Query 029896
Match_columns 185
No_of_seqs 106 out of 297
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 08:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029896.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029896hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gu3a1 d.17.1.6 (A:99-161) Un 31.2 12 0.00087 22.9 2.0 14 153-166 33-46 (63)
2 d1kwga1 b.71.1.1 (A:591-644) A 22.0 32 0.0023 20.2 2.7 18 159-178 4-21 (54)
3 d1wzaa1 b.71.1.1 (A:437-515) B 21.9 11 0.00083 23.2 0.5 20 3-22 33-52 (79)
4 d1wp0a1 c.47.1.10 (A:138-297) 21.5 12 0.00085 24.9 0.6 18 2-19 10-27 (160)
5 d1nwza_ d.110.3.1 (A:) Photoac 18.3 31 0.0023 22.2 2.3 19 162-180 106-124 (125)
6 d2b7ka1 c.47.1.10 (A:111-279) 17.4 13 0.00093 24.5 -0.0 19 2-20 16-34 (169)
7 d1gt1a_ b.60.1.1 (A:) Odorant- 14.6 40 0.0029 22.5 2.2 21 3-23 5-25 (158)
8 d1b56a_ b.60.1.2 (A:) Epiderma 14.1 42 0.0031 22.6 2.1 17 7-23 2-18 (133)
9 d2hnxa1 b.60.1.2 (A:1-131) Adi 13.9 42 0.003 22.5 2.0 17 7-23 1-17 (131)
10 d2bkfa1 d.15.2.2 (A:1-85) Next 13.5 41 0.003 21.5 1.7 9 154-162 44-52 (85)
No 1
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=31.21 E-value=12 Score=22.94 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.2
Q ss_pred EEEEEEecCCeEEE
Q 029896 153 LYYLSYLDNNMLLG 166 (185)
Q Consensus 153 wld~TYLDedlRI~ 166 (185)
-||+||+|++=|.+
T Consensus 33 vWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 33 LWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEEEEECTTSCEE
T ss_pred EEEEEEEeCCCCEE
Confidence 69999999875543
No 2
>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=22.04 E-value=32 Score=20.18 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=13.9
Q ss_pred ecCCeEEEeecCCCcEEEEE
Q 029896 159 LDNNMLLGRAVGGGGVFVFT 178 (185)
Q Consensus 159 LDedlRI~Rg~d~G~vFVl~ 178 (185)
|.|.+||.|- ++=+|+|.
T Consensus 4 LPeglRvrrR--G~l~fafN 21 (54)
T d1kwga1 4 LPEGLRLRRR--GTWVFAFN 21 (54)
T ss_dssp CCTTEEEEEE--TTEEEEEE
T ss_pred cCCceEEEEE--CCEEEEEe
Confidence 6789999996 45677774
No 3
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=21.92 E-value=11 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=15.7
Q ss_pred CCCCcCCcccEEEEEEecCc
Q 029896 3 EPIDLVKLDGTWRLQYTSAP 22 (185)
Q Consensus 3 ~p~~~~~L~G~WrL~yTt~~ 22 (185)
.|+....-+|.|.|+|.|..
