Your job contains 1 sequence.
>029897
MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA
NREEVDSRSVFVGNQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESE
LHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMR
YSPYY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029897
(185 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 605 5.7e-59 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 598 3.2e-58 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 293 6.6e-26 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 287 2.9e-25 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 286 3.6e-25 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 281 1.2e-24 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 280 1.6e-24 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 280 1.6e-24 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 280 1.6e-24 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 280 1.6e-24 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 280 1.6e-24 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 280 1.6e-24 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 279 2.0e-24 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 279 2.0e-24 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 278 2.6e-24 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 278 2.6e-24 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 277 3.3e-24 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 277 3.3e-24 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 263 1.0e-22 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 262 1.3e-22 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 259 2.6e-22 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 259 2.6e-22 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 251 1.9e-21 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 243 1.3e-20 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 226 8.3e-19 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 217 7.5e-18 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 210 4.1e-17 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 210 4.1e-17 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 198 7.7e-16 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 197 9.8e-16 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 197 9.8e-16 1
SGD|S000001440 - symbol:SGN1 "Cytoplasmic RNA-binding pro... 196 1.3e-15 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 194 2.0e-15 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 194 2.0e-15 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 189 6.9e-15 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 186 1.6e-14 1
WB|WBGene00017140 - symbol:EEED8.12 species:6239 "Caenorh... 184 2.3e-14 1
WB|WBGene00017135 - symbol:EEED8.4 species:6239 "Caenorha... 182 3.8e-14 1
UNIPROTKB|I3LCE0 - symbol:LOC100620185 "Uncharacterized p... 182 5.5e-14 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 173 3.4e-13 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 142 8.5e-11 2
UNIPROTKB|H0YJH9 - symbol:PABPN1 "Polyadenylate-binding p... 144 4.1e-10 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 142 4.7e-09 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 139 9.9e-09 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 137 1.4e-08 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 136 1.6e-08 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 132 3.4e-07 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 130 7.3e-07 1
RGD|619928 - symbol:Pabpn1 "poly(A) binding protein, nucl... 112 1.0e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 107 4.0e-06 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 101 2.1e-05 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 101 2.1e-05 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 100 2.7e-05 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 100 2.7e-05 1
DICTYBASE|DDB_G0287335 - symbol:DDB_G0287335 "RNA-binding... 97 6.2e-05 1
UNIPROTKB|F1P368 - symbol:DAZL "Deleted in azoospermia-li... 114 7.4e-05 1
UNIPROTKB|Q804A9 - symbol:DAZL "Deleted in azoospermia-li... 114 7.4e-05 1
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein... 94 0.00014 1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 109 0.00017 2
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 116 0.00017 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 106 0.00023 2
TAIR|locus:2087685 - symbol:AT3G12640 species:3702 "Arabi... 114 0.00027 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 113 0.00039 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 88 0.00068 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 88 0.00068 1
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 109 0.00094 1
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 124/192 (64%), Positives = 147/192 (76%)
Query: 5 DMDMIETENKQV-ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D+DM ++ V ELD+MK RLKEME+EA ALR+M AKV EM + QDPA+ ++ A +E
Sbjct: 29 DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 87
Query: 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 112
