999999999999877643 23 24689999999998876554
No 114
>PLN02366 spermidine synthase
Probab=93.08 E-value=0.33 Score=43.44 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
-.|-++|+.--+.. .+.+-+|++||+|.|.+++.++++ | . -.+.++||+++.+.+.-++.
T Consensus 75 ~~Y~e~l~h~~l~~--~~~pkrVLiIGgG~G~~~rellk~-----~-~---v~~V~~VEiD~~Vi~~ar~~ 134 (308)
T PLN02366 75 CAYQEMITHLPLCS--IPNPKKVLVVGGGDGGVLREIARH-----S-S---VEQIDICEIDKMVIDVSKKF 134 (308)
T ss_pred HHHHHHHHHHHHhh--CCCCCeEEEEcCCccHHHHHHHhC-----C-C---CCeEEEEECCHHHHHHHHHh
Confidence 35667666644433 345679999999999999888764 3 1 23689999999887765543
No 115
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.05 E-value=0.31 Score=41.26 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=38.4
Q ss_pred hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhcc
Q 029895 125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNCW 183 (186)
Q Consensus 125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~~ 183 (186)
+.+.+.-+++|||||+|+++-.+. . ..| +.+.+-||.++.-.+.-+++|.
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a-~---~~p-----~~~v~AIe~~~~a~~~~~~N~~ 79 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWA-L---AGP-----SGRVIAIERDEEALELIERNAA 79 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHH-H---hCC-----CceEEEEecCHHHHHHHHHHHH
Confidence 344444599999999999998877 2 234 4678999999998888777763
No 116
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.99 E-value=0.31 Score=42.77 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=32.0
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
..+..+||+|||+|.|+.-|-..+....+ ....|++||...
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~----~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKP----SNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhccc----CCccEEEEecCc
Confidence 45568999999999999999998866422 335799999844
No 117
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.72 E-value=0.15 Score=42.98 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccc
Q 029895 84 RKAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNM 163 (186)
Q Consensus 84 ~~~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l 163 (186)
+.+..+++.+.=.+.. .+ -...+ +|.=|+.|. .+++.. .+-+|+|||.+.|.-+.-+.+.+.+ ..
T Consensus 7 ~~~~l~~l~~~t~~~~-~~-~~~~i-~~~~g~lL~-~l~~~~---~~k~vLEIGt~~GySal~la~~l~~--------~g 71 (205)
T PF01596_consen 7 EPELLKELREFTRENQ-GL-PQMSI-SPETGQLLQ-MLVRLT---RPKRVLEIGTFTGYSALWLAEALPE--------DG 71 (205)
T ss_dssp STHHHHHHHHHHHCTT-TT-GGGSH-HHHHHHHHH-HHHHHH---T-SEEEEESTTTSHHHHHHHHTSTT--------TS
T ss_pred CCHHHHHHHHHHHhCc-CC-CCCcc-CHHHHHHHH-HHHHhc---CCceEEEeccccccHHHHHHHhhcc--------cc
Confidence 3455555555444432 11 11224 566666554 333333 3558999999999999988887632 34
Q ss_pred eEEEEecCcchHHHHHHh
Q 029895 164 TYISVEIQSLTGRDTERN 181 (186)
Q Consensus 164 ~Y~iVEiSp~L~~~Q~~~ 181 (186)
+++.||++|...+..+++
T Consensus 72 ~i~tiE~~~~~~~~A~~~ 89 (205)
T PF01596_consen 72 KITTIEIDPERAEIAREN 89 (205)
T ss_dssp EEEEEESSHHHHHHHHHH
T ss_pred eEEEecCcHHHHHHHHHH
Confidence 799999999998876554
No 118
>PRK06922 hypothetical protein; Provisional
Probab=92.69 E-value=0.56 Score=46.52 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+.+|+|+|||+|.++..+... .| ..+++.||+|+.+.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~----~P-----~~kVtGIDIS~~MLe~A 458 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEE----TE-----DKRIYGIDISENVIDTL 458 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh----CC-----CCEEEEEECCHHHHHHH
Confidence 3569999999999987655443 33 35899999999977654
No 119
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=92.69 E-value=0.33 Score=43.51 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=30.2
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
...+|+|+|||+|.++..+.+. . .+.+.||+|+.+.+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~----g-------~~V~gvD~S~~ml~~ 181 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE----G-------AIVSASDISAAMVAE 181 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC----C-------CEEEEEECCHHHHHH
Confidence 3569999999999998777652 2 258999999988665
No 120
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=92.57 E-value=0.14 Score=46.53 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
...+|+|+|||+|.++..+++.. + . .+++.||+|+.+.+.-
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~----~-~----~~VtgVD~S~~mL~~A 153 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV----D-A----KNVTILDQSPHQLAKA 153 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC----C-C----CEEEEEECCHHHHHHH
Confidence 35699999999999988776542 2 2 3699999999986653
No 121
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=92.52 E-value=0.22 Score=40.33 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.2
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
..+|+|+|||+|.++..+.+. .. .+.+-||+|+...+.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~----~~------~~~~giD~s~~~i~~ 51 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE----KQ------VRGYGIEIDQDGVLA 51 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc----cC------CcEEEEeCCHHHHHH
Confidence 348999999999987655432 11 245789999987665
No 122
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.43 E-value=0.34 Score=44.32 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
-.+.+...+.+.......-+|+|+|||+|+++.-+.+. .. +.+.||+|+...+.-++++
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~----~~-------~V~~vE~~~~av~~a~~n~ 334 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ----AK-------SVVGIEVVPESVEKAQQNA 334 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh----CC-------EEEEEEcCHHHHHHHHHHH
Confidence 34445555555555444468999999999999876543 21 4789999999988765543
No 123
>PRK03612 spermidine synthase; Provisional
Probab=92.41 E-value=0.36 Score=45.87 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.|.+.++.-... ..+++.+|+++|+|+|.+++.++++ | . ..+.+.||++|.+.+..++
T Consensus 282 ~y~e~l~~~~l~--~~~~~~rVL~IG~G~G~~~~~ll~~-----~-~---v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 282 RYHEALVHPAMA--ASARPRRVLVLGGGDGLALREVLKY-----P-D---VEQVTLVDLDPAMTELART 339 (521)
T ss_pred HHHHHHHHHHHh--hCCCCCeEEEEcCCccHHHHHHHhC-----C-C---cCeEEEEECCHHHHHHHHh
Confidence 456665532222 2345678999999999999888763 2 1 1368999999999998766
No 124
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=92.12 E-value=0.27 Score=41.04 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=27.3
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
..-+|+|+|||+|.++.-+++... + ..+++.||+|+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~---~-----~~~V~aVDi~~ 86 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIG---D-----KGRVIACDILP 86 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC---C-----CceEEEEeccc
Confidence 345899999999999888876541 1 23688899887
No 125
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=92.06 E-value=0.39 Score=41.84 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.5
Q ss_pred HHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 120 AIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 120 ~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
+|+...+....-+|+|.|.|+|.|+..+++.+.... +.+-.|......+.-++++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G--------~v~t~E~~~~~~~~A~~n~ 85 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTG--------HVYTYEFREDRAEKARKNF 85 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTS--------EEEEEESSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCe--------EEEccccCHHHHHHHHHHH
Confidence 444455555556999999999999999999985433 4677899988888755543
No 126
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=92.02 E-value=0.26 Score=41.94 Aligned_cols=45 Identities=11% Similarity=-0.084 Sum_probs=34.5
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+-+|+|+|+|+|.-+..+...+.. ..+.+.||+++...+.-+++
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~--------~g~v~tiD~d~~~~~~A~~n 112 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE--------DGRITAIDIDKEAYEVGLEF 112 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHH
Confidence 3558999999999988887776522 23689999999888765544
No 127
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=91.87 E-value=0.72 Score=41.67 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+.+..++.+..+... -+|+|+|||+|+++.-+.+. .. +.+.||+|+...+..+++
T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~----~~-------~v~~vE~~~~av~~a~~n 238 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN----FR-------RVLATEIAKPSVNAAQYN 238 (353)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh----CC-------EEEEEECCHHHHHHHHHH
Confidence 3555666666554222 36999999999999844333 21 589999999998876554
No 128
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=91.81 E-value=0.7 Score=38.54 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 122 MRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 122 ~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
......+..-+|||+|+|+|.++..|+.. +| +++.++.|.-
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~----~P-----~l~~~v~Dlp 133 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARA----YP-----NLRATVFDLP 133 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHH----ST-----TSEEEEEE-H
T ss_pred hccccccCccEEEeccCcchHHHHHHHHH----CC-----CCcceeeccH
Confidence 33334444458999999999999988654 46 3578888873
No 129
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=91.76 E-value=0.28 Score=42.81 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=31.0
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.-+|+|+|||+|.++..++. ... -+.+.||+||...+.-+++
T Consensus 160 g~~VLDvGcGsG~lai~aa~----~g~------~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALK----LGA------AKVVGIDIDPLAVESARKN 201 (288)
T ss_pred CCEEEEeCCChhHHHHHHHH----cCC------CeEEEEECCHHHHHHHHHH
Confidence 46899999999999865432 121 2689999999887765444
No 130
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.68 E-value=0.49 Score=40.23 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=27.8
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.-+|+++|||+|+|.. +|++.. +++-.-||+++......
T Consensus 14 gsrVLDLGCGdG~LL~----~L~~~k------~v~g~GvEid~~~v~~c 52 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLA----YLKDEK------QVDGYGVEIDPDNVAAC 52 (193)
T ss_pred CCEEEecCCCchHHHH----HHHHhc------CCeEEEEecCHHHHHHH
Confidence 3599999999999864 444421 35678899998765443
No 131
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=91.65 E-value=0.31 Score=41.39 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
...-+|+|+|||+|.++.-+.... .+ ..+.+.||+|+.+.+.-++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~---g~-----~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRV---GP-----TGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh---CC-----CCEEEEECCCHHHHHHHHH
Confidence 345599999999998776544332 22 2368999999998876443
No 132
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=91.58 E-value=0.81 Score=40.16 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=44.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHh-------CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTA-------NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~-------~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
++.-+.+-|..+|-+-.+.+=.+.+ ++..+..++|+|||+|++-. ..| .-..++.+.||.||.
T Consensus 41 ~~~~p~~~ft~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfk--------fy~--~~p~~svt~lDpn~~ 110 (252)
T KOG4300|consen 41 DLLIPNSNFTSIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFK--------FYP--WKPINSVTCLDPNEK 110 (252)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcc--------ccc--CCCCceEEEeCCcHH
Confidence 3444444555666655555533322 56777889999999998621 111 113578999999999
Q ss_pred hHHHH
Q 029895 174 TGRDT 178 (186)
Q Consensus 174 L~~~Q 178 (186)
+.+.-
T Consensus 111 mee~~ 115 (252)
T KOG4300|consen 111 MEEIA 115 (252)
T ss_pred HHHHH
Confidence 98864
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=91.30 E-value=0.6 Score=42.36 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=31.6
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.-+|+|+|||+|+++.-+... . .+.+.||+|+...+..+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~----~-------~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP----D-------TQLTGIEIESEAIACAQQS 274 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc----C-------CeEEEEECCHHHHHHHHHH
Confidence 358999999999999777631 1 2588999999988865554
No 134
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=91.13 E-value=0.62 Score=38.70 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=27.8
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.++|||||+|.++..... .+| + ..|+-||++.....+.
T Consensus 20 l~lEIG~G~G~~l~~~A~----~~P-d----~n~iGiE~~~~~v~~a 57 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK----RNP-D----INFIGIEIRKKRVAKA 57 (195)
T ss_dssp EEEEET-TTSHHHHHHHH----HST-T----SEEEEEES-HHHHHHH
T ss_pred eEEEecCCCCHHHHHHHH----HCC-C----CCEEEEecchHHHHHH
Confidence 899999999998776544 456 4 5799999998776653
No 135
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=91.10 E-value=0.5 Score=39.59 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=31.4
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
..+|+|+|||+|.++...|.. .. .+.+.||+++...+.-+++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr---~a-------~~V~~vE~~~~a~~~a~~N 95 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR---YA-------AGATLLEMDRAVAQQLIKN 95 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc---CC-------CEEEEEECCHHHHHHHHHH
Confidence 348999999999999754432 11 2689999999998865554
No 136
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.99 E-value=0.62 Score=42.04 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=48.5
Q ss_pred ccccccccchH---HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 101 SWFTPVELFKP---WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 101 dF~Ts~eifsp---~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
.|.|.|-+||- -+| ++-+++.+.....-+|+|+|||.|.|+..+... .| ..+.++||+|..--+.
T Consensus 130 ~~~t~pGVFS~~~lD~G---S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~----~p-----~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 130 TFKTLPGVFSRDKLDKG---SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK----SP-----QAKLTLVDVNARAVES 197 (300)
T ss_pred EEEeCCCCCcCCCcChH---HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh----CC-----CCeEEEEecCHHHHHH
Confidence 59999999885 444 455566664333449999999999999877664 34 3578999999876655
Q ss_pred HH
Q 029895 178 TE 179 (186)
Q Consensus 178 Q~ 179 (186)
-+
T Consensus 198 ar 199 (300)
T COG2813 198 AR 199 (300)
T ss_pred HH
Confidence 33
No 137
>PLN02823 spermine synthase
Probab=90.86 E-value=0.86 Score=41.32 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.|-|+++.-.+... +.+.+|+.||+|.|.+++.+|.+ .+ ..+.+.||++|.+.+.-++.
T Consensus 88 ~YhE~l~h~~l~~~--~~pk~VLiiGgG~G~~~re~l~~----~~-----~~~v~~VEiD~~vv~lar~~ 146 (336)
T PLN02823 88 VYHESLVHPALLHH--PNPKTVFIMGGGEGSTAREVLRH----KT-----VEKVVMCDIDQEVVDFCRKH 146 (336)
T ss_pred HHHHHHHhHHHhhC--CCCCEEEEECCCchHHHHHHHhC----CC-----CCeEEEEECCHHHHHHHHHh
Confidence 57777765544443 45568999999999999888864 12 13689999999999886654
No 138
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=90.70 E-value=0.45 Score=42.44 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
-...+|+|+|||+|.++..++.. .+ . .++-||+|+.+..
