Query 029897
Match_columns 185
No_of_seqs 222 out of 2325
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.1E-18 2.4E-22 124.6 10.0 73 64-136 36-121 (156)
2 3q2s_C Cleavage and polyadenyl 99.7 3.9E-19 1.3E-23 139.7 3.2 68 66-133 67-149 (229)
3 4fxv_A ELAV-like protein 1; RN 99.7 5.3E-18 1.8E-22 116.5 8.5 69 65-133 17-98 (99)
4 3pgw_S U1-70K; protein-RNA com 99.7 3.8E-17 1.3E-21 139.5 15.3 73 64-136 99-184 (437)
5 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.8E-18 3.4E-22 125.2 8.1 74 63-136 68-154 (165)
6 2fy1_A RNA-binding motif prote 99.7 6.9E-17 2.4E-21 113.9 10.4 70 65-134 5-86 (116)
7 2cq0_A Eukaryotic translation 99.7 2.4E-16 8.2E-21 108.4 12.5 74 61-134 9-95 (103)
8 3ex7_B RNA-binding protein 8A; 99.7 2.1E-17 7.2E-22 117.8 6.9 74 62-135 17-103 (126)
9 3s8s_A Histone-lysine N-methyl 99.7 7.3E-17 2.5E-21 112.9 9.5 69 65-133 4-85 (110)
10 2d9p_A Polyadenylate-binding p 99.7 2.1E-16 7.1E-21 108.7 11.4 73 62-135 10-94 (103)
11 2cqd_A RNA-binding region cont 99.7 4.5E-16 1.5E-20 109.4 12.8 75 59-134 9-96 (116)
12 2do4_A Squamous cell carcinoma 99.7 2E-16 7E-21 108.2 10.7 75 61-135 11-97 (100)
13 1x5u_A Splicing factor 3B subu 99.7 1.3E-16 4.5E-21 110.0 9.8 74 62-135 10-96 (105)
14 1u6f_A Tcubp1, RNA-binding pro 99.7 2.2E-16 7.4E-21 114.3 10.8 75 60-134 35-122 (139)
15 2dnz_A Probable RNA-binding pr 99.7 2E-16 6.7E-21 107.1 9.7 70 65-134 3-85 (95)
16 2dgo_A Cytotoxic granule-assoc 99.7 7.1E-16 2.4E-20 108.1 12.9 76 60-135 8-96 (115)
17 2do0_A HnRNP M, heterogeneous 99.7 8.4E-16 2.9E-20 107.5 13.2 72 63-134 11-94 (114)
18 2cpz_A CUG triplet repeat RNA- 99.7 2.9E-16 9.8E-21 110.2 10.7 74 61-134 19-105 (115)
19 2dgs_A DAZ-associated protein 99.7 2.8E-16 9.7E-21 107.3 10.4 71 64-134 7-89 (99)
20 2dnh_A Bruno-like 5, RNA bindi 99.7 3E-16 1E-20 108.2 10.6 73 63-135 11-98 (105)
21 2cq3_A RNA-binding protein 9; 99.7 7.1E-16 2.4E-20 106.0 12.0 74 61-135 9-94 (103)
22 2dnm_A SRP46 splicing factor; 99.7 1.6E-16 5.6E-21 109.3 8.5 72 63-134 9-93 (103)
23 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2E-16 6.9E-21 108.5 8.9 72 64-135 9-93 (102)
24 2cph_A RNA binding motif prote 99.7 4.3E-16 1.5E-20 107.7 10.1 75 61-135 9-98 (107)
25 2dng_A Eukaryotic translation 99.7 1.1E-15 3.9E-20 105.1 11.9 70 64-134 12-93 (103)
26 1whw_A Hypothetical protein ri 99.7 4.1E-16 1.4E-20 106.4 9.6 71 65-135 6-89 (99)
27 1x4h_A RNA-binding protein 28; 99.7 5.8E-16 2E-20 107.7 10.3 73 62-134 10-101 (111)
28 1wi8_A EIF-4B, eukaryotic tran 99.7 8.1E-16 2.8E-20 106.0 10.8 70 64-134 12-94 (104)
29 2cqi_A Nucleolysin TIAR; RNA r 99.7 9E-16 3.1E-20 105.5 10.7 72 62-134 10-93 (103)
30 1x4a_A Splicing factor, argini 99.7 1.4E-15 4.7E-20 105.7 11.6 73 60-134 15-99 (109)
31 2cpe_A RNA-binding protein EWS 99.7 6E-16 2E-20 108.1 9.7 74 62-135 10-104 (113)
32 1x5t_A Splicing factor 3B subu 99.7 3.1E-16 1.1E-20 106.3 8.0 70 65-134 3-86 (96)
33 2e5h_A Zinc finger CCHC-type a 99.7 7.4E-16 2.5E-20 104.1 9.8 70 63-132 12-94 (94)
34 3ucg_A Polyadenylate-binding p 99.7 4.4E-16 1.5E-20 104.1 8.5 72 66-137 5-88 (89)
35 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.9E-16 1.3E-20 103.9 7.9 69 66-134 5-86 (87)
36 1x5s_A Cold-inducible RNA-bind 99.6 3.4E-16 1.2E-20 107.4 7.8 71 64-134 9-92 (102)
37 3md1_A Nuclear and cytoplasmic 99.6 7E-16 2.4E-20 101.8 8.9 68 67-134 1-81 (83)
38 2cqc_A Arginine/serine-rich sp 99.6 6.1E-16 2.1E-20 104.6 8.7 72 62-133 10-94 (95)
39 1p27_B RNA-binding protein 8A; 99.6 3.4E-16 1.1E-20 108.1 7.4 73 63-135 19-104 (106)
40 2m2b_A RNA-binding protein 10; 99.6 3E-16 1E-20 112.8 7.4 74 61-135 17-109 (131)
41 2ywk_A Putative RNA-binding pr 99.6 3.6E-16 1.2E-20 105.8 7.3 71 63-133 12-94 (95)
42 2dhg_A TRNA selenocysteine ass 99.6 4.8E-16 1.7E-20 107.0 8.0 70 65-134 7-90 (104)
43 2khc_A Testis-specific RNP-typ 99.6 9.4E-16 3.2E-20 107.9 9.5 72 61-132 34-118 (118)
44 1x4c_A Splicing factor, argini 99.6 2.3E-15 7.9E-20 104.6 11.3 66 65-136 13-95 (108)
45 2dgp_A Bruno-like 4, RNA bindi 99.6 5.2E-16 1.8E-20 107.2 7.8 73 62-134 8-96 (106)
46 2x1f_A MRNA 3'-END-processing 99.6 7.5E-16 2.6E-20 104.7 8.3 68 67-134 2-82 (96)
47 3s7r_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 102.1 8.6 69 63-131 7-87 (87)
48 2cpi_A CCR4-NOT transcription 99.6 3.8E-15 1.3E-19 104.0 12.0 74 62-135 10-102 (111)
49 1s79_A Lupus LA protein; RRM, 99.6 2.7E-16 9.3E-21 108.8 6.0 70 64-133 8-88 (103)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5.6E-16 1.9E-20 102.7 7.2 68 65-132 5-85 (85)
51 1oo0_B CG8781-PA, drosophila Y 99.6 6.1E-16 2.1E-20 107.6 7.7 73 62-134 21-106 (110)
52 2jrs_A RNA-binding protein 39; 99.6 1.2E-15 4E-20 106.3 8.9 75 60-134 19-106 (108)
53 2cqg_A TDP-43, TAR DNA-binding 99.6 3.4E-15 1.2E-19 102.6 11.1 73 61-134 9-93 (103)
54 4f25_A Polyadenylate-binding p 99.6 7.6E-16 2.6E-20 108.3 7.9 68 67-135 5-84 (115)
55 1wez_A HnRNP H', FTP-3, hetero 99.6 1.8E-15 6.3E-20 104.3 9.6 70 64-134 12-92 (102)
56 2cpf_A RNA binding motif prote 99.6 1.2E-15 4E-20 104.0 8.5 70 65-134 3-88 (98)
57 1x4b_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 107.5 8.5 70 65-134 25-106 (116)
58 2cpy_A RNA-binding protein 12; 99.6 8.4E-16 2.9E-20 107.9 8.0 72 63-134 11-94 (114)
59 2lkz_A RNA-binding protein 5; 99.6 3.7E-16 1.3E-20 106.6 5.9 70 64-133 6-94 (95)
60 2jwn_A Embryonic polyadenylate 99.6 1.4E-15 4.6E-20 108.0 9.0 73 65-137 34-118 (124)
61 3ns6_A Eukaryotic translation 99.6 2.1E-16 7.3E-21 108.5 4.6 69 65-133 4-92 (100)
62 2lxi_A RNA-binding protein 10; 99.6 1.7E-16 5.8E-21 107.2 3.6 68 67-134 1-83 (91)
63 2dh8_A DAZ-associated protein 99.6 1.2E-15 4.2E-20 105.2 8.0 74 61-134 10-95 (105)
64 2kxn_B Transformer-2 protein h 99.6 8.8E-16 3E-20 110.3 7.5 75 61-135 40-127 (129)
65 2fc9_A NCL protein; structure 99.6 4.3E-15 1.5E-19 101.7 10.6 69 63-134 11-91 (101)
66 3ulh_A THO complex subunit 4; 99.6 1.7E-15 5.8E-20 104.7 8.6 69 64-132 26-106 (107)
67 2la6_A RNA-binding protein FUS 99.6 2E-15 6.8E-20 103.1 8.6 69 64-132 10-99 (99)
68 3p5t_L Cleavage and polyadenyl 99.6 1.8E-16 6E-21 106.7 3.0 68 68-135 2-84 (90)
69 4a8x_A RNA-binding protein wit 99.6 1.4E-15 5E-20 101.2 7.3 70 66-135 3-86 (88)
70 2div_A TRNA selenocysteine ass 99.6 1.5E-15 5.1E-20 103.6 7.3 70 65-134 7-94 (99)
71 2dgv_A HnRNP M, heterogeneous 99.6 2.4E-15 8.3E-20 101.1 8.1 69 65-134 6-86 (92)
72 2cq4_A RNA binding motif prote 99.6 8.5E-16 2.9E-20 107.6 5.9 72 63-134 21-104 (114)
73 1x5o_A RNA binding motif, sing 99.6 8.5E-15 2.9E-19 102.4 10.9 73 62-134 20-112 (114)
74 2rs2_A Musashi-1, RNA-binding 99.6 3.3E-15 1.1E-19 104.1 8.7 75 60-134 18-104 (109)
75 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.4E-15 4.6E-20 104.3 6.6 72 62-134 14-98 (100)
76 2dgu_A Heterogeneous nuclear r 99.6 7E-15 2.4E-19 101.1 10.0 64 65-135 9-84 (103)
77 2err_A Ataxin-2-binding protei 99.6 1.8E-15 6.3E-20 105.4 7.1 75 59-134 21-107 (109)
78 2fc8_A NCL protein; structure 99.6 1.2E-14 4.2E-19 99.5 11.1 71 61-134 9-92 (102)
79 2db1_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 105.3 8.7 71 63-133 13-97 (118)
80 2cqp_A RNA-binding protein 12; 99.6 2.6E-15 8.8E-20 102.2 7.4 71 64-134 12-95 (98)
81 2dgw_A Probable RNA-binding pr 99.6 7.1E-15 2.4E-19 98.7 9.4 70 64-134 7-87 (91)
82 1wg5_A Heterogeneous nuclear r 99.6 9.8E-15 3.4E-19 100.7 10.3 71 64-134 12-94 (104)
83 1x5p_A Negative elongation fac 99.6 1.4E-14 4.9E-19 98.5 11.0 67 63-134 11-87 (97)
84 2cq1_A PTB-like protein L; RRM 99.6 2.2E-14 7.6E-19 98.8 11.9 68 63-135 11-92 (101)
85 2kn4_A Immunoglobulin G-bindin 99.6 4.6E-15 1.6E-19 109.4 9.1 72 64-135 67-151 (158)
86 2dgx_A KIAA0430 protein; RRM d 99.6 4.1E-15 1.4E-19 101.2 7.9 68 65-134 7-90 (96)
87 3n9u_C Cleavage and polyadenyl 99.6 3E-15 1E-19 110.9 7.7 68 66-133 54-136 (156)
88 2lea_A Serine/arginine-rich sp 99.6 1.7E-15 5.8E-20 109.6 6.2 75 61-135 41-128 (135)
89 2dis_A Unnamed protein product 99.6 5.1E-15 1.8E-19 102.6 8.3 71 65-135 6-93 (109)
90 1x4e_A RNA binding motif, sing 99.6 1.6E-15 5.4E-20 100.6 4.9 68 65-132 3-83 (85)
91 2kt5_A RNA and export factor-b 99.6 5.9E-15 2E-19 104.8 8.2 72 63-134 31-114 (124)
92 1p1t_A Cleavage stimulation fa 99.6 9.8E-16 3.3E-20 105.4 3.7 70 65-134 6-88 (104)
93 2a3j_A U1 small nuclear ribonu 99.6 3.6E-15 1.2E-19 106.9 6.8 68 65-134 27-110 (127)
94 2hgn_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 112.5 2.8 71 63-134 42-123 (139)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.1E-14 3.8E-19 105.0 9.4 71 61-131 57-140 (140)
96 2dnn_A RNA-binding protein 12; 99.6 5.4E-15 1.8E-19 103.3 7.2 68 65-133 14-92 (109)
97 2cpj_A Non-POU domain-containi 99.6 1.6E-14 5.4E-19 98.6 9.1 68 62-134 10-89 (99)
98 2lcw_A RNA-binding protein FUS 99.3 2.4E-16 8.3E-21 110.8 0.0 71 64-134 4-95 (116)
99 2cpd_A Apobec-1 stimulating pr 99.6 3.3E-14 1.1E-18 96.9 10.6 65 63-134 11-89 (99)
100 2dnq_A RNA-binding protein 4B; 99.6 1.9E-14 6.5E-19 96.5 8.8 63 65-134 6-80 (90)
101 2mss_A Protein (musashi1); RNA 99.6 2.3E-15 8E-20 97.5 4.1 63 69-131 1-75 (75)
102 1x4d_A Matrin 3; structural ge 99.6 2.9E-14 9.8E-19 98.4 9.8 65 65-134 13-92 (102)
103 2ki2_A SS-DNA binding protein 99.6 1.9E-15 6.6E-20 101.3 3.7 66 68-134 2-80 (90)
104 2nlw_A Eukaryotic translation 99.5 7.5E-15 2.6E-19 101.5 6.5 70 64-134 12-100 (105)
105 2hgl_A HNRPF protein, heteroge 99.5 7.1E-15 2.4E-19 106.6 6.5 71 63-133 40-124 (136)
106 1x4g_A Nucleolysin TIAR; struc 99.5 1.7E-14 5.8E-19 100.2 8.2 67 64-135 22-100 (109)
107 2dgt_A RNA-binding protein 30; 99.5 3.1E-14 1.1E-18 95.8 9.3 64 64-134 7-82 (92)
108 1why_A Hypothetical protein ri 99.5 2.7E-14 9.3E-19 97.0 9.0 67 63-134 13-93 (97)
109 2ek1_A RNA-binding protein 12; 99.5 4.7E-15 1.6E-19 100.3 5.1 68 65-132 13-93 (95)
110 3beg_B Splicing factor, argini 99.5 8.7E-15 3E-19 102.9 6.7 64 65-134 14-94 (115)
111 2ytc_A PRE-mRNA-splicing facto 99.5 1.6E-14 5.6E-19 95.6 7.6 65 63-132 8-85 (85)
112 2jvo_A Nucleolar protein 3; nu 99.5 1.4E-14 4.9E-19 100.8 7.6 69 59-134 23-103 (108)
113 1sjq_A Polypyrimidine tract-bi 99.5 9.1E-15 3.1E-19 101.3 6.5 65 65-134 14-92 (105)
114 2cpx_A Hypothetical protein FL 99.5 3E-14 1E-18 99.6 8.9 68 64-134 22-105 (115)
115 1wex_A Hypothetical protein (r 99.5 4.4E-14 1.5E-18 97.8 9.2 66 64-134 12-91 (104)
116 2dnp_A RNA-binding protein 14; 99.5 3E-14 1E-18 95.5 8.1 64 64-134 6-81 (90)
117 2e5j_A Methenyltetrahydrofolat 99.5 2E-14 6.7E-19 97.8 7.3 70 62-135 14-95 (97)
118 2lmi_A GRSF-1, G-rich sequence 99.5 7.4E-15 2.5E-19 101.9 5.2 70 64-133 8-91 (107)
119 2hvz_A Splicing factor, argini 99.5 1.1E-14 3.7E-19 99.7 5.6 64 68-135 1-76 (101)
120 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5.1E-19 96.7 6.1 62 66-132 6-79 (89)
121 3r27_A HnRNP L, heterogeneous 99.5 2E-14 6.9E-19 98.7 6.9 66 64-134 18-97 (100)
122 1wel_A RNA-binding protein 12; 99.5 2.4E-14 8E-19 101.8 7.3 70 64-133 22-103 (124)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.5E-15 2.2E-19 95.7 3.9 63 68-131 1-76 (77)
124 2pe8_A Splicing factor 45; RRM 99.5 6.8E-14 2.3E-18 97.0 9.1 69 65-133 6-93 (105)
125 2la4_A Nuclear and cytoplasmic 99.5 2E-14 6.8E-19 98.4 6.1 64 65-133 25-100 (101)
126 2krb_A Eukaryotic translation 99.5 1.2E-14 4E-19 95.7 4.3 62 67-129 1-81 (81)
127 1x4f_A Matrin 3; structural ge 99.5 2.8E-13 9.5E-18 94.9 11.0 67 63-134 21-102 (112)
128 3lqv_A PRE-mRNA branch site pr 99.5 4.1E-14 1.4E-18 99.0 6.7 68 65-134 6-85 (115)