EVD+RSVFVGN QHFQ+CGTV+RVTI TDKFGQPKG+AYVEF++ EAVQE
Sbjct: 88 EVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQE 147
Query: 113 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 172
AL LNESELHGRQLKV KRTNVPG+KQ R RR NP+M Y+ R + P++YSPYGYGK
Sbjct: 148 ALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKA 207
Query: 173 PRFRMPMRYSPY 184
PRFR PMRY PY
Sbjct: 208 PRFRRPMRYMPY 219
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 122/192 (63%), Positives = 142/192 (73%)
Query: 5 DMDMIETENKQV-ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D+DM + V EL +MK RLKEMEEEA ALR+M AKV EM + QDPA+ ++ +E
Sbjct: 25 DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84
Query: 64 EVDSRSVFVGNQ-----------HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 112
EVD+RSV+VGN HFQ+CGTVNRVTI DKFGQPKG+AYVEF++ EAVQE
Sbjct: 85 EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144
Query: 113 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 172
AL LNESELHGRQLKV+ KRTNVPGMKQ+ P R NP M Y+ R +PP+ YSPYGYGK
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKA 204
Query: 173 PRFRMPMRYSPY 184
PRFR PMRY PY
Sbjct: 205 PRFRRPMRYMPY 216
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 70/140 (50%), Positives = 90/140 (64%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-- 74
E+ MK R+ EMEEEA LR+M A + ++ S++ S +R++VDSRS+FVGN
Sbjct: 30 EISAMKKRVAEMEEEAAKLREMQASLDSQ--SQE------LSTESRDDVDSRSIFVGNVD 81
Query: 75 ---------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGR 124
HFQSCG++NRVTI DKF GQPKG+AYVEF + V +AL LNES GR
Sbjct: 82 YSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVLNESVFKGR 141
Query: 125 QLKVTVKRTNVPGMKQHRPR 144
+KV+ KRTN PGM + R R
Sbjct: 142 NIKVSPKRTNYPGMSRGRGR 161
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 67/141 (47%), Positives = 88/141 (62%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS 69
E + + E++ MK R+ EME EA LR+M A + + S ++ ++E++D+RS
Sbjct: 19 EGGDDEEEIEAMKRRVAEMESEAAKLREMQATLDQQSESLKE---------DKEDIDARS 69
Query: 70 VFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLN 117
+FVGN HFQSCG++NRVTI DKF GQPKGYAYVEF + V +AL LN
Sbjct: 70 IFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLN 129
Query: 118 ESELHGRQLKVTVKRTNVPGM 138
ES GR LKV KRTN+PGM
Sbjct: 130 ESVFRGRNLKVVPKRTNLPGM 150
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 71/152 (46%), Positives = 92/152 (60%)
Query: 5 DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE 64
D D ++T+ K EL +MK R+ EME EA LR M ++ NE + ++ ++E
Sbjct: 3 DQDALDTQEK--ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 51
Query: 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQE 112
+D++SV+VGN HF SCG+VNRVTI DKF G PKG+AY+EF + V
Sbjct: 52 IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 111
Query: 113 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 144
AL LN S LH R LKVT KRTNVPGM + R R
Sbjct: 112 ALLLNGSMLHERPLKVTPKRTNVPGMSRGRGR 143
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 65/136 (47%), Positives = 87/136 (63%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S AA SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 75 -----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 122
HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 123 GRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 163 GRQIKVMSKRTNRPGL 178
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 82/206 (39%), Positives = 106/206 (51%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 74 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 129
Query: 58 -SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 104
S+ + E D+RS++VGN HF CG+VNRVTI DKF G PKG+AY+EF
Sbjct: 130 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 189
Query: 105 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAI 158
E+V+ +L L+ES GRQ+KV KRTN PG+ R PR R SR
Sbjct: 190 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRF 249
Query: 159 IPPFLYSPYGYGKIPRFRMPMRYSPY 184
F P G R R YSPY
Sbjct: 250 YSGFNSRPRGRVYRGRARATSWYSPY 275
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 82/206 (39%), Positives = 106/206 (51%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 104
S+ + E D+RS++VGN HF CG+VNRVTI DKF G PKG+AY+EF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 105 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAI 158
E+V+ +L L+ES GRQ+KV KRTN PG+ R PR R SR
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRF 280
Query: 159 IPPFLYSPYGYGKIPRFRMPMRYSPY 184
F P G R R YSPY
Sbjct: 281 YSGFNSRPRGRVYRGRARATSWYSPY 306
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 82/206 (39%), Positives = 106/206 (51%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 104
S+ + E D+RS++VGN HF CG+VNRVTI DKF G PKG+AY+EF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 105 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAI 158
E+V+ +L L+ES GRQ+KV KRTN PG+ R PR R SR
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRF 280
Query: 159 IPPFLYSPYGYGKIPRFRMPMRYSPY 184
F P G R R YSPY
Sbjct: 281 YSGFNSRPRGRVYRGRARATSWYSPY 306