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~----g~-~-----~V~GiD~S~~~l~ 159 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA----GA-K-----LVVGIDPSQLFLC 159 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc----CC-C-----EEEEEcCCHHHHH
Confidence 34569999999999999866553 34 2 4788999997654
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=90.47 E-value=0.6 Score=43.00 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+....-+|+|+|||+|..+..+++.. + . .+.+.+|+|+...+..+++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~----~-~----~~v~a~D~s~~~l~~~~~n 287 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELA----P-Q----AQVVALDIDAQRLERVREN 287 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHc----C-C----CEEEEEeCCHHHHHHHHHH
Confidence 44445689999999999998887754 2 1 3689999999887765443
No 140
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=90.06 E-value=0.73 Score=42.35 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=53.9
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
-||.|...|..-.+-++++.+.+.-+...+++|+|+-||+|.++.-.+.... . .-+.+.+|+||...+.-++
T Consensus 16 vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~--g------a~~Vv~nD~n~~Av~~i~~ 87 (374)
T TIGR00308 16 VFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE--G------VREVFANDINPKAVESIKN 87 (374)
T ss_pred cccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC--C------CCEEEEEeCCHHHHHHHHH
Confidence 4999999988888777777665544333358999999999999977665421 1 1258999999998887655
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
+
T Consensus 88 N 88 (374)
T TIGR00308 88 N 88 (374)
T ss_pred H
Confidence 4
No 141
>PTZ00146 fibrillarin; Provisional
Probab=90.05 E-value=0.62 Score=41.82 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=29.8
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
.-+|+|+|||+|+++..+.+.+-... +.+.||+|+.+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G--------~VyAVD~s~r~~ 170 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEG--------VVYAVEFSHRSG 170 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCC--------EEEEEECcHHHH
Confidence 35899999999999999998763222 477899998643
No 142
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=89.81 E-value=0.96 Score=38.92 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
+.+....++|||+|.|++...+ .+.+| + +.|+-||+...-...
T Consensus 45 ~~~~~pi~lEIGfG~G~~l~~~----A~~nP-~----~nfiGiEi~~~~v~~ 87 (227)
T COG0220 45 GNNNAPIVLEIGFGMGEFLVEM----AKKNP-E----KNFLGIEIRVPGVAK 87 (227)
T ss_pred CCCCCcEEEEECCCCCHHHHHH----HHHCC-C----CCEEEEEEehHHHHH
Confidence 3344468999999999986654 44577 4 479999998765443
No 143
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.57 E-value=0.62 Score=41.37 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.-.|-++++.-....+ +++-+|+-||+|.|..++-+|++.- . -+.++|||.|...+..++..
T Consensus 59 e~~yhEml~h~~~~ah--~~pk~VLiiGgGdG~tlRevlkh~~---v------e~i~~VEID~~Vi~~ar~~l 120 (282)
T COG0421 59 EFIYHEMLAHVPLLAH--PNPKRVLIIGGGDGGTLREVLKHLP---V------ERITMVEIDPAVIELARKYL 120 (282)
T ss_pred hHHHHHHHHhchhhhC--CCCCeEEEECCCccHHHHHHHhcCC---c------ceEEEEEcCHHHHHHHHHhc
Confidence 3455555555444444 3335999999999999999998852 1 26899999999999987644
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.00 E-value=0.97 Score=41.73 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=34.8
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.....-+|+|+|||+|..+..+++.+. + ..+.+.||+|+...+.-++
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~---~-----~~~v~avDi~~~~l~~~~~ 293 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLK---N-----TGKVVALDIHEHKLKLIEE 293 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC---C-----CCEEEEEeCCHHHHHHHHH
Confidence 333445899999999999998888652 2 1368999999987665443
No 145
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=88.98 E-value=1.7 Score=39.26 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.+.+.+++.+..... +-+++|++||+|+++..+.+. .. +.+.||+|+...+..+++
T Consensus 192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~----~~-------~v~~vE~~~~ai~~a~~N 247 (362)
T PRK05031 192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN----FR-------RVLATEISKPSVAAAQYN 247 (362)
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh----CC-------EEEEEECCHHHHHHHHHH
Confidence 456666666655322 246999999999999854433 22 579999999998876554
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=88.67 E-value=1.1 Score=41.28 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 123 RTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 123 ~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
..+++...-+|+|+|||+|..+..+++.+. ..+.+.+|+|+...+..+++
T Consensus 232 ~~L~~~~g~~VLDlcag~G~kt~~la~~~~---------~~~v~a~D~~~~~l~~~~~n 281 (426)
T TIGR00563 232 TWLAPQNEETILDACAAPGGKTTHILELAP---------QAQVVALDIHEHRLKRVYEN 281 (426)
T ss_pred HHhCCCCCCeEEEeCCCccHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHH
Confidence 334544556999999999999998887652 13688999999887764443
No 147
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=88.46 E-value=2.5 Score=35.61 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=44.8
Q ss_pred HHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEe
Q 029895 90 HVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVE 169 (186)
Q Consensus 90 ~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVE 169 (186)
.+.++|.+.+.-|-. .+. +|.+-+ ++... ..+...+|+++|||.|..|.-+. +.. .+.+-||
T Consensus 2 ~Wd~ry~~~~~~w~~-~~p-~~~l~~----~~~~l-~~~~~~rvLd~GCG~G~da~~LA----~~G-------~~V~gvD 63 (213)
T TIGR03840 2 FWHERWQEGQIGFHQ-SEV-NPLLVK----HWPAL-GLPAGARVFVPLCGKSLDLAWLA----EQG-------HRVLGVE 63 (213)
T ss_pred hHHHHHhcCCCCCcc-CCC-CHHHHH----HHHhh-CCCCCCeEEEeCCCchhHHHHHH----hCC-------CeEEEEe
Confidence 367888887755532 223 555544 22221 11344699999999999887553 333 2589999
Q ss_pred cCcchHHH
Q 029895 170 IQSLTGRD 177 (186)
Q Consensus 170 iSp~L~~~ 177 (186)
+||.-.+.
T Consensus 64 ~S~~Ai~~ 71 (213)
T TIGR03840 64 LSEIAVEQ 71 (213)
T ss_pred CCHHHHHH
Confidence 99997775
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=88.28 E-value=2.6 Score=35.57 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=45.5
Q ss_pred HHHHHhhhcCCcc-ccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEE
Q 029895 90 HVDKIYKQSEISW-FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISV 168 (186)
Q Consensus 90 ~~~~~y~~~~~dF-~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iV 168 (186)
.++++|.+.+.-| .+ +. .|.+-+ ++-+. ..+...+|+++|||.|..|.-+.+ .. .+.+-|
T Consensus 5 ~Wd~rw~~~~~~~~~~--~p-~~~L~~----~~~~~-~~~~~~rvL~~gCG~G~da~~LA~----~G-------~~V~av 65 (218)
T PRK13255 5 FWHEKWAENQIGFHQE--EV-NPLLQK----YWPAL-ALPAGSRVLVPLCGKSLDMLWLAE----QG-------HEVLGV 65 (218)
T ss_pred HHHHHHcCCCCCCCCC--CC-CHHHHH----HHHhh-CCCCCCeEEEeCCCChHhHHHHHh----CC-------CeEEEE
Confidence 4788898887556 34 34 566533 33222 223446999999999998876543 22 368999
Q ss_pred ecCcchHHH
Q 029895 169 EIQSLTGRD 177 (186)
Q Consensus 169 EiSp~L~~~ 177 (186)
|+||.-.++
T Consensus 66 D~s~~Ai~~ 74 (218)
T PRK13255 66 ELSELAVEQ 74 (218)
T ss_pred ccCHHHHHH
Confidence 999985554
No 149
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.15 E-value=1.7 Score=37.30 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=43.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
|+|-|.|= +=..=.+|=+-..++-+. .+...+|||||+|-...-+..-+. | +..|...||||.-.+-..+
T Consensus 17 dVYEPaED-TFlLlDaLekd~~eL~~~-~~~i~lEIG~GSGvvstfL~~~i~---~-----~~~~latDiNp~A~~~Tl~ 86 (209)
T KOG3191|consen 17 DVYEPAED-TFLLLDALEKDAAELKGH-NPEICLEIGCGSGVVSTFLASVIG---P-----QALYLATDINPEALEATLE 86 (209)
T ss_pred hccCccch-hhHHHHHHHHHHHHHhhc-CceeEEEecCCcchHHHHHHHhcC---C-----CceEEEecCCHHHHHHHHH
Confidence 68888886 333323333333222222 256789999999986554433332 2 4569999999988876544
No 150
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=87.70 E-value=1.4 Score=40.75 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=34.9
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.....-+|+|+|||+|..+.-+.+.+... -+.+.||+|+...+.-++
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~--------~~V~avD~s~~~l~~~~~ 293 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNR--------GQITAVDRYPQKLEKIRS 293 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCC--------cEEEEEECCHHHHHHHHH
Confidence 33344689999999999998887765321 257899999998876443
No 151
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=87.51 E-value=1.5 Score=37.75 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=34.7
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.....-+|+|+|||+|..+..+.+.+.+. -..+.+|+|+...+.-++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~--------g~v~a~D~~~~~l~~~~~ 114 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNE--------GAIVANEFSKSRTKVLIA 114 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCC--------CEEEEEcCCHHHHHHHHH
Confidence 33344589999999999999888765322 247889999988775433
No 152
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=87.44 E-value=1.4 Score=37.90 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
...|-++|+...+... +.+-+|+-||+|.|..++.++.+- + -.+.++||++|...+..++.
T Consensus 59 e~~y~e~l~h~~~~~~--~~p~~VLiiGgG~G~~~~ell~~~----~-----~~~i~~VEiD~~Vv~~a~~~ 119 (246)
T PF01564_consen 59 EFIYHEMLVHPPLLLH--PNPKRVLIIGGGDGGTARELLKHP----P-----VESITVVEIDPEVVELARKY 119 (246)
T ss_dssp HHHHHHHHHHHHHHHS--SST-EEEEEESTTSHHHHHHTTST----T------SEEEEEES-HHHHHHHHHH
T ss_pred hHHHHHHHhhhHhhcC--CCcCceEEEcCCChhhhhhhhhcC----C-----cceEEEEecChHHHHHHHHh
Confidence 3577788776555554 466799999999999999887652 1 13689999999998887654
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=87.02 E-value=1.5 Score=36.14 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=31.2
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
..+++|++||+|.++...+..- . -+.+.||+|+...+.-++
T Consensus 50 g~~vLDLfaGsG~lglea~srg----a------~~v~~vE~~~~a~~~~~~ 90 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRG----A------KVAFLEEDDRKANQTLKE 90 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCC----C------CEEEEEeCCHHHHHHHHH
Confidence 4589999999999998776642 1 157999999988876444
No 154
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=86.86 E-value=1.5 Score=40.43 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=34.2
Q ss_pred hCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 125 ANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 125 ~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
++....-+|+|+|||+|..+..+...... +-+.+.+|+|+...+.-
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~rl~~~ 293 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGD--------QGEIWAVDRSASRLKKL 293 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCC--------CceEEEEcCCHHHHHHH
Confidence 34444568999999999999988775432 12588999999877653
No 155
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=86.61 E-value=1.1 Score=37.76 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 112 WYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
.|||..-..+..++ +....-.+||+|+|.|......--.. ... .-+-||+.|.+.+..+
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~--~~~-------~~~GIEi~~~~~~~a~ 83 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT--GCK-------KSVGIEILPELHDLAE 83 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH----S-------EEEEEE-SHHHHHHHH
T ss_pred ceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc--CCc-------EEEEEEechHHHHHHH
Confidence 45555555554444 54556699999999999865443222 111 3688999999987643
No 156
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=86.40 E-value=1.6 Score=40.45 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=35.9
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+....-+|+|+|||+|..+..++..+... -+.+.+|+|+...+.-+++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~--------g~V~a~Dis~~rl~~~~~n 281 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQ--------GKILAVDISREKIQLVEKH 281 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCC--------CEEEEEECCHHHHHHHHHH
Confidence 44445689999999999999988765322 2588999999887764443
No 157
>PTZ00357 methyltransferase; Provisional
Probab=86.25 E-value=3 Score=42.38 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=33.3
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
+.|+=+|||+|=|....|+..++.. -+++.+.||.||.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~g-----vkVrIyAVEKNPp 739 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALG-----VRLRIFAIEKNLP 739 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcC-----CcEEEEEEecCcc
Confidence 6799999999999999999998764 2678999999966
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=86.22 E-value=1.5 Score=37.69 Aligned_cols=56 Identities=21% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.++.......++-+|+|||.+.|.=+.-++..+.. +-+++.||++|...+.-+++
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~--------~g~l~tiE~~~e~~~~A~~n 103 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPD--------DGRLTTIERDEERAEIAREN 103 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC--------CCeEEEEeCCHHHHHHHHHH
Confidence 444444444456779999999999999888887643 33799999999999986554
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=86.10 E-value=2.5 Score=36.31 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc-chHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS-LTGR 176 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp-~L~~ 176 (186)
...+++|+|||+|.++.-+++. .. -+.+.||+|+ .|..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~----ga------~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK----GA------KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc----CC------CEEEEEeCCHHHHHH
Confidence 4458999999999999866653 11 2578999999 4544
No 160
>PRK00536 speE spermidine synthase; Provisional
Probab=85.99 E-value=2.3 Score=37.46 Aligned_cols=57 Identities=11% Similarity=-0.108 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
=+|-|+|+.--+-.+ +.+-+|+=||+|.|-.++-||.+ | + +.++|||.+...+..++
T Consensus 56 fiYHEmLvHppl~~h--~~pk~VLIiGGGDGg~~REvLkh-----~-~-----~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 56 HIESELLAHMGGCTK--KELKEVLIVDGFDLELAHQLFKY-----D-T-----HVDFVQADEKILDSFIS 112 (262)
T ss_pred hhHHHHHHHHHHhhC--CCCCeEEEEcCCchHHHHHHHCc-----C-C-----eeEEEECCHHHHHHHHH
Confidence 367777776555444 55668999999999999999988 3 2 68999999988887665
No 161
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=85.89 E-value=1.5 Score=38.67 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=34.7
Q ss_pred HhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 124 TANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 124 ~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
......+..||++|||.|...+-+.+-+ | . -..+-||.||.|-+.-
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~Rw----P-~----A~i~GiDsS~~Mla~A 70 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRW----P-D----AVITGIDSSPAMLAKA 70 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhC----C-C----CeEeeccCCHHHHHHH
Confidence 3344456799999999999887766553 5 2 3678899999998864
No 162
>PLN02476 O-methyltransferase
Probab=85.76 E-value=1.5 Score=38.92 Aligned_cols=47 Identities=15% Similarity=0.014 Sum_probs=35.9
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
..+-+|+|||.|+|.-+.-+...+.+. -..+-||.+|...+..+++.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~--------G~V~TiE~d~e~~~~Ar~n~ 163 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPES--------GCLVACERDSNSLEVAKRYY 163 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCC--------CEEEEEECCHHHHHHHHHHH
Confidence 345699999999999999888776321 24888999998887765543
No 163
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=85.08 E-value=4.1 Score=37.45 Aligned_cols=69 Identities=9% Similarity=-0.092 Sum_probs=47.1
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
-||.|..-+.......+++++... ....+|+|++||+|.++.-+..... ..+.+.+|+||...+.-++
T Consensus 32 vFyqp~~~~nrdl~~~v~~~~~~~---~~~~~vLDl~aGsG~~~l~~a~~~~---------~~~V~a~Din~~Av~~a~~ 99 (382)
T PRK04338 32 VFYNPRMELNRDISVLVLRAFGPK---LPRESVLDALSASGIRGIRYALETG---------VEKVTLNDINPDAVELIKK 99 (382)
T ss_pred eeeCccccchhhHHHHHHHHHHhh---cCCCEEEECCCcccHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHH
Confidence 488888765666555555554221 0245899999999999977655421 1257999999998886554
Q ss_pred h
Q 029895 181 N 181 (186)
Q Consensus 181 ~ 181 (186)
+
T Consensus 100 N 100 (382)
T PRK04338 100 N 100 (382)
T ss_pred H
Confidence 4
No 164
>PLN03075 nicotianamine synthase; Provisional
Probab=85.05 E-value=2.6 Score=37.84 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.7
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.+-+|+|||||.|-+..-++.. ...| +.+++-||+||...+..++++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa--~~~p-----~~~~~giD~d~~ai~~Ar~~~ 169 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAK--HHLP-----TTSFHNFDIDPSANDVARRLV 169 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHH--hcCC-----CCEEEEEeCCHHHHHHHHHHh
Confidence 5678999999999777766653 2233 468999999999998876654
No 165
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=84.65 E-value=2 Score=37.69 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
+....-+|+|||||-|.++.-+.... .++.+-|.+|+.-.+.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~----------g~~v~gitlS~~Q~~~ 100 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY----------GCHVTGITLSEEQAEY 100 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHH
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc----------CcEEEEEECCHHHHHH
Confidence 44455699999999999998776543 2468889999877764
No 166
>PLN02672 methionine S-methyltransferase
Probab=84.61 E-value=1.4 Score=45.87 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=34.1
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.+|+|+|||+|.++..+.... | ..+.+.||+||...+.-+++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~----~-----~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW----L-----PSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC----C-----CCEEEEEECCHHHHHHHHHHH
Confidence 489999999999999887653 2 136899999999988765543
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=84.55 E-value=2.4 Score=38.38 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=70.6
Q ss_pred HHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHhhhcC-----Ccccccccc-chHHHHHHHHHHH
Q 029895 48 DFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSE-----ISWFTPVEL-FKPWYAHGIAEAI 121 (186)
Q Consensus 48 dFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~-----~dF~Ts~ei-fsp~Fg~~lA~~i 121 (186)
||=+.+.-+|+.-=|.... +-|. ..|||++=..-.++.+.+-+.|=-.+ .+++.|| | -.=-|=.-|+..+
T Consensus 27 df~~L~~~~p~l~~~v~~~-~~g~--~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPp-iP~R~~Yi~~l~dll 102 (321)
T PRK11727 27 DFAALIQSHPELKPFVILN-PYGE--QSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPP-IPGRADYIHHLADLL 102 (321)
T ss_pred CHHHHHHhChhHHHHhccC-CCCC--eeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCC-CCcHHHHHHHHHHHh
Confidence 6777777777665555433 2233 35899888888888777666664443 3556665 3 0111212222222
Q ss_pred HHHh-C---CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 122 MRTA-N---LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 122 ~~~~-~---~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
...- + .....+++|||+|+|-++.-+... .+ ..+++.+|+++.-.+..+++
T Consensus 103 ~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~----~~-----~~~~~atDId~~Al~~A~~N 157 (321)
T PRK11727 103 AEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH----EY-----GWRFVGSDIDPQALASAQAI 157 (321)
T ss_pred cccccccCCCCCCceEEEecCCccHHHHHHHhh----CC-----CCEEEEEeCCHHHHHHHHHH
Confidence 1110 0 124579999999999766655332 12 24789999999888775544
No 168
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=84.14 E-value=3.1 Score=35.07 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
....+.+++++|||.|++|. ||.+.. .+.+.||+|+.-.++
T Consensus 27 ~~~~~g~~LDlgcG~GRNal----yLA~~G-------~~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNAL----YLASQG-------FDVTAVDISPVALEK 67 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHH----HHHHTT--------EEEEEESSHHHHHH
T ss_pred hhcCCCcEEEcCCCCcHHHH----HHHHCC-------CeEEEEECCHHHHHH
Confidence 33456799999999999986 555544 257889999965554
No 169
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=84.03 E-value=4.7 Score=38.19 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=48.1
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
+||||.++ .+-|+++..+...-+|++--||+|.+.....++++++. .++.++..|+++......
