BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029897
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 23/146 (15%)
Query: 5 DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE 64
D D ++T+ K EL +MK R+ EME EA LR M ++ NE + ++ ++E
Sbjct: 3 DQDALDTQEK--ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 51
Query: 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQE 112
+D++SV+VGN HF SCG+VNRVTI DKF G PKG+AY+EF + V
Sbjct: 52 IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 111
Query: 113 ALHLNESELHGRQLKVTVKRTNVPGM 138
AL LN S LH R LKVT KRTNVPGM
Sbjct: 112 ALLLNGSMLHERPLKVTPKRTNVPGM 137
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 87/136 (63%), Gaps = 14/136 (10%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S AA SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 75 -----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 122
HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 123 GRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 163 GRQIKVMSKRTNRPGL 178
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 14/136 (10%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S A SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102
Query: 75 -----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELH 122
HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 123 GRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 163 GRQIKVMSKRTNRPGL 178
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 34/171 (19%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSL-------ANR 62
ET + EL++MK R +EMEEEA L ++ + + + GG+ ++
Sbjct: 36 ETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQ 95
Query: 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAV 110
EE+DSRSV+VGN +FQSCGTVNR+TI +DK G PKG YVEF+ E++
Sbjct: 96 EEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESI 155
Query: 111 QEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPP 161
A+ LN+S + RQLK+T KRTN+P Y R ++PP
Sbjct: 156 INAMALNDSFFNERQLKITPKRTNLP---------------YYMRQGVLPP 191
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 33/158 (20%)
Query: 14 KQVELDD-----MKIRLKEMEEEATALRQMHAK---VGNE----MASKQDPAAGGS---- 57
++ ELDD +++R++EMEEEA L+ + + +G M + G+
Sbjct: 18 EECELDDPELKAIRMRVREMEEEAERLKGLSGQDKSIGVSTRPCMQTTHSKMTAGAYTEG 77
Query: 58 -----SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYA 100
S ++E+D RSV+VGN HF SCG++NR+TI DKF G PKGYA
Sbjct: 78 PPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYA 137
Query: 101 YVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 138
Y+EF + +V A+ ++E+ GR +KV KRTN+PG+
Sbjct: 138 YIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 46/166 (27%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS------------ 57
E E EL +++R++EMEEEA L+ + S QD + G S
Sbjct: 19 ECELDDPELKAIRMRVREMEEEAERLKGL---------SGQDKSIGVSPRPCMKLIHSKM 69
Query: 58 -------------SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF 93
S ++E+D RSV+VGN HF SCG++NR+TI DKF
Sbjct: 70 TAGEYTEGPPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKF 129
Query: 94 -GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 138
G PKGYAY+EF + +V A+ ++E+ GR +KV KRTN+PG+
Sbjct: 130 SGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGI 175
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G SL + E D+RS++VG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 174 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 233
Query: 122 HGRQLKVTVKRTNVPGM---------KQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 172
GRQ+KV KRTN PG+ ++R R N SR F P G
Sbjct: 234 RGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTN---YNSSRSRFYSGFNSRPRGRIYR 290
Query: 173 PRFRMPMRYSPY 184
R R YSPY
Sbjct: 291 GRARATSWYSPY 302
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 122 HGRQLKVTVKRTNVPGMK---------QHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 172
GRQ+KV KRTN PG+ ++R R N SR F P G
Sbjct: 238 RGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN---YNSSRSRFYSGFNSRPRGRVYR 294
Query: 173 PRFRMPMRYSPY 184
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 122 HGRQLKVTVKRTNVPGMK---------QHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 172
GRQ+KV KRTN PG+ ++R R N SR F P G
Sbjct: 238 RGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN---YNSSRSRFYSGFNSRPRGRVYR 294
Query: 173 PRFRMPMRYSPY 184
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 15/137 (10%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLF 228