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 82/206 (39%), Positives = 106/206 (51%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 104
S+ + E D+RS++VGN HF CG+VNRVTI DKF G PKG+AY+EF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 105 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAI 158
E+V+ +L L+ES GRQ+KV KRTN PG+ R PR R SR
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRF 280
Query: 159 IPPFLYSPYGYGKIPRFRMPMRYSPY 184
F P G R R YSPY
Sbjct: 281 YSGFNSRPRGRVYRGRARATSWYSPY 306
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 82/206 (39%), Positives = 106/206 (51%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 104
S+ + E D+RS++VGN HF CG+VNRVTI DKF G PKG+AY+EF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 105 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAI 158
E+V+ +L L+ES GRQ+KV KRTN PG+ R PR R SR
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRF 280
Query: 159 IPPFLYSPYGYGKIPRFRMPMRYSPY 184
F P G R R YSPY
Sbjct: 281 YSGFNSRPRGRVYRGRARATSWYSPY 306
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 80/209 (38%), Positives = 108/209 (51%)
Query: 2 EGDDMDMIETEN-----KQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGG 56
E ++ ++ET+ + EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 94 EEEEPGLVETDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAG 153
Query: 57 S---SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAY 101
SL + E D+RS++VGN HF CG+VNRVTI DKF G PKG+AY
Sbjct: 154 PVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAY 213
Query: 102 VEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSR 155
+EF E+V+ +L L+ES GRQ+KV KRTN PG+ R PR R SR
Sbjct: 214 IEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSR 273
Query: 156 GAIIPPFLYSPYGYGKIPRFRMPMRYSPY 184
F P G R R YSPY
Sbjct: 274 SRFYSGFNSRPRGRIYRGRARATSWYSPY 302
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 73/188 (38%), Positives = 98/188 (52%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLF 228
Query: 122 HGRQLKVTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
GRQ+KV KRTN PG+ R R Y SR + P G R R
Sbjct: 229 RGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRAR 288
Query: 177 MPMRYSPY 184
Y+PY
Sbjct: 289 ATSWYTPY 296
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 77/189 (40%), Positives = 99/189 (52%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G SL + E D+RS++VG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 174 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 233
Query: 122 HGRQLKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRF 175
GRQ+KV KRTN PG+ R PR R SR F P G R
Sbjct: 234 RGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSRFYSGFNSRPRGRIYRGRA 293
Query: 176 RMPMRYSPY 184
R YSPY
Sbjct: 294 RATSWYSPY 302
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 72/188 (38%), Positives = 99/188 (52%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DK+ G PKG+AY+EF E+V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLF 228
Query: 122 HGRQLKVTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
GRQ+KV KRTN PG+ R R Y SR + P G R R
Sbjct: 229 RGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRAR 288
Query: 177 MPMRYSPY 184
+ Y+PY
Sbjct: 289 VTSWYTPY 296
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/188 (38%), Positives = 98/188 (52%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 167
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 168 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLF 227
Query: 122 HGRQLKVTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
GRQ+KV KRTN PG+ R R Y SR + P G R R
Sbjct: 228 RGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRAR 287
Query: 177 MPMRYSPY 184
Y+PY
Sbjct: 288 ATSWYTPY 295
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 64/136 (47%), Positives = 86/136 (63%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S A SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102
Query: 75 -----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 122
HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 123 GRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 163 GRQIKVMSKRTNRPGL 178
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 71/171 (41%), Positives = 99/171 (57%)
Query: 3 GDD---MDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGG--S 57
GD+ +D E + EL+ +K R++EMEEEA L+++ +V +M + P AG
Sbjct: 29 GDEEPGLDEGEAAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQM-NLSPPPAGPVIM 87
Query: 58 SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFL 105
S+ + E D RS++VGN HF CG+VNRVTI DKF G PKG+AY+EF
Sbjct: 88 SIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFA 147
Query: 106 QSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRG 156
E+V+ A+ L+ES GRQ+KV KRTN PG+ R P ++SRG
Sbjct: 148 DKESVRTAMALDESLFRGRQIKVGAKRTNRPGIST--TDRGFPRARFRSRG 196
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 75/201 (37%), Positives = 107/201 (53%)
Query: 1 MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA 60
M GDD D+ E E+++ + +LK ++ E M+ ++ S Q
Sbjct: 17 MTGDDADLSAIEGDLNEIEEEQKKLKAIQNEMVG--HMNLNTSSQSNSSQSLLTP----E 70
Query: 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSE 108
