Query 029897
Match_columns 185
No_of_seqs 222 out of 2325
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.7 9.1E-17 2E-21 118.7 14.1 71 64-134 31-114 (144)
2 KOG0121 Nuclear cap-binding pr 99.5 3.7E-14 8.1E-19 100.5 5.6 80 65-144 34-126 (153)
3 KOG0113 U1 small nuclear ribon 99.5 1.6E-12 3.4E-17 103.9 15.2 78 63-140 97-187 (335)
4 KOG4209 Splicing factor RNPS1, 99.5 2.1E-13 4.6E-18 107.8 9.9 144 15-158 46-205 (231)
5 TIGR01659 sex-lethal sex-letha 99.5 7.2E-13 1.6E-17 110.8 12.8 70 65-134 191-275 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.3E-13 5E-18 113.6 9.5 70 65-134 267-349 (352)
7 KOG0107 Alternative splicing f 99.5 3.9E-13 8.4E-18 100.0 9.2 66 66-135 9-86 (195)
8 TIGR01645 half-pint poly-U bin 99.4 5.8E-13 1.3E-17 117.6 8.2 68 65-132 105-185 (612)
9 KOG4207 Predicted splicing fac 99.4 9.6E-13 2.1E-17 100.4 8.2 70 64-133 10-92 (256)
10 TIGR01659 sex-lethal sex-letha 99.4 7.3E-13 1.6E-17 110.8 8.2 72 62-133 102-186 (346)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.2E-12 2.6E-17 109.3 8.3 68 67-134 3-83 (352)
12 KOG0149 Predicted RNA-binding 99.4 5.4E-13 1.2E-17 103.4 5.4 70 63-132 8-89 (247)
13 KOG0148 Apoptosis-promoting RN 99.4 5E-12 1.1E-16 99.9 10.9 68 63-135 160-239 (321)
14 TIGR01648 hnRNP-R-Q heterogene 99.4 6E-12 1.3E-16 110.9 12.2 64 65-135 231-308 (578)
15 KOG0126 Predicted RNA-binding 99.3 1.1E-12 2.3E-17 98.3 4.8 72 60-131 28-112 (219)
16 PF00076 RRM_1: RNA recognitio 99.3 3.4E-12 7.4E-17 81.8 6.6 58 70-127 1-70 (70)
17 KOG0105 Alternative splicing f 99.3 5.3E-12 1.2E-16 94.9 8.4 67 65-133 4-82 (241)
18 KOG0130 RNA-binding protein RB 99.3 6.6E-12 1.4E-16 89.9 8.4 76 59-134 64-152 (170)
19 PLN03120 nucleic acid binding 99.3 4.3E-12 9.3E-17 101.0 7.8 66 66-133 3-79 (260)
20 KOG0125 Ataxin 2-binding prote 99.3 6.9E-12 1.5E-16 101.4 8.3 70 64-134 93-174 (376)
21 KOG0117 Heterogeneous nuclear 99.3 7.9E-12 1.7E-16 104.6 8.8 69 65-133 81-163 (506)
22 KOG0111 Cyclophilin-type pepti 99.3 1.8E-12 3.8E-17 99.8 4.5 70 65-134 8-90 (298)
23 TIGR01645 half-pint poly-U bin 99.3 1.5E-11 3.2E-16 108.8 9.8 70 66-135 203-285 (612)
24 KOG0122 Translation initiation 99.3 1.8E-11 3.8E-16 95.6 7.2 70 65-134 187-269 (270)
25 PF13893 RRM_5: RNA recognitio 99.2 2.9E-11 6.3E-16 74.9 6.5 53 75-131 3-56 (56)
26 PLN03121 nucleic acid binding 99.2 3.2E-11 6.9E-16 94.8 7.7 67 65-133 3-80 (243)
27 KOG0148 Apoptosis-promoting RN 99.2 2.9E-11 6.3E-16 95.6 7.2 72 63-134 58-142 (321)
28 TIGR01628 PABP-1234 polyadenyl 99.2 3E-11 6.4E-16 107.1 8.1 70 65-134 283-364 (562)
29 KOG0415 Predicted peptidyl pro 99.2 7.3E-11 1.6E-15 96.5 9.1 70 65-134 237-319 (479)
30 KOG0127 Nucleolar protein fibr 99.2 2.1E-11 4.5E-16 104.3 5.9 74 61-134 286-378 (678)
31 TIGR01622 SF-CC1 splicing fact 99.2 5E-11 1.1E-15 103.0 8.4 71 63-133 85-167 (457)
32 PF14259 RRM_6: RNA recognitio 99.2 1.3E-10 2.9E-15 74.8 7.7 58 70-127 1-70 (70)
33 TIGR01622 SF-CC1 splicing fact 99.2 7.6E-11 1.6E-15 101.9 8.2 67 67-133 186-265 (457)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1E-10 2.2E-15 102.4 8.9 69 65-133 293-374 (509)
35 PLN03213 repressor of silencin 99.2 5E-11 1.1E-15 101.2 6.6 67 65-134 8-88 (759)
36 TIGR01648 hnRNP-R-Q heterogene 99.2 1.7E-10 3.6E-15 101.9 9.8 67 65-131 56-135 (578)
37 TIGR01628 PABP-1234 polyadenyl 99.1 9.1E-11 2E-15 104.0 7.5 65 69-133 2-79 (562)
38 smart00361 RRM_1 RNA recogniti 99.1 1.5E-10 3.2E-15 75.1 6.4 51 79-129 15-70 (70)
39 KOG0145 RNA-binding protein EL 99.1 1.5E-10 3.4E-15 91.2 7.3 61 75-135 60-122 (360)
40 KOG0117 Heterogeneous nuclear 99.1 3.7E-10 8.1E-15 94.7 9.4 63 65-134 257-331 (506)
41 smart00362 RRM_2 RNA recogniti 99.1 3.7E-10 8E-15 71.6 6.5 60 69-129 1-72 (72)
42 KOG0131 Splicing factor 3b, su 99.0 1.8E-10 3.8E-15 86.4 4.2 68 65-132 7-87 (203)
43 KOG0144 RNA-binding protein CU 99.0 2.7E-10 5.9E-15 95.2 5.3 73 65-137 122-209 (510)
44 KOG0116 RasGAP SH3 binding pro 99.0 1.9E-09 4.2E-14 91.6 9.9 72 66-137 287-370 (419)
45 KOG0127 Nucleolar protein fibr 99.0 5.6E-10 1.2E-14 95.7 6.5 69 66-134 116-196 (678)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1E-09 2.2E-14 95.9 8.1 66 65-134 273-351 (481)
47 COG0724 RNA-binding proteins ( 99.0 9.2E-10 2E-14 86.8 7.2 66 67-132 115-193 (306)
48 KOG0146 RNA-binding protein ET 99.0 2.7E-10 6E-15 90.2 3.9 73 62-134 280-365 (371)
49 KOG0108 mRNA cleavage and poly 99.0 5E-10 1.1E-14 95.7 5.4 67 68-134 19-98 (435)
50 KOG0145 RNA-binding protein EL 99.0 2.9E-09 6.3E-14 84.1 8.2 69 64-132 275-356 (360)
51 KOG0124 Polypyrimidine tract-b 98.9 2.3E-09 4.9E-14 88.3 7.4 66 65-130 111-189 (544)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 2.4E-09 5.1E-14 93.5 7.5 63 66-133 1-77 (481)
53 KOG4212 RNA-binding protein hn 98.9 7.3E-09 1.6E-13 87.0 9.6 69 65-133 42-123 (608)
54 cd00590 RRM RRM (RNA recogniti 98.9 5.2E-09 1.1E-13 66.5 7.0 56 75-130 18-74 (74)
55 KOG0109 RNA-binding protein LA 98.9 8E-10 1.7E-14 88.4 3.3 60 68-134 3-74 (346)
56 KOG0147 Transcriptional coacti 98.9 2E-09 4.3E-14 92.3 5.4 67 65-131 276-355 (549)
57 smart00360 RRM RNA recognition 98.9 6.2E-09 1.3E-13 65.5 5.8 55 75-129 15-71 (71)
58 KOG4661 Hsp27-ERE-TATA-binding 98.8 8.8E-09 1.9E-13 89.0 7.0 70 65-134 403-485 (940)
59 KOG4206 Spliceosomal protein s 98.8 7.1E-09 1.5E-13 80.3 5.8 70 66-137 8-93 (221)
60 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 83.3 6.9 71 58-133 219-302 (377)
61 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.9E-08 4.1E-13 88.0 7.6 69 65-133 407-501 (509)
62 KOG0123 Polyadenylate-binding 98.7 2E-08 4.4E-13 84.7 6.2 62 70-133 79-152 (369)
63 KOG0114 Predicted RNA-binding 98.7 5.7E-08 1.2E-12 66.8 5.8 67 65-133 16-94 (124)
64 KOG0109 RNA-binding protein LA 98.6 4.1E-08 8.9E-13 78.7 4.9 64 64-134 75-150 (346)
65 KOG0144 RNA-binding protein CU 98.6 6.6E-08 1.4E-12 81.2 5.7 76 59-134 416-504 (510)
66 KOG0132 RNA polymerase II C-te 98.6 7.2E-08 1.6E-12 85.8 5.4 65 65-134 419-495 (894)
67 KOG4208 Nucleolar RNA-binding 98.6 2.1E-07 4.6E-12 71.2 6.7 59 75-133 68-129 (214)
68 KOG0110 RNA-binding protein (R 98.5 4.8E-08 1E-12 86.2 3.2 68 67-134 613-693 (725)
69 KOG4205 RNA-binding protein mu 98.5 6.8E-08 1.5E-12 79.4 3.7 69 66-134 5-85 (311)
70 KOG0123 Polyadenylate-binding 98.5 2.2E-07 4.7E-12 78.5 6.5 64 69-134 3-75 (369)
71 KOG0146 RNA-binding protein ET 98.5 1.4E-07 3E-12 75.0 4.8 70 65-134 17-101 (371)
72 KOG0110 RNA-binding protein (R 98.5 3.1E-07 6.8E-12 81.1 6.4 64 69-132 517-596 (725)
73 KOG1548 Transcription elongati 98.4 6E-07 1.3E-11 73.6 7.0 72 63-134 130-221 (382)
74 KOG4205 RNA-binding protein mu 98.4 4.8E-07 1E-11 74.5 5.9 69 66-134 96-176 (311)
75 KOG0131 Splicing factor 3b, su 98.4 1.9E-07 4.1E-12 70.3 3.2 69 65-133 94-176 (203)
76 KOG0124 Polypyrimidine tract-b 98.4 2.8E-07 6.1E-12 76.1 4.5 69 67-135 210-291 (544)
77 KOG0151 Predicted splicing reg 98.4 3E-06 6.5E-11 75.2 9.6 74 61-134 168-257 (877)
78 KOG0106 Alternative splicing f 98.1 2E-06 4.3E-11 67.1 3.4 60 68-134 2-73 (216)
79 KOG4454 RNA binding protein (R 98.1 6.5E-07 1.4E-11 69.3 0.6 67 66-133 8-86 (267)
80 KOG0226 RNA-binding proteins [ 98.0 2.4E-06 5.2E-11 67.5 2.1 67 64-130 187-266 (290)
81 KOG0533 RRM motif-containing p 98.0 1.5E-05 3.2E-10 63.5 5.8 69 65-133 81-161 (243)
82 KOG1457 RNA binding protein (c 98.0 7.7E-05 1.7E-09 58.2 9.3 72 64-135 31-119 (284)
83 KOG0147 Transcriptional coacti 98.0 2.1E-06 4.6E-11 74.1 0.7 71 61-131 173-255 (549)
84 KOG4212 RNA-binding protein hn 97.9 2E-05 4.4E-10 66.7 5.1 66 61-130 530-607 (608)
85 KOG1995 Conserved Zn-finger pr 97.7 0.00012 2.5E-09 60.6 6.8 71 64-134 63-154 (351)
86 COG5175 MOT2 Transcriptional r 97.7 0.00031 6.6E-09 57.9 8.8 57 75-131 139-200 (480)