129 2xnq_A Nuclear polyadenylated 99.5 9.7E-14 3.3E-18 94.6 8.3 66 62-134 17-95 (97)
130 1nu4_A U1A RNA binding domain; 99.5 1.9E-14 6.5E-19 97.6 4.7 69 64-134 5-89 (97)
131 2ad9_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 99.5 7.3 65 65-134 29-107 (119)
132 2i2y_A Fusion protein consists 99.5 6.9E-14 2.4E-18 102.4 8.0 70 61-134 67-148 (150)
133 2jvr_A Nucleolar protein 3; RN 99.5 2.8E-14 9.4E-19 100.0 5.5 67 65-134 26-105 (111)
134 1wf1_A RNA-binding protein RAL 99.5 1.2E-13 4E-18 96.0 8.6 63 65-134 25-100 (110)
135 2f3j_A RNA and export factor b 99.5 4.2E-14 1.4E-18 106.8 6.6 70 65-134 86-167 (177)
136 1fjc_A Nucleolin RBD2, protein 99.5 3.8E-14 1.3E-18 96.0 5.7 68 63-134 12-91 (96)
137 1iqt_A AUF1, heterogeneous nuc 99.5 7.8E-15 2.7E-19 94.9 2.0 63 69-131 1-75 (75)
138 2bz2_A Negative elongation fac 99.5 6.5E-14 2.2E-18 99.4 6.9 67 63-134 35-111 (121)
139 2xs2_A Deleted in azoospermia- 99.5 1.7E-14 5.7E-19 98.9 3.7 69 65-134 7-86 (102)
140 1fj7_A Nucleolin RBD1, protein 99.5 7.4E-15 2.5E-19 100.5 1.8 70 64-134 14-95 (101)
141 3md3_A Nuclear and cytoplasmic 99.5 2.2E-13 7.4E-18 100.0 9.8 70 63-132 83-165 (166)
142 2kvi_A Nuclear polyadenylated 99.5 3.8E-14 1.3E-18 96.3 5.1 63 65-134 8-83 (96)
143 1l3k_A Heterogeneous nuclear r 99.5 2E-13 6.8E-18 103.2 9.4 72 64-135 101-184 (196)
144 2cqh_A IGF-II mRNA-binding pro 99.5 7.9E-14 2.7E-18 93.9 6.4 64 65-134 6-83 (93)
145 2hgm_A HNRPF protein, heteroge 99.5 5.9E-14 2E-18 100.4 5.9 69 64-133 39-120 (126)
146 4f02_A Polyadenylate-binding p 99.5 1.8E-13 6E-18 105.7 8.7 70 65-134 13-95 (213)
147 2qfj_A FBP-interacting repress 99.5 2.4E-13 8.3E-18 104.2 9.3 71 65-135 123-206 (216)
148 1whx_A Hypothetical protein ri 99.5 4.3E-14 1.5E-18 98.7 4.5 65 65-134 8-84 (111)
149 3egn_A RNA-binding protein 40; 99.5 6.6E-14 2.3E-18 101.7 5.5 71 65-135 43-131 (143)
150 2dha_A FLJ20171 protein; RRM d 99.4 4.7E-14 1.6E-18 100.5 4.5 69 65-133 21-104 (123)
151 3md3_A Nuclear and cytoplasmic 99.4 4.1E-13 1.4E-17 98.5 9.3 67 68-134 1-79 (166)
152 2e5g_A U6 snRNA-specific termi 99.4 6.6E-13 2.3E-17 89.6 9.4 65 65-134 6-82 (94)
153 1fxl_A Paraneoplastic encephal 99.4 4.5E-13 1.6E-17 98.3 8.8 68 67-134 2-82 (167)
154 1l3k_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 102.0 8.1 72 63-134 9-92 (196)
155 2voo_A Lupus LA protein; RNA-b 99.4 4.2E-13 1.4E-17 102.6 8.7 69 66-134 108-187 (193)
156 2yh0_A Splicing factor U2AF 65 99.4 7.6E-13 2.6E-17 100.1 10.1 71 64-134 111-194 (198)
157 2dit_A HIV TAT specific factor 99.4 1.5E-12 5.1E-17 90.9 10.8 69 63-134 11-102 (112)
158 3v4m_A Splicing factor U2AF 65 99.4 3.7E-13 1.3E-17 93.2 7.6 69 65-133 3-96 (105)
159 4f02_A Polyadenylate-binding p 99.4 3E-13 1E-17 104.4 7.6 68 66-134 102-181 (213)
160 2cjk_A Nuclear polyadenylated 99.4 1.4E-13 4.8E-18 101.4 5.5 69 66-134 86-166 (167)
161 1sjr_A Polypyrimidine tract-bi 99.4 4.2E-13 1.4E-17 99.8 7.8 70 65-137 44-127 (164)
162 2cq2_A Hypothetical protein LO 99.4 3.7E-13 1.3E-17 94.5 7.1 65 65-134 23-106 (114)
163 1b7f_A Protein (SXL-lethal pro 99.4 3.3E-13 1.1E-17 99.4 7.2 69 66-134 2-83 (168)
164 3zzy_A Polypyrimidine tract-bi 99.4 8.8E-13 3E-17 94.6 8.5 67 66-136 27-108 (130)
165 2g4b_A Splicing factor U2AF 65 99.4 6.2E-13 2.1E-17 98.4 7.9 67 65-131 92-171 (172)
166 1wg1_A KIAA1579 protein, homol 99.4 6.3E-13 2.1E-17 88.7 6.4 64 65-134 3-78 (88)
167 3tyt_A Heterogeneous nuclear r 99.4 8.3E-13 2.8E-17 101.8 8.0 65 66-134 3-80 (205)
168 2e44_A Insulin-like growth fac 99.4 6.5E-13 2.2E-17 89.8 6.3 67 65-134 13-92 (96)
169 3nmr_A Cugbp ELAV-like family 99.4 7.6E-13 2.6E-17 98.0 7.1 69 64-132 92-175 (175)
170 1wf0_A TDP-43, TAR DNA-binding 99.4 7.9E-13 2.7E-17 88.1 6.5 65 65-134 3-78 (88)
171 3ue2_A Poly(U)-binding-splicin 99.4 8.3E-13 2.8E-17 93.4 6.8 67 66-132 19-107 (118)
172 1jmt_A Splicing factor U2AF 35 99.4 5.5E-13 1.9E-17 92.2 5.7 57 75-131 45-103 (104)
173 1b7f_A Protein (SXL-lethal pro 99.4 2.1E-12 7.1E-17 95.1 8.8 68 64-131 86-168 (168)
174 2j8a_A Histone-lysine N-methyl 99.4 6.3E-13 2.1E-17 94.8 5.4 66 68-133 3-95 (136)
175 2diu_A KIAA0430 protein; struc 99.4 1.5E-12 5E-17 88.0 7.0 62 66-136 7-86 (96)
176 2e5i_A Heterogeneous nuclear r 99.4 5.3E-12 1.8E-16 89.9 10.0 63 68-135 26-103 (124)
177 3d2w_A TAR DNA-binding protein 99.3 1.6E-12 5.4E-17 87.2 6.6 65 65-134 9-84 (89)
178 2dnl_A Cytoplasmic polyadenyla 99.3 2.9E-12 1E-16 89.6 8.2 64 65-131 6-85 (114)
179 3pgw_A U1-A; protein-RNA compl 99.3 2.5E-12 8.7E-17 102.8 8.7 70 63-134 5-90 (282)
180 3smz_A Protein raver-1, ribonu 99.3 4.3E-12 1.5E-16 101.5 9.2 72 64-135 181-265 (284)
181 2qfj_A FBP-interacting repress 99.3 1.9E-12 6.6E-17 99.1 6.8 70 65-134 26-108 (216)
182 2hzc_A Splicing factor U2AF 65 99.3 1.6E-12 5.4E-17 86.2 5.4 61 65-130 4-86 (87)
183 3u1l_A PRE-mRNA-splicing facto 99.3 2.3E-12 7.7E-17 101.6 6.8 67 64-135 131-230 (240)
184 1fxl_A Paraneoplastic encephal 99.3 4.2E-12 1.4E-16 93.1 7.6 67 65-131 86-167 (167)
185 1fje_B Nucleolin RBD12, protei 99.3 5.1E-12 1.7E-16 93.9 8.0 67 64-134 96-174 (175)
186 2ghp_A U4/U6 snRNA-associated 99.3 8.1E-12 2.8E-16 100.3 8.3 72 63-134 206-291 (292)
187 2cjk_A Nuclear polyadenylated 99.3 4.3E-12 1.5E-16 93.4 5.6 67 66-133 2-80 (167)
188 3pgw_A U1-A; protein-RNA compl 99.3 1.5E-11 5E-16 98.3 8.6 66 63-132 203-281 (282)
189 2ghp_A U4/U6 snRNA-associated 99.3 1.2E-11 4E-16 99.4 7.8 71 62-133 36-117 (292)
190 3nmr_A Cugbp ELAV-like family 99.3 7.5E-12 2.6E-16 92.5 6.2 69 66-134 2-88 (175)
191 3s6e_A RNA-binding protein 39; 99.3 1.2E-11 4.2E-16 86.8 6.9 56 75-133 36-92 (114)
192 2adc_A Polypyrimidine tract-bi 99.2 1.6E-11 5.5E-16 95.6 6.7 68 63-134 30-110 (229)
193 3smz_A Protein raver-1, ribonu 99.2 3.7E-11 1.3E-15 96.0 8.5 69 66-134 94-175 (284)
194 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.7E-11 1.3E-15 82.4 6.9 55 75-135 36-91 (100)
195 3sde_A Paraspeckle component 1 99.2 4.1E-11 1.4E-15 95.2 7.9 66 63-133 18-95 (261)
196 3sde_A Paraspeckle component 1 99.2 4.9E-11 1.7E-15 94.7 7.2 69 66-134 95-179 (261)
197 2adc_A Polypyrimidine tract-bi 99.2 5.3E-11 1.8E-15 92.7 6.9 66 65-134 149-228 (229)
198 1fje_B Nucleolin RBD12, protei 99.1 4.4E-12 1.5E-16 94.2 0.5 71 63-134 9-91 (175)
199 1qm9_A Polypyrimidine tract-bi 99.1 2.1E-11 7.3E-16 92.4 4.2 65 66-134 2-79 (198)
200 1qm9_A Polypyrimidine tract-bi 99.1 5E-11 1.7E-15 90.3 6.2 66 65-134 118-197 (198)
201 3tyt_A Heterogeneous nuclear r 99.1 4.9E-11 1.7E-15 91.8 4.9 66 65-131 121-204 (205)
202 2yh0_A Splicing factor U2AF 65 99.1 1.6E-10 5.5E-15 87.1 6.2 64 66-134 3-88 (198)
203 2g4b_A Splicing factor U2AF 65 99.1 2.3E-10 7.9E-15 84.4 6.6 64 66-134 3-88 (172)
204 2dnr_A Synaptojanin-1; RRM dom 99.0 6.5E-10 2.2E-14 74.3 7.2 53 75-134 34-86 (91)
205 3tht_A Alkylated DNA repair pr 99.0 4.1E-10 1.4E-14 93.0 7.1 64 64-132 15-97 (345)
206 3dxb_A Thioredoxin N-terminall 98.8 1E-08 3.6E-13 79.2 6.2 58 75-132 148-211 (222)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 6.3E-09 2.2E-13 69.9 2.5 51 75-132 43-93 (95)
208 1owx_A Lupus LA protein, SS-B, 98.4 7E-07 2.4E-11 62.9 6.4 63 64-131 15-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.6 8.5E-05 2.9E-09 51.0 5.3 51 75-130 40-96 (117)
210 1wwh_A Nucleoporin 35, nucleop 96.7 0.0065 2.2E-07 42.2 6.9 61 66-131 23-94 (119)
211 1wey_A Calcipressin 1; structu 96.3 0.0064 2.2E-07 41.2 5.1 62 68-134 6-84 (104)
212 2kn4_A Immunoglobulin G-bindin 96.0 0.0055 1.9E-07 44.0 3.7 33 85-118 2-35 (158)
213 3p3d_A Nucleoporin 53; structu 95.4 0.011 3.8E-07 41.7 3.2 58 75-132 25-97 (132)
214 2i2y_A Fusion protein consists 94.9 0.0081 2.8E-07 42.9 1.3 39 94-133 10-50 (150)
215 2dhx_A Poly (ADP-ribose) polym 93.2 0.46 1.6E-05 32.0 7.2 62 66-134 7-84 (104)
216 1whv_A Poly(A)-specific ribonu 90.3 0.59 2E-05 31.2 5.1 35 75-116 34-69 (100)
217 3pq1_A Poly(A) RNA polymerase; 88.7 0.15 5.2E-06 43.4 1.6 45 68-116 54-108 (464)
218 3ctr_A Poly(A)-specific ribonu 82.2 0.71 2.4E-05 30.9 2.1 36 75-117 24-60 (101)
219 2g0c_A ATP-dependent RNA helic 66.2 5.9 0.0002 24.3 3.3 43 82-132 32-75 (76)
220 2ot8_C HnRNP M, heterogeneous 47.9 6.3 0.00022 19.9 0.8 8 177-184 17-24 (30)
221 2xze_Q Charged multivesicular 43.8 9.1 0.00031 21.0 1.1 14 14-27 24-37 (40)
222 1uw4_A UPF3X; nonsense mediate 21.0 1.7E+02 0.0058 18.6 6.1 27 96-122 44-71 (91)
223 3lpe_A Putative transcription 20.6 1.7E+02 0.0058 18.4 4.7 33 83-119 40-73 (92)
224 2e5p_A Protein PHF1, PHD finge 20.1 59 0.002 19.7 1.9 20 80-106 27-46 (68)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=7.1e-18 Score=124.64 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=67.4
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.|++|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999 8999999999999999984 899999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 029897 131 KRTNVP 136 (185)
Q Consensus 131 a~~~~~ 136 (185)
+++..+
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987644
No 2
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3.9e-19 Score=139.74 Aligned_cols=68 Identities=25% Similarity=0.421 Sum_probs=62.7
Q ss_pred CCCEEEEcC-----------cCccCCC--ceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 66 DSRSVFVGN-----------QHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G--~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
..++|||+| .+|++|| .|..|+|++++ +++++|||||+|.+.++|.+|| .||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 677999999 8999999 99999999998 5999999999999999999999 8999999999999998
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=116.54 Aligned_cols=69 Identities=26% Similarity=0.507 Sum_probs=65.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.++++|||+| ++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999 999999999999999998 4999999999999999999999 89999999999999999
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=3.8e-17 Score=139.45 Aligned_cols=73 Identities=26% Similarity=0.579 Sum_probs=67.2
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++||.|+.|.|+.++ ++.++|||||+|.+.++|.+|| .||++.|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35578999999 899999999999999997 5999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 029897 131 KRTNVP 136 (185)
Q Consensus 131 a~~~~~ 136 (185)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 5
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=9.8e-18 Score=125.16 Aligned_cols=74 Identities=27% Similarity=0.456 Sum_probs=66.6
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.....++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 446678999999 899999999999999997 5999999999999999999999 899999999999999
Q ss_pred ecCCCCC
Q 029897 130 VKRTNVP 136 (185)
Q Consensus 130 ~a~~~~~ 136 (185)
++.+..+
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976543
No 6
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-17 Score=113.94 Aligned_cols=70 Identities=23% Similarity=0.516 Sum_probs=65.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4568999999 8999999999999999988999999999999999999999 899999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=108.42 Aligned_cols=74 Identities=27% Similarity=0.468 Sum_probs=68.0
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.....+.++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 33456789999999 999999999999999997 5999999999999999999999 8999999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.++++.