+ E D++SV+VGN QHF CG+V+RVTI+ D+F G PKG+AYVEF + E
Sbjct: 71 EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKE 130
Query: 109 AVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVY--QSRGAIIPPFLYSP 166
+Q AL + +S L GRQ+KV KRTN PGM RP PF + RG +I ++Y+
Sbjct: 131 GMQNALAMTDSLLRGRQIKVDPKRTNKPGMST--TNRP-PFRGRGGRGRGNVIVKYVYA- 186
Query: 167 YGYGKIPRFRMPMR---YSPY 184
G G PR R R ++PY
Sbjct: 187 -G-GFRPRGRGARRRPGFAPY 205
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 68/173 (39%), Positives = 95/173 (54%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-- 74
EL+ +K R++EMEEE L+++ + + + + + E D RS++VGN
Sbjct: 1 ELEAIKARVREMEEEDKRLKELQLEAESCLLMGSEAGLFQRMTEGKVEADQRSIYVGNVD 60
Query: 75 ---------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGR 124
HF CG +NRVTI DKF G PKGYAY+EF Q +V+ A+ L+ES GR
Sbjct: 61 YGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSSVKAAVELDESIFRGR 120
Query: 125 QLKVTVKRTNVPGMKQ-HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
+KV KRTN+PG+ R R F Q+RG +IP + Y YG G+ R R
Sbjct: 121 VIKVLPKRTNMPGISSTDRGGRRGHF---QARGGLIPRWGY--YG-GQPVRLR 167
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 61/152 (40%), Positives = 93/152 (61%)
Query: 7 DMIETENKQV---ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D I EN+QV +++K +L+EME+E LR++H+++ +E + + +
Sbjct: 3 DQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTN----GVTHPTDEEKR 58
Query: 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 111
+ D+RS+++GN QHF S G VNRVTI T+KF GQPKG+AY+EF ++AV
Sbjct: 59 DTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVN 118
Query: 112 EALH-LNESELHGRQLKVTVKRTNVPGMKQHR 142
+A+ L+ S RQLKV+ KRTN+PG+ R
Sbjct: 119 KAVATLDGSTFRERQLKVSAKRTNIPGISVKR 150
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 61/152 (40%), Positives = 93/152 (61%)
Query: 7 DMIETENKQV---ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D I EN+QV +++K +L+EME+E LR++H+++ +E + + +
Sbjct: 3 DQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTN----GVTHPTDEEKR 58
Query: 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 111
+ D+RS+++GN QHF S G VNRVTI T+KF GQPKG+AY+EF ++AV
Sbjct: 59 DTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVN 118
Query: 112 EALH-LNESELHGRQLKVTVKRTNVPGMKQHR 142
+A+ L+ S RQLKV+ KRTN+PG+ R
Sbjct: 119 KAVATLDGSTFRERQLKVSAKRTNIPGISVKR 150
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 71/178 (39%), Positives = 90/178 (50%)
Query: 28 MEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGN---------- 74
MEEEA L+++ +V +M P G S+ + E D+RS++VGN
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 75 -QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132
HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ+KV KR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 133 TNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPY 184
TN PG+ R PR R SR F P G R R YSPY
Sbjct: 121 TNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY 178
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 56/126 (44%), Positives = 75/126 (59%)
Query: 28 MEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGN---------- 74
MEEEA L+++ +V +M P G S+ + E D+RS++VGN
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 75 -QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132
HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ+KV KR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 133 TNVPGM 138
TN PG+
Sbjct: 121 TNRPGI 126
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 64/172 (37%), Positives = 94/172 (54%)
Query: 4 DDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKV-GNEMASKQDPAAGGSSLAN- 61
+D ++ E + + E+++ +L E++ + + + GN GG L N
Sbjct: 40 EDPELEEMKKRFREMEEEAKKLTELQNN------LESNITGNNGVGIGGNIGGGGGLMNT 93
Query: 62 -REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSE 108
+EE+DSRSV+VGN +FQSCGTVNR+TI +DK G PKG YVEF+ E
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKE 153
Query: 109 AVQEALHLNESELHGRQLKVTVKRTNVPG-MKQH-RPRRPNPFMVYQSRGAI 158
++ A+ LN+S + RQLK+T KRTN+P M+Q P F + RG I
Sbjct: 154 SIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGRGGI 205
Score = 120 (47.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKV-----GNEMASKQDPAAGGSSLAN--R 62
ET + EL++MK R +EMEEEA L ++ + GN GG L N +
Sbjct: 36 ETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQ 95
Query: 63 EEVDSRSVFVGNQHFQS 79
EE+DSRSV+VGN ++S
Sbjct: 96 EEIDSRSVYVGNVDYKS 112
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 49/99 (49%), Positives = 66/99 (66%)
Query: 59 LANREEVDSRSVFVGNQHFQSC-----------GTVNRVTIRTDKF-GQPKGYAYVEFLQ 106
LA +EE+D RSV+VGN +QS G + RVTI D+F G PKGYAY+EF Q
Sbjct: 19 LAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQ 78
Query: 107 SEAVQEAL-HLNESELHGRQLKVTVKRTNVPGMKQHRPR 144
+E+VQ+A+ L+ E GR+L+VT KRTN+PG ++ R R
Sbjct: 79 TESVQKAIDELHGKEFRGRELRVTAKRTNLPGFRRGRGR 117
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 43/93 (46%), Positives = 60/93 (64%)
Query: 58 SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFL 105
S ++E+D RSV+VGN HF SCG++NR+TI DKF G PKGYAY+EF
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFA 142
