Query 029896
Match_columns 185
No_of_seqs 106 out of 297
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 88.1 7.3 0.00025 29.7 11.1 68 3-91 5-74 (142)
2 4i95_A Putative uncharacterize 79.4 18 0.00062 27.4 11.5 74 5-98 7-81 (142)
3 3pjy_A Hypothetical signal pep 19.5 58 0.002 24.1 2.3 16 153-168 69-84 (136)
4 3m7a_A Uncharacterized protein 19.3 59 0.002 24.3 2.3 16 153-168 83-98 (140)
5 3hty_A Hypothetical protein BT 12.6 3.6E+02 0.012 18.7 4.8 26 153-180 68-93 (94)
6 2bkf_A Zinc-finger protein NBR 12.2 1E+02 0.0034 21.4 1.7 10 153-162 45-54 (87)
7 1z8m_A Conserved hypothetical 11.9 62 0.0021 20.9 0.6 10 11-20 62-71 (88)
8 3sb1_A Hydrogenase expression 9.6 1.4E+02 0.005 22.8 2.0 18 6-23 106-123 (160)
9 2kyw_A Adhesion exoprotein; st 9.5 1.1E+02 0.0037 20.8 1.1 10 153-162 4-13 (87)
10 2z0r_A Putative uncharacterize 9.0 1.2E+02 0.0041 21.7 1.2 32 2-36 17-48 (103)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=88.08 E-value=7.3 Score=29.67 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=47.2
Q ss_pred CCCCcCCcccEEEEE-EecCcchhhHHHhhhcCCc-eeeceeeEEEeeecCCCCceEEEEEEcCCCcccccccCeEEEEE
Q 029896 3 EPIDLVKLDGTWRLQ-YTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVS 80 (185)
Q Consensus 3 ~p~~~~~L~G~WrL~-yTt~~~~~~ll~~~~~lp~-~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~p~~~~~~~g~~l~v~ 80 (185)
+.....-|.|-|+|. |-+... ..|+ ++.+..+-+|. ++|++.|++-.. . .++.+...
T Consensus 5 ~~~~~~~L~GvWQ~c~y~~~~~---------~~~~~l~~s~~~KIlS-----~DgtF~N~~m~~--~-----~~aiIt~y 63 (142)
T 4gzv_A 5 TKFKAADLKGIWQLCHYVSESP---------DVPGALKPSNTFKVLS-----DDGRIVNFTIIP--G-----ADAIITGY 63 (142)
T ss_dssp CGGGSCCCCEEEEEEEEEESST---------TSCCEEEEEEEEEEEC-----TTSEEEEEECCT--T-----SCCEEEEE
T ss_pred cccccccceEEeEEeeEeecCC---------CCCceEeecCceEEEC-----CCCcEEEEEEeC--C-----CCcEEEEe
Confidence 445667899999988 444432 2233 45566677666 589999999543 2 24678899
Q ss_pred EEEEEccCceE
Q 029896 81 AKFDVVSVRNI 91 (185)
Q Consensus 81 A~~e~~s~~Ri 91 (185)
++|+..|++..
T Consensus 64 GtY~l~SD~~Y 74 (142)
T 4gzv_A 64 GTYKQLTDDSY 74 (142)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEecCCCee
Confidence 99999999843
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=79.38 E-value=18 Score=27.37 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=52.4
Q ss_pred CCcCCcccEEEEEEecCcchhhHHHhhhcCCc-eeeceeeEEEeeecCCCCceEEEEEEcCCCcccccccCeEEEEEEEE
Q 029896 5 IDLVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKF 83 (185)
Q Consensus 5 ~~~~~L~G~WrL~yTt~~~~~~ll~~~~~lp~-~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~p~~~~~~~g~~l~v~A~~ 83 (185)
....-|.|-|+|..=.+.+ -..|. ++-+..+-+|. +++++.|+.-. |. .++.....++|
T Consensus 7 ~~~~~L~GvWQ~C~y~s~~--------pd~~g~L~psn~lKIlS-----dDgtF~Ni~m~--~~-----~~aiIt~~GtY 66 (142)
T 4i95_A 7 FEPAHLQGIWQLCHYVSEN--------PDIPGVLKPSNTFKVLS-----DDGRIVNFTIR--PG-----TDAIITGYGTY 66 (142)
T ss_dssp CCCCSCCEEEEEEEEECSS--------TTSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEE
T ss_pred cCcccceeEeEEEEEecCC--------CCCceEeccCccEEEEc-----CCCcEEEEEEe--cC-----CCcEEEEeEEE
Confidence 3456799999998655543 12343 45677788776 58999999887 32 24688999999
Q ss_pred EEccCceEEEEEEEE
Q 029896 84 DVVSVRNIYLQFEEV 98 (185)
Q Consensus 84 e~~s~~Ri~v~F~~~ 98 (185)
+..|+....=.-++.