T Consensus 167 EfyTP~~v---------~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 167 EFYTPREV---------SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLA 230 (489)
T ss_pred ccCChHHH---------HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHH
Confidence 69999998 44455555432233899999999999999999998753 257899999987665543
No 170
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=82.83 E-value=5 Score=35.83 Aligned_cols=91 Identities=16% Similarity=0.288 Sum_probs=45.9
Q ss_pred ccChHHHHHHHHHHhhhcC--------Cccccccc--------cchH--HHH---HHHHHHHHHHh-C-CCCCceEEEec
Q 029895 81 LQGRKAYMKHVDKIYKQSE--------ISWFTPVE--------LFKP--WYA---HGIAEAIMRTA-N-LSVPLKIYEIG 137 (186)
Q Consensus 81 l~~~~~y~~~~~~~y~~~~--------~dF~Ts~e--------ifsp--~Fg---~~lA~~i~~~~-~-~~~~l~IvEiG 137 (186)
..-..+|...+.+.|+... +.|.+.++ | -| -|| +--.+-+++.+ . ....-+|+|+|
T Consensus 91 ~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~i-dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG 169 (295)
T PF06325_consen 91 EIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEI-DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVG 169 (295)
T ss_dssp E--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEE-STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES
T ss_pred EeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEE-CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 3445678888888887553 34544443 2 22 444 11222222222 0 12224999999
Q ss_pred CCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 138 GGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 138 aG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
||||.||-.-+.. .. -+.+-||+.|.-.+.-+++.
T Consensus 170 ~GSGILaiaA~kl----GA------~~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 170 CGSGILAIAAAKL----GA------KKVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp -TTSHHHHHHHHT----TB------SEEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHc----CC------CeEEEecCCHHHHHHHHHHH
Confidence 9999998654332 21 25788999998776655543
No 171
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=82.43 E-value=4.5 Score=39.90 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCC-CCCceEEEecCCchhHHHHHHHHHHHhCccccc---------------------------------
Q 029895 115 HGIAEAIMRTANL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY--------------------------------- 160 (186)
Q Consensus 115 ~~lA~~i~~~~~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y--------------------------------- 160 (186)
+.||..|+...+- .....+++-+||+||+.---.....+..| -+.
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~p-g~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAP-GLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCC-CccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 6778888776543 33568999999999998554433221111 111
Q ss_pred -ccceEEEEecCcchHHHHHHhc
Q 029895 161 -NNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 161 -~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
...+++-+|+++...+.-+++.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~ 276 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNA 276 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHH
Confidence 1236899999999988766553
No 172
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.45 E-value=5.3 Score=38.65 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCCCceEEEecCCchhHHHHHHHHHHH---hCcccccccceEEEEecCcchH
Q 029895 127 LSVPLKIYEIGGGSGTCAKGVMDYIML---NAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~---~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
....++|.|+|=|+|.+....++.+++ ..|...-.+++|+.||.-|-.+
T Consensus 55 ~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~ 106 (662)
T PRK01747 55 PRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTR 106 (662)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCH
Confidence 345699999999999999999999853 3331233579999999976433
No 173
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=80.22 E-value=2.3 Score=38.07 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.+..+++|||.+|+|...|-..+- + ...+-|||.|.|.++-++.|
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~---~------r~iLGvDID~~LI~~Ark~~ 102 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG---P------RRILGVDIDPVLIQRARKEI 102 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc---c------ceeeEeeccHHHHHHHHHhc
Confidence 345799999999999999987762 2 24788999999999887765
No 174
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=79.43 E-value=2.1 Score=37.96 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=40.0
Q ss_pred cccccccchHHHHHHHHHHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 102 WFTPVELFKPWYAHGIAEAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 102 F~Ts~eifsp~Fg~~lA~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
+-+.+-| --+=.++..|.+.-.. ..+.+--|++||||+|.-+.-+.+. . ..++-|||||.+-+.
T Consensus 23 Yt~nsri-~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-------G----h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 23 YTQNSRI-VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-------G----HQWIGVDISPSMLEQ 87 (270)
T ss_pred cccccee-eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-------C----ceEEeecCCHHHHHH
Confidence 3444444 4444555555554433 2234778999999999765433321 1 248999999999876
No 175
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.29 E-value=4.6 Score=36.08 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
.-|.+-|+...+.-....|+|||+|.|-..++||++=.. +...||+.+++..
T Consensus 36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~----------RL~vVE~D~RFip 87 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVA----------RLLVVEKDTRFIP 87 (326)
T ss_pred hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchh----------heeeeeeccccCh
Confidence 345566666555556678999999999999999986211 4677888887765
No 176
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=76.73 E-value=8.5 Score=34.51 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 121 IMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 121 i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
+++.++....-+|+|||||-|.|+.-.... | .++.+-|.+|+.-.+.
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~---------y-~v~V~GvTlS~~Q~~~ 110 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEE---------Y-GVTVVGVTLSEEQLAY 110 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHH---------c-CCEEEEeeCCHHHHHH
Confidence 334445666679999999999997543322 2 3478899999987765
No 177
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.59 E-value=3.7 Score=36.71 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
--+++++|||||-++..|-+-.. +.+-||||.++-++-.+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~-----------~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMAD-----------RLTGVDISENMLAKAHE 165 (287)
T ss_pred cceeeecccCcCcccHhHHHHHh-----------hccCCchhHHHHHHHHh
Confidence 34899999999998877655432 24568999888877543
No 178
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=75.66 E-value=3.9 Score=36.99 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=26.9
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
...+|+|+|||.|- |+..|.+..- -.|+.||||+.=.+.
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~i-------~~~vg~Dis~~si~e 100 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAKI-------KHYVGIDISEESIEE 100 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT--------SEEEEEES-HHHHHH
T ss_pred CCCeEEEecCCCch---hHHHHHhcCC-------CEEEEEeCCHHHHHH
Confidence 66899999999984 7788876432 269999999865543
No 179
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=75.20 E-value=2.1 Score=37.15 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCCchhHH
Q 029895 114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCA 144 (186)
Q Consensus 114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA 144 (186)
|..+|||+...-..-...+|+|+|+|+|--+
T Consensus 64 G~~lAR~i~~~PetVrgkrVLd~gagsgLva 94 (218)
T COG3897 64 GQVLARYIDDHPETVRGKRVLDLGAGSGLVA 94 (218)
T ss_pred hHHHHHHHhcCccccccceeeecccccChHH
Confidence 5667888877665556679999999999654
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=75.10 E-value=5 Score=34.89 Aligned_cols=60 Identities=8% Similarity=-0.121 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 110 KPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+|--|+.|...+. . ..+-+|+|||.+.|.=+.-+...+.. .-+.+.||++|...+.-+++
T Consensus 64 ~~~~g~lL~~l~~-~---~~ak~iLEiGT~~GySal~la~al~~--------~g~v~tiE~~~~~~~~Ar~~ 123 (247)
T PLN02589 64 SADEGQFLNMLLK-L---INAKNTMEIGVYTGYSLLATALALPE--------DGKILAMDINRENYELGLPV 123 (247)
T ss_pred CHHHHHHHHHHHH-H---hCCCEEEEEeChhhHHHHHHHhhCCC--------CCEEEEEeCCHHHHHHHHHH
Confidence 5666766654442 2 23458999999999988877766522 24689999999887765443
No 181
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=73.95 E-value=5.2 Score=33.56 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=37.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
++-|+|+| +.+.-.-|.++++--+.-.|.++|||.|.|.-.. ..+.+-..+-+||.|.--+.-
T Consensus 25 QY~T~p~i-----AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~----------sm~~~e~vlGfDIdpeALEIf 87 (185)
T KOG3420|consen 25 QYPTRPHI-----AASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAF----------SMPKNESVLGFDIDPEALEIF 87 (185)
T ss_pred hCCCcHHH-----HHHHHHHHHhhhccccCcchhhhcCchhhhHHHh----------hcCCCceEEeeecCHHHHHHH
Confidence 57899988 2222222333335445568999999999887211 122333566677777655543
No 182
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=73.71 E-value=3 Score=35.73 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=29.1
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
+.--+++|+|||+|.|...+.... -+.+.+|+|+.--++-++.|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC-----------d~LlavDis~~Al~~Ar~Rl 85 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC-----------DRLLAVDISPRALARARERL 85 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE-----------EEEEEEES-HHHHHHHHHHT
T ss_pred cccceeEecCCCccHHHHHHHHhh-----------CceEEEeCCHHHHHHHHHhc
Confidence 333589999999999998764332 15889999998777654443
No 183
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=73.66 E-value=8.5 Score=34.83 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
.|.-|.+.-+ ...++|+|+|+-+=++-+||.++.... -++|+-||+|...-+
T Consensus 69 ~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~~-----~~ryvpiDv~a~iL~ 120 (321)
T COG4301 69 RAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRGS-----LLRYVPIDVSASILR 120 (321)
T ss_pred HHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcCC-----cceeeeecccHHHHH
Confidence 3444444433 678999999999999999999976542 258999999987544
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=72.94 E-value=5.7 Score=37.78 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=29.0
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
....++|||||+|.++.... ..+| + ..|+-||++..-..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A----~~~p-~----~~~iGiE~~~~~~~ 385 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQA----KMNP-D----ALFIGVEVYLNGVA 385 (506)
T ss_pred CCceEEEECCCchHHHHHHH----HhCC-C----CCEEEEEeeHHHHH
Confidence 35689999999999876543 3467 4 46999999986443
No 185
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=72.91 E-value=4 Score=36.32 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=31.4
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
+|+|+|||.|..--.||..-.+ .++.....+-||.-.+.-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n-------~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN-------NRLKVYACDFSPRAIELV 113 (264)
T ss_pred hheeeccCCCcccchhhhcCCC-------CCeEEEEcCCChHHHHHH
Confidence 8999999999999888877422 246778889998877753
No 186
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.45 E-value=7.2 Score=36.73 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=27.0
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
...||+|||+|.|+.=|-+++.+. .+|- +++||.+.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~---~~~l---~vlvdR~s 219 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQ---NVYL---FVLVDRKS 219 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccc---cEEE---EEeecccc
Confidence 689999999999999998888654 2332 55676544
No 187
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=70.63 E-value=8.6 Score=34.43 Aligned_cols=54 Identities=6% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
.+.+++.+.....-.++|.++|.|..+.-||+.+.. ..+++-+|++|...+.-+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~--------~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGP--------KGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCC--------CCEEEEEcCCHHHHHHHH
Confidence 344455554334458999999999999999987521 246888999998887643
No 188
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=70.46 E-value=23 Score=32.34 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
+--+.|...+...-....+.+|++|-||.|.- |||.+.+. | + ...+..++|.||...+.