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999775
No 8
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=2.1e-17 Score=117.75 Aligned_cols=74 Identities=26% Similarity=0.435 Sum_probs=67.5
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
......++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445678999999 899999999999999998 5999999999999999999999 89999999999999
Q ss_pred EecCCCC
Q 029897 129 TVKRTNV 135 (185)
Q Consensus 129 ~~a~~~~ 135 (185)
.++.+..
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9997653
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=112.93 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=64.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+.++|||+| ++|++||.|.+|+|+.|+. ++++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999 8999999999999999984 999999999999999999999 89999999999999998
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 10
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-16 Score=108.75 Aligned_cols=73 Identities=21% Similarity=0.386 Sum_probs=67.3
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
......++|||+| .+|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|| .||+..|.|++|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3446788999999 89999999999999998 8899999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 029897 130 VKRTNV 135 (185)
Q Consensus 130 ~a~~~~ 135 (185)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998753
No 11
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-16 Score=109.36 Aligned_cols=75 Identities=23% Similarity=0.479 Sum_probs=67.3
Q ss_pred CCCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE
Q 029897 59 LANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 125 (185)
Q Consensus 59 ~~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~ 125 (185)
.....+...++|||+| ++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|++ .|.|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3445567789999999 899999999999999998 4999999999999999999999 8887 899999
Q ss_pred eEEEecCCC
Q 029897 126 LKVTVKRTN 134 (185)
Q Consensus 126 i~V~~a~~~ 134 (185)
|.|.++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999754
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=108.20 Aligned_cols=75 Identities=21% Similarity=0.477 Sum_probs=68.6
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.......++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .||+..|.|++|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33446778999999 8999999999999999988999999999999999999999 99999999999999
Q ss_pred EecCCCC
Q 029897 129 TVKRTNV 135 (185)
Q Consensus 129 ~~a~~~~ 135 (185)
.+++++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997753
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=110.05 Aligned_cols=74 Identities=28% Similarity=0.524 Sum_probs=67.9
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
......++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3446788999999 899999999999999998 5999999999999999999999 89999999999999
Q ss_pred EecCCCC
Q 029897 129 TVKRTNV 135 (185)
Q Consensus 129 ~~a~~~~ 135 (185)
.++++..
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9997753
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=114.32 Aligned_cols=75 Identities=29% Similarity=0.473 Sum_probs=68.3
Q ss_pred CCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 60 ~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
........++|||+| .+|+.||.|..|+|+.++. ++++|||||+|.+.++|.+|| .||+..|.|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 344556789999999 8999999999999999984 899999999999999999999 899999999999
Q ss_pred EEEecCCC
Q 029897 127 KVTVKRTN 134 (185)
Q Consensus 127 ~V~~a~~~ 134 (185)
+|.++++.
T Consensus 115 ~v~~a~~~ 122 (139)
T 1u6f_A 115 KVALAASG 122 (139)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99999774
No 15
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=107.14 Aligned_cols=70 Identities=31% Similarity=0.591 Sum_probs=65.3
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| ++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3567999999 8999999999999999984 999999999999999999999 79999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+++
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=7.1e-16 Score=108.08 Aligned_cols=76 Identities=24% Similarity=0.483 Sum_probs=69.0
Q ss_pred CCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 60 ~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
........++|||+| .+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556789999999 899999999999999997 5999999999999999999999 899999999999
Q ss_pred EEEecCCCC
Q 029897 127 KVTVKRTNV 135 (185)
Q Consensus 127 ~V~~a~~~~ 135 (185)
+|.++++..
T Consensus 88 ~V~~a~~~~ 96 (115)
T 2dgo_A 88 RTNWATRKP 96 (115)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999997753
No 17
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.4e-16 Score=107.48 Aligned_cols=72 Identities=31% Similarity=0.400 Sum_probs=66.8
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 345678999999 8999999999999999988999999999999999999999 8999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9764
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.68 E-value=2.9e-16 Score=110.19 Aligned_cols=74 Identities=24% Similarity=0.409 Sum_probs=67.9
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.......++|||+| .+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445678999999 899999999999999998 5999999999999999999999 9999999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.+++++
T Consensus 99 V~~a~~~ 105 (115)
T 2cpz_A 99 VQLKRSK 105 (115)
T ss_dssp EECCCCS
T ss_pred EEEcCCC
Confidence 9999765
No 19
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=107.28 Aligned_cols=71 Identities=23% Similarity=0.531 Sum_probs=66.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.|++..|.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999 899999999999999998 499999999999999999999999999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
++.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=3e-16 Score=108.20 Aligned_cols=73 Identities=29% Similarity=0.413 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCC---eEeE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG---RQLK 127 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g---r~i~ 127 (185)
.....++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .||+..|.+ ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345689999999 8999999999999999988999999999999999999999 899999998 9999
Q ss_pred EEecCCCC
Q 029897 128 VTVKRTNV 135 (185)
Q Consensus 128 V~~a~~~~ 135 (185)
|.++++..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99997753
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.1e-16 Score=106.02 Aligned_cols=74 Identities=26% Similarity=0.444 Sum_probs=66.6
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.......++|||+| .+|++||.|..|+|+.++.+ ++|||||+|.+.++|.+|| .|++..|.|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999 89999999999999988754 8999999999999999999 89999999999999
Q ss_pred EecCCCC
Q 029897 129 TVKRTNV 135 (185)
Q Consensus 129 ~~a~~~~ 135 (185)
.++++..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9997753
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=109.27 Aligned_cols=72 Identities=31% Similarity=0.512 Sum_probs=66.7
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.....++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 445678999999 8999999999999999984 999999999999999999999 799999999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99765
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=108.55 Aligned_cols=72 Identities=31% Similarity=0.567 Sum_probs=66.5
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 35678999999 899999999999999997 4999999999999999999999 8999999999999999
Q ss_pred cCCCC
Q 029897 131 KRTNV 135 (185)
Q Consensus 131 a~~~~ 135 (185)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97753
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.3e-16 Score=107.69 Aligned_cols=75 Identities=21% Similarity=0.482 Sum_probs=68.1
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeC-C-CCCCceEEEEEEcCHHHHHHHH-hc-CCceeCCeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTD-K-FGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQ 125 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~-~-~~~~~g~afV~f~~~~~a~~al-~l-~~~~i~gr~ 125 (185)
.......++|||+| .+|++||.|..|.|+.+ + ++.++|||||+|.+.++|.+|| .| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34456789999999 89999999999999999 5 5999999999999999999999 89 999999999
Q ss_pred eEEEecCCCC
Q 029897 126 LKVTVKRTNV 135 (185)
Q Consensus 126 i~V~~a~~~~ 135 (185)
|+|.++++..
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998753
No 25
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.1e-15 Score=105.08 Aligned_cols=70 Identities=29% Similarity=0.479 Sum_probs=64.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++|| |..|+|+.++. ++++|||||+|.+.++|.+||.||+..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 45678999999 8999997 99999999984 99999999999999999999999999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
++.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=106.43 Aligned_cols=71 Identities=27% Similarity=0.467 Sum_probs=66.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+.++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4678999999 899999999999999998 5999999999999999999999 99999999999999999
Q ss_pred CCCC
Q 029897 132 RTNV 135 (185)
Q Consensus 132 ~~~~ 135 (185)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8753
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=107.72 Aligned_cols=73 Identities=30% Similarity=0.485 Sum_probs=67.1
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcC------CceeC
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLN------ESELH 122 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~------~~~i~ 122 (185)
......++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456788999999 8999999999999999984 899999999999999999999 899 99999
Q ss_pred CeEeEEEecCCC
Q 029897 123 GRQLKVTVKRTN 134 (185)
Q Consensus 123 gr~i~V~~a~~~ 134 (185)
|+.|.|.++.++
T Consensus 90 g~~l~v~~a~~~ 101 (111)
T 1x4h_A 90 GRQLKVDLAVTR 101 (111)
T ss_dssp SCEEEEECCCCC
T ss_pred CEEEEEEECCCC
Confidence 999999999765
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-16 Score=106.00 Aligned_cols=70 Identities=26% Similarity=0.499 Sum_probs=64.8
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-C-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-F-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++|| |..|.|+.++ + +.++|||||+|.+.++|.+||.|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 35568999999 8999999 9999999998 4 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+++.
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9775
No 29
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9e-16 Score=105.52 Aligned_cols=72 Identities=26% Similarity=0.500 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
......++|||+| .+|++||.|..|.|+.++.. ++|||||+|.+.++|.+|| .|++..|.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999 89999999999999998643 6899999999999999999 799999999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
++++.
T Consensus 89 ~a~~~ 93 (103)
T 2cqi_A 89 WATTP 93 (103)
T ss_dssp ECCCT
T ss_pred ECCCC
Confidence 99774
No 30
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-15 Score=105.67 Aligned_cols=73 Identities=19% Similarity=0.415 Sum_probs=64.7
Q ss_pred CCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 60 ~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
........++|||+| .+|++||.|..|.|+.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 334456789999999 89999999999999654 558999999999999999999 9999999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.++++.
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 9999764
No 31
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6e-16 Score=108.15 Aligned_cols=74 Identities=30% Similarity=0.596 Sum_probs=67.5
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCcee--------EEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCce
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVN--------RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESE 120 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~--------~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~ 120 (185)
......++|||+| .+|++||.|. .|+|+.++ ++.++|||||+|.+.++|.+|| .||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4556789999999 8999999999 69999996 5999999999999999999999 899999
Q ss_pred eCCeEeEEEecCCCC
Q 029897 121 LHGRQLKVTVKRTNV 135 (185)
Q Consensus 121 i~gr~i~V~~a~~~~ 135 (185)
|.|+.|+|.++++..
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999997753
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=106.34 Aligned_cols=70 Identities=29% Similarity=0.524 Sum_probs=65.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEE-EEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRV-TIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~-~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
...++|||+| .+|++||.|..| +|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999999 899999999999 999996 5999999999999999999999 7999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+.+.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9765
No 33
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=104.07 Aligned_cols=70 Identities=31% Similarity=0.515 Sum_probs=65.0
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.....++|||+| ++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345678999999 8999999999999999985 899999999999999999999 899999999999999
Q ss_pred ecC
Q 029897 130 VKR 132 (185)
Q Consensus 130 ~a~ 132 (185)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=4.4e-16 Score=104.10 Aligned_cols=72 Identities=60% Similarity=1.013 Sum_probs=66.3
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
..++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.||+..|.|+.|+|.++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 357999999 899999999999999997 59999999999999999999999999999999999999987
Q ss_pred CCCC
Q 029897 134 NVPG 137 (185)
Q Consensus 134 ~~~~ 137 (185)
+.++
T Consensus 85 ~~pg 88 (89)
T 3ucg_A 85 NRPG 88 (89)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 6543
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=103.92 Aligned_cols=69 Identities=26% Similarity=0.509 Sum_probs=63.1
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 467999999 899999999999999997 5999999999999999999999 899999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=107.36 Aligned_cols=71 Identities=25% Similarity=0.556 Sum_probs=66.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
..+.++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999 899999999999999997 4899999999999999999999 9999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+++.
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 9765
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=7e-16 Score=101.77 Aligned_cols=68 Identities=24% Similarity=0.470 Sum_probs=63.6
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
+.+|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|.|++|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999 899999999999999997 5999999999999999999999 8999999999999999976
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=104.60 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=65.9
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
......++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999 8999999999999999985 899999999999999999999 89999999999999
Q ss_pred EecCC
Q 029897 129 TVKRT 133 (185)
Q Consensus 129 ~~a~~ 133 (185)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=108.15 Aligned_cols=73 Identities=26% Similarity=0.430 Sum_probs=66.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.....++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 345678999999 8999999999999999984 999999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 029897 130 VKRTNV 135 (185)
Q Consensus 130 ~a~~~~ 135 (185)
+++++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997653
No 40
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=112.77 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=67.0
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeE--EEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCc----ee
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNR--VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES----EL 121 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~--~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~----~i 121 (185)
+......++|||+| ++|++||.|.. |+|++|+ +++++|||||+|.+. +|.+|| .||+. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 34456788999999 89999999976 9999999 699999999999999 999999 99999 99
Q ss_pred CCeEeEEEecCCCC
Q 029897 122 HGRQLKVTVKRTNV 135 (185)
Q Consensus 122 ~gr~i~V~~a~~~~ 135 (185)
.|+.|.|.++++..