87 KOG2314 Translation initiation 97.5 0.00024 5.3E-09 61.9 6.2 55 75-129 83-139 (698)
88 KOG4660 Protein Mei2, essentia 97.5 3.6E-05 7.9E-10 66.7 1.0 63 61-127 69-143 (549)
89 KOG1190 Polypyrimidine tract-b 97.5 0.00032 7E-09 59.1 6.2 64 67-134 297-373 (492)
90 KOG1456 Heterogeneous nuclear 97.3 0.0042 9.2E-08 52.0 11.0 56 75-134 141-199 (494)
91 KOG0120 Splicing factor U2AF, 97.3 0.00013 2.8E-09 63.5 2.2 69 65-133 287-368 (500)
92 PF11608 Limkain-b1: Limkain b 97.2 0.00061 1.3E-08 45.3 4.4 49 75-132 25-75 (90)
93 KOG1548 Transcription elongati 97.1 0.0035 7.6E-08 51.9 8.6 67 64-133 262-351 (382)
94 KOG4210 Nuclear localization s 97.0 0.00065 1.4E-08 55.6 3.6 69 66-134 183-264 (285)
95 PF04059 RRM_2: RNA recognitio 96.9 0.0049 1.1E-07 42.4 6.7 55 80-134 27-87 (97)
96 KOG0106 Alternative splicing f 96.8 0.00077 1.7E-08 52.7 2.3 59 65-130 97-167 (216)
97 PF08952 DUF1866: Domain of un 96.8 0.004 8.6E-08 45.8 5.5 53 75-134 55-107 (146)
98 KOG0120 Splicing factor U2AF, 96.7 0.0049 1.1E-07 53.9 6.4 57 75-131 428-489 (500)
99 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0028 6.1E-08 38.6 3.5 35 75-114 19-53 (53)
100 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0077 1.7E-07 41.6 5.6 58 75-132 24-90 (100)
101 KOG1456 Heterogeneous nuclear 96.3 0.019 4.1E-07 48.2 7.6 66 65-134 285-363 (494)
102 KOG4206 Spliceosomal protein s 96.3 0.01 2.3E-07 46.4 5.5 65 64-132 143-220 (221)
103 KOG4849 mRNA cleavage factor I 96.2 0.025 5.4E-07 47.1 7.3 64 66-129 79-157 (498)
104 KOG4211 Splicing factor hnRNP- 96.1 0.013 2.8E-07 50.6 5.8 58 75-134 29-86 (510)
105 KOG2202 U2 snRNP splicing fact 95.7 0.0034 7.3E-08 50.0 0.3 53 79-131 92-145 (260)
106 KOG0129 Predicted RNA-binding 95.3 0.03 6.6E-07 48.7 4.8 65 64-129 367-449 (520)
107 KOG4211 Splicing factor hnRNP- 95.3 0.02 4.3E-07 49.5 3.6 57 75-131 122-179 (510)
108 PRK11634 ATP-dependent RNA hel 95.0 0.17 3.8E-06 46.0 9.2 36 97-133 526-562 (629)
109 PF08777 RRM_3: RNA binding mo 95.0 0.032 6.9E-07 38.9 3.5 50 75-129 20-75 (105)
110 KOG1855 Predicted RNA-binding 94.9 0.029 6.3E-07 47.8 3.5 56 61-116 225-305 (484)
111 KOG1996 mRNA splicing factor [ 94.8 0.066 1.4E-06 43.7 5.3 57 75-131 305-364 (378)
112 KOG1190 Polypyrimidine tract-b 94.7 0.04 8.7E-07 46.8 4.0 62 68-133 151-227 (492)
113 KOG2068 MOT2 transcription fac 94.7 0.023 5.1E-07 46.9 2.5 59 75-133 99-162 (327)
114 KOG4307 RNA binding protein RB 93.4 0.18 4E-06 45.7 5.7 56 75-130 886-943 (944)
115 KOG0128 RNA-binding protein SA 93.4 0.023 5E-07 52.1 0.1 67 67-133 736-814 (881)
116 KOG2135 Proteins containing th 92.5 0.063 1.4E-06 46.4 1.5 54 75-133 392-445 (526)
117 KOG0112 Large RNA-binding prot 92.4 0.094 2E-06 48.6 2.5 67 63-134 451-531 (975)
118 KOG1457 RNA binding protein (c 92.1 0.074 1.6E-06 41.9 1.3 51 68-121 211-273 (284)
119 KOG4285 Mitotic phosphoprotein 91.4 0.27 5.9E-06 40.3 3.8 52 75-131 215-267 (350)
120 KOG3152 TBP-binding protein, a 90.8 0.097 2.1E-06 41.9 0.8 60 66-125 73-157 (278)
121 PF03880 DbpA: DbpA RNA bindin 90.7 0.62 1.3E-05 30.1 4.4 42 82-131 32-74 (74)
122 KOG2416 Acinus (induces apopto 90.6 0.12 2.7E-06 45.8 1.3 65 63-132 440-520 (718)
123 KOG0115 RNA-binding protein p5 89.7 0.26 5.7E-06 39.5 2.4 64 68-131 32-111 (275)
124 PF15023 DUF4523: Protein of u 89.3 0.74 1.6E-05 33.9 4.2 50 75-131 109-159 (166)
125 KOG4676 Splicing factor, argin 89.0 0.34 7.5E-06 41.1 2.7 57 75-131 26-86 (479)
126 KOG2253 U1 snRNP complex, subu 88.4 0.27 5.8E-06 44.2 1.7 62 61-130 34-107 (668)
127 KOG0129 Predicted RNA-binding 88.3 1.3 2.8E-05 38.9 5.7 51 63-114 255-323 (520)
128 KOG0128 RNA-binding protein SA 87.2 0.039 8.4E-07 50.7 -4.2 57 67-123 667-735 (881)
129 PF04847 Calcipressin: Calcipr 84.8 1.4 3E-05 33.8 3.8 54 75-133 14-70 (184)
130 KOG1365 RNA-binding protein Fu 84.8 0.72 1.6E-05 39.2 2.4 59 75-133 299-361 (508)
131 KOG0112 Large RNA-binding prot 82.4 0.21 4.7E-06 46.3 -1.8 66 63-128 368-445 (975)
132 KOG4307 RNA binding protein RB 81.6 0.93 2E-05 41.3 1.9 65 66-130 433-510 (944)
133 KOG4574 RNA-binding protein (c 79.2 0.79 1.7E-05 42.6 0.7 55 75-134 317-374 (1007)
134 PF08675 RNA_bind: RNA binding 78.5 4.4 9.6E-05 27.0 3.9 36 75-117 27-63 (87)
135 KOG1365 RNA-binding protein Fu 78.4 0.92 2E-05 38.6 0.8 55 75-129 180-238 (508)
136 PF10309 DUF2414: Protein of u 76.8 4.7 0.0001 25.3 3.5 43 68-116 6-62 (62)
137 KOG4210 Nuclear localization s 75.7 2.6 5.7E-05 34.6 2.8 66 66-131 87-165 (285)
138 PF11767 SET_assoc: Histone ly 74.6 5.7 0.00012 25.2 3.5 31 97-128 34-65 (66)
139 PF07576 BRAP2: BRCA1-associat 73.7 13 0.00028 26.0 5.5 41 82-123 40-81 (110)
140 KOG4660 Protein Mei2, essentia 65.5 13 0.00028 33.1 4.9 55 80-134 413-473 (549)
141 PF04889 Cwf_Cwc_15: Cwf15/Cwc 62.2 17 0.00037 29.2 4.7 20 13-32 143-162 (244)
142 KOG4454 RNA binding protein (R 57.2 3.4 7.3E-05 32.7 -0.1 47 75-121 103-150 (267)
143 KOG4483 Uncharacterized conser 56.9 60 0.0013 28.1 7.2 41 75-121 410-451 (528)
144 KOG2193 IGF-II mRNA-binding pr 55.3 7.5 0.00016 33.7 1.7 38 96-133 36-75 (584)
145 KOG4676 Splicing factor, argin 52.7 5.9 0.00013 33.9 0.6 71 58-128 43-124 (479)
146 KOG4019 Calcineurin-mediated s 52.3 6.2 0.00013 30.2 0.6 56 75-135 34-91 (193)
147 KOG0105 Alternative splicing f 52.0 1E+02 0.0023 23.9 7.2 52 65-122 113-176 (241)
148 KOG1999 RNA polymerase II tran 48.1 1.5E+02 0.0032 28.7 8.8 27 96-122 209-236 (1024)
149 PF11532 HnRNP_M: Heterogeneou 42.1 9.5 0.00021 20.0 0.2 8 177-184 17-24 (30)
150 KOG3228 Uncharacterized conser 41.7 67 0.0015 24.9 4.8 19 15-33 125-143 (226)
151 PF07292 NID: Nmi/IFP 35 domai 41.4 39 0.00085 22.7 3.1 31 100-130 1-33 (88)
152 PF04889 Cwf_Cwc_15: Cwf15/Cwc 40.5 51 0.0011 26.5 4.2 14 7-20 140-153 (244)
153 PF02714 DUF221: Domain of unk 29.4 70 0.0015 26.2 3.5 32 100-133 1-33 (325)
154 PF10567 Nab6_mRNP_bdg: RNA-re 29.3 54 0.0012 27.1 2.7 57 75-131 34-105 (309)
155 PF03439 Spt5-NGN: Early trans 24.3 1.9E+02 0.0042 18.8 4.3 25 96-120 43-68 (84)
156 PRK10590 ATP-dependent RNA hel 20.6 5.4E+02 0.012 22.3 7.5 8 97-104 342-349 (456)
157 PF08206 OB_RNB: Ribonuclease 20.0 75 0.0016 19.1 1.5 11 96-106 7-17 (58)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=9.1e-17 Score=118.67 Aligned_cols=71 Identities=25% Similarity=0.556 Sum_probs=66.1
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...+++|||+| ++|++||.|.+|.|+.++ +++++|||||+|.+.++|+.|| .||++.|.|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45677999999 999999999999999998 5999999999999999999999 8999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+...
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 9764
No 2
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.7e-14 Score=100.45 Aligned_cols=80 Identities=28% Similarity=0.602 Sum_probs=69.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
..++|||||| ++|+++|.|..|-+-.|+. -.++|||||+|-+.++|..|| -++++.|+.++|+|+|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4578999999 9999999999998888885 789999999999999999999 89999999999999998
Q ss_pred CCCCCCCCCCCCC
Q 029897 132 RTNVPGMKQHRPR 144 (185)
Q Consensus 132 ~~~~~~~~~~r~~ 144 (185)
-.-..+.+.+||.
T Consensus 114 ~GF~eGRQyGRG~ 126 (153)
T KOG0121|consen 114 AGFVEGRQYGRGK 126 (153)
T ss_pred ccchhhhhhcCCC
Confidence 6655555555443
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.6e-12 Score=103.89 Aligned_cols=78 Identities=24% Similarity=0.469 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
...+-+||||+. ..|+.||.|+.|+||.|+ +|+++|||||+|.++.+...|. ..+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346789999996 899999999999999998 7999999999999999999999 899999999999999
Q ss_pred ecCCCCCCCCC
Q 029897 130 VKRTNVPGMKQ 140 (185)
Q Consensus 130 ~a~~~~~~~~~ 140 (185)
..+......+.