T Consensus 118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRY---vlDal~~~-~-~--~~~~i~LrDys~~Nv~~ 176 (311)
T PF12147_consen 118 HLEELIRQAIARLREQGRPVRILDIAAGHGRY---VLDALEKH-P-E--RPDSILLRDYSPINVEK 176 (311)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccCCcHH---HHHHHHhC-C-C--CCceEEEEeCCHHHHHH
Confidence 44444555544444557889999999999976 66666544 3 2 13478999999988775
No 189
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=70.06 E-value=12 Score=30.78 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
|+|-+++... . -...+++|+=||+|.++. +++..-+. +.++||.|+...+.-+++
T Consensus 30 ealFniL~~~-~-~~g~~vLDLFaGSGalGl---EALSRGA~-------~v~fVE~~~~a~~~i~~N 84 (183)
T PF03602_consen 30 EALFNILQPR-N-LEGARVLDLFAGSGALGL---EALSRGAK-------SVVFVEKNRKAIKIIKKN 84 (183)
T ss_dssp HHHHHHHHCH---HTT-EEEETT-TTSHHHH---HHHHTT-S-------EEEEEES-HHHHHHHHHH
T ss_pred HHHHHHhccc-c-cCCCeEEEcCCccCccHH---HHHhcCCC-------eEEEEECCHHHHHHHHHH
Confidence 4455555443 0 245699999999999995 45544332 689999999988865444
No 190
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=69.68 E-value=4.9 Score=35.47 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=52.0
Q ss_pred cccccccc--chHHHHHHHHHHHHHHh-CC-CCCceEEEecCCchhHHHHHHHHHHHhCc---ccccccceEEEEecCcc
Q 029895 101 SWFTPVEL--FKPWYAHGIAEAIMRTA-NL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAP---ERVYNNMTYISVEIQSL 173 (186)
Q Consensus 101 dF~Ts~ei--fsp~Fg~~lA~~i~~~~-~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P---~~~y~~l~Y~iVEiSp~ 173 (186)
|+|++.+= --..+.-..++.+-+.| .. ...+.|.|+|-|+|....-.+..+.+..+ +....++.|+.||.+|.
T Consensus 26 d~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~ 105 (252)
T COG4121 26 DVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQEILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPF 105 (252)
T ss_pred ccccccccchhhhHHHHHhccCcccccccccccceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCC
Confidence 45555432 12344445556666666 22 36689999999999999999998877642 12456789999999986
Q ss_pred hHH
Q 029895 174 TGR 176 (186)
Q Consensus 174 L~~ 176 (186)
-..
T Consensus 106 ~~~ 108 (252)
T COG4121 106 SPP 108 (252)
T ss_pred Chh
Confidence 544
No 191
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=69.65 E-value=7.9 Score=33.13 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=25.2
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895 132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
+|+|||+|||.-|..+-.. .| .+++.--|..+.++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~----lP-----~l~WqPSD~~~~~~ 62 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA----LP-----HLTWQPSDPDDNLR 62 (204)
T ss_pred eEEEEcCCccHHHHHHHHH----CC-----CCEEcCCCCChHHH
Confidence 6999999999988766443 34 24566667777664
No 192
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=67.40 E-value=9.1 Score=34.15 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
...++++||||.|.....+-..++ + .+.=|+|+.|+.+-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-----~------v~aTE~S~~Mr~rL 132 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-----E------VYATEASPPMRWRL 132 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-----e------EEeecCCHHHHHHH
Confidence 456899999999998887755442 2 44569999998863
No 193
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=66.97 E-value=5.2 Score=35.59 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=24.0
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.++|+|||+|.-+..|-.+.+ +.+-+|+|+.+-+.-
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k-----------~VIatD~s~~mL~~a 71 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK-----------EVIATDVSEAMLKVA 71 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh-----------hheeecCCHHHHHHh
Confidence 799999999955555554432 246677777665543
No 194
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=66.46 E-value=21 Score=29.02 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=45.1
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccccc-ccceEEEEecCcchHHHHHH
Q 029895 102 WFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY-NNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y-~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
|..+..+ .|. ||..|+...+....-.|+|-=||+||+..--........| ..- +..+++-+|+++...+..++
T Consensus 6 ~~~~a~L-~~~----lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~~~~~~g~Di~~~~v~~a~~ 79 (179)
T PF01170_consen 6 FFGPAPL-RPT----LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPP-LNDINELKIIGSDIDPKAVRGARE 79 (179)
T ss_dssp SSSSTSS--HH----HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTST-TTH-CH--EEEEESSHHHHHHHHH
T ss_pred CCCCCCC-CHH----HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCccc-ccccccccEEecCCCHHHHHHHHH
Confidence 5566667 664 5666666665555568999999999998666555433322 100 23458899999999877655
Q ss_pred hc
Q 029895 181 NC 182 (186)
Q Consensus 181 ~~ 182 (186)
++
T Consensus 80 N~ 81 (179)
T PF01170_consen 80 NL 81 (179)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 195
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=65.98 E-value=15 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=24.5
Q ss_pred EEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 133 IYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 133 IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
++++|||+|... . +....+ .. ..++-+|+|+...+..
T Consensus 52 ~ld~~~g~g~~~--~---~~~~~~-~~---~~~~~~d~~~~~~~~~ 88 (257)
T COG0500 52 VLDIGCGTGRLA--L---LARLGG-RG---AYVVGVDLSPEMLALA 88 (257)
T ss_pred eEEecCCcCHHH--H---HHHhCC-CC---ceEEEEeCCHHHHHHH
Confidence 999999999988 2 222222 11 2455589998877663
No 196
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=64.98 E-value=17 Score=33.07 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 119 EAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 119 ~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+|+.+++....-+|+|-|-|+|.|...|.+.+.-.. +.+-.|.....+++-
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptG--------hl~tfefH~~Ra~ka 146 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTG--------HLYTFEFHETRAEKA 146 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCc--------ceEEEEecHHHHHHH
Confidence 3566667655667999999999999999998875432 355677766555543
No 197
>PTZ00387 epsilon tubulin; Provisional
Probab=64.88 E-value=33 Score=32.60 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=37.2
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCCCC----ceEEEecCCch-hHHHHHHHHHHHhCc
Q 029895 102 WFTPVELFKPWYAHGIAEAIMRTANLSVP----LKIYEIGGGSG-TCAKGVMDYIMLNAP 156 (186)
Q Consensus 102 F~Ts~eifsp~Fg~~lA~~i~~~~~~~~~----l~IvEiGaG~G-tLA~dIL~~l~~~~P 156 (186)
|-.--..+++-+.+.+...|.+..+.-.. +.+--+|+||| -++.-|++.+++..|
T Consensus 102 wa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~ 161 (465)
T PTZ00387 102 WAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFP 161 (465)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcc
Confidence 44333333555666666666666632222 35668999998 789999999999887
No 198
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=64.17 E-value=14 Score=32.63 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
..++|+++|||-|.|+..+-+ .. .+.+-||+|+...+.-
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr----~G-------a~VtgiD~se~~I~~A 97 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLAR----LG-------ASVTGIDASEKPIEVA 97 (243)
T ss_pred CCCeEEEecCCccHhhHHHHH----CC-------CeeEEecCChHHHHHH
Confidence 457999999999977765543 22 2578899999888763
No 199
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=63.83 E-value=10 Score=32.95 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHH
Q 029895 85 KAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGV 147 (186)
Q Consensus 85 ~~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dI 147 (186)
.+-...-|+-|.+.-..|=+-| + ..|.+|+. ..+....|.++|||.+.||..+
T Consensus 38 P~~F~~YH~Gfr~Qv~~WP~nP-----v--d~iI~~l~---~~~~~~viaD~GCGdA~la~~~ 90 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKKWPVNP-----V--DVIIEWLK---KRPKSLVIADFGCGDAKLAKAV 90 (219)
T ss_dssp HHHHHHHHHHHHHHHCTSSS-H-----H--HHHHHHHC---TS-TTS-EEEES-TT-HHHHH-
T ss_pred HHHHHHHHHHHHHHHhcCCCCc-----H--HHHHHHHH---hcCCCEEEEECCCchHHHHHhc
Confidence 3444555666665555564333 2 22333332 4566789999999999999665
No 200
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=63.28 E-value=12 Score=34.60 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=29.3
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
..+|+|+|||+|.++...+ ... ..+.+.||+|+...+.-++
T Consensus 221 g~rVLDlfsgtG~~~l~aa---~~g-------a~~V~~VD~s~~al~~a~~ 261 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSAL---MGG-------CSQVVSVDTSQEALDIARQ 261 (396)
T ss_pred CCeEEEeccCCCHHHHHHH---hCC-------CCEEEEEECCHHHHHHHHH
Confidence 4589999999999865332 111 1268899999988876444
No 201
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=63.21 E-value=5.9 Score=35.60 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=28.7
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
..+|+|+|||.|-|...+-+.- . +.+-||+|+.+.+.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg----a-------~V~GID~s~~~V~vA 127 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG----A-------QVTGIDASDDMVEVA 127 (282)
T ss_pred CceEEEeccCccccchhhHhhC----C-------eeEeecccHHHHHHH
Confidence 4579999999999987765542 1 467788888887763
No 202
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=63.20 E-value=32 Score=29.15 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEE
Q 029895 89 KHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISV 168 (186)
Q Consensus 89 ~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iV 168 (186)
..++++|.+++..|.... . +|.+-+.+.. .....+.+|+-.|||+|.-+. +|.+.. .+.+-|
T Consensus 4 ~~W~~~w~~~~~~w~~~~-~-~p~L~~~~~~-----l~~~~~~rvLvPgCG~g~D~~----~La~~G-------~~VvGv 65 (218)
T PF05724_consen 4 EFWEERWQEGQTPWDQGE-P-NPALVEYLDS-----LALKPGGRVLVPGCGKGYDML----WLAEQG-------HDVVGV 65 (218)
T ss_dssp HHHHHHHHTT--TT--TT-S-THHHHHHHHH-----HTTSTSEEEEETTTTTSCHHH----HHHHTT-------EEEEEE
T ss_pred HHHHHHHhcCCCCCCCCC-C-CHHHHHHHHh-----cCCCCCCeEEEeCCCChHHHH----HHHHCC-------CeEEEE
Confidence 467889999988887754 4 5655443333 334455689999999997654 444433 257899
Q ss_pred ecCcchHHH
Q 029895 169 EIQSLTGRD 177 (186)
Q Consensus 169 EiSp~L~~~ 177 (186)
|+|+.-.+.
T Consensus 66 Dls~~Ai~~ 74 (218)
T PF05724_consen 66 DLSPTAIEQ 74 (218)
T ss_dssp ES-HHHHHH
T ss_pred ecCHHHHHH
Confidence 999977665
No 203
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=62.41 E-value=6.8 Score=34.11 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=36.9
Q ss_pred ccccccccchHHHHHHHHHHHHHHh-CCCCCceEEEecC-CchhHHHHHHHHHHHh
Q 029895 101 SWFTPVELFKPWYAHGIAEAIMRTA-NLSVPLKIYEIGG-GSGTCAKGVMDYIMLN 154 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~lA~~i~~~~-~~~~~l~IvEiGa-G~GtLA~dIL~~l~~~ 154 (186)
+|+|+++= |+|+++++|.+-..+ |.+---.+=++|. |+=--=-.+||||...
T Consensus 8 ~wlt~~~N--p~faRv~VNRvW~~~fGrGlV~p~dD~g~~~~~PshPeLLd~La~~ 61 (266)
T PF07587_consen 8 DWLTSPDN--PLFARVIVNRVWQHLFGRGLVEPVDDFGPQGNPPSHPELLDWLAAE 61 (266)
T ss_pred HHhcCCCC--cchHHHHHHHHHHHHcCCcCcCCHhhccCCCCCCCCHHHHHHHHHH
Confidence 69999985 999999999997766 5443334557787 6544345677777553
No 204
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=62.38 E-value=5.3 Score=36.09 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
.+-+++++|||||.||-..+.- .. -+.+.+|+.|.--+.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL----GA------~~v~g~DiDp~AV~aa 201 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL----GA------KKVVGVDIDPQAVEAA 201 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc----CC------ceEEEecCCHHHHHHH
Confidence 4569999999999998655432 21 2467778777655443
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=62.33 E-value=11 Score=37.28 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=33.0
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.-+|+|+|||+|.++...+.. .. -+.+.||+|+...+.-+++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~----Ga------~~V~~vD~s~~al~~a~~N~ 581 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG----GA------KSTTTVDMSNTYLEWAERNF 581 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC----CC------CEEEEEeCCHHHHHHHHHHH
Confidence 458999999999999877652 11 25899999999988755543
No 206
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=61.69 E-value=62 Score=27.85 Aligned_cols=72 Identities=6% Similarity=0.012 Sum_probs=48.6
Q ss_pred HHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEE
Q 029895 89 KHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISV 168 (186)
Q Consensus 89 ~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iV 168 (186)
..++++|++++.-|.-.. . .|++ ..++.+. ..+...+|+..|||.|.-|.- |.+.. .+.+-|
T Consensus 10 ~fW~~rw~~~~~~f~~~~-p-np~L----~~~~~~l-~~~~~~rvLvPgCGkg~D~~~----LA~~G-------~~V~Gv 71 (226)
T PRK13256 10 QYWLDRWQNDDVGFCQES-P-NEFL----VKHFSKL-NINDSSVCLIPMCGCSIDMLF----FLSKG-------VKVIGI 71 (226)
T ss_pred HHHHHHHhcCCCCCccCC-C-CHHH----HHHHHhc-CCCCCCeEEEeCCCChHHHHH----HHhCC-------CcEEEE
Confidence 358999999988885333 4 6655 3333222 333456999999999988764 44433 247899
Q ss_pred ecCcchHHHH
Q 029895 169 EIQSLTGRDT 178 (186)
Q Consensus 169 EiSp~L~~~Q 178 (186)
|+|+.-.+..
T Consensus 72 DlS~~Ai~~~ 81 (226)
T PRK13256 72 ELSEKAVLSF 81 (226)
T ss_pred ecCHHHHHHH
Confidence 9999877764
No 207
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=60.84 E-value=7.2 Score=29.33 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=15.8
Q ss_pred eEEEecCCchhHHHHHHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDY 150 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~ 150 (186)
+|+|+|||.|..+..++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~ 19 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK 19 (143)
T ss_pred CEEEccCCccHHHHHHHHh
Confidence 4899999999998777654
No 208
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=60.65 E-value=22 Score=31.12 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 111 PWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
-.|-.+|++-.. -.++++|+|+|.|+- +..+.. -+.+.||..|..+..-+++
T Consensus 22 avF~~ai~~va~--------d~~~DLGaGsGiLs~-----~Aa~~A------~rViAiE~dPk~a~~a~eN 73 (252)
T COG4076 22 AVFTSAIAEVAE--------DTFADLGAGSGILSV-----VAAHAA------ERVIAIEKDPKRARLAEEN 73 (252)
T ss_pred HHHHHHHHHHhh--------hceeeccCCcchHHH-----HHHhhh------ceEEEEecCcHHHHHhhhc
Confidence 456666665543 368999999997654 333322 1577899999888876655
No 209
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=59.35 E-value=10 Score=35.31 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.5
Q ss_pred CCceEEEecCCch----hHHHHHHHHHHHh
Q 029895 129 VPLKIYEIGGGSG----TCAKGVMDYIMLN 154 (186)
Q Consensus 129 ~~l~IvEiGaG~G----tLA~dIL~~l~~~ 154 (186)
.++.|.|+|||+| .++..|++.+++.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 5789999999999 5667778888764
No 210
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=56.74 E-value=22 Score=33.71 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccc
Q 029895 87 YMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNM 163 (186)
Q Consensus 87 y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l 163 (186)
+...+.+-|+.+. ++.|||..-+++.... +....-..+++|.|-|-++.-+.++-+....