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999997753
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=105.83 Aligned_cols=71 Identities=38% Similarity=0.625 Sum_probs=65.7
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| ++|++||.|..|+|+.++++.++|||||+|.+.++|.+|| .||+..|.|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345678999999 8999999999999999988899999999999999999999 7999999999999999
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=106.98 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=65.6
Q ss_pred CCCCEEEEcC-----------cCccC-CCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCce-eCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQS-CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE-LHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~-~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~-i~gr~i~V~~ 130 (185)
...++|||+| .+|++ ||.|..|.|+.++++.++|||||+|.+.++|.+|| .|++.. |.|++|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4578999999 89999 99999999999988999999999999999999999 899999 9999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+.+.
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9764
No 43
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=9.4e-16 Score=107.93 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=65.4
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.......++|||+| ++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33456789999999 899999999999999997 4999999999999999999999 8999999999999
Q ss_pred EEecC
Q 029897 128 VTVKR 132 (185)
Q Consensus 128 V~~a~ 132 (185)
|.+++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 44
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-15 Score=104.56 Aligned_cols=66 Identities=24% Similarity=0.442 Sum_probs=60.8
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCC-----eEeE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG-----RQLK 127 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g-----r~i~ 127 (185)
...++|||+| .+|++||.|..|.|+.+ |||||+|.+.++|.+|| .||++.|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5678999999 89999999999999876 89999999999999999 899999999 9999
Q ss_pred EEecCCCCC
Q 029897 128 VTVKRTNVP 136 (185)
Q Consensus 128 V~~a~~~~~ 136 (185)
|.++.++.+
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987644
No 45
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=5.2e-16 Score=107.19 Aligned_cols=73 Identities=25% Similarity=0.504 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCcee---CCeE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESEL---HGRQ 125 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i---~gr~ 125 (185)
......++|||+| .+|++||.|..|+|+.++. +.++|||||+|.+.++|.+|| .||+..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456778999999 8999999999999999984 999999999999999999999 8999998 8999
Q ss_pred eEEEecCCC
Q 029897 126 LKVTVKRTN 134 (185)
Q Consensus 126 i~V~~a~~~ 134 (185)
|.|.++++.
T Consensus 88 l~v~~a~~~ 96 (106)
T 2dgp_A 88 IQVKPADSE 96 (106)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCcc
Confidence 999999764
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=7.5e-16 Score=104.67 Aligned_cols=68 Identities=32% Similarity=0.512 Sum_probs=64.3
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
+++|||+| .+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|+.|.|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999 899999999999999997 4999999999999999999999 8999999999999999977
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 47
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=9.7e-16 Score=102.12 Aligned_cols=69 Identities=29% Similarity=0.550 Sum_probs=63.5
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|+|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346778999999 899999999999999998 49999999999999999999997789999999999987
Q ss_pred c
Q 029897 131 K 131 (185)
Q Consensus 131 a 131 (185)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-15 Score=103.98 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEcC--------------cCccCCCceeEEEEeeCCC----CCCceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 62 REEVDSRSVFVGN--------------QHFQSCGTVNRVTIRTDKF----GQPKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 62 ~~~~~~~~vfVgn--------------~~F~~~G~i~~~~i~~~~~----~~~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
......++|||+| ++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|| .||+..|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3445678999999 5899999999999998873 356799999999999999999 89999999
Q ss_pred CeEeEEEecCCCC
Q 029897 123 GRQLKVTVKRTNV 135 (185)
Q Consensus 123 gr~i~V~~a~~~~ 135 (185)
|++|+|.+|.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999997753
No 49
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=108.78 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=64.8
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
+...++|||+| .+|++||.|.+|.|+.++.+.++|||||+|.+.++|.+||.+++..|.|+.|.|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 45678999999 8999999999999999988999999999999999999999999999999999999874
Q ss_pred C
Q 029897 133 T 133 (185)
Q Consensus 133 ~ 133 (185)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=5.6e-16 Score=102.70 Aligned_cols=68 Identities=32% Similarity=0.621 Sum_probs=63.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|.|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4678999999 899999999999999996 5899999999999999999999 99999999999999987
Q ss_pred C
Q 029897 132 R 132 (185)
Q Consensus 132 ~ 132 (185)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=6.1e-16 Score=107.61 Aligned_cols=73 Identities=26% Similarity=0.450 Sum_probs=67.0
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
......++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3446678999999 899999999999999997 5999999999999999999999 89999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.+++++
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 999764
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=106.29 Aligned_cols=75 Identities=29% Similarity=0.550 Sum_probs=68.0
Q ss_pred CCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 60 ~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
........++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|++|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344456778999999 899999999999999997 4899999999999999999999 899999999999
Q ss_pred EEEecCCC
Q 029897 127 KVTVKRTN 134 (185)
Q Consensus 127 ~V~~a~~~ 134 (185)
+|.+++++
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999764
No 53
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-15 Score=102.58 Aligned_cols=73 Identities=21% Similarity=0.392 Sum_probs=65.4
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
.......++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||. +++.|.|+.|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 44456778999999 899999999999999997 49999999999999999999996 477899999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++.+.
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 999775
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=7.6e-16 Score=108.31 Aligned_cols=68 Identities=26% Similarity=0.473 Sum_probs=62.3
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
..+|||+| ++|++||.|.+|+|+.++ +.++|||||+|.+.++|.+|| .|+++.|.|++|.|.++.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46899999 999999999999999986 347999999999999999999 89999999999999999764
Q ss_pred C
Q 029897 135 V 135 (185)
Q Consensus 135 ~ 135 (185)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 55
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=104.31 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=63.8
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
....++|||+| ++|++|| +..|+|+.+++++++|||||+|.+.++|.+||.+|+..|.+|.|.|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 35678999999 9999999 45999999999999999999999999999999889999999999999886
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=103.95 Aligned_cols=70 Identities=29% Similarity=0.536 Sum_probs=64.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCC--C--CCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF--G--QPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~--~--~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.+.++|||+| ++|++||.|..|.|+.++. + .++|||||+|.+.++|.+|| .||+..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999 8999999999999998763 4 78999999999999999999 89999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++++.
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999764
No 57
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=107.52 Aligned_cols=70 Identities=17% Similarity=0.389 Sum_probs=64.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|.|+.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 4568999999 899999999999999997 4999999999999999999999559999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
++
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 58
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.4e-16 Score=107.86 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=65.8
Q ss_pred CCCCCCEEEEcC-----------cCccCCCce-eEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTV-NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i-~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
...+.++|||+| .+|+.||.| ..|+|+.+++++++|||||+|.+.++|.+||.+|+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 445678999999 899999999 89999999999999999999999999999996699999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=106.58 Aligned_cols=70 Identities=19% Similarity=0.392 Sum_probs=62.7
Q ss_pred CCCCCEEEEcC-----------cCccCCCc--eeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCc----eeCCe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGT--VNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES----ELHGR 124 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~--i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~----~i~gr 124 (185)
...-.||||+| ++|++||. |.+|+|++|+ +++++|||||+|.+.++|.+|| .||+. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34567999999 99999995 6789999998 4999999999999999999999 89886 58999
Q ss_pred EeEEEecCC
Q 029897 125 QLKVTVKRT 133 (185)
Q Consensus 125 ~i~V~~a~~ 133 (185)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 60
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1.4e-15 Score=108.01 Aligned_cols=73 Identities=55% Similarity=1.007 Sum_probs=66.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.|++..|.|+.|+|.+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4578999999 899999999999999997 5999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 029897 133 TNVPG 137 (185)
Q Consensus 133 ~~~~~ 137 (185)
+..++
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 75443
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=2.1e-16 Score=108.48 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=64.0
Q ss_pred CCCCEEEEcC-----------------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCC-e
Q 029897 65 VDSRSVFVGN-----------------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHG-R 124 (185)
Q Consensus 65 ~~~~~vfVgn-----------------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~g-r 124 (185)
...++|||+| ++|++||.|.+|+|+.++. ++++|||||+|.+.++|.+|| .||+..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999 6899999999999999985 999999999999999999999 899999999 9
Q ss_pred EeEEEecCC
Q 029897 125 QLKVTVKRT 133 (185)
Q Consensus 125 ~i~V~~a~~ 133 (185)
+|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 62
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=107.25 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=61.7
Q ss_pred CCEEEEcC-----------cCccCCC-ceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hc-CCceeCCeEeEEEec
Q 029897 67 SRSVFVGN-----------QHFQSCG-TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTVK 131 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G-~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l-~~~~i~gr~i~V~~a 131 (185)
+++|||+| ++|++|| .|.+|+|++++ ++.++|||||+|.+.++|.+|| .+ ++..|.|++|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999 8999999 89999999998 4999999999999999999999 66 566799999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 765
No 63
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=105.18 Aligned_cols=74 Identities=26% Similarity=0.415 Sum_probs=66.7
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
.......++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|.|+.|.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V 89 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP 89 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 33456789999999 899999999999999997 599999999999999999999944999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++.+.
T Consensus 90 ~~a~~~ 95 (105)
T 2dh8_A 90 KPCTPR 95 (105)
T ss_dssp CCSCCS
T ss_pred EEccCC
Confidence 999765
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=8.8e-16 Score=110.30 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=68.0
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.....+.++|||+| ++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|++|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456778999999 899999999999999998 4899999999999999999999 8999999999999
Q ss_pred EEecCCCC
Q 029897 128 VTVKRTNV 135 (185)
Q Consensus 128 V~~a~~~~ 135 (185)
|.+++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997754
No 65
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=101.69 Aligned_cols=69 Identities=26% Similarity=0.535 Sum_probs=62.1
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| ++|++||.| +|+.+.+++++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 456789999999 899999987 5677767899999999999999999999 7999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++++
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1.7e-15 Score=104.74 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=64.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35678999999 8999999999999999998999999999999999999999 89999999999999987
Q ss_pred C
Q 029897 132 R 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=103.12 Aligned_cols=69 Identities=26% Similarity=0.493 Sum_probs=64.1
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeE--------EEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNR--------VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~--------~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
....++|||+| ++|++||.|.. |+|+.++ ++.++|||||+|.+.++|.+|| .||+..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35678999999 89999999999 9999997 5999999999999999999999 89999999
Q ss_pred CeEeEEEecC
Q 029897 123 GRQLKVTVKR 132 (185)
Q Consensus 123 gr~i~V~~a~ 132 (185)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 68
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=1.8e-16 Score=106.71 Aligned_cols=68 Identities=25% Similarity=0.404 Sum_probs=59.0
Q ss_pred CEEEEcC-----------cCccCCC--ceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 68 RSVFVGN-----------QHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G--~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.+|||+| ++|++|| .|.+|+|+.++ +++++|||||+|.+.++|.+|| .||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999 8999999 99999999998 5999999999999999999999 899999999999999997
Q ss_pred CCC
Q 029897 133 TNV 135 (185)
Q Consensus 133 ~~~ 135 (185)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=101.23 Aligned_cols=70 Identities=24% Similarity=0.553 Sum_probs=63.8
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCC-C-CCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-G-QPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~-~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
..++|||+| .+|++||.|..|.|+.+.. + .++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999 8999999999999999884 4 48999999999999999999 79999999999999999
Q ss_pred CCCC
Q 029897 132 RTNV 135 (185)
Q Consensus 132 ~~~~ 135 (185)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 70
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=103.60 Aligned_cols=70 Identities=26% Similarity=0.493 Sum_probs=65.2
Q ss_pred CCCCEEEEcC-----------cCccCCCcee-EEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE----e
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVN-RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ----L 126 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~-~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~----i 126 (185)
...++|||+| .+|++||.|. .|+|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999 8999999999 99999998 5999999999999999999999 79999999999 9
Q ss_pred EEEecCCC
Q 029897 127 KVTVKRTN 134 (185)
Q Consensus 127 ~V~~a~~~ 134 (185)
+|.++++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999764
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.4e-15 Score=101.11 Aligned_cols=69 Identities=30% Similarity=0.559 Sum_probs=63.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4578999999 89999999999999984 6889999999999999999999 899999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 72
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.5e-16 Score=107.59 Aligned_cols=72 Identities=35% Similarity=0.521 Sum_probs=66.2
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
.+...++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+||.||+..|.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 345678999999 8999999999999999985 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+++.
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8653
No 73
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.5e-15 Score=102.37 Aligned_cols=73 Identities=18% Similarity=0.357 Sum_probs=66.2
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee--------
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-------- 121 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i-------- 121 (185)
......++|||+| .+|++||.|..|+|+.++++.++|||||+|.+.++|.+|| .||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 4456778999999 8999999999999999988999999999999999999999 8999999
Q ss_pred CCeEeEEEecCCC
Q 029897 122 HGRQLKVTVKRTN 134 (185)
Q Consensus 122 ~gr~i~V~~a~~~ 134 (185)
.+++|.|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998753
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=3.3e-15 Score=104.11 Aligned_cols=75 Identities=19% Similarity=0.421 Sum_probs=61.8
Q ss_pred CCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeE
Q 029897 60 ANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLK 127 (185)
Q Consensus 60 ~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~ 127 (185)
........++|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+||...+..|.|+.|.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 334456788999999 8999999999999999984 9999999999999999999994446999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.++.+.
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999764
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=104.33 Aligned_cols=72 Identities=26% Similarity=0.479 Sum_probs=62.5
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC--CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~--~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
......++|||+| .+|++|| |..|+|+.++ +++++|||||+|.+.++|.+||.|++..|.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3446679999999 8999999 9999999997 599999999999999999999999999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++++.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999764
No 76
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=7e-15 Score=101.13 Aligned_cols=64 Identities=23% Similarity=0.514 Sum_probs=58.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| ++|++||.|..|.|+ ++||||+|.+.++|.+|| .||+..|.|++|.|.+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 4578999999 899999999999985 569999999999999999 899999999999999997
Q ss_pred CCC
Q 029897 133 TNV 135 (185)
Q Consensus 133 ~~~ 135 (185)
+..