T Consensus 33 rpvkikvasgnwtllfnsgd 52 (79)
T d1wzaa1 33 RPVKIKVASGNWTLLFNSGD 52 (79)
T ss_dssp SCEEEEEESSCEEEEEESSS
T ss_pred CcEEEEEecCcEEEEEccCC
Confidence 35556667899999999875
No 4
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.46 E-value=12 Score=24.91 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.7
Q ss_pred CCCCCcCCcccEEEEEEe
Q 029896 2 GEPIDLVKLDGTWRLQYT 19 (185)
Q Consensus 2 ~~p~~~~~L~G~WrL~yT 19 (185)
|.+++++-+.|+|-|++=
T Consensus 10 G~~vsl~d~~GK~vll~F 27 (160)
T d1wp0a1 10 GERKTDKDYLGQWLLIYF 27 (160)
T ss_dssp SCEEEGGGGTTSEEEEEE
T ss_pred CCEEcHHHhCCCEEEEEE
Confidence 678889999999999963
No 5
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=18.32 E-value=31 Score=22.24 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=14.7
Q ss_pred CeEEEeecCCCcEEEEEec
Q 029896 162 NMLLGRAVGGGGVFVFTKA 180 (185)
Q Consensus 162 dlRI~Rg~d~G~vFVl~R~ 180 (185)
++|+.|..+.+++|||+|+
T Consensus 106 ~v~l~~~~~g~~~~v~V~d 124 (125)
T d1nwza_ 106 KVHMKKALSGDSYWVFVKR 124 (125)
T ss_dssp EEEEEECSSSSEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEEEE
Confidence 3677777668889999985
No 6
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.39 E-value=13 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.7
Q ss_pred CCCCCcCCcccEEEEEEec
Q 029896 2 GEPIDLVKLDGTWRLQYTS 20 (185)
Q Consensus 2 ~~p~~~~~L~G~WrL~yTt 20 (185)
|.+++++.+.|+|.|++--
T Consensus 16 G~~vsl~~~~GK~vli~f~ 34 (169)
T d2b7ka1 16 GNEFTEKNLLGKFSIIYFG 34 (169)
T ss_dssp SCEEEGGGGTTSCEEEEEE
T ss_pred CCEECHHHHCCCEEEEEEe
Confidence 6678899999999998633
No 7
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.63 E-value=40 Score=22.48 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=17.0
Q ss_pred CCCCcCCcccEEEEEEecCcc
Q 029896 3 EPIDLVKLDGTWRLQYTSAPD 23 (185)
Q Consensus 3 ~p~~~~~L~G~WrL~yTt~~~ 23 (185)
+..|.+.+.|+|-.++..+..
T Consensus 5 ~~~d~~k~~G~Wy~ia~As~~ 25 (158)
T d1gt1a_ 5 AEQNLSELSGPWRTVYIGSTN 25 (158)
T ss_dssp CCCCCGGGCEEEEEEEEEESS
T ss_pred ccCChHHCCEEeEEEEEEECC
Confidence 457889999999999876654
No 8
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.05 E-value=42 Score=22.60 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=13.4
Q ss_pred cCCcccEEEEEEecCcc
Q 029896 7 LVKLDGTWRLQYTSAPD 23 (185)
Q Consensus 7 ~~~L~G~WrL~yTt~~~ 23 (185)
.+.|.|+|+|.=+-+.|
T Consensus 2 ~~~l~Gtwkl~~seNfd 18 (133)
T d1b56a_ 2 VQQLEGRWRLVDSKGFD 18 (133)
T ss_dssp GGGGCEEEEEEECCSHH
T ss_pred hHHceEEEEEEeccCHH
Confidence 46899999998665555
No 9
>d2hnxa1 b.60.1.2 (A:1-131) Adipocyte lipid-binding protein, ALBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.88 E-value=42 Score=22.54 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.3
Q ss_pred cCCcccEEEEEEecCcc
Q 029896 7 LVKLDGTWRLQYTSAPD 23 (185)
Q Consensus 7 ~~~L~G~WrL~yTt~~~ 23 (185)
++.+.|+|+|.-+-+.|
T Consensus 1 ~~~F~Gtwkl~~sENfd 17 (131)
T d2hnxa1 1 CDAFVGTWKLVSSENFD 17 (131)
T ss_dssp GGGGCEEEEEEEEESHH
T ss_pred CCccceEEEEEeccCHH
Confidence 46789999999887776
No 10
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=41 Score=21.54 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=8.2
Q ss_pred EEEEEecCC
Q 029896 154 YYLSYLDNN 162 (185)
Q Consensus 154 ld~TYLDed 162 (185)
+.+.|+|+|
T Consensus 44 ~~lkY~Ddd 52 (85)
T d2bkfa1 44 IQIKYLDEE 52 (85)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEcCC
Confidence 899999986
Done!