T Consensus 157 d~~~L~~hYk~~s----------s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~s------- 219 (419)
T KOG3924|consen 157 DPAILNQHYKSFS----------SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKS------- 219 (419)
T ss_pred CHHHHHHhhcccc----------ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccc-------
Confidence 3567777887663 6789999999998876 4445557899999999999999888754321
Q ss_pred eEEEEecCcchHH
Q 029895 164 TYISVEIQSLTGR 176 (186)
Q Consensus 164 ~Y~iVEiSp~L~~ 176 (186)
+-+|++....+
T Consensus 220 --vG~eim~~pS~ 230 (419)
T KOG3924|consen 220 --VGFEIMDKPSQ 230 (419)
T ss_pred --cceeeecCcHH
Confidence 44566655544
No 211
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=56.66 E-value=18 Score=26.66 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=34.3
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHhCccccc--ccceEEEEecCcchHHHH
Q 029895 126 NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY--NNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y--~~l~Y~iVEiSp~L~~~Q 178 (186)
...+++.|+=+|+|..+. ||..+.... .-+ .++++++.|++|..-.++
T Consensus 20 ~~~~~~~iLl~G~gD~Rh---vl~Tl~~~~--~~~~~~~l~~~l~D~~~~vlARn 69 (100)
T PF14737_consen 20 PPDEDLNILLLGCGDLRH---VLKTLASLP--RSYDGRKLHFTLNDINPEVLARN 69 (100)
T ss_pred CCCCCceEEEecCccHHH---HHHHHHhcc--cCcccceeEEEEecCcHHHHHHH
Confidence 456789999999999764 455544332 222 369999999999877765
No 212
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.16 E-value=22 Score=25.78 Aligned_cols=35 Identities=6% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 138 GGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 138 aG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
+|-|.++..|++.|++.. .++++||.++...+.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~~-------~~vvvid~d~~~~~~~~ 38 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG-------IDVVVIDRDPERVEELR 38 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT-------SEEEEEESSHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCC-------CEEEEEECCcHHHHHHH
Confidence 356789999999998854 25999999998877643
No 213
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=52.81 E-value=1.6e+02 Score=25.69 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
..+|.-|.+..+ ..+..+=++.|+|.++..|..++++..| .++.+.||..
T Consensus 150 ~t~~~Ei~~q~~--~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~-----~~kvi~Vep~ 199 (290)
T TIGR01138 150 TSTGPEIWQQTG--GRITHFVSSMGTTGTIMGVSRFLKEQNP-----PVQIVGLQPE 199 (290)
T ss_pred HhHHHHHHHHcC--CCCCEEEECCCchHHHHHHHHHHHHhCC-----CCEEEEEeCC
Confidence 468888877763 2245677899999999999999998776 3688899874
No 214
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=52.70 E-value=14 Score=33.31 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
+.+-.++.+.++.... .|+|+=||.|+++.-+-+. .. +.+-||+++...+.-+++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~----~~-------~V~gvE~~~~av~~A~~N 237 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK----AK-------KVIGVEIVEEAVEDAREN 237 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC----SS-------EEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh----CC-------eEEEeeCCHHHHHHHHHH
Confidence 3344444455554444 7999999999999875432 22 578899999887654443
No 215
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=51.65 E-value=19 Score=29.47 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCceEE--EecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 110 KPWYAHGIAEAIMRTANLSVPLKIY--EIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~~~l~Iv--EiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
.--||+.||+.+ .+....++ |+|||.=||++.|+..+--.. --.+=+|+||+.=
T Consensus 11 t~~lg~~l~~~l-----~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~---~V~SPTFtlv~~Y 66 (149)
T COG0802 11 TLALGERLAEAL-----KAGDVVLLSGDLGAGKTTLVRGIAKGLGVDG---NVKSPTFTLVEEY 66 (149)
T ss_pred HHHHHHHHHhhC-----CCCCEEEEEcCCcCChHHHHHHHHHHcCCCC---cccCCCeeeehhh
Confidence 345666666655 22222222 899999999999999986321 1112278888654
No 216
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=50.98 E-value=1.7e+02 Score=25.45 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
+|.-|.+.++....+..+=++.|+|.++..|..++++..| + ++.+-||+.+.
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~-~----~~vigV~~~~~ 207 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNE-D----IRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCC-C----CcEEEEEeccc
Confidence 4666666653212356677899999999999999998877 3 45666776443
No 217
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=50.95 E-value=60 Score=27.14 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=34.3
Q ss_pred CCCCceEEEecCCchhHHHHHHHHHHHhCcccccc-cceEEEEecCcchHHHHHHh
Q 029895 127 LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYN-NMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 127 ~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~-~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
...+++|.-.||++|.=+=.|.-.+.+..+ .... +++..-.|+|+..-++-++-
T Consensus 29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~-~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLP-GALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-S-EEEEETT-TTTHHHHHHHHHHHHHH--S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHHHHhc-ccCCCceEEEEEECCHHHHHHHHhC
Confidence 347899999999999766666555555322 2222 67888899999877765543
No 218
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=48.69 E-value=91 Score=28.61 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHhCCC---CC-ceEEEecCCch-hHHHHHHHHHHHhCc
Q 029895 110 KPWYAHGIAEAIMRTANLS---VP-LKIYEIGGGSG-TCAKGVMDYIMLNAP 156 (186)
Q Consensus 110 sp~Fg~~lA~~i~~~~~~~---~~-l~IvEiGaG~G-tLA~dIL~~l~~~~P 156 (186)
++-+.+.+-..|.+..+.- +. ..+-.+|+||| -++.-|++.+++..|
T Consensus 78 g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~ 129 (379)
T cd02190 78 GHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFP 129 (379)
T ss_pred chhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcC
Confidence 4444555555555555322 22 46679999997 688889999999887
No 219
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=47.22 E-value=96 Score=28.18 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhC-C--CCC-ceEEEecCCch-hHHHHHHHHHHHhCc
Q 029895 111 PWYAHGIAEAIMRTAN-L--SVP-LKIYEIGGGSG-TCAKGVMDYIMLNAP 156 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~-~--~~~-l~IvEiGaG~G-tLA~dIL~~l~~~~P 156 (186)
+-+.+.+-..|.+..+ + .+. ..+-.+|+|+| -++.-|++.+++..|
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 3444555555544442 2 222 45669999997 688889999998876
No 220
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=47.00 E-value=28 Score=30.23 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.9
Q ss_pred eEEEecCCchhHHHHHHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDY 150 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~ 150 (186)
+|+++|+|+|.|...+.+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~e 88 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKE 88 (227)
T ss_pred ceeeccCCchHHHHHHHHh
Confidence 9999999999987776543
No 221
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=46.27 E-value=69 Score=31.14 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCceeHHHHHHHhhc--CCCCccccCCC-----ccccCCCcccccccccChHHHHHHHHHHhhhcCCccccccccch-HH
Q 029895 41 DKPVLVRDFIHSALY--HPKHGYFSQRS-----RSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFK-PW 112 (186)
Q Consensus 41 ~~~i~frdFM~~aLY--~p~~GYY~~~~-----~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~eifs-p~ 112 (186)
+|+=|...|++..|- +-.-|-|+++. ++|--.|.+|+ ..+|.++..+.+.+.. -.++.++ . |-
T Consensus 70 nGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is------~e~f~~~f~~v~~~l~--~~~~~~~-~~pt 140 (530)
T PLN02881 70 KGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDIS------EEKFLRYFWWCWDRLK--EKTTEDL-PMPA 140 (530)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecC------HHHHHHHHHHHHHHHH--Hhccccc-CCCc
Confidence 677799999999884 44678888866 23444555554 6677777766666554 1233333 2 43
Q ss_pred HHHHHHH-HHHHHhCCCCCceEEEec-CCchh
Q 029895 113 YAHGIAE-AIMRTANLSVPLKIYEIG-GGSGT 142 (186)
Q Consensus 113 Fg~~lA~-~i~~~~~~~~~l~IvEiG-aG~Gt 142 (186)
|=+.+.. .+..+.....+..|+|+| +|++.
T Consensus 141 ~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~D 172 (530)
T PLN02881 141 YFRFLTLLAFKIFSAEQVDVAILEVGLGGRLD 172 (530)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence 3344333 333333567788999999 55554
No 222
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=45.96 E-value=11 Score=27.22 Aligned_cols=34 Identities=24% Similarity=0.056 Sum_probs=5.5
Q ss_pred EEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 134 YEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 134 vEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
+|+|...|.-+.-|+..+++... .+++.||..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~------~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR------GKLYSVDPFPG 34 (106)
T ss_dssp --------------------------------EEEESS--
T ss_pred Ccccccccccccccccccccccc------CCEEEEECCCc
Confidence 69999999999999998876541 46889999884
No 223
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=45.33 E-value=44 Score=26.36 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
-+-..|.+.+++.+-.+. -.|+|.=+|+||-+...+..=| +|+.+|+++.-.+.-
T Consensus 175 ~kP~~l~~~lI~~~t~~g-diVlDpF~GSGTT~~aa~~l~R-----------~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPG-DIVLDPFAGSGTTAVAAEELGR-----------RYIGIEIDEEYCEIA 229 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT--EEEETT-TTTHHHHHHHHTT------------EEEEEESSHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccc-eeeehhhhccChHHHHHHHcCC-----------eEEEEeCCHHHHHHh
Confidence 344567777777774443 3699999999999887665421 499999999887764
No 224
>PF08157 NUC129: NUC129 domain; InterPro: IPR012579 This C-terminal domain is found in a novel family of hypothetical nucleolar proteins [].; GO: 0005634 nucleus
Probab=44.55 E-value=14 Score=26.22 Aligned_cols=14 Identities=50% Similarity=0.880 Sum_probs=12.3
Q ss_pred eHHHHHHHhhcCCC
Q 029895 45 LVRDFIHSALYHPK 58 (186)
Q Consensus 45 ~frdFM~~aLY~p~ 58 (186)
.-.|||+.+||+|.
T Consensus 18 aAk~Fi~~~LYGpg 31 (63)
T PF08157_consen 18 AAKDFIQSRLYGPG 31 (63)
T ss_pred HHHHHHHHhccCCC
Confidence 45799999999997
No 225
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=43.52 E-value=48 Score=31.05 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCCchhHHH
Q 029895 114 AHGIAEAIMRTANLSVPLKIYEIGGGSGTCAK 145 (186)
Q Consensus 114 g~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~ 145 (186)
=++||..|+...+....-.+++-=||+||++-
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~I 207 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILI 207 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHH
Confidence 47889999888765444589999999999863
No 226
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=41.94 E-value=67 Score=29.40 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEec
Q 029895 112 WYAHGIAEAIMRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEi 170 (186)
-|++..||+.+-.. .-...++|||+|-|.|.-=-.+++.|.+.. .--..++++.|+.
T Consensus 92 ~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~--~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 92 KFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRP--GGPPSLRITGIGP 149 (374)
T ss_pred hhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCC--CCCCeEEEEeccC
Confidence 47888899876555 445779999999999999999999997642 1124788999988
No 227
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=41.90 E-value=29 Score=32.17 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHHh--------------CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 108 LFKPWYAHGIAEAIMRTA--------------NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 108 ifsp~Fg~~lA~~i~~~~--------------~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
-|..+.+.-|.+.|+.-- ..-..-.|+++|||+|.|.. +...+ ..-..+.||-|.-
T Consensus 25 Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~-----F~akA-----GA~~V~aVe~S~i 94 (346)
T KOG1499|consen 25 YFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSM-----FAAKA-----GARKVYAVEASSI 94 (346)
T ss_pred hhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHH-----HHHHh-----CcceEEEEechHH
Confidence 356677777777776522 11234589999999997653 22221 1235677887765
Q ss_pred h
Q 029895 174 T 174 (186)
Q Consensus 174 L 174 (186)
.
T Consensus 95 a 95 (346)
T KOG1499|consen 95 A 95 (346)
T ss_pred H
Confidence 4
No 228
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=40.10 E-value=26 Score=30.78 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=15.5
Q ss_pred CCceEEEecCCchhHHHHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYI 151 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l 151 (186)
.+..|+|+|+|+| -..|+-++
T Consensus 86 ~~~~vlELGsGtg--lvG~~aa~ 106 (248)
T KOG2793|consen 86 KYINVLELGSGTG--LVGILAAL 106 (248)
T ss_pred cceeEEEecCCcc--HHHHHHHH
Confidence 4567999999999 44555554
No 229
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=38.68 E-value=52 Score=31.26 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=21.6
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
+-.|+++|||+|.| ..+...+ ..-+...||.|.
T Consensus 178 ~kiVlDVGaGSGIL-----S~FAaqA-----GA~~vYAvEAS~ 210 (517)
T KOG1500|consen 178 DKIVLDVGAGSGIL-----SFFAAQA-----GAKKVYAVEASE 210 (517)
T ss_pred CcEEEEecCCccHH-----HHHHHHh-----CcceEEEEehhH
Confidence 45899999999954 4554432 122456688875
No 230
>PLN02356 phosphateglycerate kinase
Probab=38.37 E-value=1.3e+02 Score=28.47 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 112 WYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 112 ~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
..|+..|.-|.+..+ ..+..+=++.|+|.+...|-.++++..| + ++.+.||..
T Consensus 234 ahg~gTg~EI~eQl~--g~~D~vVv~vGtGGti~Gva~~lK~~~P-~----vkVigVep~ 286 (423)
T PLN02356 234 AHYEGTGPEIWEQTQ--GNLDAFVAAAGTGGTLAGVSRFLQEKNP-N----IKCFLIDPP 286 (423)
T ss_pred HHHhhHHHHHHHhcC--CCCCEEEeCCCchHHHHHHHHHHHHhCC-C----CEEEEEecC
Confidence 446666777777663 2456777899999999999999999887 3 788889964
No 231
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=37.88 E-value=2e+02 Score=25.47 Aligned_cols=62 Identities=6% Similarity=0.166 Sum_probs=43.3
Q ss_pred HHHHHHHHHHh---CCCCCceEEEecCCchhHHHHHHHHHHHhCccccc-ccceEEEEecCcchHHH
Q 029895 115 HGIAEAIMRTA---NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY-NNMTYISVEIQSLTGRD 177 (186)
Q Consensus 115 ~~lA~~i~~~~---~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y-~~l~Y~iVEiSp~L~~~ 177 (186)
+.+++.+...+ ..+.+++|..+||+||.=.=.|--.+.+..| .+- ..++.+-.|||..--++
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~-~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALG-KLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhc-cccCCceEEEEEECCHHHHHH
Confidence 66778887755 2236899999999999766666666666555 322 25788888999865544
No 232
>PTZ00335 tubulin alpha chain; Provisional
Probab=37.56 E-value=1.6e+02 Score=27.75 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhC---CCCCc-eEEEecCCchh-HHHHHHHHHHHhCc
Q 029895 111 PWYAHGIAEAIMRTAN---LSVPL-KIYEIGGGSGT-CAKGVMDYIMLNAP 156 (186)
Q Consensus 111 p~Fg~~lA~~i~~~~~---~~~~l-~IvEiGaG~Gt-LA~dIL~~l~~~~P 156 (186)
+-+-+.+-..|.+..+ ..+.+ .+--+|+|||. |+.-|++.|++..|
T Consensus 112 ~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp 162 (448)
T PTZ00335 112 KEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (448)
T ss_pred hhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcc
Confidence 3334444444544442 22333 45588988865 88899999999888
No 233
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=37.27 E-value=54 Score=30.33 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=32.8
Q ss_pred ccccccccchHHHHHHH---HHHHHHHh-----CCCCCceEEEecCCchhHHHHHHHH
Q 029895 101 SWFTPVELFKPWYAHGI---AEAIMRTA-----NLSVPLKIYEIGGGSGTCAKGVMDY 150 (186)
Q Consensus 101 dF~Ts~eifsp~Fg~~l---A~~i~~~~-----~~~~~l~IvEiGaG~GtLA~dIL~~ 150 (186)
.|.+..+.|++.|-++- .+-+.... +...-...|++|+|.|++++.||..