Query: 106 QSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 138
+ +V A+ ++E+ GR +KV KRTN+PG+
Sbjct: 143 ERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 43/93 (46%), Positives = 60/93 (64%)
Query: 58 SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFL 105
S ++E+D RSV+VGN HF SCG++NR+TI DKF G PKGYAY+EF
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFA 142
Query: 106 QSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 138
+ +V A+ ++E+ GR +KV KRTN+PG+
Sbjct: 143 ERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGI 175
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 66/162 (40%), Positives = 81/162 (50%)
Query: 29 EEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-----------QHF 77
EEE TA Q+ + E P +G + E D RSV+VGN HF
Sbjct: 115 EEEGTAAGQL---LSPETVGC--PLSGTPE--EKVEADHRSVYVGNVDYGGSAEELEAHF 167
Query: 78 QSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVP 136
CG V+RVTI DKF G PKGYAY+EF +VQ A+ L++S GR +KV KRTN P
Sbjct: 168 SRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFP 227
Query: 137 GMKQ--HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
G+ R +P SRGA PF +S G PR R
Sbjct: 228 GISSTDRGGLRGHP----GSRGA---PFPHS--GLQGRPRLR 260
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 53/139 (38%), Positives = 73/139 (52%)
Query: 12 ENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVF 71
E+ +V + ++ K EEE R++ + E P A ++ E D RSV+
Sbjct: 90 EHAEVLPEPPSVQRKATEEERAEAREL---LSPETIGCFFPGAPKENV----EADHRSVY 142
Query: 72 VGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNES 119
VGN +F CG ++RVTI DKF G PKGYAY+EF +VQ A+ L+ES
Sbjct: 143 VGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDES 202
Query: 120 ELHGRQLKVTVKRTNVPGM 138
GR +KV KRTN PG+
Sbjct: 203 TFRGRVIKVLPKRTNFPGI 221
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 53/139 (38%), Positives = 73/139 (52%)
Query: 12 ENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVF 71
E+ +V + ++ K EEE R++ + E P A ++ E D RSV+
Sbjct: 105 EHAEVLPEPPSVQRKATEEERAEAREL---LSPETIGCFFPGAPKENV----EADHRSVY 157
Query: 72 VGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNES 119
VGN +F CG ++RVTI DKF G PKGYAY+EF +VQ A+ L+ES
Sbjct: 158 VGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDES 217
Query: 120 ELHGRQLKVTVKRTNVPGM 138
GR +KV KRTN PG+
Sbjct: 218 TFRGRVIKVLPKRTNFPGI 236
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 53/146 (36%), Positives = 77/146 (52%)
Query: 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQS 107
A++ E DSRS+FVGN HF+ CG + R+T+ D+ G PKGY Y+EF +S
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF-ES 114
Query: 108 EAVQE-ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAII--P---- 160
A +E AL LN EL G+++ V+ KRTN+PG +H + F +Q ++ P
Sbjct: 115 PAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDT 174
Query: 161 -PFLYSPYGYGKIPRFRMPMRYSPYY 185
P+ Y PY + P + YY
Sbjct: 175 FPY-YPPYPPNQSPNQNFGYNKNNYY 199
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 58/165 (35%), Positives = 82/165 (49%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
++ EE+A AL G ++ +++ + + E D RSV+VGN
Sbjct: 125 QQEEEDAGALL-----AGQLLSPEKEAGFPSDTPTEKVEADHRSVYVGNVDYEGTARELE 179
Query: 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+F CG ++RVTI DKF G PKGYAY+EF + Q A+ L+ S GR +KV KRT
Sbjct: 180 AYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDNSVFRGRVIKVLPKRT 239
Query: 134 NVPGMKQ--HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
N PG+ R +P +RG PF +S + PRFR
Sbjct: 240 NFPGISSTDRGGLRGHP----SARGR---PFPHSSLERERGPRFR 277
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 55/150 (36%), Positives = 78/150 (52%)
Query: 1 MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA 60
+E + + E+ + + + ++ K EEE +RQ+ + E D +S
Sbjct: 83 LEAIKLKLWAMEHAEAQPEPPCVQRKATEEERAEVRQL---LSPETV---DCFFSRTSKE 136
Query: 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSE 108
N E D RSVFVGN +F CG ++RVTI DKF G PKGYAY+EF
Sbjct: 137 N-VEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHR 195
Query: 109 AVQEALHLNESELHGRQLKVTVKRTNVPGM 138
+V+ A+ L+ES GR +KV KRTN PG+
Sbjct: 196 SVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 51/135 (37%), Positives = 76/135 (56%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDS--RSVFVGN 74
ELD ++ + EM+E M +V + + A + + E +DS RS++VGN
Sbjct: 19 ELDAVQACVLEMDES-----DMQYEVERQFPYSPE-AELFFDMTHEERIDSDRRSIYVGN 72
Query: 75 -----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 122
+F SCG VNRVTI ++F G PKG+AY+EF E+V+ A+ L+E+
Sbjct: 73 VDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFR 132
Query: 123 GRQLKVTVKRTNVPG 137
GR +KV+ KRTN+PG
Sbjct: 133 GRVIKVSPKRTNIPG 147
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 186 (70.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 49/141 (34%), Positives = 73/141 (51%)
Query: 14 KQVELDDMKIRLKEMEEEATALRQMHAKVGNEMA----SKQDPAAGGSSLANREEVDSRS 69
+++E +K+ E + R + G E A ++Q + S + E D RS
Sbjct: 101 QELEAIKLKLWAMEQAQGPEPPRVQNLDEGEEAAGALLARQLLSPETDSPLEKAEADHRS 160
Query: 70 VFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLN 117
++VGN +F CG ++RVTI DKF G PKGYAY+EF + Q A+ L+