Query: 122 HGRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 15/137 (10%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 167
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES
Sbjct: 168 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLF 227
Query: 122 HGRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 228 RGRQIKVVPKRTNRPGI 244
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 15/137 (10%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168
Query: 74 N-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 121
N HF CG+VNRVTI DK+ G PKG+AY+EF E+V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLF 228
Query: 122 HGRQLKVTVKRTNVPGM 138
GRQ+KV KRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 6 MDMIETEN------KQVELDDMKIRLKEMEEEATALR------QMHAKVGNEMASKQDPA 53
+ ++E EN EL+ +K+++ ME+ R Q + G P
Sbjct: 69 LSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPE 128
Query: 54 AGGSSLAN----REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPK 97
G L+ + E D RSV+VGN HF CG V+RVTI DKF G PK
Sbjct: 129 TVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPK 188
Query: 98 GYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 138
GYAY+EF +VQ A+ L++S GR +KV KRTN PG+
Sbjct: 189 GYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGI 229
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 12/87 (13%)
Query: 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 111
E D RSV+VGN +F CG ++RVTI DKF G PKGYAY+EF +VQ
Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQ 194
Query: 112 EALHLNESELHGRQLKVTVKRTNVPGM 138
A+ L+ES GR +KV KRTN PG+
Sbjct: 195 AAVRLDESTFRGRVIKVLPKRTNFPGI 221
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 1 MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA 60
+E + + E+ + + + ++ K EEE +RQ+ ++ + +
Sbjct: 83 LEAIKLKLWAMEHAEAQPEPPCVQRKATEEERAEVRQL-------LSPETVDCFFSRTSK 135
Query: 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSE 108
E D RSVFVGN +F CG ++RVTI DKF G PKGYAY+EF
Sbjct: 136 ENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHR 195
Query: 109 AVQEALHLNESELHGRQLKVTVKRTNVPGM 138
+V+ A+ L+ES GR +KV KRTN PG+
Sbjct: 196 SVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 12/106 (11%)
Query: 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQS 107
A++ E DSRS+FVGN HF+ CG + R+T+ D+ G PKGY Y+EF
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESP 115
Query: 108 EAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQ 153
++AL LN EL G+++ V+ KRTN+PG +H + F +Q
Sbjct: 116 AYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQ 161
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 17/125 (13%)
Query: 27 EMEEEATALRQMHAKVGNEMASKQDPAA-GGSSLANREEVDSRSVFVGN----------- 74
E+E E+ L Q+ N+MA + AA + ++ +D++SVF+GN
Sbjct: 23 EIEAESAILEQIQ----NKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVE 78
Query: 75 QHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133
+HF+ CG + R TI DKF + K +AY+EF S +++ AL +N S R + VT KRT
Sbjct: 79 EHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 138
Query: 134 NVPGM 138
N+PGM
Sbjct: 139 NIPGM 143
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 15/124 (12%)
Query: 27 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-----------Q 75
E+E E+ L+Q+ K+ + S A + ++ +D++SVF+GN +
Sbjct: 17 EIEAESAILQQIQNKMAKHLES---AAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEE 73
Query: 76 HFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 134
HF+ CG + + TI DKF + K +AY+EF S +++ AL +N S R + VT KRTN
Sbjct: 74 HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 133
Query: 135 VPGM 138
+PGM
Sbjct: 134 IPGM 137
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 23 IRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-------- 74
+ KE AL++ A++ + + D A+ SS D RSVFVGN
Sbjct: 248 VVFKEESAATQALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEES 301
Query: 75 ---QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128
+HF CG++ V I DK G KG+ YV F +++V AL LN SEL GR+L+V
Sbjct: 302 AIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV 359
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 19/131 (14%)
Query: 23 IRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-------- 74
+ KE A AL++ A++ + D A S A+R D RSVFVGN
Sbjct: 246 VVFKEERAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYRVDES 299