T Consensus 177 vERgRTvkgW~ 187 (335)
T KOG0113|consen 177 VERGRTVKGWL 187 (335)
T ss_pred ecccccccccc
Confidence 88665433333
No 4
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=2.1e-13 Score=107.78 Aligned_cols=144 Identities=41% Similarity=0.593 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC---CCCCCCCcCCCCCCEEEEcC-----------cCccCC
Q 029897 15 QVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAA---GGSSLANREEVDSRSVFVGN-----------QHFQSC 80 (185)
Q Consensus 15 ~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vfVgn-----------~~F~~~ 80 (185)
.-++........++|.+..+++.++..+.+.+...+.+.. ...........+.+.|||+| .+|+.|
T Consensus 46 ~~~i~~~~~~~~e~e~~i~~le~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~C 125 (231)
T KOG4209|consen 46 NFKISANYNRSSEKEWEITKLERMCPATVKPLMDLSLKAAVVVKEKFPERQKEVDAPSVWVGNVDFLVTLTKIELHFESC 125 (231)
T ss_pred CcccchhhcccccchhhhHHHHhhchhhhhhhhhcccccchhhhhcchhhhhccCCceEEEeccccccccchhhheeecc
Confidence 4456666777778899999999988887775443332211 11223345667889999999 889999
Q ss_pred CceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q 029897 81 GTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP-NPFMVYQSRGAI 158 (185)
Q Consensus 81 G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~~~~~~~~~r~~~~-~~~~g~~~~~~~ 158 (185)
|.|..+.|+.|+. +.++||+||+|.+.+.+..||.|++..|.++.|.|.+.+.+.++..+...+++ .+.++++++-+.
T Consensus 126 g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~~pg~~~~~~~~~~~~~~~f~~~~~~ 205 (231)
T KOG4209|consen 126 GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTNVPGMGRSSPPRRTSPRWTFRLEWPP 205 (231)
T ss_pred CCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeeecCCcCCCCCCcccCCCCccccccCC
Confidence 9999999999996 78999999999999999999999999999999999999888777766554433 224445544333
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=7.2e-13 Score=110.79 Aligned_cols=70 Identities=31% Similarity=0.529 Sum_probs=63.3
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCC--eEeEEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKVT 129 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g--r~i~V~ 129 (185)
...++|||+| ++|++||.|+.|+|+.++ +++++|||||+|.+.++|++|| .||++.|.+ ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3457899999 899999999999999998 5999999999999999999999 999998865 789999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 98664
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=2.3e-13 Score=113.60 Aligned_cols=70 Identities=33% Similarity=0.426 Sum_probs=64.8
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
..+++|||+| ++|++||.|..|+|+.|+ ++.++|||||+|.+.++|..|| .|||..|+||.|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 4456899999 899999999999999998 6999999999999999999999 99999999999999998
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 653
No 7
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.9e-13 Score=100.01 Aligned_cols=66 Identities=26% Similarity=0.579 Sum_probs=60.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
-.++||||| .+|..||.|..|+|... +.|||||+|.+..+|..|+ .|+|..|.|..|+|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 467999999 88999999999999875 6899999999999999999 9999999999999999866
Q ss_pred CC
Q 029897 134 NV 135 (185)
Q Consensus 134 ~~ 135 (185)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 53
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.41 E-value=5.8e-13 Score=117.63 Aligned_cols=68 Identities=34% Similarity=0.540 Sum_probs=63.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|.+|+|+.|+ +++++|||||+|.+.++|..|| .||+..|.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4568999999 899999999999999998 5999999999999999999999 89999999999999865
Q ss_pred C
Q 029897 132 R 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 9
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=9.6e-13 Score=100.37 Aligned_cols=70 Identities=31% Similarity=0.520 Sum_probs=63.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....+|-|-| .+|++||.|-+|.|+.|+ +..++|||||-|.+..+|+.|| +|+|.+|+|+.|.|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34456788888 899999999999999999 6999999999999999999999 9999999999999999
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 854
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.41 E-value=7.3e-13 Score=110.76 Aligned_cols=72 Identities=28% Similarity=0.447 Sum_probs=65.9
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
......++|||+| ++|+.||.|++|+|+.|. +++++|||||+|.++++|.+|| .|+++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3445788999999 899999999999999997 5999999999999999999999 89999999999999
Q ss_pred EecCC
Q 029897 129 TVKRT 133 (185)
Q Consensus 129 ~~a~~ 133 (185)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 88754
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=1.2e-12 Score=109.30 Aligned_cols=68 Identities=28% Similarity=0.534 Sum_probs=63.7
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..+|||+| .+|++||.|.+|+|+.++ +++++|||||+|.+.++|.+|| .||+..|.|++|+|.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 46899999 999999999999999998 5999999999999999999999 8999999999999998865
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 83 ~ 83 (352)
T TIGR01661 83 S 83 (352)
T ss_pred c
Confidence 4
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.4e-13 Score=103.43 Aligned_cols=70 Identities=27% Similarity=0.498 Sum_probs=62.7
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
.+..-.+||||| ++|++||+|+++.|+.|+ ++++|||+||+|.+.++|.+|+.--.-.|+||+.+|.+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 345567899999 999999999999999999 49999999999999999999996666779999999988
Q ss_pred cC
Q 029897 131 KR 132 (185)
Q Consensus 131 a~ 132 (185)
|-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 73
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5e-12 Score=99.92 Aligned_cols=68 Identities=32% Similarity=0.606 Sum_probs=63.2
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...++++||||| +.|+.||.|.+|+|.++ +||+||.|.+.+.|..|| .+|+++|.|+.++|.|
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 346789999999 89999999999999987 899999999999999999 9999999999999999
Q ss_pred cCCCC
Q 029897 131 KRTNV 135 (185)
Q Consensus 131 a~~~~ 135 (185)
-+...
T Consensus 235 GKe~~ 239 (321)
T KOG0148|consen 235 GKEGD 239 (321)
T ss_pred cccCC
Confidence 87754
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.37 E-value=6e-12 Score=110.95 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=57.7
Q ss_pred CCCCEEEEcC-----------cCccCC--CceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSC--GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~--G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...++|||+| ++|++| |.|+.|+++ ++||||+|.+.++|.+|| .||+..|.|+.|+|++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999 899999 999999875 569999999999999999 8999999999999999
Q ss_pred cCCCC
Q 029897 131 KRTNV 135 (185)
Q Consensus 131 a~~~~ 135 (185)
+++..
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 97753
No 15
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.1e-12 Score=98.30 Aligned_cols=72 Identities=25% Similarity=0.460 Sum_probs=64.8
Q ss_pred CCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 60 ~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
+...-.++.-||||| ..|++||+|+.|.|++|+ +|+++||||+.|.+..+.--|+ .|||..|.||.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 344446677899999 889999999999999999 5999999999999999999999 999999999999
Q ss_pred EEEec
Q 029897 127 KVTVK 131 (185)
Q Consensus 127 ~V~~a 131 (185)
+|+..
T Consensus 108 rVDHv 112 (219)
T KOG0126|consen 108 RVDHV 112 (219)
T ss_pred Eeeec
Confidence 99754
No 16
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=3.4e-12 Score=81.78 Aligned_cols=58 Identities=34% Similarity=0.755 Sum_probs=54.6
Q ss_pred EEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 70 VFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 70 vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
|||+| .+|++||.|..+.|+.+.++..++||||+|.+.++|+.|+ .|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 78999 9999999999999999866899999999999999999999 7999999999885
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=5.3e-12 Score=94.89 Aligned_cols=67 Identities=25% Similarity=0.535 Sum_probs=58.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|.+||.|..|.|-.. ....+||||+|++..+|+.|| .-++..++|..|+|++++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4568999999 89999999999988322 345789999999999999999 899999999999999986
Q ss_pred C
Q 029897 133 T 133 (185)
Q Consensus 133 ~ 133 (185)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 5
No 18
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=6.6e-12 Score=89.92 Aligned_cols=76 Identities=28% Similarity=0.452 Sum_probs=69.5
Q ss_pred CCCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE
Q 029897 59 LANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 125 (185)
Q Consensus 59 ~~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~ 125 (185)
..++....+..|||.+ ..|..||+|+.|.|-.|+ +|..+|||+|+|.+.+.|++|+ .||+..|.|++
T Consensus 64 pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 64 PGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 3455667889999999 889999999999999998 7999999999999999999999 99999999999
Q ss_pred eEEEecCCC
Q 029897 126 LKVTVKRTN 134 (185)
Q Consensus 126 i~V~~a~~~ 134 (185)
|.|+|+-..
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999999554
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=4.3e-12 Score=100.99 Aligned_cols=66 Identities=23% Similarity=0.414 Sum_probs=60.6
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
..++|||+| +||+.||.|.+|.|+.++ ..+|||||+|.+.++|..||.|++..|.|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 357999999 999999999999999885 357999999999999999999999999999999999864
No 20
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=6.9e-12 Score=101.42 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=63.2
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....++|+|+| .+|++||.|.+|.|+.+. .-+|||+||+|++.++|++|- +|||..|.||+|.|..|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34567899999 899999999999999874 558999999999999999999 99999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 554
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7.9e-12 Score=104.60 Aligned_cols=69 Identities=35% Similarity=0.582 Sum_probs=63.3
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~~ 130 (185)
..++.||||. -+|++.|+|..++|++|+ +|.+||||||+|.+.+.|++|| .||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 6789999998 788999999999999998 5999999999999999999999 99999995 89999876
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 644
No 22
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.8e-12 Score=99.85 Aligned_cols=70 Identities=30% Similarity=0.618 Sum_probs=65.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++||||+ ..|-.||.|..|.|+.|- +.+.|||+||+|...++|..|| .||+.+|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4567999999 889999999999999998 5999999999999999999999 99999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 875
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=1.5e-11 Score=108.80 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=64.9
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..++|||+| .+|+.||.|.+|+|+.++. ++++|||||+|.+.++|.+|| .||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 357999999 8999999999999999985 899999999999999999999 999999999999999997
Q ss_pred CCC
Q 029897 133 TNV 135 (185)
Q Consensus 133 ~~~ 135 (185)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 654
No 24
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.8e-11 Score=95.56 Aligned_cols=70 Identities=30% Similarity=0.463 Sum_probs=65.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+..+|=|.| ++|.+||.|..|.|.+|+ +|.++|||||+|.+.++|.+|| .|||+-++.--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678899999 899999999999999999 5999999999999999999999 99999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 25
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=2.9e-11 Score=74.85 Aligned_cols=53 Identities=38% Similarity=0.681 Sum_probs=47.3
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+|++||.|..+.+.... +++|||+|.+.++|..|+ .||+..|.|++|+|.+|
T Consensus 3 ~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 3 KLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred HHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 369999999999997653 699999999999999999 89999999999999985
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.2e-11 Score=94.77 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=60.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
..+.+|||+| +||+.||.|.+|+|+.+ +..++||||+|.+++.+..||.|+|..|.+++|.|..+..
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 3568999999 99999999999999988 4556899999999999999999999999999999987643
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.9e-11 Score=95.63 Aligned_cols=72 Identities=26% Similarity=0.473 Sum_probs=65.1
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.......|||+. +.|.+||+|.+++|++|. ++++|||+||.|...++|++|| .|||.-|++|.|+-.