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 77
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=105.36 Aligned_cols=75 Identities=23% Similarity=0.406 Sum_probs=66.3
Q ss_pred CCCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 59 LANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 59 ~~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
.........++|||+| .+|++||.|..|.|+.++. .++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3344556789999999 8999999999999998864 48999999999999999999 899999999999
Q ss_pred EEEecCCC
Q 029897 127 KVTVKRTN 134 (185)
Q Consensus 127 ~V~~a~~~ 134 (185)
.|.+++++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999764
No 78
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=99.50 Aligned_cols=71 Identities=25% Similarity=0.514 Sum_probs=62.1
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.......++|||+| ++|+.|+ .|.++.++ ++.++|||||+|.+.++|.+|| .||++.|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456789999999 7888763 67788887 5899999999999999999999 8999999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.+++++
T Consensus 86 V~~a~~~ 92 (102)
T 2fc8_A 86 LDWAKPK 92 (102)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 79
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=3.7e-15 Score=105.31 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=65.6
Q ss_pred CCCCCCEEEEcC-----------cCccCCCc---eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~---i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
.....++|||+| ++|+.||. |..|+|+.++.++++|||||+|.+.++|.+||.||++.|.|+.|.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345678999999 89999998 8999999998899999999999999999999999999999999999
Q ss_pred EecCC
Q 029897 129 TVKRT 133 (185)
Q Consensus 129 ~~a~~ 133 (185)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 80
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=102.21 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=64.3
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++||.|..+.++.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999 899999999988888877 5899999999999999999999 9999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=98.73 Aligned_cols=70 Identities=21% Similarity=0.390 Sum_probs=65.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
....++|||+| ++|+.| .|..|+|+.+.+++++|||||+|.+.++|.+||.||+..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 35678999999 899999 999999999977999999999999999999999999999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.8e-15 Score=100.73 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=64.1
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeE-EEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~-~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| ++|++||.|.. |.|+.+.+++++|||||+|.+.++|.+||.+++..|+||.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 35678999999 89999999987 8899987799999999999999999999955999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 83
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=98.50 Aligned_cols=67 Identities=22% Similarity=0.461 Sum_probs=60.9
Q ss_pred CCCCCCEEEEcC---------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 63 EEVDSRSVFVGN---------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 63 ~~~~~~~vfVgn---------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.....++|||+| .+|++||.|..|.|. .++|||||+|.+.++|.+|| .|++..|.|++|+|.+++
T Consensus 11 ~~~~~~~l~V~n~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 11 APRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCCSEEEEECSSCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 345678999999 899999999999995 46899999999999999999 999999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 84
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-14 Score=98.78 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hc--CCceeCCeEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL--NESELHGRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l--~~~~i~gr~i~V 128 (185)
...++++|||+| .+|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .| ++..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345678999999 89999999999998865 899999999999999999 66 578899999999
Q ss_pred EecCCCC
Q 029897 129 TVKRTNV 135 (185)
Q Consensus 129 ~~a~~~~ 135 (185)
.+++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9997653
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=4.6e-15 Score=109.41 Aligned_cols=72 Identities=28% Similarity=0.488 Sum_probs=66.7
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999 899999999999999997 5999999999999999999999 8999999999999999
Q ss_pred cCCCC
Q 029897 131 KRTNV 135 (185)
Q Consensus 131 a~~~~ 135 (185)
+++..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98753
No 86
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.1e-15 Score=101.15 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=61.9
Q ss_pred CCCCEEEEcC---------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 65 VDSRSVFVGN---------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 65 ~~~~~vfVgn---------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.+.++|||+| .+|++||.|..|+|+.++.+ +|||||+|.+.++|.+|| .||+..|.|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3567999999 48899999999999998755 899999999999999999 89999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++++.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999764
No 87
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=110.90 Aligned_cols=68 Identities=29% Similarity=0.440 Sum_probs=63.0
Q ss_pred CCCEEEEcC-----------cCccCCC--ceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 66 DSRSVFVGN-----------QHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G--~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
..++|||+| .+|++|| .|..|+|+.|+ +++++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999 8999999 99999999998 5999999999999999999999 8999999999999999
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=1.7e-15 Score=109.59 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=68.1
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
+......++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445678999999 899999999999999998 5999999999999999999999 8999999999999
Q ss_pred EEecCCCC
Q 029897 128 VTVKRTNV 135 (185)
Q Consensus 128 V~~a~~~~ 135 (185)
|.++++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998753
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=102.62 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=63.5
Q ss_pred CCCCEEEEcC-----------cCccCCCc-eeEEEEe-eCCC-CCCceEEEEEEcCHHHHHHHH-hcC--CceeCCeEeE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGT-VNRVTIR-TDKF-GQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLK 127 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~-i~~~~i~-~~~~-~~~~g~afV~f~~~~~a~~al-~l~--~~~i~gr~i~ 127 (185)
.+.++|||+| .+|++||. |..|.|+ .++. +.++|||||+|.+.++|.+|| .|+ +..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4568999999 89999998 9999998 6664 899999999999999999999 896 5899999999
Q ss_pred EEecCCCC
Q 029897 128 VTVKRTNV 135 (185)
Q Consensus 128 V~~a~~~~ 135 (185)
|.++++..
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99997653
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=100.63 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=62.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4568999999 999999999999999997 4999999999999999999999 89999999999887765
Q ss_pred C
Q 029897 132 R 132 (185)
Q Consensus 132 ~ 132 (185)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=5.9e-15 Score=104.82 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=66.7
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345678999999 8999999999999999988999999999999999999999 7999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
|.+.
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 9764
No 92
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.8e-16 Score=105.35 Aligned_cols=70 Identities=37% Similarity=0.640 Sum_probs=65.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3467999999 899999999999999997 5899999999999999999999 89999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
.+.
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 765
No 93
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=106.92 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=61.0
Q ss_pred CCCCEEEEcC---------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 65 VDSRSVFVGN---------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 65 ~~~~~vfVgn---------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.+.++|||+| .+|++||.|..|.|.. +++++|||||+|.+.++|..|| .||+..|.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 4578999999 2799999999987753 5788999999999999999999 99999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.+++..
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999765
No 94
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=6.5e-16 Score=112.47 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=63.3
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
.....++|||+| ++|++|| |..|+|+.+++++++|||||+|.+.++|.+||.+|+..|.+|.|.|..+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 345678999999 8999999 7799999998899999999999999999999999999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
.+.
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=105.02 Aligned_cols=71 Identities=31% Similarity=0.580 Sum_probs=64.5
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
.......++|||+| .+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456789999999 899999999999999997 5999999999999999999999 8999999999999
Q ss_pred EEec
Q 029897 128 VTVK 131 (185)
Q Consensus 128 V~~a 131 (185)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.4e-15 Score=103.26 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=63.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
.+.++|||+| ++|+.| .|..|+|+.+++++++|||||+|.+.++|.+||.+|+..|+||.|.|..+..
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4467999999 899999 8999999999889999999999999999999999999999999999988854
No 97
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=98.57 Aligned_cols=68 Identities=26% Similarity=0.486 Sum_probs=61.7
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
....+.++|||+| .+|++||.|..|.|+.+ +|||||+|.+.++|.+|| .|++..|.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3445678999999 89999999999999864 899999999999999999 999999999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
++++.
T Consensus 85 ~a~~~ 89 (99)
T 2cpj_A 85 FACHS 89 (99)
T ss_dssp ESSCC
T ss_pred EcCCC
Confidence 99774
No 98
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-16 Score=110.78 Aligned_cols=71 Identities=25% Similarity=0.482 Sum_probs=65.1
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeE--------EEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNR--------VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~--------~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
..+.++|||+| .+|++||.|.. |.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35678999999 89999999998 8999997 4899999999999999999999 89999999
Q ss_pred CeEeEEEecCCC
Q 029897 123 GRQLKVTVKRTN 134 (185)
Q Consensus 123 gr~i~V~~a~~~ 134 (185)
|++|.|.+++++
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999999764
No 99
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-14 Score=96.94 Aligned_cols=65 Identities=31% Similarity=0.513 Sum_probs=58.9
Q ss_pred CCCCCCEEEEcC-----------cCccCC--CceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSC--GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~--G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.....++|||+| .+|++| |.|..|.++ +|||||+|.+.++|.+|| .||+..|.|++|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999 899999 999999873 689999999999999999 79999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++++.
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 999764
No 100
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=96.50 Aligned_cols=63 Identities=27% Similarity=0.521 Sum_probs=58.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+ +|||||+|.+.++|.+|| .||+..|.|++|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 4678999999 899999999999996 689999999999999999 899999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 101
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=2.3e-15 Score=97.49 Aligned_cols=63 Identities=21% Similarity=0.479 Sum_probs=59.4
Q ss_pred EEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 69 SVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 69 ~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
+|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.|++..|.|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999 899999999999999998 599999999999999999999999999999999999875
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=98.42 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCC--ceeCCeEeEEE
Q 029897 65 VDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE--SELHGRQLKVT 129 (185)
Q Consensus 65 ~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~--~~i~gr~i~V~ 129 (185)
.++++|||+| .+|++||.|..|.|+.+ +|||||+|.+.++|.+|| .|++ ..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4678999999 89999999999999875 689999999999999999 7875 45999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
+|+..
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99764
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=1.9e-15 Score=101.28 Aligned_cols=66 Identities=33% Similarity=0.662 Sum_probs=60.1
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
++|||+| ++|++||.|..|.|+.++. +.++|||||+|.+.+ |.+|+ .||+..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999 8999999999999999984 999999999999999 99999 89999999999999999765
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=7.5e-15 Score=101.49 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=62.2
Q ss_pred CCCCCEEEEcC-----------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCe-
Q 029897 64 EVDSRSVFVGN-----------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR- 124 (185)
Q Consensus 64 ~~~~~~vfVgn-----------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr- 124 (185)
....++|||+| .+|++||.|..|.|+ ..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34578999999 379999999999998 346899999999999999999999 8999999998
Q ss_pred EeEEEecCCC
Q 029897 125 QLKVTVKRTN 134 (185)
Q Consensus 125 ~i~V~~a~~~ 134 (185)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998653
No 105
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=7.1e-15 Score=106.58 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=65.6
Q ss_pred CCCCCCEEEEcC-----------cCccCCCc---eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~---i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
.....++|||+| ++|++||. |..|+|+.++.++++|||||+|.+.++|.+||.||+..|+||.|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 445678999999 89999999 8999999998899999999999999999999999999999999999
Q ss_pred EecCC
Q 029897 129 TVKRT 133 (185)
Q Consensus 129 ~~a~~ 133 (185)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98854
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=100.19 Aligned_cols=67 Identities=22% Similarity=0.478 Sum_probs=61.5
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|..|+|+.+ +|||||+|.+.++|.+|| .|++..|.|++|+|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35678999999 89999999999999876 899999999999999999 99999999999999999
Q ss_pred CCCC
Q 029897 132 RTNV 135 (185)
Q Consensus 132 ~~~~ 135 (185)
++..
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 107
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-14 Score=95.81 Aligned_cols=64 Identities=30% Similarity=0.537 Sum_probs=58.7
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|..|.|+ ++||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45678999999 899999999999996 459999999999999999 89999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
++.
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 108
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=97.04 Aligned_cols=67 Identities=19% Similarity=0.436 Sum_probs=60.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC--CeEeEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH--GRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~--gr~i~V 128 (185)
.....++|||+| ++|++||.|..|.|+.+ +|||||+|.+.++|.+|| .||+..|. |++|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345678999999 89999999999999764 789999999999999999 89999999 999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.+++++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999875
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=4.7e-15 Score=100.26 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| ++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|| .||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3458999999 899999999988888887 4899999999999999999999 89999999999999987
Q ss_pred C
Q 029897 132 R 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 110
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=8.7e-15 Score=102.90 Aligned_cols=64 Identities=23% Similarity=0.446 Sum_probs=54.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE-----eE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ-----LK 127 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~-----i~ 127 (185)
...++|||+| ++|++||.|..|.|+.+ |||||+|.+.++|.+|| .||++.|.|+. |+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4568999999 99999999999999765 99999999999999999 89999999998 77
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|..+.+.
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7776654
No 111
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=95.58 Aligned_cols=65 Identities=26% Similarity=0.492 Sum_probs=59.2
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hc-CCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l-~~~~i~gr~i~V~ 129 (185)
.+...++|||+| .+|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .| ++..|.|++|+|.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345678999999 89999999999999874 899999999999999999 78 9999999999999
Q ss_pred ecC
Q 029897 130 VKR 132 (185)
Q Consensus 130 ~a~ 132 (185)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 112
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.4e-14 Score=100.75 Aligned_cols=69 Identities=23% Similarity=0.452 Sum_probs=60.1
Q ss_pred CCCcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 59 LANREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 59 ~~~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
.........++|||+| .+|++||.|..|.|+ +|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3344557789999999 899999999999996 799999999999999999 899999999999
Q ss_pred EEEecCCC
Q 029897 127 KVTVKRTN 134 (185)
Q Consensus 127 ~V~~a~~~ 134 (185)
.|.++++.
T Consensus 96 ~V~~a~~~ 103 (108)
T 2jvo_A 96 EVVYSKLP 103 (108)
T ss_dssp EEESCSCC
T ss_pred EEEEecCC
Confidence 99999775
No 113
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.1e-15 Score=101.33 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC--CceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~--~~~i~gr~i~V~~ 130 (185)
...++|||+| .+|++||.|.+|+|+.+ ||||||+|.+.++|.+|| .|+ +..|.|++|.|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999 89999999999999875 799999999999999999 676 4789999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++++
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 9765
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=99.61 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=60.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCce----eEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTV----NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i----~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
....++|||+| .+|++||.| ..++++ ++.++|||||+|.+.++|.+|| .|++..|.|++|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35678999999 899999998 445544 5789999999999999999999 8999999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.++++.