Query: 75 ---QHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130
+HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V +
Sbjct: 300 ALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-M 358
Query: 131 KRTNVPGMKQH 141
+ N +KQ
Sbjct: 359 RSVNKEKLKQQ 369
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 19/131 (14%)
Query: 23 IRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGN-------- 74
+ K+ A AL++ A++ + D A S A+R D RSVFVGN
Sbjct: 252 VVFKDESAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYKIEDS 305
Query: 75 ---QHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130
+HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V +
Sbjct: 306 ALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-M 364
Query: 131 KRTNVPGMKQH 141
+ N +KQ
Sbjct: 365 RSVNKEKLKQQ 375
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 15/77 (19%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH 115
RSVFVGN +HF SCG + V I D K KG+AYV+F +V +AL
Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318
Query: 116 LNESEL---HGRQLKVT 129
LN+ ++ GR+L+VT
Sbjct: 319 LNDKKMAVGKGRKLRVT 335
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 16/78 (20%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEALH 115
RSVFVGN +HF+ CG + V IR K KG+AYV+F ++V +AL
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 356
Query: 116 LNESELH----GRQLKVT 129
L+E ++H R+L+++
Sbjct: 357 LHEKKIHEGKKARKLRIS 374
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 19/81 (23%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH 115
RSVFVGN +HF +CG++ V I D K KG+AYV+F + ++V +AL
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
Query: 116 LNES-------ELHGRQLKVT 129
LNE L R+L+VT
Sbjct: 288 LNEKPMISQNEHLKKRKLRVT 308
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 12/63 (19%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEALH 115
RS+FVGN +HF+ CG + V IR K KG+AYV+F ++V +AL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 116 LNE 118
LNE
Sbjct: 339 LNE 341
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 75 QHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128
+HF SCG + RV+I D + G KG AY++F + ++ +A LN S+L G L V
Sbjct: 571 EHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLGGYSLYV 625
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH 115
S+++FVGN Q FQ G V + T + G +G+ +VEF +EA ++AL
Sbjct: 448 SKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALE 507
Query: 116 LNESELHGRQLKVTVKR 132
L +L GR +++ + R
Sbjct: 508 LAGHDLMGRPVRLDLAR 524
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH 115
R VFVGN ++F CG+++ V I D K KG+AY++F + V +AL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 116 LNESEL-HGRQLKVTVKRTNVP 136
LNE ++ GR L++ ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 75 QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHG 123
+HF SCG + V++ D+ G KG AY+EF SE ++AL LN S++ G
Sbjct: 423 EHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALELNGSDMGG 470
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
Query: 52 PAAGGSSLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGY 99
PAAGGS +++F N F+ G V V T++ G +G+
Sbjct: 291 PAAGGS----------KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGF 340
Query: 100 AYVEFLQSEAVQEALHLNESELHGRQLKVTV 130
+VEF SE Q+AL + L GR++++ +
Sbjct: 341 GHVEFASSEEAQKALEFHGRPLLGREIRLDI 371
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 76 HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV---TVKR 132
+F+ GTV V I TD+ G KGY +V FL + VQ+ + ++ +HG++LK+ K+
Sbjct: 55 YFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-SQISVHGKRLKLGPAIRKQ 113
Query: 133 TNVPGMKQHRPRRPNP 148
N+ Q RP NP
Sbjct: 114 QNLCSYMQPRPLAFNP 129
>sp|Q80YT9|RBM11_MOUSE Splicing regulator RBM11 OS=Mus musculus GN=Rbm11 PE=1 SV=1
Length = 238
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 110
+EE D R+VFVGN + F G + +VT+ D+ G+PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESV 63
Query: 111 QEALH-LNESELHGRQLKV 128
A+ LN L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>sp|P57052|RBM11_HUMAN Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1
Length = 281
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 110
+EE D R+VFVGN + F G + +VTI D+ G+PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV 63
Query: 111 QEALH-LNESELHGRQLKV 128
A+ LN L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 76 HFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128