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 334466799987 899999999999999998 5999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
||..+
T Consensus 138 WATRK 142 (321)
T KOG0148|consen 138 WATRK 142 (321)
T ss_pred ccccC
Confidence 99544
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=3e-11 Score=107.13 Aligned_cols=70 Identities=23% Similarity=0.516 Sum_probs=65.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
....+|||+| ++|++||.|.+|+|+.+.++.++|||||+|.+.++|.+|| .||+..|+|++|.|.+|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4567899999 9999999999999999977999999999999999999999 999999999999999986
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
.+
T Consensus 363 ~k 364 (562)
T TIGR01628 363 RK 364 (562)
T ss_pred Cc
Confidence 53
No 29
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.3e-11 Score=96.54 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=63.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+...|||.- -+|+.||.|.+|.|++|+ +|.+..||||+|.+.+++++|. +|++..|+.+.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4456799985 789999999999999998 6999999999999999999999 99999999999999987
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
...
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 543
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.1e-11 Score=104.34 Aligned_cols=74 Identities=36% Similarity=0.533 Sum_probs=64.5
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hc-----CC-cee
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HL-----NE-SEL 121 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l-----~~-~~i 121 (185)
.......++|||.| .+|++||.|..+.|+.++ ++.++|.|||.|.+..++.+|| .. .+ ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 34456679999999 899999999999999999 5999999999999999999999 44 23 568
Q ss_pred CCeEeEEEecCCC
Q 029897 122 HGRQLKVTVKRTN 134 (185)
Q Consensus 122 ~gr~i~V~~a~~~ 134 (185)
.||.|+|..|-++
T Consensus 366 ~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 366 DGRLLKVTLAVTR 378 (678)
T ss_pred eccEEeeeeccch
Confidence 9999999988664
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.20 E-value=5e-11 Score=102.99 Aligned_cols=71 Identities=38% Similarity=0.535 Sum_probs=64.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| ++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.|++..|.|++|.|..
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 345678999999 899999999999999998 49999999999999999999999999999999999987
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 643
No 32
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=1.3e-10 Score=74.82 Aligned_cols=58 Identities=40% Similarity=0.736 Sum_probs=53.4
Q ss_pred EEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 70 VFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 70 vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
|||+| .+|+.||.|..+.+..++.+..+++|||+|.+.++|..|+ .+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 67888 8999999999999999877889999999999999999999 7788999999874
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=7.6e-11 Score=101.88 Aligned_cols=67 Identities=34% Similarity=0.622 Sum_probs=63.1
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
.++|||+| .+|++||.|..|.|+.+.. ++++|||||+|.+.++|..|| .|++..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999 8999999999999999985 799999999999999999999 8999999999999999753
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=1e-10 Score=102.36 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=63.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| ++|+.||.|..+.|+.+. ++.++|||||+|.+.+.|..|| .|++..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3467999999 799999999999999997 5999999999999999999999 99999999999999998
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.17 E-value=5e-11 Score=101.15 Aligned_cols=67 Identities=22% Similarity=0.436 Sum_probs=59.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCH--HHHHHHH-hcCCceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS--EAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~--~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...-+||||| .+|..||.|..|.|++. +| ||||||+|.+. .++.+|| .|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4457899999 89999999999999943 35 99999999987 7899999 9999999999999998
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8775
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.16 E-value=1.7e-10 Score=101.90 Aligned_cols=67 Identities=36% Similarity=0.584 Sum_probs=60.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~~a 131 (185)
...++|||+| .+|++||.|.+|+|++|.+++++|||||+|.+.++|++|| .||+..|. ++.|.|..+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3568999999 8999999999999999977999999999999999999999 89999985 787777655
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=9.1e-11 Score=104.03 Aligned_cols=65 Identities=28% Similarity=0.545 Sum_probs=61.3
Q ss_pred EEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 69 SVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 69 ~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
+|||+| ++|++||.|.+|+|++|.. ++++|||||+|.+.++|.+|| .|++..|.|++|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999 9999999999999999984 999999999999999999999 9999999999999998753
No 38
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.5e-10 Score=75.08 Aligned_cols=51 Identities=29% Similarity=0.494 Sum_probs=45.8
Q ss_pred CCCceeEEE-EeeCC-C--CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 79 SCGTVNRVT-IRTDK-F--GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 79 ~~G~i~~~~-i~~~~-~--~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
+||.|.+|. |+.++ + +.++||+||+|.+.++|.+|+ .|||..|.|+.|++.
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 899999995 66665 4 889999999999999999999 999999999999863
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.5e-10 Score=91.25 Aligned_cols=61 Identities=28% Similarity=0.543 Sum_probs=58.7
Q ss_pred cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCCC
Q 029897 75 QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 135 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~~ 135 (185)
.+|...|+|++|+|++|+ +|.+.||+||.|.++++|++|+ .|||..|..+.|+|++|++..
T Consensus 60 SLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs 122 (360)
T KOG0145|consen 60 SLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSS 122 (360)
T ss_pred HHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCCh
Confidence 899999999999999999 5999999999999999999999 999999999999999999864
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=3.7e-10 Score=94.70 Aligned_cols=63 Identities=32% Similarity=0.549 Sum_probs=58.3
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..-+.|||.| ++|++||.|+.|+.++| ||||+|.+.++|.+|+ .+|+++|+|..|.|.+|+
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3457899999 89999999999988765 9999999999999999 999999999999999998
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 86
No 41
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=3.7e-10 Score=71.57 Aligned_cols=60 Identities=42% Similarity=0.772 Sum_probs=54.0
Q ss_pred EEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 69 SVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 69 ~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
+|||+| .+|.+||.|..+.++.+. +.++++|||+|.+.+.|..|+ .+++..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 477887 889999999999998876 778999999999999999999 899999999998873
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.05 E-value=1.8e-10 Score=86.43 Aligned_cols=68 Identities=29% Similarity=0.514 Sum_probs=62.8
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....||||+| ++|-+.|+|..++|++|+ +...+|||||+|.++++|+=|+ -||...|.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3456999999 889999999999999999 5889999999999999999999 89999999999999988
Q ss_pred C
Q 029897 132 R 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 5
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.7e-10 Score=95.19 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=65.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCce-eC--CeEeEEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE-LH--GRQLKVT 129 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~-i~--gr~i~V~ 129 (185)
.+.++|||+- ++|++||.|++|.|++|..+.+||||||.|.+.+.|..|| .||+.. +. ..+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 4578999996 8999999999999999999999999999999999999999 999865 44 4789999
Q ss_pred ecCCCCCC
Q 029897 130 VKRTNVPG 137 (185)
Q Consensus 130 ~a~~~~~~ 137 (185)
||.+.++.
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99887543
No 44
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.02 E-value=1.9e-09 Score=91.60 Aligned_cols=72 Identities=32% Similarity=0.521 Sum_probs=60.2
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
...+|||.| ++|..||.|+...|..-. .++..+||||+|.+...+..||..+...|++++|.|+..++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 455699999 999999999998887654 45555999999999999999997778889999999998877
Q ss_pred CCCC
Q 029897 134 NVPG 137 (185)
Q Consensus 134 ~~~~ 137 (185)
...+
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5433
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=5.6e-10 Score=95.72 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=63.8
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
+-.+|.|.| .+|+.||.|..|.|++..+++.+|||||.|....+|.+|| .+|+..|+||+|.|+||-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 367899999 8999999999999998778888899999999999999999 9999999999999999955
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 3
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.01 E-value=1e-09 Score=95.87 Aligned_cols=66 Identities=29% Similarity=0.393 Sum_probs=60.6
Q ss_pred CCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
..+++|||+| .+|+.||.|..|+|+.+ .+|||||+|.+.++|..|| .||+..|.|++|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999 89999999999999987 3799999999999999999 89999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 653
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.01 E-value=9.2e-10 Score=86.80 Aligned_cols=66 Identities=39% Similarity=0.750 Sum_probs=62.8
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.++|||+| .+|..||.|..|.|+.++ ++.++|||||+|.+.+.|..|+ .+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 69999999 999999999999999997 6999999999999999999999 999999999999999864
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=2.7e-10 Score=90.16 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=67.2
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.+..++|+|||=- ..|-.||.|.+.+|..|+ ++.+|+|+||.|++..++..|| .|||+.|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3557899999986 788999999999999999 6999999999999999999999 99999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.+.+++
T Consensus 360 QLKRPk 365 (371)
T KOG0146|consen 360 QLKRPK 365 (371)
T ss_pred hhcCcc
Confidence 988775
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.00 E-value=5e-10 Score=95.68 Aligned_cols=67 Identities=37% Similarity=0.694 Sum_probs=63.5
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
++||||| .+|+..|.|.+++++.|+ +|+++||+|++|.+.+.+..|+ .||+.++.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999 899999999999999999 5999999999999999999999 99999999999999998543
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=2.9e-09 Score=84.14 Aligned_cols=69 Identities=29% Similarity=0.396 Sum_probs=63.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...+..|||=| ++|.+||.|..|+|++|-+ .++|||+||++.+-++|..|| .|||..+.+|.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 34578899999 9999999999999999986 999999999999999999999 9999999999999998
Q ss_pred cC
Q 029897 131 KR 132 (185)
Q Consensus 131 a~ 132 (185)
..
T Consensus 355 Kt 356 (360)
T KOG0145|consen 355 KT 356 (360)
T ss_pred ec
Confidence 64
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.3e-09 Score=88.26 Aligned_cols=66 Identities=35% Similarity=0.561 Sum_probs=61.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...|+||||. ..|..||.|++|.+..|. +++.+|||||+|.-++.|.-|| .||+..++||.|+|..
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3467899998 889999999999999998 6999999999999999999999 9999999999999974
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.93 E-value=2.4e-09 Score=93.51 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-h--cCCceeCCeEeEEEec
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-H--LNESELHGRQLKVTVK 131 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~--l~~~~i~gr~i~V~~a 131 (185)
++++|||+| ++|++||.|..|.|+.+ ++||||+|.+.++|.+|| . +++..|.|++|.|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 367999999 89999999999999864 689999999999999999 5 5789999999999988
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 53
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.92 E-value=7.3e-09 Score=87.02 Aligned_cols=69 Identities=39% Similarity=0.576 Sum_probs=61.9
Q ss_pred CCCCEEEEcC-----------cCc-cCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHF-QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F-~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...+.+||+| .+| ++.|+|+.|.|..|.+++++|+|.|+|.+++.+++|+ .||.+.++||+|.|+..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4456799999 555 4789999999999999999999999999999999999 99999999999999876
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 43
No 54
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=5.2e-09 Score=66.52 Aligned_cols=56 Identities=43% Similarity=0.640 Sum_probs=51.4
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.+|..||.|..+.+..+....++++|||+|.+.+.|..|+ .+++..+.++.|.|.+
T Consensus 18 ~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 18 ELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 8899999999999998876678999999999999999999 9999999999998863
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.91 E-value=8e-10 Score=88.37 Aligned_cols=60 Identities=27% Similarity=0.547 Sum_probs=55.2
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
.+||||| .+|++||+|+.|.|+++ |+||+.++...+..|| .|++.+|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3799999 88999999999999865 9999999999999999 89999999999999987654
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.90 E-value=2e-09 Score=92.33 Aligned_cols=67 Identities=36% Similarity=0.663 Sum_probs=61.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+...|||+| .+|+.||.|+.|.+++|. +|.++||+||+|.+.+.|.+|+ .|||.+|-||.|+|..-
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3444499999 899999999999999998 7999999999999999999999 99999999999998654
No 57
>smart00360 RRM RNA recognition motif.