T Consensus 141 ~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~ 198 (342)
T KOG3178|consen 141 GYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSK 198 (342)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHh
Confidence 47777776677765543 22222111 2233568999999999999999983
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=37.03 E-value=87 Score=27.46 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=31.1
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGR 176 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~ 176 (186)
.-+|+=+||.+||-...|-|..-.... ...||.||..-+
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~--------VYaVEfs~r~~r 112 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGV--------VYAVEFSPRSMR 112 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSE--------EEEEESSHHHHH
T ss_pred CCEEEEecccCCCccchhhhccCCCCc--------EEEEEecchhHH
Confidence 458999999999999999998865543 567999996544
No 235
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=36.61 E-value=2.6e+02 Score=26.06 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.0
Q ss_pred eEEEecCCch-hHHHHHHHHHHHhCc
Q 029895 132 KIYEIGGGSG-TCAKGVMDYIMLNAP 156 (186)
Q Consensus 132 ~IvEiGaG~G-tLA~dIL~~l~~~~P 156 (186)
.+-.+|+|+| -++.-|++.|++..|
T Consensus 134 ~~~sl~GGTGSG~gs~l~e~l~d~y~ 159 (425)
T cd02187 134 LTHSLGGGTGSGMGTLLISKIREEYP 159 (425)
T ss_pred EEeecCCCccccHHHHHHHHHHHhcC
Confidence 5668999998 789999999999888
No 236
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=36.47 E-value=8.7 Score=36.36 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=28.9
Q ss_pred ceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 131 LKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
-.|+++|+|-||-+...-+- .| ++- +-+|||.||.|++.=.
T Consensus 115 qsiLDvG~GPgtgl~A~n~i----~P-dl~---sa~ile~sp~lrkV~~ 155 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDI----WP-DLK---SAVILEASPALRKVGD 155 (484)
T ss_pred chhhccCCCCchhhhhhccc----CC-Cch---hhhhhccCHHHHHHHH
Confidence 36999999888865443333 36 432 4689999999998743
No 237
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=36.10 E-value=21 Score=31.00 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=29.7
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
...+.+|.|||-|+..+++|--+ ++ +.-+||.++.+.+.-++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--------f~--~VDlVEp~~~Fl~~a~~ 96 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--------FD--EVDLVEPVEKFLEQAKE 96 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---------S--EEEEEES-HHHHHHHHH
T ss_pred CcceEEecccccchhHHHHHHHh--------cC--EeEEeccCHHHHHHHHH
Confidence 45689999999999999987543 11 46789999999887543
No 238
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=36.01 E-value=1.3e+02 Score=26.12 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhC-CCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 115 HGIAEAIMRTAN-LSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 115 ~~lA~~i~~~~~-~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
..+|..|.+.+. ....+..+=+.+|+|.++..|..++++..| . ++.+.||...
T Consensus 158 ~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~-~----~~ii~V~~~~ 211 (307)
T cd06449 158 VGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGR-Q----RRVIGIDASA 211 (307)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCC-C----CeEEEEEecC
Confidence 467777776662 222345667889999999999999988776 3 5788888754
No 239
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=35.85 E-value=1.4e+02 Score=24.65 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=32.3
Q ss_pred cccccccchHHHHHHHHHHHHHHhC-C---CCCceEEEecCCchh-HHHHHHHHHHHhCc
Q 029895 102 WFTPVELFKPWYAHGIAEAIMRTAN-L---SVPLKIYEIGGGSGT-CAKGVMDYIMLNAP 156 (186)
Q Consensus 102 F~Ts~eifsp~Fg~~lA~~i~~~~~-~---~~~l~IvEiGaG~Gt-LA~dIL~~l~~~~P 156 (186)
|-..-..+++-..+.+...|.+..+ + ..=+.+.=+|+|||+ ++.-|++.+++..|
T Consensus 95 ~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 95 WAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 4333333233444555555555552 1 112456689999987 55678888988876
No 240
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=35.77 E-value=9.2 Score=34.17 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=31.2
Q ss_pred hHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcc
Q 029895 29 PLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAA 75 (186)
Q Consensus 29 ~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~ 75 (186)
.+++++..-|..+ .-++++|.+ -+...|||...-..-|+.|+|
T Consensus 205 ~i~~vl~~ai~~g-Gtt~r~~~~---~~g~~G~fq~~l~VYgR~Gep 247 (273)
T COG0266 205 AIKDVLADAIERG-GTTLRDFVN---ADGKPGYFQQELKVYGRAGEP 247 (273)
T ss_pred HHHHHHHHHHHhC-CCcccceec---cCCCCCccceeEEEecCCCCC
Confidence 4555555555544 479999999 456789999988778888855
No 241
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=35.72 E-value=1.9e+02 Score=25.37 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhC----CCCCceEEEecCCch-hHHHHHHHHHHHhCc
Q 029895 113 YAHGIAEAIMRTAN----LSVPLKIYEIGGGSG-TCAKGVMDYIMLNAP 156 (186)
Q Consensus 113 Fg~~lA~~i~~~~~----~~~~l~IvEiGaG~G-tLA~dIL~~l~~~~P 156 (186)
+.+.|-..+....+ ...-..+..+|+|+| -++.-|++.+++..|
T Consensus 71 ~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 71 YQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 34444444444432 222245669999998 577889999998776
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=34.88 E-value=52 Score=31.53 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=33.5
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTE 179 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~ 179 (186)
.-+++=+|+|.|--++.+|.| | +-.+.+.||..|.+.+.-+
T Consensus 290 a~~vLvlGGGDGLAlRellky-----P----~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY-----P----QVEQITLVDLDPRMIELAS 330 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC-----C----CcceEEEEecCHHHHHHhh
Confidence 347889999999999988876 4 2347899999999998754
No 243
>PHA01634 hypothetical protein
Probab=33.31 E-value=55 Score=26.95 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=31.6
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHhc
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERNC 182 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~~ 182 (186)
.-+|++|||+-|.-|.=.+ ++ -+ -..+.+|++|.+++.-+++|
T Consensus 29 ~KtV~dIGA~iGdSaiYF~--l~-GA-------K~Vva~E~~~kl~k~~een~ 71 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFL--LR-GA-------SFVVQYEKEEKLRKKWEEVC 71 (156)
T ss_pred CCEEEEecCCccchhhHHh--hc-Cc-------cEEEEeccCHHHHHHHHHHh
Confidence 4589999999998664332 11 12 25788999999999877777
No 244
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=32.64 E-value=2.4e+02 Score=25.67 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=50.9
Q ss_pred CCceeHHHHHHHhhc--CCCCccccCCC-----ccccCCCcccccccccChHHHHHHHHHHhhhcCCccccccccchHHH
Q 029895 41 DKPVLVRDFIHSALY--HPKHGYFSQRS-----RSVGVLDAAIKFNQLQGRKAYMKHVDKIYKQSEISWFTPVELFKPWY 113 (186)
Q Consensus 41 ~~~i~frdFM~~aLY--~p~~GYY~~~~-----~~iG~~G~~~Df~~l~~~~~y~~~~~~~y~~~~~dF~Ts~eifsp~F 113 (186)
+|+=|...|++..|- +-.-|.|+++. ++|--.|.+|+ ..++.+...+.-...+ + .++ .+|
T Consensus 58 NGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~------~~~~~~~~~~~~~~~~-~----~~~--t~f 124 (416)
T PRK10846 58 NGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELP------ESAHTASFAEIEAARG-D----ISL--TYF 124 (416)
T ss_pred CChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECC------HHHHHHHHHHHHHHhc-C----CCC--CHH
Confidence 677899999999883 44678888763 23334444443 3344444444333222 1 123 355
Q ss_pred HHHHHHHHHHHhCCCCCceEEEec-CCch
Q 029895 114 AHGIAEAIMRTANLSVPLKIYEIG-GGSG 141 (186)
Q Consensus 114 g~~lA~~i~~~~~~~~~l~IvEiG-aG~G 141 (186)
--..+..+..+.+...+..|+|.| +|+.
T Consensus 125 e~~t~~a~~~f~~~~vd~~VlEvglggrl 153 (416)
T PRK10846 125 EYGTLSALWLFKQAQLDVVILEVGLGGRL 153 (416)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCCc
Confidence 444455554454566678999999 5543
No 245
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=31.91 E-value=36 Score=31.11 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
..-+|+|||||+|..+-.++.. .+ + ..+-||.|+..-
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~----GA-~-----~ViGiDP~~lf~ 151 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR----GA-K-----SVIGIDPSPLFY 151 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc----CC-C-----EEEEECCChHHH
Confidence 3459999999999998776643 33 2 467778777543
No 246
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.18 E-value=1.6e+02 Score=23.74 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895 118 AEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 118 A~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
|.++.+.-.+ -+|+|+|.|. =.+|-++|++.. +..+.+||++...
T Consensus 5 a~~iAre~~~---gkVvEVGiG~---~~~VA~~L~e~g-------~dv~atDI~~~~a 49 (129)
T COG1255 5 AEYIARENAR---GKVVEVGIGF---FLDVAKRLAERG-------FDVLATDINEKTA 49 (129)
T ss_pred HHHHHHHhcC---CcEEEEccch---HHHHHHHHHHcC-------CcEEEEecccccC
Confidence 4455544433 3899999985 457888888764 3467788887633
No 247
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=1.3e+02 Score=27.95 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=45.9
Q ss_pred cccccchHHHHHHHHHHH--HHHh-CCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 104 TPVELFKPWYAHGIAEAI--MRTA-NLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 104 Ts~eifsp~Fg~~lA~~i--~~~~-~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
-+|+|-.-+|.++.|.-. ...+ ......+||.+|||.-+|+-.+++... +.++.|+=||-++....+-
T Consensus 59 r~P~inRGy~~R~~aI~~~v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~-------~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 59 RAPEINRGYWARTMAIRHAVRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGE-------LDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceecchhhHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchhhhhhccCC-------CCcceEEEecCcHHHHHHH
Confidence 367775667777766432 2222 346778999999999999998887641 2445677777776665543
No 248
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=30.58 E-value=2.9e+02 Score=24.58 Aligned_cols=51 Identities=4% Similarity=0.029 Sum_probs=36.7
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTER 180 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~ 180 (186)
.+++|.-.||.||.=+=.|.-.+.+..+ ..-.+++.+-.|||+..-++-++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~-~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLG-TAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhc-ccCCCcEEEEEECCHHHHHHHHh
Confidence 4699999999999877776666665433 22236789999999977665443
No 249
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=30.56 E-value=31 Score=30.64 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=19.8
Q ss_pred CCceEEEecCCchhHHHHHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIM 152 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~ 152 (186)
.+.+++++|||+|...+.+-.++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe 135 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE 135 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH
Confidence 467999999999999888766654
No 250
>PRK10717 cysteine synthase A; Provisional
Probab=29.81 E-value=1.9e+02 Score=25.51 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
++|.-|.+..+. ++..+=++.|+|.++..|..++++..| + ++.+.||..-
T Consensus 164 t~a~Ei~~ql~~--~~d~iv~~vG~GG~~~Gi~~~~k~~~~-~----~~vi~Vep~~ 213 (330)
T PRK10717 164 TTGPEIWEQTDG--KVDGFVCAVGTGGTLAGVSRYLKETNP-K----VKIVLADPTG 213 (330)
T ss_pred hHHHHHHHhcCC--CCCEEEEecCchHHHHHHHHHHHHhCC-C----CEEEEEcCCC
Confidence 677777777642 234455899999999999999998776 4 5788888853
No 251
>PLN03013 cysteine synthase
Probab=29.72 E-value=1.7e+02 Score=27.72 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
+++|..|.+..+ ..+..+=.+.|+|-+...|-.++++..| + ++.+.||..
T Consensus 267 ~ttg~EI~eq~~--~~~D~vV~~vGtGGtisGiar~lKe~~P-~----vkVigVep~ 316 (429)
T PLN03013 267 ETTGPEIWDDTK--GKVDIFVAGIGTGGTITGVGRFIKEKNP-K----TQVIGVEPT 316 (429)
T ss_pred HHHHHHHHHhcC--CCCCEEEEeCCccHHHHHHHHHHHhhCC-C----CEEEEEEeC
Confidence 467777766542 2457778899999999999999999887 4 578888874
No 252
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=29.55 E-value=1.6e+02 Score=23.52 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHH
Q 029895 113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIML 153 (186)
Q Consensus 113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~ 153 (186)
||-.+|+.+.+.+..+....+++.| ++..++++++..
T Consensus 18 vG~~va~~L~~~~~~~~~v~vid~g----t~~~~ll~~l~~ 54 (164)
T PRK10466 18 IGVRIVEALEQRYILPDYVEILDGG----TAGMELLGDMAN 54 (164)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecc----ccHHHHHHHHhC
Confidence 5666666665554445556777765 445667777643
No 253
>PLN00221 tubulin alpha chain; Provisional
Probab=29.53 E-value=3.3e+02 Score=25.70 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHh---CCCCCc-eEEEecCCchh-HHHHHHHHHHHhCc
Q 029895 115 HGIAEAIMRTA---NLSVPL-KIYEIGGGSGT-CAKGVMDYIMLNAP 156 (186)
Q Consensus 115 ~~lA~~i~~~~---~~~~~l-~IvEiGaG~Gt-LA~dIL~~l~~~~P 156 (186)
+-+-..|.+.. ...+.+ .+--+|+|+|. |+.-||+.|++..|
T Consensus 116 ~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~ 162 (450)
T PLN00221 116 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
T ss_pred HHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcc
Confidence 44444444444 233344 45589999954 89999999999888
No 254
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=29.29 E-value=54 Score=31.87 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=17.1
Q ss_pred ceEEEecCCchhHHHHHHHH
Q 029895 131 LKIYEIGGGSGTCAKGVMDY 150 (186)
Q Consensus 131 l~IvEiGaG~GtLA~dIL~~ 150 (186)
-+++++|||.|+++.-+++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEEeccceeehhHHHHhhC
Confidence 47789999999999988764
No 255
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=29.11 E-value=1.3e+02 Score=26.78 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=33.7
Q ss_pred Ccccc--ccccchHHHHHHHHHHHHHHh----CCCCCceEEEecCCchhHHHHHHHH
Q 029895 100 ISWFT--PVELFKPWYAHGIAEAIMRTA----NLSVPLKIYEIGGGSGTCAKGVMDY 150 (186)
Q Consensus 100 ~dF~T--s~eifsp~Fg~~lA~~i~~~~----~~~~~l~IvEiGaG~GtLA~dIL~~ 150 (186)
+||=. ..|- .+.|+..+.. +.+.. ....+.+|+=-|||-|+||-+|-..