HF CG + RV++ D+ G KG AY++F + +AL L+ S+L G L V
Sbjct: 434 HFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYV 487
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEA 113
+S ++F+GN + FQ G V V + T + G +G+ +V+F SE ++A
Sbjct: 308 TESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKA 367
Query: 114 LHLNESELHGRQLKVTV 130
L L+ +L GR +++ +
Sbjct: 368 LELHGCDLDGRPVRLDL 384
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 76 HFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128
HF CG V RV + TD+ G +G+AY++ + EAL L+ SE+ G + V
Sbjct: 502 HFSKCGEVTRVHVPTDRETGASRGFAYIDL--TSGFDEALQLSGSEIGGGNIHV 553
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEA 109
N+ + S+++F GN F+ G V V + + G KGY ++EF E
Sbjct: 377 NQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEE 436
Query: 110 VQEALHLNESELHGRQLKV 128
Q+AL +N L GR +++
Sbjct: 437 AQKALEMNGKLLLGRDVRL 455
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH- 115
R++FVGN + F G V +V I DK G+PK +A+V F +V A++
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 116 LNESELHGRQLKVTVK 131
LN +L+GR +K+ +
Sbjct: 70 LNGIKLYGRPIKIQFR 85
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 24/135 (17%)
Query: 6 MDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEV 65
+D + E ++ ++ ++ EE +Q+ + GN S+ ++GG +
Sbjct: 60 LDRVLQEKHSIDTREVDVKRAMSREE----QQVSGRTGNLNTSR---SSGGDAYNK---- 108
Query: 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEA 113
++ +FVG Q+F+ G V V I D+ +P+G+ +V F +AV
Sbjct: 109 -TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Query: 114 LHLNESELHGRQLKV 128
LH +L G+Q++V
Sbjct: 168 LHKTFHDLSGKQVEV 182
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132
+ F+S G + RV + TD+ +PKGYA++E++ + ++ A + ++ GR++ V V+R
Sbjct: 156 REFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVER 215
Query: 133 -TNVPGMKQHRPRR 145
VP RPRR
Sbjct: 216 GRTVPNW---RPRR 226
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 57 SSLANREEV---DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAY 101
SSLA R+ RSVFVGN F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 102 VEFLQSEAVQEAL-HLNESELHGRQLKV 128
E+ E A+ +LN E GR L+V
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 57 SSLANREEV---DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAY 101
SSLA R+ RSVFVGN F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 102 VEFLQSEAVQEAL-HLNESELHGRQLKV 128
E+ E A+ +LN E GR L+V
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 12 ENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVF 71
ENKQV D +I ++ ++ TA A + ++ S A+ + D R +F
Sbjct: 3 ENKQV---DTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLF 59
Query: 72 VGN-----------QHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALHLNES 119
VG HF G + + ++TD + G+ +G+A++ F +EA+ + +E
Sbjct: 60 VGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEH 119
Query: 120 ELHGRQL 126
++ +++
Sbjct: 120 IINSKKV 126
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 66 DSRSVFVGNQ-------------HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 112
DS +VFV N F+ CG V ++ G +GY YVEF + ++ Q+
Sbjct: 702 DSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQ 761
Query: 113 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 142
AL L+ + GR + V+ V ++ P K R
Sbjct: 762 ALELDRKIVEGRPMFVSPCVDKSKNPDFKVFR 793
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 81 GTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQEALHLNESELHGRQLKVTVKRTNVPGMK 139
GTV + + T++ G+PKG AYVE+ +S+A Q + ++ + +KV + +N P K
Sbjct: 825 GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKVAI--SNPPQRK 882
Query: 140 QHRPRRPNPFMVYQSRGA-IIPPFLYSPYGYGKIPRFRMP 178
P +P V + GA ++P +Y G G+ +P
Sbjct: 883 V--PEKPE---VRTAPGAPMLPRQMYGARGKGRTQLSLLP 917
>sp|Q0JGS5|EAR1_ORYSJ Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica
GN=PLA2 PE=2 SV=1
Length = 683
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 51 DPAAGGSSLANREEVDSRSVFVGNQHFQSCGTVNRV---TIR-TDKFGQPKGYAYVEFLQ 106
D A SL + + SVF + FQ+ G V V +R ++KF VEF
Sbjct: 216 DDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKF--------VEFFD 267
Query: 107 SEAVQEALH-LNESELHGRQLKVTVKRTNVPGMKQ-----HRPRRPNP 148
+ ALH LN EL GR+L V R ++PG ++ H+P P P
Sbjct: 268 TRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQPLAPTP 315
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 94 GQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 128
G+PKGYA+VEF +E +EAL+ N +E+ GR +++
Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 71 FVGNQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128
F G ++ Q V+ V I G K + YV+FL +E + +AL LN +L G ++K+
Sbjct: 304 FFGKKNLQ----VSEVRI-----GSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKL 352
>sp|A2WY46|EAR1_ORYSI Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2
PE=2 SV=1
Length = 680
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 51 DPAAGGSSLANREEVDSRSVFVGNQHFQSCGTVNRV---TIR-TDKFGQPKGYAYVEFLQ 106
D A SL + + SVF + FQ+ G V V +R ++KF VEF
Sbjct: 216 DDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKF--------VEFFD 267
Query: 107 SEAVQEALH-LNESELHGRQLKVTVKRTNVPGMKQ-----HRPRRPNP 148
+ ALH LN EL GR+L V R ++PG ++ H+P P P
Sbjct: 268 TRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQPLAPTP 315
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 24/125 (19%)
Query: 62 REEVDSRSVFVGNQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE 120
++EVD + F + GT+ I TD+ G+ KG+ +V + E +A+ +N+
Sbjct: 372 QDEVDDERL---KAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Query: 121 LHGRQLKVT------VKRTNVPGMKQHRPRRPNPFMVYQ--SRGAIIP--------PFLY 164
L G+ L V V+R+ + Q R N F + Q + A IP P +Y
Sbjct: 429 LAGKPLYVALAQRKEVRRSQLEAQIQAR----NQFRLQQQVAAAAGIPAVQYGATGPLIY 484
Query: 165 SPYGY 169
P GY
Sbjct: 485 GPGGY 489
>sp|O57437|DAZLA_XENLA Deleted in azoospermia-like-A OS=Xenopus laevis GN=dazl-a PE=1 SV=1
Length = 286
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 43 GNEMASKQDPAAGGSSLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTD 91
N A+ ++ A + E+ +VFVG F G V V I TD
Sbjct: 8 SNYAATAEEEAVNQGFVLPEGEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITD 67
Query: 92 KFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRP---RRPNP 148
+ G KGY ++ F VQ+ + ++ HG++LK+ + Q RP P P
Sbjct: 68 RTGVSKGYGFISFSDEVDVQKIVK-SQISFHGKKLKLGPAIRKICTYVQPRPVVLSHPTP 126
Query: 149 F 149
F
Sbjct: 127 F 127
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 67 SRSVFVGN-----------QHFQSCGTVNRVTIRT-DKFGQPKGYAYVEFLQSEAVQEAL 114
SR +FVGN +HFQ CG + ++ + T + G+ KG+A+++F E AL
Sbjct: 238 SRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNAL 297
Query: 115 HLNES-ELHGRQLKV 128
++ GR L++
Sbjct: 298 KDKSCRKIAGRPLRM 312
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 85 RVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 126
RV + + KG+ Y+ F E ++ L L+ES L+GR +
Sbjct: 171 RVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNM 212
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH- 115
R++FVGN + F G V +V I DK G+PK +A+V F +V A++
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 116 LNESELHGRQLKVTVK 131
LN +L GR +K+ +
Sbjct: 70 LNGIKLFGRPIKIQFR 85
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 38 MHAKVGNEMASKQDPA-----AGGSSLANRE-EVDSRSVFVGNQHFQSCGTVNRVTIRTD 91
+ K+ M S++DP+ AG + N ++D+++++ F G + + TD
Sbjct: 101 IKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALY---DTFSVFGNILSSKVATD 157
Query: 92 KFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 128
+ G+ KG+ YV F + E+ EA+ LN L+G+++ V
Sbjct: 158 ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 38.5 bits (88), Expect = 0.027, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 7 DMIETENKQVELDDMKIRLK------------EMEEEATALRQMHAKVGNEMASKQDPAA 54
++ E E K+V D M+IRL E + EA A + + K G E+ +
Sbjct: 405 NITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 464
Query: 55 GGSSLANREEV---------DSRSVFVGNQHFQSCG--------TVNRVTIRTDKFGQPK 97
R+E +S+++ + N + + + + + G+PK
Sbjct: 465 YTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHGKPK 524
Query: 98 GYAYVEFLQSEAVQEALH-LNESELHGRQLKVTVKRTN 134
GYA++EF E +EAL+ N+ E+ GR +++ ++ +N
Sbjct: 525 GYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSN 562
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 46 MASKQDPAAGGSSLAN------REEVDSRSVFVGNQHFQSCGTVNRVTIRTDKFGQPKGY 99
M S +DP+ S N +D++++F + F S GT+ + D G+ KGY
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALF---ETFSSFGTILSCKVAMDVTGRSKGY 178
Query: 100 AYVEFLQSEAVQEAL-HLNESELHGRQLKV 128
+V+F + E+ Q A+ LN ++ +Q+ V
Sbjct: 179 GFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,758,009
Number of Sequences: 539616
Number of extensions: 2557890
Number of successful extensions: 8939
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 8707
Number of HSP's gapped (non-prelim): 382
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)