Probab=98.87 E-value=6.2e-09 Score=65.53 Aligned_cols=55 Identities=44% Similarity=0.699 Sum_probs=50.5
Q ss_pred cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 75 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.+|.+||.|..+.+..++. +.++|+|||+|.+.+.|..|+ .|++..+.|+.|.|.
T Consensus 15 ~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 15 ELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6789999999999998874 889999999999999999999 899999999998873
No 58
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=8.8e-09 Score=89.02 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=63.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
..+++|||.+ .+|++||.|+..+|+++. +---+||+||++.+..+|.+|| .|+.++|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4578899999 899999999999999986 5556899999999999999999 99999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 654
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.82 E-value=7.1e-09 Score=80.28 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=61.0
Q ss_pred CCCEEEEcC---------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 66 DSRSVFVGN---------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 66 ~~~~vfVgn---------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
++.||||.| .+|++||.|..|... ++.+.+|-|||.|.+.+.|..|+ .|+|..+.|++++|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 344999999 799999999887664 34788999999999999999999 999999999999999
Q ss_pred ecCCCCCC
Q 029897 130 VKRTNVPG 137 (185)
Q Consensus 130 ~a~~~~~~ 137 (185)
+|+.....
T Consensus 86 yA~s~sdi 93 (221)
T KOG4206|consen 86 YAKSDSDI 93 (221)
T ss_pred cccCccch
Confidence 99776433
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=83.34 Aligned_cols=71 Identities=28% Similarity=0.541 Sum_probs=63.3
Q ss_pred CCCCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH--hcCCceeCCe
Q 029897 58 SLANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL--HLNESELHGR 124 (185)
Q Consensus 58 ~~~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al--~l~~~~i~gr 124 (185)
..++..+....+|||++ .+|.+||+|.+|.++.. +++|||+|.+..+|+.|. .++...|+|+
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 35666778889999999 99999999999999875 679999999999999998 5788889999
Q ss_pred EeEEEecCC
Q 029897 125 QLKVTVKRT 133 (185)
Q Consensus 125 ~i~V~~a~~ 133 (185)
+|.|.|.++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999887
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.77 E-value=1.9e-08 Score=88.03 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=59.4
Q ss_pred CCCCEEEEcC---------------------cCccCCCceeEEEEeeCC----CCCCceEEEEEEcCHHHHHHHH-hcCC
Q 029897 65 VDSRSVFVGN---------------------QHFQSCGTVNRVTIRTDK----FGQPKGYAYVEFLQSEAVQEAL-HLNE 118 (185)
Q Consensus 65 ~~~~~vfVgn---------------------~~F~~~G~i~~~~i~~~~----~~~~~g~afV~f~~~~~a~~al-~l~~ 118 (185)
...++|+|.| ++|++||.|+.|.|+.+. ++..+|++||+|.+.++|.+|| .|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 3567889988 348999999999998763 2567899999999999999999 9999
Q ss_pred ceeCCeEeEEEecCC
Q 029897 119 SELHGRQLKVTVKRT 133 (185)
Q Consensus 119 ~~i~gr~i~V~~a~~ 133 (185)
..|+|+.|.|.+...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999988643
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2e-08 Score=84.72 Aligned_cols=62 Identities=32% Similarity=0.600 Sum_probs=58.3
Q ss_pred EEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 70 VFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 70 vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
|||.| ++|+.||+|++|+|.++.+| ++|| ||+|.+++.|.+|| .|||..+.++.|.|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999 99999999999999999988 9999 99999999999999 9999999999999976644
No 63
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=5.7e-08 Score=66.82 Aligned_cols=67 Identities=24% Similarity=0.382 Sum_probs=58.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..++.|||.| ++|.+||.|.-|+|-..+ ..+|-|||.|++..+|.+|+ .|+|..+.++.|.|-.-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3467899999 999999999999985543 45899999999999999999 999999999999987654
Q ss_pred C
Q 029897 133 T 133 (185)
Q Consensus 133 ~ 133 (185)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 3
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.63 E-value=4.1e-08 Score=78.70 Aligned_cols=64 Identities=31% Similarity=0.571 Sum_probs=57.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...+.+|+|+| ..|++||.|..|+|++| |+||+|.-.++|..|+ .||+++|.|++++|+.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 34677899999 89999999999999865 9999999999999999 99999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
..+
T Consensus 148 tsr 150 (346)
T KOG0109|consen 148 TSR 150 (346)
T ss_pred ccc
Confidence 543
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=6.6e-08 Score=81.15 Aligned_cols=76 Identities=24% Similarity=0.398 Sum_probs=67.9
Q ss_pred CCCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE
Q 029897 59 LANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 125 (185)
Q Consensus 59 ~~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~ 125 (185)
....+..++..|||.+ ..|..||.|.+.++..|+ ++-+++|+||.|++..+|.+|| .||+..|+.++
T Consensus 416 ~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Kr 495 (510)
T KOG0144|consen 416 NGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKR 495 (510)
T ss_pred CccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcccc
Confidence 3444556778899998 889999999999999998 6999999999999999999999 99999999999
Q ss_pred eEEEecCCC
Q 029897 126 LKVTVKRTN 134 (185)
Q Consensus 126 i~V~~a~~~ 134 (185)
++|...+.+
T Consensus 496 lkVQlk~~~ 504 (510)
T KOG0144|consen 496 LKVQLKRDR 504 (510)
T ss_pred ceEEeeecc
Confidence 999987654
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.58 E-value=7.2e-08 Score=85.84 Aligned_cols=65 Identities=22% Similarity=0.528 Sum_probs=59.5
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..++|||||+ .+|+.||.|.+|.|+. +++||||.+....+|.+|| +|+...+..+.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4478999998 8999999999998866 5899999999999999999 999999999999999996
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 54
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=71.25 Aligned_cols=59 Identities=34% Similarity=0.494 Sum_probs=51.8
Q ss_pred cCccCC-CceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 75 QHFQSC-GTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 75 ~~F~~~-G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
.+|.+| |.|..+++-+++ +|.++|||||+|.+.+.|+.|- .||++-|.++.|.|..--+
T Consensus 68 ~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 68 NYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred hhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 667777 788888888887 7999999999999999999999 9999999999999876533
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=4.8e-08 Score=86.15 Aligned_cols=68 Identities=24% Similarity=0.509 Sum_probs=62.4
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..+|+|.| .+|..||+|.+|+|+.-.. +..+|||||+|.++.+|.+|+ .|..+.|.||.|.+.||+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 56899999 9999999999999998743 778999999999999999999 9999999999999999965
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 3
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.53 E-value=6.8e-08 Score=79.42 Aligned_cols=69 Identities=25% Similarity=0.522 Sum_probs=63.3
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
+.++|||++ .+|.+||+|..|.++.|+. ++++||+||+|.+.+.+.++|....+.|.|+.|.+..|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 678999999 8999999999999999995 9999999999999999999998888899999999988865
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 85 r 85 (311)
T KOG4205|consen 85 R 85 (311)
T ss_pred c
Confidence 4
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.2e-07 Score=78.54 Aligned_cols=64 Identities=30% Similarity=0.569 Sum_probs=58.5
Q ss_pred EEEEcC--------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 69 SVFVGN--------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 69 ~vfVgn--------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
.||||- ++|+.+|+|++++|++|. + +.|||||.|.++.+|.+|| +||...|.|++|+|.|+...
T Consensus 3 sl~vg~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 3 SLYVGPDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred ceecCCcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 466664 899999999999999999 6 9999999999999999999 99999999999999998543
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.4e-07 Score=75.02 Aligned_cols=70 Identities=31% Similarity=0.474 Sum_probs=61.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee-C--CeEeEEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-H--GRQLKVT 129 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i-~--gr~i~V~ 129 (185)
.+.++||||- .+|..||.|.+|.+.+..+|.+||++||.|.+.-+|+.|| .|++..- - .-.|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 3678999996 8999999999999999999999999999999999999999 9998753 2 3668899
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
++.+.
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 99765
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=3.1e-07 Score=81.13 Aligned_cols=64 Identities=33% Similarity=0.535 Sum_probs=57.4
Q ss_pred EEEEcC-----------cCccCCCceeEEEEeeCCCC----CCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 69 SVFVGN-----------QHFQSCGTVNRVTIRTDKFG----QPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 69 ~vfVgn-----------~~F~~~G~i~~~~i~~~~~~----~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
+|||.| .+|...|.|.+|.|.+.++. .+.|||||+|.+.++|..|+ .|+|+.|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999 88899999999999887643 24599999999999999999 999999999999999886
No 73
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.44 E-value=6e-07 Score=73.55 Aligned_cols=72 Identities=31% Similarity=0.526 Sum_probs=64.2
Q ss_pred CCCCCCEEEEcC-----------cCccCCCcee--------EEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVN--------RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~--------~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
....+..|||+| .+|++||-|. .|+|..+..|+.+|=|.|.|...+++.-|| .|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345677899999 8899999874 488988888999999999999999999999 99999999
Q ss_pred CeEeEEEecCCC
Q 029897 123 GRQLKVTVKRTN 134 (185)
Q Consensus 123 gr~i~V~~a~~~ 134 (185)
|+.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999988654
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.42 E-value=4.8e-07 Score=74.48 Aligned_cols=69 Identities=25% Similarity=0.518 Sum_probs=63.8
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
..++|||++ .+|.+||.|..+.++.|.. .+++||+||+|.+++++.+++...-+.|+++.+.|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 466999999 8999999999999999985 9999999999999999999998888999999999999976
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 176 k 176 (311)
T KOG4205|consen 176 K 176 (311)
T ss_pred h
Confidence 5
No 75
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.42 E-value=1.9e-07 Score=70.33 Aligned_cols=69 Identities=28% Similarity=0.468 Sum_probs=61.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEE-EEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRV-TIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~-~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
..+.+|||+| ..|+.||.|... +|+++.. +.++||+||.|.+.+.+.+|| .+|+..+..++|.|..
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 3457899999 889999988653 7788874 999999999999999999999 9999999999999999
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+..
T Consensus 174 a~k 176 (203)
T KOG0131|consen 174 AFK 176 (203)
T ss_pred EEe
Confidence 854
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=2.8e-07 Score=76.12 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=61.6
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
-.+|||.. ..|+.||+|++|.|.++.+ +..+||+||+|.+..+...|| .||-+.|+|+-|+|-.+-+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 35677776 8899999999999999997 889999999999999999999 9999999999999987755
Q ss_pred CC
Q 029897 134 NV 135 (185)
Q Consensus 134 ~~ 135 (185)
.+
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 43
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.35 E-value=3e-06 Score=75.18 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=64.7
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC----CCCceEEEEEEcCHHHHHHHH-hcCCceeCCe
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF----GQPKGYAYVEFLQSEAVQEAL-HLNESELHGR 124 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~----~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr 124 (185)
+..+...+.|||+| ..|..||+|.+|+|+..++ ...+.|+||.|.+..+|++|+ .|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 33456788999999 7889999999999998762 567889999999999999999 9999999999
Q ss_pred EeEEEecCCC
Q 029897 125 QLKVTVKRTN 134 (185)
Q Consensus 125 ~i~V~~a~~~ 134 (185)
.|++-|.++.