T Consensus 23 RDWS~eg~~ER-~~~~~~I~~~-L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~ 77 (270)
T PF07942_consen 23 RDWSSEGEEER-DPCYSPILDE-LESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL 77 (270)
T ss_pred hhCchhhHHHH-HHHHHHHHHH-HHHhhcccccCCCccEEEEcCCCcchHHHHHhhc
Confidence 36765 5677 7777665543 33333 2345689999999999999998553
No 256
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=29.08 E-value=4e+02 Score=23.46 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCC-CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 116 GIAEAIMRTANL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 116 ~lA~~i~~~~~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
.++.-|.+.+.. ...+..+=+..|+|.++..|..++++..| +++.+.||...
T Consensus 168 ~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~-----~~~vigVe~~~ 220 (331)
T PRK03910 168 ACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGP-----DIPVIGVTVSR 220 (331)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCC-----CCeEEEEEecC
Confidence 467777776632 11345667889999999999999998776 36778888743
No 257
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=28.97 E-value=1.6e+02 Score=28.28 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=27.8
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
-..+|++|+|.|.|++=+- +-..++..-||-|..+-++-
T Consensus 154 i~~vvD~GaG~G~LSr~lS----------l~y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLS----------LGYGLSVKAIEGSQRLVERA 192 (476)
T ss_pred CCeeEEcCCCchHHHHHHh----------hccCceEEEeccchHHHHHH
Confidence 3479999999999986431 11235788899997766653
No 258
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=27.19 E-value=84 Score=28.31 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCCCCceEEEecCCchhHHHH----HHHHHHHh
Q 029895 126 NLSVPLKIYEIGGGSGTCAKG----VMDYIMLN 154 (186)
Q Consensus 126 ~~~~~l~IvEiGaG~GtLA~d----IL~~l~~~ 154 (186)
..+.+++|.|+||-+|-++.. |++.+++.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~ 45 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRER 45 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 457789999999999987765 45555543
No 259
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=26.96 E-value=2.1e+02 Score=26.01 Aligned_cols=83 Identities=10% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHh-CC-CCCceEEEecCCchhHHHHHHHHHHHhCccccccc
Q 029895 85 KAYMKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTA-NL-SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNN 162 (186)
Q Consensus 85 ~~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~-~~-~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~ 162 (186)
+-|.+.+.+..++.. .|..-. - -.+|-+.|+-.+.... .+ ..-....+||||.|.+++.++..- . +
T Consensus 29 ~iFDR~~KR~qrdrA-a~~~d~-k-~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--v---e---- 96 (325)
T KOG2940|consen 29 KIFDRDLKRIQRDRA-AWLSDQ-K-NDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--V---E---- 96 (325)
T ss_pred HhhhhHHHHHHHhHH-hhcchh-h-hhHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc--h---h----
Confidence 334455555554432 232222 2 2567777777776655 21 122368999999999998876542 1 1
Q ss_pred ceEEEEecCcchHHHHHH
Q 029895 163 MTYISVEIQSLTGRDTER 180 (186)
Q Consensus 163 l~Y~iVEiSp~L~~~Q~~ 180 (186)
+.+.+|.|-.+.+..+.
T Consensus 97 -kli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 97 -KLIMMDTSYDMIKSCRD 113 (325)
T ss_pred -heeeeecchHHHHHhhc
Confidence 36788888888776543
No 260
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=26.85 E-value=1.9e+02 Score=25.07 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHH
Q 029895 117 IAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYI 151 (186)
Q Consensus 117 lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l 151 (186)
|-+.+.+.++..+-..++=+|+| .|++.+|+|-
T Consensus 71 L~~ff~~~Lg~~~~tnviiVG~G--nlG~All~Y~ 103 (211)
T COG2344 71 LRDFFDDLLGQDKTTNVIIVGVG--NLGRALLNYN 103 (211)
T ss_pred HHHHHHHHhCCCcceeEEEEccC--hHHHHHhcCc
Confidence 34445555566666788888886 5899999984
No 261
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=1.4e+02 Score=26.30 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=32.1
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 129 VPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
.....+++|.|+|.|..-+-..+....- .-+-||.-|.|-+.-+++
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~-------~~~GIEh~~eLVe~Sk~n 127 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGG-------NVHGIEHIPELVEYSKKN 127 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCc-------cccchhhhHHHHHHHHHH
Confidence 3468999999999998877766644332 126678888877765443
No 262
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=26.59 E-value=2.3e+02 Score=26.70 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=56.8
Q ss_pred ccceeeecCCCChhHHHHHhhhhhCCCceeHHHHHHHhhcCCCCccccCCCccccCCCcccccccccChHHHHHHHHHHh
Q 029895 16 NGVDLIAVNPCQPPLKALFSTHIVGDKPVLVRDFIHSALYHPKHGYFSQRSRSVGVLDAAIKFNQLQGRKAYMKHVDKIY 95 (186)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~~~~I~~~~~i~frdFM~~aLY~p~~GYY~~~~~~iG~~G~~~Df~~l~~~~~y~~~~~~~y 95 (186)
-|+.++.+..+.--|+.-+.+ -|++|.-|=+.-||.-+. .+|..-
T Consensus 152 lGA~V~pV~sGs~TLKDA~ne------------AlRdWvtn~~~ThY~iGs-a~GPHP---------------------- 196 (396)
T COG0133 152 LGAEVVPVTSGSGTLKDAINE------------ALRDWVTNVEDTHYLIGS-AAGPHP---------------------- 196 (396)
T ss_pred cCceEEEeccCCchHHHHHHH------------HHHHHHhccccceEEEee-ccCCCC----------------------
Confidence 366666666666666655443 233444555667887655 455542
Q ss_pred hhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCch
Q 029895 96 KQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSG 141 (186)
Q Consensus 96 ~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~G 141 (186)
|=|-+--|+.+-|+-.=.+|++..+.-.+..|--+|+|+-
T Consensus 197 ------yP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSN 236 (396)
T COG0133 197 ------YPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSN 236 (396)
T ss_pred ------chHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcc
Confidence 6677777788888888888888887666677888888763
No 263
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=26.10 E-value=4.6e+02 Score=23.15 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.9
Q ss_pred CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
.+..+=++.|+|.++..|..+++...| + ++.+.||+..
T Consensus 184 ~~d~vv~~vGtGGt~aGi~~~lk~~~~-~----~kVigv~~~~ 221 (329)
T PRK14045 184 RFDSIVVAVGSGGTLAGLSLGLAILNA-E----WRVVGIAVGS 221 (329)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhCC-C----CeEEEEEecC
Confidence 456677899999999999999998777 4 6889999865
No 264
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=26.04 E-value=2.3e+02 Score=25.89 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
.+|.-|.+... ..+..+=++.|+|.++..|..++++..| + ++.+.||.-
T Consensus 204 ttg~EI~eq~~--~~~D~vV~~vGtGGt~aGv~~~lk~~~p-~----~kVigVep~ 252 (368)
T PLN02556 204 TTGPEIWEDTL--GQVDIFVMGIGSGGTVSGVGKYLKSKNP-N----VKIYGVEPA 252 (368)
T ss_pred HHHHHHHHhcC--CCCCEEEEcCCcchHHHHHHHHHHHhCC-C----CEEEEEeeC
Confidence 56777766542 2457788999999999999999998776 3 578888873
No 265
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=25.83 E-value=82 Score=29.42 Aligned_cols=40 Identities=28% Similarity=0.506 Sum_probs=34.0
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 128 SVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 128 ~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
..+..|+=.|+|||--...|=+|+++..| .++.+.||...
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~-----~~kVv~vdp~~ 249 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNP-----NIKVVGVDPQE 249 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCC-----CCEEEEeCCCc
Confidence 55678999999999999999999999987 36788888754
No 266
>PRK11761 cysM cysteine synthase B; Provisional
Probab=25.24 E-value=4.6e+02 Score=22.86 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
.++|.-|.+.... .+..+=++.|+|.++..|..++++..| .++.+.||..
T Consensus 154 ~t~~~Ei~eq~~~--~~d~iv~~vG~Gg~~~Gi~~~lk~~~~-----~~kvigVep~ 203 (296)
T PRK11761 154 ETTGPEIWRQTEG--RITHFVSSMGTTGTIMGVSRYLKEQNP-----AVQIVGLQPE 203 (296)
T ss_pred hchHHHHHHhcCC--CCCEEEecCCcHHHHHHHHHHHHHhCC-----CCEEEEEecC
Confidence 5788877776632 346677889999999999999998765 3688888884
No 267
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=25.06 E-value=6.1e+02 Score=24.23 Aligned_cols=51 Identities=29% Similarity=0.337 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcc
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSL 173 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~ 173 (186)
++|.-|.+... .++..+=++.|+|.++..|..++++..| .++.+.||....
T Consensus 154 tig~EI~~q~~--~~~D~vvvpvGgGGliaGia~~lk~~~p-----~~kVIgVep~~~ 204 (499)
T TIGR01124 154 TLALEILRQVA--NPLDAVFVPVGGGGLAAGVAALIKQLMP-----EIKVIGVEPTDS 204 (499)
T ss_pred HHHHHHHHhCC--CCCCEEEEccCccHHHHHHHHHHHHhCC-----CCEEEEEEECCC
Confidence 46666666653 2456777889999999999999998776 368999998443
No 268
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=24.83 E-value=97 Score=29.10 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=26.6
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHH
Q 029895 132 KIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRD 177 (186)
Q Consensus 132 ~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~ 177 (186)
.+.++|||.| .|+|.|-+.--- .|+.|||+..=.++
T Consensus 120 ~~~~LgCGKG---GDLlKw~kAgI~-------~~igiDIAevSI~q 155 (389)
T KOG1975|consen 120 DVLDLGCGKG---GDLLKWDKAGIG-------EYIGIDIAEVSINQ 155 (389)
T ss_pred ccceeccCCc---ccHhHhhhhccc-------ceEeeehhhccHHH
Confidence 5677999998 478888654332 69999998766554
No 269
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.75 E-value=4e+02 Score=21.96 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEec
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEi 170 (186)
.+|..|.+.+... .+..+=+..|+|.++..+..++++..| ..+.+.||.
T Consensus 140 ~~~~Ei~~q~~~~-~~d~ivvp~GtGg~~~G~~~~~~~~~~-----~~~ii~v~~ 188 (244)
T cd00640 140 TIGLEILEQLGGQ-KPDAVVVPVGGGGNIAGIARALKELLP-----NVKVIGVEP 188 (244)
T ss_pred HHHHHHHHHcCCC-CCCEEEEecCccHHHHHHHHHHHHhCC-----CCEEEEEee
Confidence 4555555555321 345667888999999999999988765 356776665
No 270
>PRK07476 eutB threonine dehydratase; Provisional
Probab=23.82 E-value=3.8e+02 Score=23.52 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
..+|.-|.+... ....+=++.|+|.++..|..+++...| .++.+.||.+.
T Consensus 155 ~t~~~Ei~~Q~~---~~d~iv~~vG~GG~~~Gv~~~~k~~~~-----~~~vigVe~~~ 204 (322)
T PRK07476 155 GTIGLEILEALP---DVATVLVPLSGGGLASGVAAAVKAIRP-----AIRVIGVSMER 204 (322)
T ss_pred hHHHHHHHHhCc---CCCEEEEEcChHHHHHHHHHHHHHhCC-----CCEEEEEEECC
Confidence 366666666552 234466799999999999999998776 36899999853
No 271
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=23.76 E-value=1.1e+02 Score=24.20 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=16.8
Q ss_pred EecCCchhHHHHHHHHHH
Q 029895 135 EIGGGSGTCAKGVMDYIM 152 (186)
Q Consensus 135 EiGaG~GtLA~dIL~~l~ 152 (186)
++|+|.=||++.+...+.
T Consensus 30 ~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 899999999999999874
No 272
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=23.63 E-value=72 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=17.9
Q ss_pred CCCCceEEEecCCchhHHHHH
Q 029895 127 LSVPLKIYEIGGGSGTCAKGV 147 (186)
Q Consensus 127 ~~~~l~IvEiGaG~GtLA~dI 147 (186)
.+....|-++|||.+.+|..+
T Consensus 178 r~~~~vIaD~GCGEakiA~~~ 198 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIASSE 198 (325)
T ss_pred CcCceEEEecccchhhhhhcc
Confidence 477789999999999999743
No 273
>PLN02970 serine racemase
Probab=23.44 E-value=4.4e+02 Score=23.33 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 116 GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 116 ~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
++|.-|.+.+.. +..+=++.|+|.++..|..++++..| .++.+.||...
T Consensus 164 t~g~Ei~~ql~~---~D~vv~~vG~GG~~~Gi~~~lk~~~~-----~~kvi~Vep~~ 212 (328)
T PLN02970 164 TIALEFLEQVPE---LDVIIVPISGGGLISGIALAAKAIKP-----SIKIIAAEPKG 212 (328)
T ss_pred HHHHHHHHhccC---CCEEEEeeCchHHHHHHHHHHHhcCC-----CCEEEEEEECC
Confidence 567777666642 34555689999999999999998776 47899999853
No 274
>PRK08639 threonine dehydratase; Validated
Probab=23.32 E-value=2.8e+02 Score=25.55 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
.++|.-|.+.+.....+..+=++.|+|.++..|..++++..| + ++.+.||..
