BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029898
         (185 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1
          Length = 763

 Score = 32.7 bits (73), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 41  TQGWDSETVVDYRIDEDEFHKI--SLMECDFFIRKPPDPDNDVYDFREMY 88
           +Q WD+   +   +D D  H+I  +LM+   FI+K    DN   DF+ MY
Sbjct: 416 SQEWDTGFSIQALLDSDLTHEIGPTLMKGHDFIKKSQVKDNPSGDFKSMY 465


>sp|A8F0B3|DCUP_RICCK Uroporphyrinogen decarboxylase OS=Rickettsia canadensis (strain
           McKiel) GN=hemE PE=3 SV=1
          Length = 339

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 15/93 (16%)

Query: 35  SKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVY---DFREMYVTP 91
           SK FVY     S+ ++++ ID+  +H I+ +E    I K  D  + V    +F E  + P
Sbjct: 159 SKKFVYENKALSKELLNFLIDKTTYHLINQVESGANILKLFDSCSGVLAEEEFTEFVIEP 218

Query: 92  ------------PDTDIYAIPKVLAPMPQKYIR 112
                       P T I A PK    + +K+I+
Sbjct: 219 TKKIILKVKEVLPKTPIIAFPKGAGLLYEKFIK 251


>sp|Q64MU6|GLAA_BACFR Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46)
           GN=glaA PE=3 SV=1
          Length = 605

 Score = 32.3 bits (72), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 12/47 (25%)

Query: 7   EELDNKKDYDVEYDPLVAGGDEDITMVDSKSFVYTQGWDSETVVDYR 53
           E   + K++ +EYDP            D++SF Y+QGW++ +  D R
Sbjct: 182 EGWRSNKNHCIEYDP------------DTESFTYSQGWNTLSASDAR 216


>sp|Q92179|CHST3_CHICK Carbohydrate sulfotransferase 3 OS=Gallus gallus GN=CHST3 PE=1 SV=1
          Length = 458

 Score = 30.8 bits (68), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 95  DIYAIPKVLAPMPQKYIRCAVSDYG-CYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRN 153
           D+Y +   ++P P++++  A+   G  +++ E P+  P          + KVF   H +N
Sbjct: 179 DLYILESFISPAPEEHLTAALFRRGSSHSLCEEPVCTP---------SLKKVFEKYHCKN 229

Query: 154 RRLGDPEFVLDFE 166
           RR G     L  E
Sbjct: 230 RRCGPLNITLAAE 242


>sp|Q8K1S5|KLF11_MOUSE Krueppel-like factor 11 OS=Mus musculus GN=Klf11 PE=2 SV=3
          Length = 502

 Score = 30.4 bits (67), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 75  PDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDP 134
           PD   D + F  + +TPP +     P    P+P +     V+  GC     PP  A   P
Sbjct: 86  PDLPKDFHSFSTLCITPPQSPELTEPSTGTPVPSQV----VNSKGCMVTALPPSPA-GGP 140

Query: 135 MYKSERE 141
              S+RE
Sbjct: 141 RTLSKRE 147


>sp|B1MY11|SYL_LEUCK Leucine--tRNA ligase OS=Leuconostoc citreum (strain KM20) GN=leuS
           PE=3 SV=1
          Length = 803

 Score = 30.4 bits (67), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 13  KDYDVEYDPLVAGG-DEDITMVDSKSFV---YTQGWDSETVVDYRIDEDEFHKISLMECD 68
           K +D+   P++AGG ++D+        +   +  G D  T +D  ID  E H+    + +
Sbjct: 350 KKFDLAIKPVIAGGENDDVAYTGDGVHINSDFLDGLDKATAIDQAIDWLEAHQAGHAQTN 409

Query: 69  FFIR 72
           F +R
Sbjct: 410 FRLR 413


>sp|P56945|BCAR1_HUMAN Breast cancer anti-estrogen resistance protein 1 OS=Homo sapiens
           GN=BCAR1 PE=1 SV=2
          Length = 870

 Score = 30.0 bits (66), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 70  FIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKY 110
           ++ +   P+ D YD     + P   DIY +P V   +P +Y
Sbjct: 222 YVYEAAQPEQDEYDIPRHLLAPGPQDIYDVPPVRGLLPSQY 262


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.140    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,987,548
Number of Sequences: 539616
Number of extensions: 3694743
Number of successful extensions: 7497
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7485
Number of HSP's gapped (non-prelim): 30
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)