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999998653
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=2e-06 Score=67.10 Aligned_cols=60 Identities=27% Similarity=0.582 Sum_probs=53.5
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
..|||++ .||..||+|..|.+ ..||+||+|.+..+|..|+ .||+.+|.+-.+.|.+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689998 89999999999877 4689999999999999999 99999999877888888754
No 79
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.13 E-value=6.5e-07 Score=69.33 Aligned_cols=67 Identities=28% Similarity=0.345 Sum_probs=59.9
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..+||||+| ++|-+-|.|.+|.|+.+++++.+ ||||.|.++-.+.-|+ -+||..|.+++|.|++-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 457999999 88889999999999999988888 9999999999999999 7899999999999876533
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.03 E-value=2.4e-06 Score=67.49 Aligned_cols=67 Identities=24% Similarity=0.492 Sum_probs=58.7
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
+.+..+||+|. ..|.+|-.....++++|+ +++++||+||.|.+..++..|+ +|+|.-++.|+|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34567899885 788888888888999998 7999999999999999999999 9999999999998753
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.99 E-value=1.5e-05 Score=63.50 Aligned_cols=69 Identities=29% Similarity=0.475 Sum_probs=62.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
....+|+|.| ++|..||.+..+-|..++.|.+.|.|-|.|...++|..|+ .+++..|+|++|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3446899999 9999999999999999999999999999999999999999 999999999999987764
Q ss_pred C
Q 029897 133 T 133 (185)
Q Consensus 133 ~ 133 (185)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.97 E-value=7.7e-05 Score=58.20 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=55.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeC-CC-CCCceEEEEEEcCHHHHHHHH-hcCCceeC---CeEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTD-KF-GQPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQL 126 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~-~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~---gr~i 126 (185)
...-+||||.+ .+|..|---+.+.|-.. +. .-.+-+|||+|.+...|.+|+ .|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34578999999 67777755555544332 22 234679999999999999999 99999997 7899
Q ss_pred EEEecCCCC
Q 029897 127 KVTVKRTNV 135 (185)
Q Consensus 127 ~V~~a~~~~ 135 (185)
+|++|+.+.
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999998763
No 83
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.96 E-value=2.1e-06 Score=74.07 Aligned_cols=71 Identities=35% Similarity=0.503 Sum_probs=62.5
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
...+.+.+|||+-- +||+.+|.|..|+||.|+ ++.++|.+||+|.+.+.+..||.|.|..+.|.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 33445667777764 999999999999999999 499999999999999999999999999999999999
Q ss_pred Eec
Q 029897 129 TVK 131 (185)
Q Consensus 129 ~~a 131 (185)
...
T Consensus 253 q~s 255 (549)
T KOG0147|consen 253 QLS 255 (549)
T ss_pred ccc
Confidence 754
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.88 E-value=2e-05 Score=66.68 Aligned_cols=66 Identities=30% Similarity=0.474 Sum_probs=57.1
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.......|+|||.| +-|..||.|..+.|+.. |+++| .|.|.++++|+.|+ .|++..|+||.|+|
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 33456789999999 77889999999988433 77777 89999999999999 89999999999999
Q ss_pred Ee
Q 029897 129 TV 130 (185)
Q Consensus 129 ~~ 130 (185)
.+
T Consensus 606 ~y 607 (608)
T KOG4212|consen 606 TY 607 (608)
T ss_pred ee
Confidence 86
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.71 E-value=0.00012 Score=60.61 Aligned_cols=71 Identities=30% Similarity=0.579 Sum_probs=61.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCcee--------EEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVN--------RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~--------~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
....-+|||-+ ++|.+||.|. .|.|-+|+ ++++||-|.|+|.+...|+.|| -+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 55667888887 8888998773 46777787 5999999999999999999999 89999999
Q ss_pred CeEeEEEecCCC
Q 029897 123 GRQLKVTVKRTN 134 (185)
Q Consensus 123 gr~i~V~~a~~~ 134 (185)
+.+|+|.+|...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999988544
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.68 E-value=0.00031 Score=57.93 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=45.5
Q ss_pred cCccCCCceeEEEEeeCC-C-CCCce--EEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDK-F-GQPKG--YAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~-~-~~~~g--~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
++|.+||.|..|.|-+.- . ..-.+ -.||+|.+.++|..|| +++|..++||.|+..+-
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYG 200 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYG 200 (480)
T ss_pred hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecC
Confidence 899999999888765432 1 22222 2499999999999999 99999999999998754
No 87
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00024 Score=61.93 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=49.7
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEE
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVT 129 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~ 129 (185)
.+|+++|+|+.+.++.+..|..+||.|++|.+..+|..|+ .|||+.|+ .+++.|.
T Consensus 83 kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 83 KVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 8999999999999998887779999999999999999999 99999986 5666664
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=3.6e-05 Score=66.71 Aligned_cols=63 Identities=24% Similarity=0.517 Sum_probs=55.2
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.+.+...++|+|-| .+|+.||+|..|+.-.. .+|.+||+|-|..+|+.|| +|++.+|.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33467788999999 99999999998766544 5899999999999999999 9999999999887
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.45 E-value=0.00032 Score=59.07 Aligned_cols=64 Identities=31% Similarity=0.489 Sum_probs=57.6
Q ss_pred CCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
+..|.|.| -+|+-||.|..|+|..++ +--|.|.|.+...|.-|+ .|+|..|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 57888888 788999999999999875 568999999999999999 9999999999999998865
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 3
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.31 E-value=0.0042 Score=52.01 Aligned_cols=56 Identities=29% Similarity=0.303 Sum_probs=47.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-C-eEeEEEecCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-G-RQLKVTVKRTN 134 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-g-r~i~V~~a~~~ 134 (185)
.+....|+|..|.|++. +---|.|+|++.+.|++|. .|||..|. | .+|+|++|++.
T Consensus 141 ~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 141 TICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred hhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 56667899999988764 3346999999999999999 99999985 3 88999999875
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00013 Score=63.49 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=61.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....+|||++ ++...||.+....++.+.. |.++||||.+|.+......|+ .|||..+.++.|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4467899997 7888899999999999985 999999999999999999999 99999999999999887
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 44
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.24 E-value=0.00061 Score=45.31 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=35.2
Q ss_pred cCccCCC-ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 75 QHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 75 ~~F~~~G-~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
+++..|| .|..| ..+-|+|.|.+.+.|.+|+ .|++..+-|.+|.|.+..
T Consensus 25 qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 25 QLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred HHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 6777786 55544 3578999999999999999 999999999999999873
No 93
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.12 E-value=0.0035 Score=51.89 Aligned_cols=67 Identities=22% Similarity=0.422 Sum_probs=55.8
Q ss_pred CCCCCEEEEcC----------------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCce
Q 029897 64 EVDSRSVFVGN----------------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE 120 (185)
Q Consensus 64 ~~~~~~vfVgn----------------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~ 120 (185)
....++|.+.| +-.++||.|.+|.|.- ..+.|.+-|.|.+.+.|..|| .|+|.-
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 35667898988 4456899999987753 347899999999999999999 999999
Q ss_pred eCCeEeEEEecCC
Q 029897 121 LHGRQLKVTVKRT 133 (185)
Q Consensus 121 i~gr~i~V~~a~~ 133 (185)
|.||.|.......
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999998876643
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.01 E-value=0.00065 Score=55.62 Aligned_cols=69 Identities=33% Similarity=0.616 Sum_probs=57.8
Q ss_pred CCCEEE-EcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 66 DSRSVF-VGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vf-Vgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
...++| |++ .+|..+|.|..++++.+. ++..+||+||.|........++..+...+.++++.|....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345566 777 388899999999999988 4999999999999999999998337888999999998776
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 53
No 95
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.92 E-value=0.0049 Score=42.36 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=45.7
Q ss_pred CCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeC----CeEeEEEecCCC
Q 029897 80 CGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH----GRQLKVTVKRTN 134 (185)
Q Consensus 80 ~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~----gr~i~V~~a~~~ 134 (185)
.|....+.|+.|- +.-+.|||||.|.+.+.|..-. .++|..+. .+.+.|.+|+-+
T Consensus 27 ~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 27 KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 3677888999997 5889999999999999999988 89999875 466778887643
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.00077 Score=52.74 Aligned_cols=59 Identities=32% Similarity=0.571 Sum_probs=49.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...+.|+|.| .+|..+|++....+ ..+++||.|.+.+++..|| .|++..|.++.|.+..
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 4456677777 88999999854444 4789999999999999999 9999999999999943
No 97
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.75 E-value=0.004 Score=45.77 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=43.5
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~~ 134 (185)
+.|..||.+.-++++-+ --.|+|.+-..|.+||.++|..|.|+.|+|....+.
T Consensus 55 ~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 55 QKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 78889999988888654 578999999999999999999999999999876543
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.68 E-value=0.0049 Score=53.86 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=50.1
Q ss_pred cCccCCCceeEEEEeeC-CC---CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTD-KF---GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~-~~---~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.-+++||.|..|.|+.+ .+ ....|-.||+|.+.+++++|+ +|+|..|.+|.|...+-
T Consensus 428 ~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 428 TECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 66779999999999988 32 456889999999999999999 99999999999887765
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.65 E-value=0.0028 Score=38.57 Aligned_cols=35 Identities=20% Similarity=0.522 Sum_probs=30.7
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL 114 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al 114 (185)
.+|..||+|..+.+.. ...+.+|.|.+..+|++||
T Consensus 19 ~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 19 EHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 7899999999998862 3669999999999999986
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.55 E-value=0.0077 Score=41.63 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=41.0
Q ss_pred cCccCCCceeEEE-EeeC-------CCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeE-eEEEecC
Q 029897 75 QHFQSCGTVNRVT-IRTD-------KFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQ-LKVTVKR 132 (185)
Q Consensus 75 ~~F~~~G~i~~~~-i~~~-------~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~-i~V~~a~ 132 (185)
.+|++||.|.+.. +..+ +.-.....-.|.|.++.+|.+||..||..|.|.. |-|.+.+
T Consensus 24 ~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 24 RHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred HHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence 8999999998764 1111 0012466889999999999999999999998854 4466653
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.35 E-value=0.019 Score=48.22 Aligned_cols=66 Identities=35% Similarity=0.433 Sum_probs=56.9
Q ss_pred CCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+++.+.|-+ .+|-.||.|+.|++++.+ .|-|.|++.+..++++|| .||+..+-|.+|.|..+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4566777766 667789999999999875 689999999999999999 99999999999999887
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+..
T Consensus 361 kQ~ 363 (494)
T KOG1456|consen 361 KQN 363 (494)
T ss_pred ccc
Confidence 653
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.29 E-value=0.01 Score=46.35 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=55.2
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~~ 130 (185)
...+..+|+.| .+|.+|.....|+++... ++.|||+|.+...+..|. .|++..|- ...|.|..
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 45678899999 889999888888887763 789999999999999999 89999886 77888877
Q ss_pred cC
Q 029897 131 KR 132 (185)
Q Consensus 131 a~ 132 (185)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 103
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.16 E-value=0.025 Score=47.13 Aligned_cols=64 Identities=28% Similarity=0.479 Sum_probs=49.7
Q ss_pred CCCEEEEcC-----------cCccCCC--ceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 66 DSRSVFVGN-----------QHFQSCG--TVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G--~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
....+|||| +.+...| .|.++++..+++ |.+||||+|...+..++++.+ .|-.++|.|+.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 345689999 2333333 566777888885 999999999999999988888 888999999776654
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.13 E-value=0.013 Score=50.59 Aligned_cols=58 Identities=31% Similarity=0.583 Sum_probs=48.6
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~~ 134 (185)
.||+.|+ |..+.+++ .+|++.|-|||+|.+++++++||+.+...+..|-|.|-.+...