T Consensus 99 v~~a~~~ 105 (115)
T 2cpx_A 99 IEFGKNK 105 (115)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999775
No 115
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.4e-14 Score=97.79 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=58.4
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCC--ceeCCeEeEEE
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE--SELHGRQLKVT 129 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~--~~i~gr~i~V~ 129 (185)
..+.++|||+| .+|++||.|..|.|+.+ ||||||+|.+.++|.+|+ .|++ ..|.|++|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35678999999 89999999999998764 899999999999999999 7765 45999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
+++.+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99764
No 116
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3e-14 Score=95.52 Aligned_cols=64 Identities=27% Similarity=0.520 Sum_probs=58.5
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|..|.|+ ++||||+|.+.++|.+|| .||+..|.|++|+|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 45678999999 899999999999996 459999999999999999 89999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
++.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=97.81 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
......++|||+| .+|++||.|. +.++.+ .++|||||+|.+.++|.+|| .||+..|.|+.|+|.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3445678999999 8999999997 677664 57999999999999999999 999999999999999
Q ss_pred ecCCCC
Q 029897 130 VKRTNV 135 (185)
Q Consensus 130 ~a~~~~ 135 (185)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997753
No 118
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=7.4e-15 Score=101.87 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=64.7
Q ss_pred CCCCCEEEEcC-----------cCccCCCc---eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEE
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 129 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~---i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~ 129 (185)
....++|||+| .+|+.||. |..|+|+.++.++++|||||+|.+.++|.+||.+++..|+|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 35678999999 89999988 89999999988999999999999999999999999999999999999
Q ss_pred ecCC
Q 029897 130 VKRT 133 (185)
Q Consensus 130 ~a~~ 133 (185)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8864
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=99.71 Aligned_cols=64 Identities=28% Similarity=0.540 Sum_probs=59.5
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCCC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 135 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~~ 135 (185)
++|||+| .+|++||.|..|.|+.+ ++|||||+|.+.++|.+|| .|++..|.|+.|.|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 4899999 89999999999999887 7899999999999999999 899999999999999997753
No 120
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.5e-14 Score=96.70 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.+..|||+| .+|.+||+|.+++|+. ++|||||+|.+.++|.+|+ .||+..|.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999 9999999999999976 5999999999999999999 999999999999999884
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=98.71 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=59.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCce--eCCeEeEEE
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE--LHGRQLKVT 129 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~--i~gr~i~V~ 129 (185)
..++++|||+| .+|++||.|.+|.|++ .||||||+|.+.++|.+|+ .|++.. |.|++|.|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 35678999999 9999999999999975 4899999999999999999 888775 789999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99764
No 122
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=101.80 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|+.||.|..+.++.+. +++++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45678999999 899999999885555554 699999999999999999999999999999999999998
Q ss_pred CC
Q 029897 132 RT 133 (185)
Q Consensus 132 ~~ 133 (185)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.5e-15 Score=95.69 Aligned_cols=63 Identities=22% Similarity=0.500 Sum_probs=58.9
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .++ ..|+|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999 899999999999999998 4999999999999999999999 788 9999999999986
No 124
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=6.8e-14 Score=97.01 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=62.5
Q ss_pred CCCCEEEEcC----------------cCccCCCceeEEEEeeCC-C-CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE
Q 029897 65 VDSRSVFVGN----------------QHFQSCGTVNRVTIRTDK-F-GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 125 (185)
Q Consensus 65 ~~~~~vfVgn----------------~~F~~~G~i~~~~i~~~~-~-~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~ 125 (185)
.++++|+|.| .+|++||.|.+|.|+.++ + +.++||+||+|.+.++|.+|+ .|||..|.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899988 679999999999999986 3 688999999999999999999 99999999999
Q ss_pred eEEEecCC
Q 029897 126 LKVTVKRT 133 (185)
Q Consensus 126 i~V~~a~~ 133 (185)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2e-14 Score=98.36 Aligned_cols=64 Identities=19% Similarity=0.364 Sum_probs=59.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|+|+. ++|||||+|.+.++|.+|| .||+..|.|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4568999999 8999999999999973 5899999999999999999 999999999999999987
Q ss_pred C
Q 029897 133 T 133 (185)
Q Consensus 133 ~ 133 (185)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 126
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=95.73 Aligned_cols=62 Identities=19% Similarity=0.419 Sum_probs=55.3
Q ss_pred CCEEEEcC-----------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCe-EeE
Q 029897 67 SRSVFVGN-----------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR-QLK 127 (185)
Q Consensus 67 ~~~vfVgn-----------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr-~i~ 127 (185)
+++|||+| .+|++||.|..|.|+ ..+++++|||||+|.+.++|.+|| .||+..|.|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 36899998 479999999999988 346899999999999999999999 8999999999 887
Q ss_pred EE
Q 029897 128 VT 129 (185)
Q Consensus 128 V~ 129 (185)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-13 Score=94.93 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC--CceeCCeEeE
Q 029897 63 EEVDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLK 127 (185)
Q Consensus 63 ~~~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~--~~~i~gr~i~ 127 (185)
...++++|||+| .+|++||.|..|.|+. ++|||||+|.+.++|.+|| .|+ +..|.|++|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 356789999999 7999999999999975 4899999999999999999 775 5669999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.+++..
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9999764
No 128
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=4.1e-14 Score=99.00 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=61.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3567999999 89999999999999876 556999999999999999999 799999999999999996
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9.7e-14 Score=94.60 Aligned_cols=66 Identities=21% Similarity=0.490 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 62 REEVDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 62 ~~~~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
......++|||+| .+|++||.|..|.| ++|||||+|.+.++|.+|| .||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445788999998 78999999999998 3899999999999999999 89999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.+++++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 130
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=1.9e-14 Score=97.61 Aligned_cols=69 Identities=14% Similarity=0.332 Sum_probs=61.3
Q ss_pred CCCCCEEEEcC---------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 64 EVDSRSVFVGN---------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 64 ~~~~~~vfVgn---------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
..+.++|||+| .+|++||.|..|.|+. ++.++|||||+|.+.++|..|+ .||+..|.|++|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 34678999999 4899999999998873 3667899999999999999999 8999999999999
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.++++.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999775
No 131
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.6e-14 Score=99.50 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC--CceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~--~~~i~gr~i~V~~ 130 (185)
.++++|||+| .+|++||.|..|.|+.+ +|||||+|.+.++|.+|| .|+ +..|.|++|.|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4578999999 89999999999999875 899999999999999999 777 4689999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++.+
T Consensus 104 a~~k 107 (119)
T 2ad9_A 104 SNHK 107 (119)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9765
No 132
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=6.9e-14 Score=102.42 Aligned_cols=70 Identities=26% Similarity=0.472 Sum_probs=63.6
Q ss_pred CcCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 61 NREEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 61 ~~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
.......++|||+| .+|++||.|..|+|+.+ ++|||||+|.+.++|.+|| .||+..|.|++|+|
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33456789999999 89999999999999887 6899999999999999999 89999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.+++++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999764
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=2.8e-14 Score=99.97 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCCEEEEcC-----------cCccCCC-ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G-~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| ++|++|| .|..+.|+.+ .++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3467999999 8999999 8999988643 47999999999999999999 89999999999999998
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+..
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=1.2e-13 Score=96.03 Aligned_cols=63 Identities=27% Similarity=0.482 Sum_probs=57.9
Q ss_pred CCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..|.| ++|||||+|.+.++|.+|| .|++..|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4568999999 67999999999998 5899999999999999999 99999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 135
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=4.2e-14 Score=106.81 Aligned_cols=70 Identities=21% Similarity=0.401 Sum_probs=65.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| ++|++||.|..|.|+.++++.++|||||+|.+.++|.+|| .||+..|.|++|+|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4568999999 8999999999999999988999999999999999999999 899999999999999996
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=3.8e-14 Score=96.01 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=59.5
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|++||.|..+ ..++.++|||||+|.+.++|.+|| .|++..|.|++|.|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345678999999 889999988655 335789999999999999999999 7999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++++
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 9764
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.48 E-value=7.8e-15 Score=94.91 Aligned_cols=63 Identities=19% Similarity=0.455 Sum_probs=58.6
Q ss_pred EEEEcC-----------cCccCCCceeEEEEeeCCC-CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 69 SVFVGN-----------QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 69 ~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
+|||+| .+|++||.|..|.|+.++. +.++|||||+|.+.++|.+||.+++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999 8999999999999999974 99999999999999999999977999999999999875
No 138
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=6.5e-14 Score=99.42 Aligned_cols=67 Identities=22% Similarity=0.461 Sum_probs=61.0
Q ss_pred CCCCCCEEEEcC---------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 63 EEVDSRSVFVGN---------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 63 ~~~~~~~vfVgn---------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.....++|||+| .+|++||.|..|.|+ .++|||||+|.+.++|.+|| .|++..|.|+.|+|.+++
T Consensus 35 ~~~~~~~lfVgnl~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 35 APRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCCEEEEECSSCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 345688999999 899999999999996 46899999999999999999 999999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 139
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=1.7e-14 Score=98.90 Aligned_cols=69 Identities=33% Similarity=0.610 Sum_probs=64.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
...++|||+| .+|++||.|..|.|+.++++.++|||||+|.+.++|.+||. ++..|+|+.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 4568999999 89999999999999999889999999999999999999999 99999999999998865
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 86 ~ 86 (102)
T 2xs2_A 86 K 86 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=7.4e-15 Score=100.53 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=62.4
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|.. .++.+. ++.++|||||+|.+.++|.+||.||+..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 34578999999 89999999987 666665 489999999999999999999999999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
+++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.2e-13 Score=100.00 Aligned_cols=70 Identities=24% Similarity=0.481 Sum_probs=64.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
.....++|||+| .+|++||.|..+.|+.+. ++.++|||||+|.+.++|.+|| .||+..|.|++|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 345678999999 899999999999999997 5999999999999999999999 899999999999999
Q ss_pred ecC
Q 029897 130 VKR 132 (185)
Q Consensus 130 ~a~ 132 (185)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.8e-14 Score=96.26 Aligned_cols=63 Identities=21% Similarity=0.519 Sum_probs=57.5
Q ss_pred CCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+.++|||+| .+|++||.|..|.|. +|||||+|.+.++|.+|| .|++..|.|++|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 5678999998 789999999999983 789999999999999999 89999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
++.
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 764
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=2e-13 Score=103.16 Aligned_cols=72 Identities=22% Similarity=0.481 Sum_probs=63.1
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|+|+.|.|.++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999 899999999999999998 599999999999999999999966899999999999999
Q ss_pred CCCC
Q 029897 132 RTNV 135 (185)
Q Consensus 132 ~~~~ 135 (185)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 7753
No 144
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.9e-14 Score=93.92 Aligned_cols=64 Identities=23% Similarity=0.438 Sum_probs=56.3
Q ss_pred CCCCEEEEcC-----------cCccCCCc-eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCC-ceeCCeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGT-VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE-SELHGRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~-i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~-~~i~gr~i~V~~ 130 (185)
...++|||+| .+|++||. |..+.+. ++|||||+|.+.++|.+|| .||+ ..|.|++|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4567999999 89999999 6655553 4899999999999999999 8999 999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+++.
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9764
No 145
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=5.9e-14 Score=100.39 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=61.8
Q ss_pred CCCCCEEEEcC-----------cCccCCCcee--EEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVN--RVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~--~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| ++|++| .|. .|+|+.++.|+++|||||+|.+.++|.+||.+++..|.||.|.|..
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 35678999999 899999 677 8999999889999999999999999999996688999999999988
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 743
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.8e-13 Score=105.72 Aligned_cols=70 Identities=24% Similarity=0.502 Sum_probs=63.7
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+.++|||+| ++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|| .+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3567999999 899999999999999998 5999999999999999999999 99999999999999988
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 553
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=2.4e-13 Score=104.18 Aligned_cols=71 Identities=25% Similarity=0.482 Sum_probs=65.9
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| ++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999 899999999999999997 5999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 029897 132 RTNV 135 (185)
Q Consensus 132 ~~~~ 135 (185)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7753
No 148
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=4.3e-14 Score=98.72 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=59.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..|.|+. ++|||||+|.+.++|.+|| .||+..|.|++|.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467999999 8999999999999875 5899999999999999999 899999999999999996
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=6.6e-14 Score=101.72 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=60.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEE--E----EeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRV--T----IRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~--~----i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
...++|||+| .+|++||.|..| . |....++.++|||||+|.+.++|.+|| .||+..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999 899999998764 1 211235889999999999999999999 899999999999
Q ss_pred EEEecCCCC
Q 029897 127 KVTVKRTNV 135 (185)
Q Consensus 127 ~V~~a~~~~ 135 (185)
.|.++++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997653
No 150
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-14 Score=100.52 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCCCEEEEcC-----------cCccCCCce----eEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTV----NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 129 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i----~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~ 129 (185)
...++|||+| ++|++||.| ..|.|+.+.+++++|||||+|.+.++|.+||.+|+..|.+|.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4568999999 899999875 6899999988999999999999999999999669999999999998
Q ss_pred ecCC
Q 029897 130 VKRT 133 (185)
Q Consensus 130 ~a~~ 133 (185)
.+.+
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8744
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.1e-13 Score=98.48 Aligned_cols=67 Identities=33% Similarity=0.496 Sum_probs=62.6
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~ 134 (185)
++|||+| .+|++||.|..|.|+.+++++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999 8999999999999999988889999999999999999999 99999999999999998654
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.6e-13 Score=89.64 Aligned_cols=65 Identities=32% Similarity=0.433 Sum_probs=56.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++||.|..| +.++ ++. ||||+|.+.++|.+||.|++..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 3457999999 899999999987 5554 344 9999999999999999999999999999999886
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=4.5e-13 Score=98.34 Aligned_cols=68 Identities=26% Similarity=0.516 Sum_probs=64.1
Q ss_pred CCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 67 SRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 67 ~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
.++|||+| .+|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999 899999999999999998 6999999999999999999999 8999999999999999876
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.43 E-value=3.2e-13 Score=102.04 Aligned_cols=72 Identities=22% Similarity=0.481 Sum_probs=65.1
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 345678999999 999999999999999998 49999999999999999999997799999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8654
No 155
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=4.2e-13 Score=102.59 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=62.8
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~~ 134 (185)
..++|||+| .+|++||.|..|+|+.+.++.++|||||+|.+.++|.+||.+.+..|.|++|.|.+++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 468999999 899999999999999998899999999999999999999965567999999999988653
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=7.6e-13 Score=100.07 Aligned_cols=71 Identities=24% Similarity=0.464 Sum_probs=66.3
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999 899999999999999997 6999999999999999999999 8999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+++.
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9765
No 157
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-12 Score=90.86 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=60.6
Q ss_pred CCCCCCEEEEcC----------------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCc
Q 029897 63 EEVDSRSVFVGN----------------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES 119 (185)
Q Consensus 63 ~~~~~~~vfVgn----------------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~ 119 (185)
....+++|+|.| .+|++||.|..|.| .++ .++|||||+|.+.++|.+|| .||+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 345688999999 48999999999965 443 37999999999999999999 99999
Q ss_pred eeCCeEeEEEecCCC
Q 029897 120 ELHGRQLKVTVKRTN 134 (185)
Q Consensus 120 ~i~gr~i~V~~a~~~ 134 (185)
.|.|++|+|.++.+.
T Consensus 88 ~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WFGGRQITAQAWDGT 102 (112)
T ss_dssp EETTEECEEEECCSC
T ss_pred EECCcEEEEEEeCCC
Confidence 999999999999764
No 158
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.7e-13 Score=93.21 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=61.2
Q ss_pred CCCCEEEEcC---------------------cCccCCCceeEEEEeeCCC---CCCceEEEEEEcCHHHHHHHH-hcCCc
Q 029897 65 VDSRSVFVGN---------------------QHFQSCGTVNRVTIRTDKF---GQPKGYAYVEFLQSEAVQEAL-HLNES 119 (185)
Q Consensus 65 ~~~~~vfVgn---------------------~~F~~~G~i~~~~i~~~~~---~~~~g~afV~f~~~~~a~~al-~l~~~ 119 (185)
.+++.|.+.| +.|++||.|.+|.|++++. +.++||+||+|.+.++|.+|+ .|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3567788888 7899999999999998874 368999999999999999999 99999
Q ss_pred eeCCeEeEEEecCC
Q 029897 120 ELHGRQLKVTVKRT 133 (185)
Q Consensus 120 ~i~gr~i~V~~a~~ 133 (185)
.|.||+|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998743
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.42 E-value=3e-13 Score=104.38 Aligned_cols=68 Identities=25% Similarity=0.466 Sum_probs=62.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
..++|||+| .+|++||.|..|+|+.+. +.++|||||+|.+.++|.+|| .||+..|+|++|.|.+|++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999 899999999999999886 347999999999999999999 8999999999999999976
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=1.4e-13 Score=101.44 Aligned_cols=69 Identities=22% Similarity=0.477 Sum_probs=64.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
..++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|.|++|.|.+|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 467999999 899999999999999997 59999999999999999999999999999999999999976
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=4.2e-13 Score=99.83 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=60.6
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCC--eEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g--r~i~V~~ 130 (185)
....+|||+| ++|++||.|.+|.|+..+ ++|||||+|.+.++|.+|+ .|||..|.| ++|+|.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3446799999 899999999999997543 5899999999999999999 999999965 9999999
Q ss_pred cCCCCCC
Q 029897 131 KRTNVPG 137 (185)
Q Consensus 131 a~~~~~~ 137 (185)
+++....