Sbjct: 161 IYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELD 220
Query: 118 ESELHGRQLKVTVKRTNVPGM 138
+S GR +KV KRTN+PG+
Sbjct: 221 KSIFRGRVIKVLPKRTNLPGI 241
>WB|WBGene00017140 [details] [associations]
symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
Length = 197
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 51/144 (35%), Positives = 76/144 (52%)
Query: 27 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE-VDSRSVFVGN----------- 74
E+E E+ L Q+ N+MA + AA ++ +D++SVF+GN
Sbjct: 23 EIEAESAILEQIQ----NKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVE 78
Query: 75 QHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF+ CG + R TI DKF + K +AY+EF S +++ AL +N S R + VT KRT
Sbjct: 79 EHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 138
Query: 134 NVPGMKQHRPRRPNPFMVYQSRGA 157
N+PGM H R + + RGA
Sbjct: 139 NIPGMG-HGVRGSSRGTFGRGRGA 161
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 50/144 (34%), Positives = 77/144 (53%)
Query: 27 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE-VDSRSVFVGN----------- 74
E+E E+ L+Q+ N+MA + AA ++ +D++SVF+GN
Sbjct: 17 EIEAESAILQQIQ----NKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIE 72
Query: 75 QHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF+ CG + + TI DKF + K +AY+EF S +++ AL +N S R + VT KRT
Sbjct: 73 EHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 132
Query: 134 NVPGMKQHRPRRPNPFMVYQSRGA 157
N+PGM H R + + RGA
Sbjct: 133 NIPGMG-HGVRGSSRGTFGRGRGA 155
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 182 (69.1 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 56/165 (33%), Positives = 80/165 (48%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
++ EE+A AL G ++ +++ + + E D RSV+VGN
Sbjct: 125 QQEEEDAGALL-----AGQLLSPEKEAGFPSDTPTEKVEADHRSVYVGNVDYEGTARELE 179
Query: 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+F CG ++RVTI DKF G PKGYAY+EF + Q + L+ S G +KV KRT
Sbjct: 180 AYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAPVELDNSVFRGPVIKVLPKRT 239
Query: 134 NVPGMKQ--HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 176
N PG+ R +P +RG PF +S + PRFR
Sbjct: 240 NFPGISSTDRGGLRGHP----SARGR---PFPHSSLERERGPRFR 277
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEA 109
+E+ D+RSV+VGN +HF CG V RVTI DKF G K +A+VEF + E+
Sbjct: 40 QEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLES 99
Query: 110 VQEALHLNESELHGRQLKVTVKRTNVPGM 138
VQ AL L+ + R++ VT+KRTN PGM
Sbjct: 100 VQLALVLSGTMFRNRKIMVTLKRTNKPGM 128
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 142 (55.0 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 49/136 (36%), Positives = 67/136 (49%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
KE AL++ A++ + + D A+ SS D RSVFVGN
Sbjct: 229 KEESAATQALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAIE 282
Query: 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF CG++ V I DK G KG+ YV F +++V AL LN SEL GR+L+V ++
Sbjct: 283 KHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV-MRSV 341
Query: 134 NVPGMKQHR--PRRPN 147
N KQ PR N
Sbjct: 342 NKEKFKQQNSNPRLKN 357
Score = 36 (17.7 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 4 DDMDMIETENKQVELDDMKIRLK 26
D D + ++ K+++++ + RLK
Sbjct: 158 DTEDTVVSQRKKIQINQEEERLK 180
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 87 TIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 138
TI DKF G PKG+AY+EF E+V+ +L L+ES GRQ+KV KRTN PG+
Sbjct: 2 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 54
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 49/136 (36%), Positives = 67/136 (49%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
KE AL++ A++ + + D A+ SS D RSVFVGN
Sbjct: 251 KEESAATQALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAIE 304
Query: 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF CG++ V I DK G KG+ YV F +++V AL LN SEL GR+L+V ++
Sbjct: 305 KHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV-MRSV 363
Query: 134 NVPGMKQHR--PRRPN 147
N KQ PR N
Sbjct: 364 NKEKFKQQNSNPRLKN 379
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 139 (54.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 47/127 (37%), Positives = 65/127 (51%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
KE A AL++ A++ + D A S A+R D RSVFVGN
Sbjct: 249 KEERAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYRVDESALE 302
Query: 75 QHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V ++
Sbjct: 303 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRSV 361
Query: 134 NVPGMKQ 140
N +KQ
Sbjct: 362 NKEKLKQ 368
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/134 (35%), Positives = 67/134 (50%)
Query: 29 EEEATALRQMHAKV-GNEMASKQDPAAGGSSLANREEVDSRSVFVGN-----------QH 76
+EE A++ ++ K G E+AS +S N + RSVF+GN +H
Sbjct: 213 KEERDAVKALNYKRNGTEVASGFHIRVDSAS-KNSLHDNKRSVFLGNLAYDISDSAVREH 271
Query: 77 FQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT--VKRT 133
F CG V V I D+ G KG+ YV F ++AV AL LN S+L GR+L+V V++
Sbjct: 272 FADCGDVVAVRIVRDRQSGMGKGFGYVLFENTDAVHLALKLNNSDLMGRKLRVKRCVEKG 331
Query: 134 NVPGMKQ-HRPRRP 146
P RPR P
Sbjct: 332 RAPQRSTTSRPRGP 345
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 46/127 (36%), Positives = 65/127 (51%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