T Consensus 164 ~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p-~----~~vigVep~ 215 (420)
T PRK08639 164 GTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSP-K----TKIIGVEPA 215 (420)
T ss_pred hHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCC-C----CEEEEEEEC
Confidence 356777776663210245666788899999999999998877 3 688889875
No 275
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.21 E-value=1e+02 Score=30.01 Aligned_cols=73 Identities=29% Similarity=0.406 Sum_probs=43.1
Q ss_pred ccccChHHH---HHHHHHHhhhcC-Cc---cccccccchHHHH-HHHHHHHHHHhC--CCCCceEEEecCCchhHHHHHH
Q 029895 79 NQLQGRKAY---MKHVDKIYKQSE-IS---WFTPVELFKPWYA-HGIAEAIMRTAN--LSVPLKIYEIGGGSGTCAKGVM 148 (186)
Q Consensus 79 ~~l~~~~~y---~~~~~~~y~~~~-~d---F~Ts~eifsp~Fg-~~lA~~i~~~~~--~~~~l~IvEiGaG~GtLA~dIL 148 (186)
+.|.+|.-| .+.+.+.|-.-- +. |--.|.=..|.|- -.||.++.+.+. +..+..-+++|||+| +...+|
T Consensus 151 dal~dqe~yil~yK~l~ed~~~~ylphik~~~E~p~p~kpiyed~~iaiylh~lvsSv~~~p~~f~d~gcgng-llvhll 229 (529)
T KOG3790|consen 151 DALLDQESYILTYKHLREDYGQRYLPHIKGWTENPNPQKPIYEDCGIAIYLHELVSSVPSKPNKFVDIGCGNG-LLVHLL 229 (529)
T ss_pred ccccchHHHHHhHHHHHHhhhhhhhhhhcccccCCCCCccccccchHHHHHHHHHhcccccccchhccccCch-hHHHHH
Confidence 456666666 334444443110 12 2223331256773 278888888883 446788999999999 666666
Q ss_pred HHHH
Q 029895 149 DYIM 152 (186)
Q Consensus 149 ~~l~ 152 (186)
++..
T Consensus 230 na~g 233 (529)
T KOG3790|consen 230 NAIG 233 (529)
T ss_pred HHHH
Confidence 6543
No 276
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.18 E-value=4.3e+02 Score=22.31 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=30.3
Q ss_pred CCCceEE-EecCCch-----hHHHHHHHHHHHhCcccccccceEEEEecCcchHHHH
Q 029895 128 SVPLKIY-EIGGGSG-----TCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDT 178 (186)
Q Consensus 128 ~~~l~Iv-EiGaG~G-----tLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q 178 (186)
+.++.|+ |+|.|+- .++..|++++.+.. ....+++...+.+.+..
T Consensus 110 ~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~------~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 110 SRSLVILDELGRGTSTHDGIAIAYATLHYLLEEK------KCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhcc------CCeEEEEcccHHHHHHH
Confidence 3445555 9999984 34678999987751 23577777777777654
No 277
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=22.98 E-value=4.8e+02 Score=22.30 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
.+++.-|.+.++. .+.-+=+..|+|.++..|..++++..| .++.+.||...
T Consensus 147 ~t~~~Ei~~ql~~--~~d~vv~~~G~Gg~~~Gi~~~~~~~~~-----~~~vi~Ve~~~ 197 (291)
T cd01561 147 ETTAPEIWEQLDG--KVDAFVAGVGTGGTITGVARYLKEKNP-----NVRIVGVDPVG 197 (291)
T ss_pred HHHHHHHHHHcCC--CCCEEEEeCChHHHHHHHHHHHHHhCC-----CCEEEEEecCC
Confidence 4788888887743 345566788999999999999998765 35788888764
No 278
>PRK10646 ADP-binding protein; Provisional
Probab=22.91 E-value=1.4e+02 Score=24.27 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=23.5
Q ss_pred EecCCchhHHHHHHHHHHHhCcccccccceEEEEec
Q 029895 135 EIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEI 170 (186)
Q Consensus 135 EiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEi 170 (186)
++|||.=||++.|++.+--.. . -..=+|+||..
T Consensus 36 dLGaGKTtf~rgl~~~Lg~~~--~-V~SPTFtlv~~ 68 (153)
T PRK10646 36 DLGAGKTTFSRGFLQALGHQG--N-VKSPTYTLVEP 68 (153)
T ss_pred CCCCCHHHHHHHHHHHcCCCC--C-CCCCCEeeEEE
Confidence 899999999999999984321 1 12236777654
No 279
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=22.86 E-value=1.1e+02 Score=27.21 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=40.0
Q ss_pred ChHHH--HHHHHHHhhhcCCccccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccccc
Q 029895 83 GRKAY--MKHVDKIYKQSEISWFTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVY 160 (186)
Q Consensus 83 ~~~~y--~~~~~~~y~~~~~dF~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y 160 (186)
|.++| .+++.+...+.-+..-...-. ...|=.-..+++. ..-.--+.++||+|=-| +.++-+..++..| +
T Consensus 24 Gkdnf~vDR~~a~~~~~~~P~~~~~ar~-nR~Fl~RaVr~la---~~~GIrQFLDlGsGlPT-~~nvHevAq~~~P-~-- 95 (267)
T PF04672_consen 24 GKDNFAVDREAAERLLAAAPEIREAARA-NRAFLRRAVRYLA---EEAGIRQFLDLGSGLPT-AGNVHEVAQRVAP-D-- 95 (267)
T ss_dssp -SS--HHHHHHHHHHHHHSTTHHHHHHH-HHHHHHHHHHHHH---CTT---EEEEET--S---SS-HHHHHHHH-T-T--
T ss_pred CccCCHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHH---HhcCcceEEEcccCCCC-CCCHhHHHHhhCC-C--
Confidence 44445 566666665554344333333 3333222222322 22233489999999877 5577776666777 4
Q ss_pred ccceEEEEecCcchHH
Q 029895 161 NNMTYISVEIQSLTGR 176 (186)
Q Consensus 161 ~~l~Y~iVEiSp~L~~ 176 (186)
.+.+-||..|--..
T Consensus 96 --aRVVYVD~DPvv~a 109 (267)
T PF04672_consen 96 --ARVVYVDNDPVVLA 109 (267)
T ss_dssp ---EEEEEESSHHHHH
T ss_pred --ceEEEECCCchHHH
Confidence 47888888886544
No 280
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=22.74 E-value=2.9e+02 Score=25.23 Aligned_cols=51 Identities=18% Similarity=0.439 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
.++|.-|.+..+. ++..+=++.|+|.++..|..++++..| .++.+.||..-
T Consensus 157 ~t~~~Ei~~q~~~--~~d~vv~~vG~Gg~~~G~~~~~~~~~~-----~~~vi~ve~~~ 207 (454)
T TIGR01137 157 DGTGPEILEQCEG--KLDMFVAGAGTGGTITGIARYLKESNP-----KCRIVGADPEG 207 (454)
T ss_pred HhhHHHHHHHhCC--CCCEEEEecCchHHHHHHHHHHHhhCC-----CCEEEEEecCC
Confidence 4567777666632 355677899999999999999998766 36788888753
No 281
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.66 E-value=1.3e+02 Score=28.33 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchHHHHHHh
Q 029895 113 YAHGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTGRDTERN 181 (186)
Q Consensus 113 Fg~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~~~Q~~~ 181 (186)
=.+.+..++.+..+....-+++|+=||.|+++.-+-.. . .+.+-||++|...+.-+++
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~----~-------~~V~gvEi~~~aV~~A~~N 334 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR----V-------KKVHGVEISPEAVEAAQEN 334 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc----C-------CEEEEEecCHHHHHHHHHH
Confidence 34555566666665555568999999999999876522 1 2578899999988875444
No 282
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=22.46 E-value=3.2e+02 Score=25.11 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=28.3
Q ss_pred CceEEEecCCchhHHHHHHHHHH----HhCccc--------ccccceEEEEecCc
Q 029895 130 PLKIYEIGGGSGTCAKGVMDYIM----LNAPER--------VYNNMTYISVEIQS 172 (186)
Q Consensus 130 ~l~IvEiGaG~GtLA~dIL~~l~----~~~P~~--------~y~~l~Y~iVEiSp 172 (186)
..+|+-||+|-|.=-..+-.+++ +..+ + -..+++.++|||.+
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s-~~~~~~~~~~~~~l~itlvDiAd 140 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLS-KSPSGVSLSSPPSLSITLVDIAD 140 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCC-cccccccccCCCcceEEEEEecC
Confidence 47999999999776666666662 2111 1 12347999999865
No 283
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=21.79 E-value=1.2e+02 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh----CCCC-CceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCcchH
Q 029895 114 AHGIAEAIMRTA----NLSV-PLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQSLTG 175 (186)
Q Consensus 114 g~~lA~~i~~~~----~~~~-~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp~L~ 175 (186)
.+.+-+++.... .... +.+++|||+|.|-=+-=+. + ..| ..++++||....=+
T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLA--I--~~p-----~~~vtLles~~Kk~ 104 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLA--I--AFP-----DLKVTLLESLGKKI 104 (215)
T ss_pred HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHH--H--hcc-----CCcEEEEccCchHH
Confidence 455566665544 1122 5799999999996433221 2 134 24689999876533
No 284
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=21.78 E-value=1.6e+02 Score=27.48 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCceEEEecCCchhHHHHHHH
Q 029895 129 VPLKIYEIGGGSGTCAKGVMD 149 (186)
Q Consensus 129 ~~l~IvEiGaG~GtLA~dIL~ 149 (186)
.+..|+==|||.|+||.+|..
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~ 170 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLAC 170 (369)
T ss_pred cCceEEecCCCchhHHHHHHH
Confidence 478999999999999999843
No 285
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=21.17 E-value=50 Score=30.32 Aligned_cols=37 Identities=32% Similarity=0.402 Sum_probs=21.3
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCCCCceEEEecCCc
Q 029895 103 FTPVELFKPWYAHGIAEAIMRTANLSVPLKIYEIGGGS 140 (186)
Q Consensus 103 ~Ts~eifsp~Fg~~lA~~i~~~~~~~~~l~IvEiGaG~ 140 (186)
=+++|+ .-.=+++-.+-.+.+-+.+.|+.|+++|+|+
T Consensus 109 gv~V~i-gGvEAemAi~GALTTPGt~~PlaIlDmG~GS 145 (332)
T PF08841_consen 109 GVPVEI-GGVEAEMAILGALTTPGTDKPLAILDMGGGS 145 (332)
T ss_dssp TSEEEE-ECEHHHHHHHHHTTSTT--SSEEEEEE-SSE
T ss_pred CCceEE-ccccHHHHHhcccCCCCCCCCeEEEecCCCc
Confidence 355555 4444444444444444678899999999997
No 286
>PRK08638 threonine dehydratase; Validated
Probab=20.92 E-value=5.4e+02 Score=22.97 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecC
Q 029895 115 HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQ 171 (186)
Q Consensus 115 ~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiS 171 (186)
.++|.-|.+.... +.-+=++.|+|.+...+..++++..| .++.+.||..
T Consensus 163 ~t~a~Ei~~q~~~---~d~vv~~vG~Gg~~~Gv~~~lk~~~~-----~~~vigVep~ 211 (333)
T PRK08638 163 GTIGLEILEDLWD---VDTVIVPIGGGGLIAGIAVALKSINP-----TIHIIGVQSE 211 (333)
T ss_pred cHHHHHHHhhcCC---CCEEEEEeChhHHHHHHHHHHHHhCC-----CCEEEEEEEC
Confidence 3466666665532 34455688999999999999998765 4789999974
No 287
>PHA03297 envelope glycoprotein L; Provisional
Probab=20.51 E-value=36 Score=28.47 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=20.8
Q ss_pred HhCCCCCceEEEecCCchhHHHHHH
Q 029895 124 TANLSVPLKIYEIGGGSGTCAKGVM 148 (186)
Q Consensus 124 ~~~~~~~l~IvEiGaG~GtLA~dIL 148 (186)
+|++.++-+|+|..||+|-.|+.-|
T Consensus 34 tw~~gepkrileascgsgpimkgql 58 (185)
T PHA03297 34 TWGPGEPKRILEASCGSGPIMKGQL 58 (185)
T ss_pred eeCCCCchhhhhhccCCCccccccc
Confidence 4567888899999999999987644
No 288
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=20.29 E-value=5.6e+02 Score=22.03 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=40.6
Q ss_pred HHHHH-HHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCcccccccceEEEEecCc
Q 029895 111 PWYAH-GIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNNMTYISVEIQS 172 (186)
Q Consensus 111 p~Fg~-~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~l~Y~iVEiSp 172 (186)
+..|. .+|.-|.+..+. .+..+=+..|+|.++..|..++++..| .++.+.||...
T Consensus 145 ~~~g~~t~~~Ei~~q~~~--~~d~vv~~vG~Gg~~~Gi~~~~~~~~~-----~~~vi~Ve~~~ 200 (298)
T TIGR01139 145 PEIHRKTTGPEIWRDTDG--KLDAFVAGVGTGGTITGVGEVLKEQKP-----NIKIVAVEPAE 200 (298)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEecchhHhHHHHHHHHHhcCC-----CCEEEEEecCC
Confidence 45454 577777777632 244566799999999999999998766 36888898853
No 289
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=77 Score=31.87 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCCCccccCCCc-cccCCC
Q 029895 46 VRDFIHSALYHPKHGYFSQRSR-SVGVLD 73 (186)
Q Consensus 46 frdFM~~aLY~p~~GYY~~~~~-~iG~~G 73 (186)
.-+||..-||+|+.|||++... .-|..|
T Consensus 301 i~~~l~rel~sp~ggFyss~DAD~~g~EG 329 (667)
T COG1331 301 ILDYLLRELYSPEGGFYSSLDADSDGEEG 329 (667)
T ss_pred HHHHHHHHhcCCCCceeecccccCcccCC
Confidence 3479999999999999998553 455455
No 290
>PRK06260 threonine synthase; Validated
Probab=20.03 E-value=5.1e+02 Score=23.59 Aligned_cols=83 Identities=7% Similarity=0.040 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhcCCccccccccchHHHH---HHHHHHHHHHhCCCCCceEEEecCCchhHHHHHHHHHHHhCccccccc
Q 029895 86 AYMKHVDKIYKQSEISWFTPVELFKPWYA---HGIAEAIMRTANLSVPLKIYEIGGGSGTCAKGVMDYIMLNAPERVYNN 162 (186)
Q Consensus 86 ~y~~~~~~~y~~~~~dF~Ts~eifsp~Fg---~~lA~~i~~~~~~~~~l~IvEiGaG~GtLA~dIL~~l~~~~P~~~y~~ 162 (186)
+..+.+.+.-++. .|+-.... .|+.- .++|..|.+.++.. .+..+=+..|+|.++..+..++++..+.-+-.+
T Consensus 174 ~~~~~a~~~~~~~--g~y~~~~~-np~~~~G~~t~a~Ei~eQl~~~-~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~ 249 (397)
T PRK06260 174 DALDMVVELAKEG--KIYLLNSI-NPFRLEGQKTIGFEIADQLGWE-VPDRVVLPVGNAGNISAIWKGFKELVELGIIDK 249 (397)
T ss_pred HHHHHHHHHHhhC--CEEeecCC-CchhhcchhhHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCC
Confidence 4444455544443 35555444 66552 45666666665321 345667899999999999999987642011122
Q ss_pred -ceEEEEecCc
Q 029895 163 -MTYISVEIQS 172 (186)
Q Consensus 163 -l~Y~iVEiSp 172 (186)
.+.+.||...
T Consensus 250 ~prii~Vq~~g 260 (397)
T PRK06260 250 LPKMTGIQAEG 260 (397)
T ss_pred CCeEEEEecCC
Confidence 3778888754
Done!