T Consensus 67 ~~~SD~~Y~E~IeKn 81 (142)
T 4i95_A 67 RQISAAAYKESIEKN 81 (142)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EecCCcceeeeeccc
Confidence 999998665555554
No 3
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=19.48 E-value=58 Score=24.09 Aligned_cols=16 Identities=0% Similarity=0.050 Sum_probs=12.9
Q ss_pred EEEEEEecCCeEEEee
Q 029896 153 LYYLSYLDNNMLLGRA 168 (185)
Q Consensus 153 wld~TYLDedlRI~Rg 168 (185)
-+|+.|||+|-||..=
T Consensus 69 PLDiiFld~~g~Vv~i 84 (136)
T 3pjy_A 69 PLDMLFIASDGTIRTI 84 (136)
T ss_dssp CEEEEEECTTSBEEEE
T ss_pred ceEEEEECCCCEEEEE
Confidence 4999999999877543
No 4
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=19.27 E-value=59 Score=24.26 Aligned_cols=16 Identities=0% Similarity=-0.081 Sum_probs=13.0
Q ss_pred EEEEEEecCCeEEEee
Q 029896 153 LYYLSYLDNNMLLGRA 168 (185)
Q Consensus 153 wld~TYLDedlRI~Rg 168 (185)
-+|+.|||+|-||..=
T Consensus 83 PLDiiFid~dg~Vv~i 98 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNI 98 (140)
T ss_dssp CEEEEEECTTSBEEEE
T ss_pred ceEEEEECCCCeEEEE
Confidence 4899999999887543
No 5
>3hty_A Hypothetical protein BT_0869; NP_809782.1, structural genomics, joint cente structural genomics, JCSG; HET: MSE GOL; 1.95A {Bacteroides thetaiotaomicron vpi-5482}
Probab=12.63 E-value=3.6e+02 Score=18.69 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.0
Q ss_pred EEEEEEecCCeEEEeecCCCcEEEEEec
Q 029896 153 LYYLSYLDNNMLLGRAVGGGGVFVFTKA 180 (185)
Q Consensus 153 wld~TYLDedlRI~Rg~d~G~vFVl~R~ 180 (185)
.|+|-.|+.|-.+=.. +|..|++.|.
T Consensus 68 Tf~I~~l~~dsL~L~~--~~~~~~Y~r~ 93 (94)
T 3hty_A 68 TMDIKRLTADSLVLDN--QGMEIRYAKQ 93 (94)
T ss_dssp EEEEEEECSSEEEEEE--TTEEEEEEEC
T ss_pred EEEEEecCCceEEEEc--CCeEEEEEec
Confidence 5889999999888744 7899999995
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=12.19 E-value=1e+02 Score=21.38 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=8.5
Q ss_pred EEEEEEecCC
Q 029896 153 LYYLSYLDNN 162 (185)
Q Consensus 153 wld~TYLDed 162 (185)
.+.++|.|||
T Consensus 45 ~~~ikY~DEe 54 (87)
T 2bkf_A 45 TIQIKYLDEE 54 (87)
T ss_dssp SEEEEEECTT
T ss_pred ceEEEEEcCC
Confidence 3799999986
No 7
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=11.85 E-value=62 Score=20.89 Aligned_cols=10 Identities=20% Similarity=0.072 Sum_probs=6.5
Q ss_pred ccEEEEEEec
Q 029896 11 DGTWRLQYTS 20 (185)
Q Consensus 11 ~G~WrL~yTt 20 (185)
+|.|||+|+=
T Consensus 62 ~~dyrliY~i 71 (88)
T 1z8m_A 62 KPDVLLVYLV 71 (88)
T ss_dssp STTCEEEEEE
T ss_pred CCCEEEEEEE
Confidence 5667777753
No 8
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=9.56 E-value=1.4e+02 Score=22.76 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=13.8
Q ss_pred CcCCcccEEEEEEecCcc
Q 029896 6 DLVKLDGTWRLQYTSAPD 23 (185)
Q Consensus 6 ~~~~L~G~WrL~yTt~~~ 23 (185)
....+.|.|+++|..+.+
T Consensus 106 qET~~~GVWrV~~~ns~~ 123 (160)
T 3sb1_A 106 DETAFPGVWWIIHRNAQG 123 (160)
T ss_dssp EECSSTTEEEEEEECTTS
T ss_pred EEecCCCEEEEEEECCCC
Confidence 356688999999888765
No 9
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=9.55 E-value=1.1e+02 Score=20.84 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=8.0
Q ss_pred EEEEEEecCC
Q 029896 153 LYYLSYLDNN 162 (185)
Q Consensus 153 wld~TYLDed 162 (185)
...++|+|+|
T Consensus 4 ~i~I~YVDDD 13 (87)
T 2kyw_A 4 DATITYVDDD 13 (87)
T ss_dssp EEEEEEEETT
T ss_pred ceeEEEEecC
Confidence 3579999986
No 10
>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}
Probab=9.04 E-value=1.2e+02 Score=21.67 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=25.4
Q ss_pred CCCCCcCCcccEEEEEEecCcchhhHHHhhhcCCc
Q 029896 2 GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPF 36 (185)
Q Consensus 2 ~~p~~~~~L~G~WrL~yTt~~~~~~ll~~~~~lp~ 36 (185)
|+.+-+..+.|+--|+|||+.....++ ...|-
T Consensus 17 gEhl~L~~lg~rlAliwTs~~~A~~f~---~~~p~ 48 (103)
T 2z0r_A 17 GEHLVVEALGERLSGIWTSRELAEAFL---AHHPH 48 (103)
T ss_dssp TCCCEEEETTEEEEEEBSCHHHHHHHH---HTSCS
T ss_pred CceeEEeccCCceEEEEechHHHHHHH---hhCCc
Confidence 566778889999999999998877665 35664
Done!