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9876433
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.7e-13 Score=94.49 Aligned_cols=65 Identities=22% Similarity=0.422 Sum_probs=57.6
Q ss_pred CCCCEEEE--cC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee-----CCeE
Q 029897 65 VDSRSVFV--GN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-----HGRQ 125 (185)
Q Consensus 65 ~~~~~vfV--gn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i-----~gr~ 125 (185)
.+.++||| +| ++|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .|||.+| .+++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 34678999 76 89999999999988653 799999999999999999 9999998 6899
Q ss_pred eEEEecCCC
Q 029897 126 LKVTVKRTN 134 (185)
Q Consensus 126 i~V~~a~~~ 134 (185)
|.|.+++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999753
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=3.3e-13 Score=99.40 Aligned_cols=69 Identities=29% Similarity=0.472 Sum_probs=64.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 467999999 899999999999999997 5999999999999999999999 899999999999999987
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=8.8e-13 Score=94.62 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=59.1
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceE-EEEEEcCHHHHHHHH-hcCCceeCC--eEeEEEe
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELHG--RQLKVTV 130 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~-afV~f~~~~~a~~al-~l~~~~i~g--r~i~V~~ 130 (185)
.--.|||+| .+|++||.|.+|.|+.. .+|| |||+|.+.++|.+|+ .|||..|.| ++|+|++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 334688999 99999999999988764 3788 999999999999999 999999988 9999999
Q ss_pred cCCCCC
Q 029897 131 KRTNVP 136 (185)
Q Consensus 131 a~~~~~ 136 (185)
+++..-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 987643
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=6.2e-13 Score=98.40 Aligned_cols=67 Identities=25% Similarity=0.496 Sum_probs=63.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|.|++|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3478999999 899999999999999997 6999999999999999999999 89999999999999987
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=6.3e-13 Score=88.73 Aligned_cols=64 Identities=22% Similarity=0.392 Sum_probs=57.8
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
...++|||+| .+|++| .|..|+|. +++|||||+|.+.++|.+|+ .||+..|.|++|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 3467999999 899999 99999885 47999999999999999999 899999999999999986
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=8.3e-13 Score=101.79 Aligned_cols=65 Identities=31% Similarity=0.442 Sum_probs=60.0
Q ss_pred CCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
++++|||+| .+|++||.|.+|+|+.+ .+|||||+|.+.++|..|| .||+..|.|++|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 567999999 89999999999999876 4899999999999999999 899999999999999986
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=6.5e-13 Score=89.82 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=59.0
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEE-EEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~-~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..| .|+.++. .+.|||+|.+.++|.+|| .||+..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999 899999999999 4887753 334999999999999999 89999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=7.6e-13 Score=97.97 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=62.9
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC---CeEeEE
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLKV 128 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~---gr~i~V 128 (185)
....++|||+| ++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|| .||+..+. +++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34678999999 8999999999999999988999999999999999999999 99998876 499999
Q ss_pred EecC
Q 029897 129 TVKR 132 (185)
Q Consensus 129 ~~a~ 132 (185)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.9e-13 Score=88.13 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=55.5
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
...++|||+| .+|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. ...+.+++|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 3568999999 89999999999999876 699999999999999876532 4567999999999876
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=8.3e-13 Score=93.37 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=59.8
Q ss_pred CCCEEEEcC----------------cCccCCCceeEEEEeeCCC-----CCCceEEEEEEcCHHHHHHHH-hcCCceeCC
Q 029897 66 DSRSVFVGN----------------QHFQSCGTVNRVTIRTDKF-----GQPKGYAYVEFLQSEAVQEAL-HLNESELHG 123 (185)
Q Consensus 66 ~~~~vfVgn----------------~~F~~~G~i~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~al-~l~~~~i~g 123 (185)
++++|++.| +.|++||.|.+|.|+.++. +.++||+||+|.+.++|.+|+ .|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 356888888 7889999999999998852 457899999999999999999 999999999
Q ss_pred eEeEEEecC
Q 029897 124 RQLKVTVKR 132 (185)
Q Consensus 124 r~i~V~~a~ 132 (185)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 172
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=5.5e-13 Score=92.20 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=53.2
Q ss_pred cCc-cCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 75 QHF-QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 75 ~~F-~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
.+| ++||.|.+|.|+.+..++++|||||+|.+.++|.+|+ .|||..|.||+|+|.++
T Consensus 45 ~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 45 TEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 347 9999999999999887889999999999999999999 99999999999999875
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=2.1e-12 Score=95.07 Aligned_cols=68 Identities=31% Similarity=0.543 Sum_probs=63.0
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCC--eEeEE
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKV 128 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~g--r~i~V 128 (185)
....++|||+| .+|++||.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 35678999999 899999999999999998 6999999999999999999999 899999987 99999
Q ss_pred Eec
Q 029897 129 TVK 131 (185)
Q Consensus 129 ~~a 131 (185)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 174
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=6.3e-13 Score=94.78 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=56.2
Q ss_pred CEEEEcC---------------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcC----HHH----HHHHH---hcCCce
Q 029897 68 RSVFVGN---------------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQ----SEA----VQEAL---HLNESE 120 (185)
Q Consensus 68 ~~vfVgn---------------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~----~~~----a~~al---~l~~~~ 120 (185)
.+|||+| .+|++||+|.+|.++.|+ +|.++|||||+|.+ +.. |.+|+ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 5789988 899999999999999999 59999999999996 322 67776 379999
Q ss_pred eCCeEeEEEecCC
Q 029897 121 LHGRQLKVTVKRT 133 (185)
Q Consensus 121 i~gr~i~V~~a~~ 133 (185)
|+|++|+|...+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997653
No 175
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=87.96 Aligned_cols=62 Identities=19% Similarity=0.425 Sum_probs=54.3
Q ss_pred CCCE-EEEcC---------------cCccCC-CceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeE
Q 029897 66 DSRS-VFVGN---------------QHFQSC-GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 127 (185)
Q Consensus 66 ~~~~-vfVgn---------------~~F~~~-G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~ 127 (185)
+..| |||+| ++|++| |+|.+| ++ |||||.|.+.++|.+|+ .|+|..|.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3455 99999 699999 499887 22 99999999999999999 9999999999999
Q ss_pred EEecCCCCC
Q 029897 128 VTVKRTNVP 136 (185)
Q Consensus 128 V~~a~~~~~ 136 (185)
|++|+.+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987643
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=5.3e-12 Score=89.92 Aligned_cols=63 Identities=27% Similarity=0.320 Sum_probs=55.6
Q ss_pred CEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceE-EEEEEcCHHHHHHHH-hcCCceeCC--eEeEEEecC
Q 029897 68 RSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELHG--RQLKVTVKR 132 (185)
Q Consensus 68 ~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~-afV~f~~~~~a~~al-~l~~~~i~g--r~i~V~~a~ 132 (185)
..|||+| .+|++||.|..|.|+.. .|| |||+|.+.++|..|+ .|||..|.| ++|+|.+|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3468999 99999999999999752 386 999999999999999 999999987 699999998
Q ss_pred CCC
Q 029897 133 TNV 135 (185)
Q Consensus 133 ~~~ 135 (185)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=1.6e-12 Score=87.20 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=52.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
....+|||+| .+|++||.|.+|+|+.+ ++|||||+|.+.++|.++... ...+.|+.|.|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcCC
Confidence 4567999999 89999999999999885 799999999999999853322 3446799999999976
Q ss_pred C
Q 029897 134 N 134 (185)
Q Consensus 134 ~ 134 (185)
+
T Consensus 84 k 84 (89)
T 3d2w_A 84 K 84 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 178
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-12 Score=89.59 Aligned_cols=64 Identities=30% Similarity=0.424 Sum_probs=53.4
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-C---CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-F---GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 128 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~---~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V 128 (185)
...++|||+| ++|++||.|. +.++.++ + |+++|||||+|.+.++|.+|| .|+ .|+|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999 8999999999 8888876 3 689999999999999999999 773 366766666
Q ss_pred Eec
Q 029897 129 TVK 131 (185)
Q Consensus 129 ~~a 131 (185)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=2.5e-12 Score=102.75 Aligned_cols=70 Identities=16% Similarity=0.347 Sum_probs=63.0
Q ss_pred CCCCCCEEEEcC---------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEe
Q 029897 63 EEVDSRSVFVGN---------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQL 126 (185)
Q Consensus 63 ~~~~~~~vfVgn---------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i 126 (185)
.....++|||+| .+|++||.|..|+|+. +++++|||||+|.+.++|.+|| .||+..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 345688999999 3899999999999876 5789999999999999999999 999999999999
Q ss_pred EEEecCCC
Q 029897 127 KVTVKRTN 134 (185)
Q Consensus 127 ~V~~a~~~ 134 (185)
+|.+++..
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99998664
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=4.3e-12 Score=101.49 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=66.8
Q ss_pred CCCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 64 EVDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 64 ~~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
....++|||+| .+|+.||.|..|.|+.+.++.++|||||+|.+.++|.+|+ .||+..|.|++|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 35678999999 7899999999999999988999999999999999999999 8999999999999999
Q ss_pred cCCCC
Q 029897 131 KRTNV 135 (185)
Q Consensus 131 a~~~~ 135 (185)
+.+..
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 97653
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.33 E-value=1.9e-12 Score=99.10 Aligned_cols=70 Identities=33% Similarity=0.476 Sum_probs=61.2
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
...++|||+| .+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3467999999 899999999999999998 5999999999999999999999 79999999999999877
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 182
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=1.6e-12 Score=86.18 Aligned_cols=61 Identities=30% Similarity=0.561 Sum_probs=55.5
Q ss_pred CCCCEEEEcC-----------cCccCC----C-------ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeC
Q 029897 65 VDSRSVFVGN-----------QHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELH 122 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~----G-------~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~ 122 (185)
...++|||+| .+|++| | .|.++.++.+ +|||||+|.+.++|.+||.||+..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 3568999999 899999 8 8999999764 89999999999999999999999999
Q ss_pred CeEeEEEe
Q 029897 123 GRQLKVTV 130 (185)
Q Consensus 123 gr~i~V~~ 130 (185)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=2.3e-12 Score=101.58 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=58.9
Q ss_pred CCCCCEEEEcC--------------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCcee-
Q 029897 64 EVDSRSVFVGN--------------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL- 121 (185)
Q Consensus 64 ~~~~~~vfVgn--------------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i- 121 (185)
....++|||+| .+|++||.|..|+|+. ++|||||+|.+.++|+.|+ .|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 45789999998 3699999999999986 4899999999999999999 9999999
Q ss_pred -----------CCeEeEEEecCCCC
Q 029897 122 -----------HGRQLKVTVKRTNV 135 (185)
Q Consensus 122 -----------~gr~i~V~~a~~~~ 135 (185)
.|+.|.|.+|+..+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=4.2e-12 Score=93.09 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=61.1
Q ss_pred CCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeE--eEEE
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ--LKVT 129 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~--i~V~ 129 (185)
...++|||+| .+|++||.|..++|+.+. ++.++|||||+|.+.++|.+|+ .||+..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 4568999999 899999999999999998 5999999999999999999999 89999999965 8887
Q ss_pred ec
Q 029897 130 VK 131 (185)
Q Consensus 130 ~a 131 (185)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.31 E-value=5.1e-12 Score=93.88 Aligned_cols=67 Identities=22% Similarity=0.404 Sum_probs=59.5
Q ss_pred CCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEec
Q 029897 64 EVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 131 (185)
Q Consensus 64 ~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a 131 (185)
....++|||+| .+|++||.|..+ ..++.++|||||+|.+.++|.+|| .||+..|.|++|.|.++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 34678999999 899999988755 446889999999999999999999 89999999999999999
Q ss_pred CCC
Q 029897 132 RTN 134 (185)
Q Consensus 132 ~~~ 134 (185)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.28 E-value=8.1e-12 Score=100.29 Aligned_cols=72 Identities=19% Similarity=0.451 Sum_probs=65.0
Q ss_pred CCCCCCEEEEcC------------cCccCCCceeEEEEeeCCC--CCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEE
Q 029897 63 EEVDSRSVFVGN------------QHFQSCGTVNRVTIRTDKF--GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 128 (185)
Q Consensus 63 ~~~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~--~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V 128 (185)
.....++|||+| .+|++||.|..|+|+.+.. +.++|||||+|.+.++|.+||.||+..|.|++|.|
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISV 285 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEE
Confidence 345678999999 6899999999999999886 99999999999999999999999999999999999
Q ss_pred EecCCC
Q 029897 129 TVKRTN 134 (185)
Q Consensus 129 ~~a~~~ 134 (185)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999764
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=4.3e-12 Score=93.39 Aligned_cols=67 Identities=24% Similarity=0.500 Sum_probs=60.1
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~ 133 (185)
++++|||+| .+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.. +..|.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 467999999 899999999999999997 599999999999999999999952 5789999999988754
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=1.5e-11 Score=98.32 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=60.1
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEE
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~ 129 (185)
.....++|||+| ++|++||.|..|+|+.++ +|||||+|.+.++|.+|| .||+..|. |+.|+|.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 345678999999 899999999999999764 689999999999999999 89999999 9999999
Q ss_pred ecC
Q 029897 130 VKR 132 (185)
Q Consensus 130 ~a~ 132 (185)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=1.2e-11 Score=99.37 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 62 REEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 62 ~~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
......++|||+| .+|+.||.|..|+|+.+..+ ++|||||+|.+.++|.+||.+++..|.|++|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 3446788999999 89999999999999998754 48999999999999999999999999999999988
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+..
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 743
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=7.5e-12 Score=92.54 Aligned_cols=69 Identities=25% Similarity=0.457 Sum_probs=61.3
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCC-C--CCceEEEEEEcCHHHHHHHH-hcCCceeC---CeEeE
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKF-G--QPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLK 127 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~-~--~~~g~afV~f~~~~~a~~al-~l~~~~i~---gr~i~ 127 (185)
+.++|||+| ++|++||.|..|+|+.++. + .++|||||+|.+.++|.+|+ .|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 568999999 9999999999999999985 4 89999999999999999999 89998876 67888
Q ss_pred EEecCCC
Q 029897 128 VTVKRTN 134 (185)
Q Consensus 128 V~~a~~~ 134 (185)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8877543
No 191
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=1.2e-11 Score=86.77 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=51.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 133 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~ 133 (185)
+.|++||.|.+|.|+.+. .+||+||+|.+.++|.+|+ .|||..|+||.|.|.++..
T Consensus 36 ~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 36 EECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 789999999999997653 5999999999999999999 9999999999999998743
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.22 E-value=1.6e-11 Score=95.65 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=62.1
Q ss_pred CCCCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEE
Q 029897 63 EEVDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 129 (185)
Q Consensus 63 ~~~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~ 129 (185)
....+++|||+| .+|++||.|..|+|+.++ +|||||+|.+.++|.+|| .|++..|.|+.|.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346789999999 789999999999999874 899999999999999999 899999999999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
+++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98764
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.21 E-value=3.7e-11 Score=96.04 Aligned_cols=69 Identities=23% Similarity=0.382 Sum_probs=64.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..++|||+| .+|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 457999999 899999999999999998 5999999999999999999999 999999999999999996
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
+.