T Consensus 29 ~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 29 DFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred HHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 8888886 77754433 2599999999999999999999999999999999999877443
No 105
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.66 E-value=0.0034 Score=49.96 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=46.9
Q ss_pred CCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 79 SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 79 ~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
+||+|+.+.|..+..-.-.|=++|.|...++|++|+ .||+--|.|++|...+.
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 899999987776655567899999999999999999 99999999999988755
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.03 Score=48.68 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=51.5
Q ss_pred CCCCCEEEEcC-----------cCcc-CCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHh-----cCCceeCCeE
Q 029897 64 EVDSRSVFVGN-----------QHFQ-SCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALH-----LNESELHGRQ 125 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~-~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~-----l~~~~i~gr~ 125 (185)
-.+.+|||||+ .+|. -||.|..+-|-+|.. .-++|-|-|+|.+..+..+||. |+..+|. ++
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KR 445 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KR 445 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-ee
Confidence 35689999999 6666 699999999999965 8899999999999999999992 4444443 34
Q ss_pred eEEE
Q 029897 126 LKVT 129 (185)
Q Consensus 126 i~V~ 129 (185)
|.|+
T Consensus 446 VEIk 449 (520)
T KOG0129|consen 446 VEIK 449 (520)
T ss_pred eeec
Confidence 5554
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.26 E-value=0.02 Score=49.53 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=46.8
Q ss_pred cCccCCCceeE-EEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~-~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
+||+..--|.. |.|+++..+++.|-|||.|++.+.|++||.-|...|..|-|.|..+
T Consensus 122 ~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 122 EFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 78876543333 5677777788999999999999999999988888899999999755
No 108
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.04 E-value=0.17 Score=45.98 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=29.0
Q ss_pred ceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 97 KGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 97 ~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..|.||+... ..+...+ .|++..+.|++|.|..++.
T Consensus 526 ~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 526 ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 4589999865 4566677 8999999999999998753
No 109
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.00 E-value=0.032 Score=38.89 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=29.7
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC-----CceeCCeEeEEE
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN-----ESELHGRQLKVT 129 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~-----~~~i~gr~i~V~ 129 (185)
.+|++||.|..|.+... ---|||-|.+.+.|+.|+ .+. +..|.+..+.+.
T Consensus 20 ~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 20 EAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp HHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred HHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 88999999999988654 348999999999999998 543 335566555554
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.86 E-value=0.029 Score=47.84 Aligned_cols=56 Identities=30% Similarity=0.447 Sum_probs=45.6
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeC---C-C--CC--------CceEEEEEEcCHHHHHHHHh
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTD---K-F--GQ--------PKGYAYVEFLQSEAVQEALH 115 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~---~-~--~~--------~~g~afV~f~~~~~a~~al~ 115 (185)
...+..+++|.+-| .+|+.+|.|..|+|+.. . + +. .+-+|||+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 33446899999999 99999999999999876 2 1 22 36789999999999999994
Q ss_pred c
Q 029897 116 L 116 (185)
Q Consensus 116 l 116 (185)
|
T Consensus 305 ~ 305 (484)
T KOG1855|consen 305 L 305 (484)
T ss_pred h
Confidence 3
No 111
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.84 E-value=0.066 Score=43.69 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=45.8
Q ss_pred cCccCCCceeEEEEeeCCC--CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDKF--GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~--~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++||.|..|.|..+.+ -.-----||+|...+.|.+|+ .|||.-|+||.+...+-
T Consensus 305 eEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 305 EECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 5567899999988877653 222334799999999999999 99999999999876654
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.73 E-value=0.04 Score=46.79 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=48.3
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceE-EEEEEcCHHHHHHHH-hcCCceeC-C-eEeEEEecC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELH-G-RQLKVTVKR 132 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~-afV~f~~~~~a~~al-~l~~~~i~-g-r~i~V~~a~ 132 (185)
-.++|+| .+|++||.|.+|.-.. ++.+| |.|.|.+...|..|. .|+|..|. | +.|+|++++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 3567777 9999999998774433 23444 889999999999999 99999985 3 778888775
Q ss_pred C
Q 029897 133 T 133 (185)
Q Consensus 133 ~ 133 (185)
-
T Consensus 227 l 227 (492)
T KOG1190|consen 227 L 227 (492)
T ss_pred c
Confidence 4
No 113
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.70 E-value=0.023 Score=46.92 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=47.6
Q ss_pred cCccCCCceeEEEEeeCC----CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 75 QHFQSCGTVNRVTIRTDK----FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~----~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..|.+||.|.+|.+-.+. .--...-++|+|...++|..|| ..++..++|+.|+..+..+
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 899999999999887765 1122344999999999999999 9999999999877665543
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.43 E-value=0.18 Score=45.67 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=47.0
Q ss_pred cCccCCCcee-EEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 75 QHFQSCGTVN-RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 75 ~~F~~~G~i~-~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
+||..|-.+- +|.|-.+..|+..|-|.|-|++.++|..|. .|++..|..|.|.|..
T Consensus 886 ~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 886 EFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred HHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 8999986553 455545556999999999999999999999 9999999999988764
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.43 E-value=0.023 Score=52.11 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=57.5
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..+|||.| .+|..+|.+++++++..+.|+++|.+||.|.++.++..++ .++...+.-+.+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 34577777 7888999999999999999999999999999999999999 8888888877777776544
No 116
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.52 E-value=0.063 Score=46.35 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=47.5
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
.+|.+||.|..|.|-.. ---|.|+|.+..+|-.|-...+..|++|.|+|.|-++
T Consensus 392 ~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 392 PHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhcCccccccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 89999999999988443 4578999999999988888999999999999999876
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.37 E-value=0.094 Score=48.57 Aligned_cols=67 Identities=22% Similarity=0.453 Sum_probs=56.4
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCC--eEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g--r~i~V 128 (185)
.....+.+||++ ..|..||.|..|.+- +.--|++|.|.+...++.|+ .|-+..|++ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-----cCCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 445677899998 899999999987772 34569999999999999999 899999985 77999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++.+.
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 988654
No 118
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=92.09 E-value=0.074 Score=41.87 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=37.8
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL 121 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i 121 (185)
.||||-| .+|+.|--...++|. ....-..||++|.+.+.|..|+ .|.|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~---~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIR---ARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe---cCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4799998 777777544444442 2223568999999999999999 8988765
No 119
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.36 E-value=0.27 Score=40.30 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=42.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeE-eEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQ-LKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~-i~V~~a 131 (185)
.+|++||.|++.... .+-.+-+|-|.+..+|++||..||+.|+|-. |-|+.+
T Consensus 215 ~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 215 NLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred HHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 899999999876543 2456889999999999999999999998754 456654
No 120
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=90.84 E-value=0.097 Score=41.87 Aligned_cols=60 Identities=22% Similarity=0.436 Sum_probs=46.0
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-C--------CCCce----EEEEEEcCHHHHHHHH-hcCCce
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-F--------GQPKG----YAYVEFLQSEAVQEAL-HLNESE 120 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~--------~~~~g----~afV~f~~~~~a~~al-~l~~~~ 120 (185)
..-.||+++ ++|+.||.|-.|.|-... + +.+.. -|.|+|.+...|..+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 345799999 899999999888876543 2 22222 3568999999999877 899999
Q ss_pred eCCeE
Q 029897 121 LHGRQ 125 (185)
Q Consensus 121 i~gr~ 125 (185)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 121
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.68 E-value=0.62 Score=30.07 Aligned_cols=42 Identities=24% Similarity=0.546 Sum_probs=24.3
Q ss_pred ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 82 TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 82 ~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.|-.|+|. ..|+||+-.. +.+..++ .|++..+.|++|+|+.|
T Consensus 32 ~IG~I~I~-------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIF-------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE--------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEe-------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45567774 3499999876 4777788 99999999999999875
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.59 E-value=0.12 Score=45.84 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCCCCCEEEEcC-----------cCcc-CCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee---CCeEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQ-SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL---HGRQL 126 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~-~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i---~gr~i 126 (185)
....+..|+|.| .++. .+|.|+..+| .+-+..|||.|.+.++|.+.. +||+..+ +.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345677899999 4454 5566666533 235778999999999999999 9999886 56778
Q ss_pred EEEecC
Q 029897 127 KVTVKR 132 (185)
Q Consensus 127 ~V~~a~ 132 (185)
.|.+..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 887663
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.72 E-value=0.26 Score=39.49 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=51.2
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC--C--ceeCCeEeEEEec
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--E--SELHGRQLKVTVK 131 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~--~--~~i~gr~i~V~~a 131 (185)
..|||.| ..|+.||.|....++.|..++..+-++|.|...-.+.+|+ .+. + .++.+++.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6788888 8899999999988888877899999999999999999999 442 2 2345666666544
No 124
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.25 E-value=0.74 Score=33.89 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=40.6
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
..++.||+|.+|.++- +--|.|.|.+..+|-+|+ ++.. ..-|..+.+.|.
T Consensus 109 ~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 109 QRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 6678899999998853 568999999999999999 7765 456777787775
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.03 E-value=0.34 Score=41.10 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=46.7
Q ss_pred cCccCCCceeEEEEeeCC---C-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDK---F-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~---~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
.+|.-.|.|..+.|+... . ....-.|||.|.+...+..|..|.++.|-++.|.|-..
T Consensus 26 tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 26 TLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred HHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 678889999999887643 2 44577999999999999999999888888888777554
No 126
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.35 E-value=0.27 Score=44.22 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=48.0
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.....+..+|||+| .+...||-|.++..+. |+|++|........|+ .+....+++..+.+
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 33345677999999 5566788887775533 9999999999999999 78888888887765
Q ss_pred Ee
Q 029897 129 TV 130 (185)
Q Consensus 129 ~~ 130 (185)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 43
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=88.26 E-value=1.3 Score=38.86 Aligned_cols=51 Identities=35% Similarity=0.530 Sum_probs=38.8
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC---C-CCCce---EEEEEEcCHHHHHHHH
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK---F-GQPKG---YAYVEFLQSEAVQEAL 114 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~---~-~~~~g---~afV~f~~~~~a~~al 114 (185)
...-+++||||+ ..|..||.+. |..+... . -.++| |+|+.|.++..+...|
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 345578999999 8899999875 5555321 1 34677 9999999999988877
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.18 E-value=0.039 Score=50.69 Aligned_cols=57 Identities=35% Similarity=0.536 Sum_probs=43.9
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHG 123 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~g 123 (185)
..++||.| ..|..+|.|..+.|....+ +..+|+|||+|...+.+.+||.++...+-|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 45688888 6777888887777764443 889999999999999999999555444444
No 129
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.83 E-value=1.4 Score=33.84 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=37.9
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC--CceeCCeEeEEEecCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVTVKRT 133 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~--~~~i~gr~i~V~~a~~ 133 (185)
.+|..++.+..+.+.. +.+=..|.|.+.+.|..|. .|+ +..|.|..|+|-++..
T Consensus 14 ~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 14 ELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 6788888777665554 3556789999999999999 888 8999999999988744
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=84.81 E-value=0.72 Score=39.18 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=47.2
Q ss_pred cCccCCC-ceeE--EEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 75 QHFQSCG-TVNR--VTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 75 ~~F~~~G-~i~~--~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
.||..|- .|.. |.++.+..|++.|-|||+|.+.+.|..|. ..+.+..+.|-|.|..+..