K+ A AL++ A++ + D A S A+R D RSVFVGN
Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYKIEDSALE 308
Query: 75 QHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V ++
Sbjct: 309 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRSV 367
Query: 134 NVPGMKQ 140
N +KQ
Sbjct: 368 NKEKLKQ 374
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 132 (51.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 45/124 (36%), Positives = 65/124 (52%)
Query: 29 EEEAT-ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-----------QH 76
E AT AL++ A++ + + D A+ SS D RSVFVGN +H
Sbjct: 253 ESSATKALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAVEEH 306
Query: 77 FQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNV 135
F CG++ V I D+ G +G+ YV F ++AV AL LN SEL GR+L+V ++ N
Sbjct: 307 FLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRSVNK 365
Query: 136 PGMK 139
+K
Sbjct: 366 EKLK 369
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 130 (50.8 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 47/133 (35%), Positives = 66/133 (49%)
Query: 26 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN----------- 74
K+ A AL + A++ + + D A+ SS D RSVFVGN
Sbjct: 247 KDESAAAKALERNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAVE 300
Query: 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT---- 129
+HF CG+V V I D G +G+ YV F ++AV AL LN SEL GR+L+V
Sbjct: 301 KHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSIH 360
Query: 130 ---VKRTNVPGMK 139
+K+ + PG+K
Sbjct: 361 KEKLKQNSNPGLK 373
>RGD|619928 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
RGD:619928 GO:GO:0005634 eggNOG:NOG238057 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD UniGene:Rn.39199 EMBL:U94858 IPI:IPI00195515
STRING:O08729 UCSC:RGD:619928 InParanoid:O08729
Genevestigator:O08729 Uniprot:O08729
Length = 85
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G SL + E D+RS++VG
Sbjct: 19 ELEAIKARVREMEEEADKLKELQNEVXKQMXMSPPPGNAGPVIMSLEEKMEADARSIYVG 78
Query: 74 N 74
N
Sbjct: 79 N 79
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 107 (42.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 72 VGNQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVT 129
+GN F S G +N V I D+ G+P+G+A++EF + + Q A+ +N +E +GR L+V
Sbjct: 21 LGN-FFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVN 79
Query: 130 V 130
+
Sbjct: 80 L 80
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 101 (40.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 72 VGNQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129
+GN +F G V+ V I D+ G+P+G+A+VEF + A Q A+ N + +GR L+V
Sbjct: 20 LGN-YFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVN 78
Query: 130 V 130
+
Sbjct: 79 L 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 101 (40.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 72 VGNQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129
+GN +F G V+ V I D+ G+P+G+A+VEF + A Q A+ N + +GR L+V
Sbjct: 20 LGN-YFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVN 78
Query: 130 V 130
+
Sbjct: 79 L 79
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 100 (40.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 112
E D R++FVGN + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 113 ALHL-NESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFL 163
A++L N +L+GR +K+ + +P K PN + Q+ +PP L
Sbjct: 66 AMNLLNGIKLYGRPIKIQFRSVVMPH-KMSVCHIPNIMLEIQA----LPPHL 112
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 100 (40.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 72 VGNQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 128
+GN +F + G VN V I D+ G+P+G+A+VEF + Q A+ LN +GR L+V
Sbjct: 22 IGN-YFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRV 79
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 97 (39.2 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 75 QHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
QHF G++N + DK + +G+ +V F QS++VQ+A+ E+E+ GR+L V+ +
Sbjct: 21 QHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEA-ENEMGGRKLVVSFAQE 79
Query: 134 NVPGMKQHRP 143
Q +P
Sbjct: 80 KTEN-NQQKP 88
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 114 (45.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 76 HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV---KR 132
+F+ GTV V I TD+ G KGY +V FL + VQ+ + ++ +HG++LK+ K+
Sbjct: 55 YFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-SQISVHGKRLKLGPAIRKQ 113
Query: 133 TNVPGMKQHRPRRPNP 148
N+ Q RP NP
Sbjct: 114 QNLCSYMQPRPLAFNP 129
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 114 (45.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 76 HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV---KR 132
+F+ GTV V I TD+ G KGY +V FL + VQ+ + ++ +HG++LK+ K+
Sbjct: 55 YFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-SQISVHGKRLKLGPAIRKQ 113
Query: 133 TNVPGMKQHRPRRPNP 148
N+ Q RP NP
Sbjct: 114 QNLCSYMQPRPLAFNP 129
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 94 (38.1 bits), Expect = 0.00014, P = 0.00014
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 110