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=82.38 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=48.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecCCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 135 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~~~~ 135 (185)
.+|++||.|..|.|+ ++++|||||+|.+.++|..|| .+++ +.+++|+|.++++..
T Consensus 36 ~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 36 RLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 789999999999998 357999999999999999999 6444 679999999997653
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=4.1e-11 Score=95.16 Aligned_cols=66 Identities=21% Similarity=0.405 Sum_probs=59.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|+.||.|..|.|.. ++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345678999999 8999999999999965 4899999999999999999 8999999999999999
Q ss_pred cCC
Q 029897 131 KRT 133 (185)
Q Consensus 131 a~~ 133 (185)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.16 E-value=4.9e-11 Score=94.70 Aligned_cols=69 Identities=25% Similarity=0.343 Sum_probs=61.4
Q ss_pred CCCEEEEcC-----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC-CceeC---CeEeEEE
Q 029897 66 DSRSVFVGN-----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN-ESELH---GRQLKVT 129 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~-~~~i~---gr~i~V~ 129 (185)
..++|||+| .+|+.||.|..|.|+.+.++.++|||||+|.+.++|.+|| .|+ +..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 467999999 8999999999999999988999999999999999999999 884 44554 9999999
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98654
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.15 E-value=5.3e-11 Score=92.69 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=59.7
Q ss_pred CCCCEEEEcC-----------cCccCCC-ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G-~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~~ 130 (185)
...++|||+| .+|++|| .|..|+|+.+ .+|||||+|.+.++|.+|| .|++..|. |++|+|.+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 3478999999 8999999 9999999654 4799999999999999999 89999999 99999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9764
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.15 E-value=4.4e-12 Score=94.19 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=59.9
Q ss_pred CCCCCCEEEEcC-----------cCccCCCceeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEe
Q 029897 63 EEVDSRSVFVGN-----------QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 130 (185)
Q Consensus 63 ~~~~~~~vfVgn-----------~~F~~~G~i~~~~i~~~~-~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~ 130 (185)
.....++|||+| .+|..||.|..+ ++.+. ++.++|||||+|.+.++|.+||.|++..|.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 345678999999 688899877663 33333 58899999999999999999999999999999999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+.+.
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8764
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=2.1e-11 Score=92.39 Aligned_cols=65 Identities=32% Similarity=0.519 Sum_probs=59.7
Q ss_pred CCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 66 DSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 66 ~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.+++|||+| .+|++||.|..|+|+.++ +|||||+|.+.++|.+|| .|++..|.|++|.|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 467999998 789999999999998874 899999999999999999 799999999999999997
Q ss_pred CC
Q 029897 133 TN 134 (185)
Q Consensus 133 ~~ 134 (185)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=5e-11 Score=90.33 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=60.0
Q ss_pred CCCCEEEEcC-----------cCccCCC-ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC-CeEeEEEe
Q 029897 65 VDSRSVFVGN-----------QHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTV 130 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G-~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~-gr~i~V~~ 130 (185)
.+.++|||+| ++|++|| .|..|+|+.+ .+|||||+|.+.++|.+|+ .||+..|. |++|+|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4578999999 8999999 9999999765 3899999999999999999 89999999 99999999
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.11 E-value=4.9e-11 Score=91.78 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCCCEEEEcC-----------cCccCCCce--eEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCe----Ee
Q 029897 65 VDSRSVFVGN-----------QHFQSCGTV--NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR----QL 126 (185)
Q Consensus 65 ~~~~~vfVgn-----------~~F~~~G~i--~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr----~i 126 (185)
.++++|||+| ++|++||.| ..|+|+.++ +.++|||||+|.+.++|.+|| .||+..|.|. ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 3567999999 999999999 899998876 556799999999999999999 9999999876 56
Q ss_pred EEEec
Q 029897 127 KVTVK 131 (185)
Q Consensus 127 ~V~~a 131 (185)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.07 E-value=1.6e-10 Score=87.13 Aligned_cols=64 Identities=28% Similarity=0.513 Sum_probs=55.1
Q ss_pred CCCEEEEcC-----------cCccCC----C-------ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCC
Q 029897 66 DSRSVFVGN-----------QHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 123 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~----G-------~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~g 123 (185)
..++|||+| ++|++| | .|..+.+ +.++|||||+|.+.++|.+||.|++..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 468999999 899999 4 5566655 456899999999999999999999999999
Q ss_pred eEeEEEecCCC
Q 029897 124 RQLKVTVKRTN 134 (185)
Q Consensus 124 r~i~V~~a~~~ 134 (185)
++|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99999988664
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.06 E-value=2.3e-10 Score=84.38 Aligned_cols=64 Identities=27% Similarity=0.516 Sum_probs=56.0
Q ss_pred CCCEEEEcC-----------cCccCC----C-------ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCC
Q 029897 66 DSRSVFVGN-----------QHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 123 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~~----G-------~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~g 123 (185)
+.++|||+| ++|++| | .|..+.+.. ++|||||+|.+.++|.+||.|++..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHHHhCCcEecC
Confidence 467999999 889999 6 677777744 5899999999999999999999999999
Q ss_pred eEeEEEecCCC
Q 029897 124 RQLKVTVKRTN 134 (185)
Q Consensus 124 r~i~V~~a~~~ 134 (185)
++|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 204
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=6.5e-10 Score=74.30 Aligned_cols=53 Identities=32% Similarity=0.513 Sum_probs=49.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecCCC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 134 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~~~ 134 (185)
..|.+||.|..++|+.++ +||+|.+.++|.+||.|||..|.||.|+|+.+.+.
T Consensus 34 ~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 34 QQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred HHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence 789999999999998873 89999999999999999999999999999998763
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4.1e-10 Score=93.01 Aligned_cols=64 Identities=23% Similarity=0.454 Sum_probs=54.3
Q ss_pred CCCCCEEEEcC-------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeC---Ce--
Q 029897 64 EVDSRSVFVGN-------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH---GR-- 124 (185)
Q Consensus 64 ~~~~~~vfVgn-------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~---gr-- 124 (185)
..++++|||+| ++|++||.|..|.|+. .||||||+|.+.++|++|+ .|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999998 8999999999988764 4799999999999999999 99999983 45
Q ss_pred EeEEEecC
Q 029897 125 QLKVTVKR 132 (185)
Q Consensus 125 ~i~V~~a~ 132 (185)
+|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777663
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=1e-08 Score=79.21 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=52.6
Q ss_pred cCccCCCceeEEEEeeCCC-----CCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 75 QHFQSCGTVNRVTIRTDKF-----GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
..|++||.|.++.|+.+.. +.++|++||+|.+.++|.+|+ .|||..+.||.|.|.+..
T Consensus 148 ~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 148 EECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 6789999999999986542 489999999999999999999 999999999999999874
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=6.3e-09 Score=69.87 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=47.2
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
+.|.+||.|..++|+.++ +||+|.+.++|.+||.||+..|+||.|+|++..
T Consensus 43 ~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 43 QTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 778899999999999883 999999999999999999999999999998753
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=7e-07 Score=62.92 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=53.6
Q ss_pred CCCCCEEEEcC------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcC-HHHHHHHH-hc--CCceeCCeEeE
Q 029897 64 EVDSRSVFVGN------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQ-SEAVQEAL-HL--NESELHGRQLK 127 (185)
Q Consensus 64 ~~~~~~vfVgn------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~-~~~a~~al-~l--~~~~i~gr~i~ 127 (185)
-..++.|||+| .+|++||.|..|.++.+. -.|||.|.+ ..+|..|+ .| ++..|.+..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35688999998 789999999999998874 269999999 89999999 88 47788998888
Q ss_pred EEec
Q 029897 128 VTVK 131 (185)
Q Consensus 128 V~~a 131 (185)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=8.5e-05 Score=50.98 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=45.0
Q ss_pred cCccCC-----CceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 75 QHFQSC-----GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 75 ~~F~~~-----G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.+.+.+ |.|..|.|+.| .+-|+|+|.+...|-+|. .|+|.+|.||+|+|.-
T Consensus 40 ~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 40 QFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred HHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 555666 99999999888 578999999999999998 9999999999999863
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.66 E-value=0.0065 Score=42.24 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=49.9
Q ss_pred CCCEEEEcC----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCC-eEeEEEec
Q 029897 66 DSRSVFVGN----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG-RQLKVTVK 131 (185)
Q Consensus 66 ~~~~vfVgn----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~g-r~i~V~~a 131 (185)
..+-|-|-+ .+|++||.|.+..... ...+-.|.|.+..+|++||..||..|++ -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 345677777 9999999999877622 3568999999999999999999999985 67777765
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.0064 Score=41.25 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=51.0
Q ss_pred CEEEEcC----------------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEe
Q 029897 68 RSVFVGN----------------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 130 (185)
Q Consensus 68 ~~vfVgn----------------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~ 130 (185)
.+|+|.| .+|..|+.+......+. -.=..|.|.+.++|.+|- .|++..|.|+.|+|-+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 4788888 77888998877766543 334589999999999999 9999999999999998
Q ss_pred cCCC
Q 029897 131 KRTN 134 (185)
Q Consensus 131 a~~~ 134 (185)
+.+.
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8643
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.97 E-value=0.0055 Score=44.01 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=27.1
Q ss_pred EEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCC
Q 029897 85 RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE 118 (185)
Q Consensus 85 ~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~ 118 (185)
.++|+.+.. .++|||||+|.+.++|++|| .+++
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcc
Confidence 456666653 68999999999999999999 7664
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.37 E-value=0.011 Score=41.70 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=43.7
Q ss_pred cCccCCCceeE-EEEeeCC---------C----C-CCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEEecC
Q 029897 75 QHFQSCGTVNR-VTIRTDK---------F----G-QPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 132 (185)
Q Consensus 75 ~~F~~~G~i~~-~~i~~~~---------~----~-~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~~a~ 132 (185)
+.|++||.|.. +.+.... . . .....-.|+|.+..+|.+||..||..|+|..|-|.+..
T Consensus 25 ~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 25 AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 89999999865 2221100 0 0 13567799999999999999999999999988887764
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.86 E-value=0.0081 Score=42.86 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=35.4
Q ss_pred CCCceEEEEEEcCHHHHHHHH-hc-CCceeCCeEeEEEecCC
Q 029897 94 GQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTVKRT 133 (185)
Q Consensus 94 ~~~~g~afV~f~~~~~a~~al-~l-~~~~i~gr~i~V~~a~~ 133 (185)
...+|+++|+|.+.+.|++|+ .| |+..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 457999999999999999999 89 9999999 999998754
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.19 E-value=0.46 Score=32.01 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCCEEEEcC-----------cCccC-----CCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhcCCceeCCeEeEEE
Q 029897 66 DSRSVFVGN-----------QHFQS-----CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 129 (185)
Q Consensus 66 ~~~~vfVgn-----------~~F~~-----~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l~~~~i~gr~i~V~ 129 (185)
-.++|.|.| .+|+. =|.|..+.... +-|+|+|.+...|++.|+-..+.|.+.+|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 456888998 66765 25888887642 57899999999999999777888999999998
Q ss_pred ecCCC
Q 029897 130 VKRTN 134 (185)
Q Consensus 130 ~a~~~ 134 (185)
..-+.
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 75443
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.26 E-value=0.59 Score=31.15 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=29.6
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hc
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL 116 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l 116 (185)
.+|+.||.|. |+.+-|- -|||.|.+++.|..|| .+
T Consensus 34 ~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 34 QLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred HHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 8999999665 7777663 7999999999999999 55
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.65 E-value=0.15 Score=43.39 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=33.7
Q ss_pred CEEEEcC----------cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHhc
Q 029897 68 RSVFVGN----------QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 116 (185)
Q Consensus 68 ~~vfVgn----------~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al~l 116 (185)
++|||.- .+|++||.|.++.+-.++ .-|+.|+|.+.+++..++..
T Consensus 54 rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIHCPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEEECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 4688864 899999999998776542 47999999999999988733
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=82.24 E-value=0.71 Score=30.86 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=29.8
Q ss_pred cCccCCCceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcC
Q 029897 75 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN 117 (185)
Q Consensus 75 ~~F~~~G~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~ 117 (185)
.+|+.||.|. |+.+-|- -|||.|.+++.|..|| .+.
T Consensus 24 ~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 24 QLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHTTTSEEEE-EEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred HHHhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 8899999554 7777764 7999999999999999 553
No 219
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.18 E-value=5.9 Score=24.30 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=29.4
Q ss_pred ceeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCceeCCeEeEEEecC
Q 029897 82 TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 132 (185)
Q Consensus 82 ~i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~~i~gr~i~V~~a~ 132 (185)
.|-.|+|. -.|.||+... ..+..++ .|++..+.|+.++|..++
T Consensus 32 ~IG~I~i~-------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIM-------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEEC-------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEEe-------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45556663 3489999875 4566677 899999999999988764
No 220
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=47.91 E-value=6.3 Score=19.87 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 029897 177 MPMRYSPY 184 (185)
Q Consensus 177 ~~~~~~py 184 (185)
+++||.||
T Consensus 17 ggnrfepY 24 (30)
T 2ot8_C 17 GGNRFEPY 24 (30)
T ss_pred CCcccccc
Confidence 44567776
No 221
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=43.82 E-value=9.1 Score=20.95 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=7.1
Q ss_pred ChhhHHHHHHHHHH
Q 029897 14 KQVELDDMKIRLKE 27 (185)
Q Consensus 14 ~~~e~~~~~~~~~~ 27 (185)
++++++.|+.++..
T Consensus 24 eEedi~~MqsRLaA 37 (40)
T 2xze_Q 24 EEEALEAMQSRLAT 37 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33445555555543
No 222
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=20.96 E-value=1.7e+02 Score=18.62 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred CceEEEEEEcCHHHHHHHH-hcCCceeC
Q 029897 96 PKGYAYVEFLQSEAVQEAL-HLNESELH 122 (185)
Q Consensus 96 ~~g~afV~f~~~~~a~~al-~l~~~~i~ 122 (185)
.-.-|+|.|.+.+++..-. .++|+.+.
T Consensus 44 ~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 44 MYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4567999999999998888 89999874
No 223
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.55 E-value=1.7e+02 Score=18.44 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=24.5
Q ss_pred eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH-hcCCc
Q 029897 83 VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNES 119 (185)
Q Consensus 83 i~~~~i~~~~~~~~~g~afV~f~~~~~a~~al-~l~~~ 119 (185)
|..+.++.. ..||-||++...++...+| .+.+.
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 445555442 7999999999998888888 66654
No 224
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=59 Score=19.73 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=13.9
Q ss_pred CCceeEEEEeeCCCCCCceEEEEEEcC
Q 029897 80 CGTVNRVTIRTDKFGQPKGYAYVEFLQ 106 (185)
Q Consensus 80 ~G~i~~~~i~~~~~~~~~g~afV~f~~ 106 (185)
.|.|..|.. .+..|||.|.|
T Consensus 27 lGtV~kV~~-------~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDS-------AREVCLVQFED 46 (68)
T ss_dssp EEEEEEEET-------TTTEEEEEETT
T ss_pred EeEEEEEec-------CCcEEEEEEcc
Confidence 356665543 47799999986
Done!