T Consensus 299 ~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 299 DFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred HHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 6666664 3333 78888888999999999999999999998 7777767789999876643
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=82.39 E-value=0.21 Score=46.32 Aligned_cols=66 Identities=23% Similarity=0.434 Sum_probs=52.6
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
+...++|||+|| ..|..+|.|..|.|-+.+-+.-.-|+||.|.+...+..|+ .+.+..|..-.+++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 346789999999 8899999999998866544556779999999999999999 88887775434443
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=81.56 E-value=0.93 Score=41.33 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCCEEEEcC-----------cCccCCCceeE-EEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~-~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.+..|||.. .+|..--.|++ |.|-...+++.++-|||.|..+.++..|+ .-+.+-++.|.|+|..
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 356789987 77776666666 67766667889999999999988888887 5555667778888863
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.24 E-value=0.79 Score=42.57 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=48.4
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee--CCeEeEEEecCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL--HGRQLKVTVKRTN 134 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i--~gr~i~V~~a~~~ 134 (185)
.+|++||.|.+++..++ ...|.|+|.+.+.|-.|+ +|+|+++ -|-+.+|.+|+.-
T Consensus 317 ~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 317 TLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred HHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 78899999999988776 568999999999999999 9999986 4888999999774
No 134
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=78.45 E-value=4.4 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=29.5
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN 117 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~ 117 (185)
++|+.||.|. |..+.| --|||.....+.|..++ .+.
T Consensus 27 qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 27 QLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred HHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 8999999987 555554 47999999999999988 554
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=78.42 E-value=0.92 Score=38.56 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=41.7
Q ss_pred cCccC----CCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEE
Q 029897 75 QHFQS----CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 129 (185)
Q Consensus 75 ~~F~~----~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~ 129 (185)
.||.. -|..+.|-+++..+|+..|-|||.|..++.|..||.-|...|+-|-|.+.
T Consensus 180 ~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 180 EFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred HhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67752 13456677777668999999999999999999999666666666666553
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=76.80 E-value=4.7 Score=25.26 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=31.7
Q ss_pred CEEEEcC----------cCccCC---CceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hc
Q 029897 68 RSVFVGN----------QHFQSC---GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL 116 (185)
Q Consensus 68 ~~vfVgn----------~~F~~~---G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l 116 (185)
.+|+|.| .+|..| .....|..+-|. -|-|.|.+...|.+|| .|
T Consensus 6 eavhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 3677777 566666 234568888774 5779999999999998 54
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=75.75 E-value=2.6 Score=34.60 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCc-eeCCeEeEEEec
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNES-ELHGRQLKVTVK 131 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~-~i~gr~i~V~~a 131 (185)
..+++||++ .+|..+|.+..+.+.... ...+++++.+.|...+.+..||.+.+. .+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 467889988 667778877777666655 488999999999999999999966664 556665554444
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.63 E-value=5.7 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.396 Sum_probs=25.3
Q ss_pred ceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 97 KGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 97 ~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.|| ||.|.+..+|++|. ..++..+....|.+
T Consensus 34 tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 34 TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 454 89999999999999 88998887766654
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.74 E-value=13 Score=26.04 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=34.0
Q ss_pred ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCC
Q 029897 82 TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG 123 (185)
Q Consensus 82 ~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g 123 (185)
.|..++|+++.. .++-.+.+.|.+...|..-. .+||+.++.
T Consensus 40 ~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 677888888742 36778999999999999988 999998864
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=65.50 E-value=13 Score=33.14 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=41.0
Q ss_pred CCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCcee---CC-eEeEEEecCCC
Q 029897 80 CGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESEL---HG-RQLKVTVKRTN 134 (185)
Q Consensus 80 ~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i---~g-r~i~V~~a~~~ 134 (185)
.|.-..+.|+.|= +..+.|||||.|.+.+++..+. +.||+.+ .+ +.+.|.+|+-+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 4555667777775 4667999999999999999999 8999874 33 44556666443
No 141
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=62.23 E-value=17 Score=29.18 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=9.9
Q ss_pred cChhhHHHHHHHHHHHHHHH
Q 029897 13 NKQVELDDMKIRLKEMEEEA 32 (185)
Q Consensus 13 ~~~~e~~~~~~~~~~~e~~~ 32 (185)
+++++.+++-+.|..+..+.
T Consensus 143 ddeDd~~~Ll~ELekIKkER 162 (244)
T PF04889_consen 143 DDEDDTAALLRELEKIKKER 162 (244)
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 34444555555555444443
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=57.17 E-value=3.4 Score=32.67 Aligned_cols=47 Identities=30% Similarity=0.447 Sum_probs=39.8
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL 121 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i 121 (185)
..|+.-|.|..+++.++.+++++.++|+++......-.++ ...+..+
T Consensus 103 ~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 103 EVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred eeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 7788889999999999988999999999999888888888 5555543
No 143
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.86 E-value=60 Score=28.12 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=29.4
Q ss_pred cCccCCCc-eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCcee
Q 029897 75 QHFQSCGT-VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESEL 121 (185)
Q Consensus 75 ~~F~~~G~-i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i 121 (185)
..|..|+. --.|+++-|. .+|-.|.+...|..||.|....+
T Consensus 410 ~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 410 KAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred HHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhccCceE
Confidence 67777753 2456666653 79999999999999997743333
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=55.30 E-value=7.5 Score=33.67 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=32.1
Q ss_pred CceEEEEEEcCHHHHHHHH-hcCCce-eCCeEeEEEecCC
Q 029897 96 PKGYAYVEFLQSEAVQEAL-HLNESE-LHGRQLKVTVKRT 133 (185)
Q Consensus 96 ~~g~afV~f~~~~~a~~al-~l~~~~-i~gr~i~V~~a~~ 133 (185)
..||+||.+.+..-|.+|+ .++++. +.|+++.|...-+
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999 888864 7899988876533
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=52.70 E-value=5.9 Score=33.90 Aligned_cols=71 Identities=25% Similarity=0.226 Sum_probs=45.3
Q ss_pred CCCCcCCCCCCEEEEcC---------cCccCCCceeEEEEeeCC--CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEe
Q 029897 58 SLANREEVDSRSVFVGN---------QHFQSCGTVNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 126 (185)
Q Consensus 58 ~~~~~~~~~~~~vfVgn---------~~F~~~G~i~~~~i~~~~--~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i 126 (185)
......+...+++||++ +++.-+-.|-.+.|+..- .-.+--|||+.|.+...+..+|..+|..+...+|
T Consensus 43 ~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~l 122 (479)
T KOG4676|consen 43 VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPL 122 (479)
T ss_pred CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCcc
Confidence 33344556789999998 444443334333333221 2445567999999988888888778877766666
Q ss_pred EE
Q 029897 127 KV 128 (185)
Q Consensus 127 ~V 128 (185)
.+
T Consensus 123 t~ 124 (479)
T KOG4676|consen 123 TK 124 (479)
T ss_pred cc
Confidence 43
No 146
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.30 E-value=6.2 Score=30.20 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=41.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCe-EeEEEecCCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR-QLKVTVKRTNV 135 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr-~i~V~~a~~~~ 135 (185)
.+|.+|-+.....+++ +.++.-|.|.+.+.|..|. .++...|.|. .++.-++.+..
T Consensus 34 ~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 34 NLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred hHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 5666655554444433 3566778999999999999 9999999987 78877776653
No 147
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=51.98 E-value=1e+02 Score=23.88 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=41.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
.....|.|.+ .+..+-|.|....+.+| |++.|+|...++.+-|| .|+...+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4456788887 56667788888888776 59999999999999999 88887764
No 148
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=48.06 E-value=1.5e+02 Score=28.75 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.1
Q ss_pred CceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 96 PKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 96 ~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
-+||-||+=.....+..|| .|-+..+.
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 5899999999999999999 77766555
No 149
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=42.13 E-value=9.5 Score=19.99 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=1.5
Q ss_pred CCCCCCCC
Q 029897 177 MPMRYSPY 184 (185)
Q Consensus 177 ~~~~~~py 184 (185)
+++||.||
T Consensus 17 gg~rfEPY 24 (30)
T PF11532_consen 17 GGNRFEPY 24 (30)
T ss_dssp ------SS
T ss_pred CCcccccc
Confidence 34567777
No 150
>KOG3228 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.66 E-value=67 Score=24.95 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 029897 15 QVELDDMKIRLKEMEEEAT 33 (185)
Q Consensus 15 ~~e~~~~~~~~~~~e~~~~ 33 (185)
+++.+++-..++.+..+..
T Consensus 125 eDdt~aLlaele~ikkERa 143 (226)
T KOG3228|consen 125 EDDTQALLAELENIKKERA 143 (226)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 151
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.40 E-value=39 Score=22.66 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=22.5
Q ss_pred EEEEEcCHHHHHHHHhcCC--ceeCCeEeEEEe
Q 029897 100 AYVEFLQSEAVQEALHLNE--SELHGRQLKVTV 130 (185)
Q Consensus 100 afV~f~~~~~a~~al~l~~--~~i~gr~i~V~~ 130 (185)
|.|+|.+..-|...+.+.. ..+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999885444 446666666643
No 152
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=40.49 E-value=51 Score=26.45 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=7.3
Q ss_pred cccccccChhhHHH
Q 029897 7 DMIETENKQVELDD 20 (185)
Q Consensus 7 d~~~~e~~~~e~~~ 20 (185)
|.++++|+++++-+
T Consensus 140 d~~ddeDd~~~Ll~ 153 (244)
T PF04889_consen 140 DDDDDEDDTAALLR 153 (244)
T ss_pred cccccchHHHHHHH
Confidence 34456666655433
No 153
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.39 E-value=70 Score=26.21 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=22.6
Q ss_pred EEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 100 AYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 100 afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
|||+|.+..+|+.|+ .+.... .+.+.|..|-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 799999999999999 443332 24457776643
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.26 E-value=54 Score=27.13 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=39.6
Q ss_pred cCccCCCceeEEEEeeCC--------CCCCceEEEEEEcCHHHHHHH----H-hcCCc--eeCCeEeEEEec
Q 029897 75 QHFQSCGTVNRVTIRTDK--------FGQPKGYAYVEFLQSEAVQEA----L-HLNES--ELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~--------~~~~~g~afV~f~~~~~a~~a----l-~l~~~--~i~gr~i~V~~a 131 (185)
..|-+||+|++|.|+.+. +.+......+.|-+.+.+..- | .|... .|....|.|.+.
T Consensus 34 ~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV 105 (309)
T PF10567_consen 34 TKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFV 105 (309)
T ss_pred HHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEE
Confidence 678899999999999875 234567788999988776543 2 33332 356666666554
No 155
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.26 E-value=1.9e+02 Score=18.78 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.9
Q ss_pred CceEEEEEEcCHHHHHHHH-hcCCce
Q 029897 96 PKGYAYVEFLQSEAVQEAL-HLNESE 120 (185)
Q Consensus 96 ~~g~afV~f~~~~~a~~al-~l~~~~ 120 (185)
.+||-||+=.+..++..|+ .+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 6999999999999999999 776543
No 156
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.65 E-value=5.4e+02 Score=22.28 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=3.7
Q ss_pred ceEEEEEE
Q 029897 97 KGYAYVEF 104 (185)
Q Consensus 97 ~g~afV~f 104 (185)
.|.|++.+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 45554433
No 157
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.01 E-value=75 Score=19.14 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.7
Q ss_pred CceEEEEEEcC
Q 029897 96 PKGYAYVEFLQ 106 (185)
Q Consensus 96 ~~g~afV~f~~ 106 (185)
++|||||...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 68999999886
Done!