+EE D R+VFVGN + F G + +VTI D+ G PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESV 63
Query: 111 QEALHL-NESELHGRQLKV 128
A+ L N L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 109 (43.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH 115
RS+FVGN HFQ CG + V + D+ G KG+ YV F ++V AL
Sbjct: 252 RSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALK 311
Query: 116 LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNP 148
LN S L +Q K+ VKR+ +K+ + ++ P
Sbjct: 312 LNGSTL--QQRKIRVKRS----VKKEKEKKTPP 338
Score = 39 (18.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 17 ELDDMKIRLKEMEEE--ATALRQMHAKVGNEMASKQDPAAGGSSLA-NREE--VDSRSVF 71
+L D + L+ +EE A+A + + ++ P ++ N EE R+VF
Sbjct: 93 KLQDRESALQNADEEGQASAKKVKRKRADGGEDEEERPTKHKKTVKFNAEERLKMKRTVF 152
Query: 72 VGN 74
VGN
Sbjct: 153 VGN 155
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 38/139 (27%), Positives = 66/139 (47%)
Query: 2 EGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMAS-KQDPAAGGSSLA 60
E DD D E E+++ E D+ E EEE +++ K EMA K P A +
Sbjct: 253 EDDDEDEDEEEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 312
Query: 61 NREEVDSRSVFVGNQHFQSCGT-----VNRVTIRTD------KFGQPKGYAYVEFLQSEA 109
E S ++FVGN +F + ++ V + D + G + + YV+F +E
Sbjct: 313 ATEPTTSFNLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAED 372
Query: 110 VQEALHLNESELHGRQLKV 128
+++AL L ++ G ++K+
Sbjct: 373 LEKALELTGLKVFGNEIKL 391
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 106 (42.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 36/108 (33%), Positives = 51/108 (47%)
Query: 50 QDPAAGGSSLANREEVDS-RSVFVGN-----------QHFQSCGTVNRVTI-RTDKFGQP 96
QD S+A+ D RS+FVGN +HF+ CG + V I R K
Sbjct: 260 QDHHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMG 319
Query: 97 KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 144
KG+AYV+F ++V +AL LNE + + K + T P K + R
Sbjct: 320 KGFAYVQFKDLQSVNKALLLNEKPMKSQ--KQEDENTKKPTKKARKLR 365
Score = 43 (20.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 2 EGDDMDMIETENKQVELDDMKI--RLKEMEEEATALRQMHAKVGNEMASKQD 51
E D+ + + ++V L +K + K +E+ + +AK+ NE A +D
Sbjct: 63 EASKPDVSDEQTEEVALPKVKKAKKSKRNDEDEDLEARYYAKLLNEEAEAED 114
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 114 (45.2 bits), Expect = 0.00027, P = 0.00027
Identities = 36/107 (33%), Positives = 51/107 (47%)
Query: 40 AKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTI 88
A V E + + S+ E+ SR++FV N +HF G V + I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511
Query: 89 RTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 134
TD GQP G AY+EF + EA + AL L+ + R LK+ VK +N
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI-VKGSN 557
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 113 (44.8 bits), Expect = 0.00039, P = 0.00039
Identities = 37/155 (23%), Positives = 72/155 (46%)
Query: 2 EGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLAN 61
E +D + E E++ E +D + +E E+ +++ K EMA+K P A
Sbjct: 213 ESEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEI 272
Query: 62 REEVDSRSVFVGN----QHFQSCGTV-------NRVTIRTDKFGQPKGYAYVEFLQSEAV 110
+ + S+FV N + ++ T + + + G K + YV+FL +E +
Sbjct: 273 KAPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDM 332
Query: 111 QEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRR 145
+AL LN +L G ++K+ K + +K+++ R
Sbjct: 333 DKALQLNGKKLMGLEIKLE-KAKSKESLKENKKER 366
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 88 (36.0 bits), Expect = 0.00068, P = 0.00068
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 77 FQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVTVKRTN 134
F GTV V I TD + G+ KG YV L E +EA+ L+ + L R + V+V R
Sbjct: 23 FSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQ 82
Query: 135 VPGMKQHRPRRPNP 148
+ PRR P
Sbjct: 83 KQATRP-APRRGKP 95
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 88 (36.0 bits), Expect = 0.00068, P = 0.00068
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 77 FQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVTVKRTN 134
F GTV V I TD + G+ KG YV L E +EA+ L+ + L R + V+V R
Sbjct: 23 FSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQ 82
Query: 135 VPGMKQHRPRRPNP 148
+ PRR P
Sbjct: 83 KQATRP-APRRGKP 95
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 109 (43.4 bits), Expect = 0.00094, P = 0.00094
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 14 KQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVG 73
+++ LD + R + E A + + + G + ++ G A+ E D ++
Sbjct: 365 REIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFD-ASLSEDDIKNTL-- 421
Query: 74 NQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHG 123
+HF SCG + V++ D+ G KG AY+EF SE ++AL LN S++ G
Sbjct: 422 REHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALELNGSDMGG 470
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 185 185 0.00080 110 3 11 22 0.46 32
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 546 (58 KB)
Total size of DFA: 141 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.58u 0.17s 21.75t Elapsed: 00:00:01
Total cpu time: 21.59u 0.17s 21.76t Elapsed: 00:00:01
Start: Thu May 9 23:43:01 2013 End: Thu May 9 23:43:02 2013