Query 029898
Match_columns 185
No_of_seqs 12 out of 14
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 08:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l1s_A Uncharacterized protein 18.6 67 0.0023 22.7 2.3 62 92-182 3-75 (83)
2 3hvz_A Uncharacterized protein 17.8 59 0.002 22.2 1.8 23 85-107 6-28 (78)
3 1oa8_A Ataxin-1; RNA binding, 12.6 34 0.0012 26.4 -0.6 19 37-55 90-112 (133)
4 2fl7_A Regulatory protein SIR3 12.3 43 0.0015 27.9 -0.2 34 54-87 156-195 (232)
5 4hyl_A Stage II sporulation pr 10.7 1.1E+02 0.0037 20.0 1.5 15 160-174 44-58 (117)
6 3nol_A Glutamine cyclotransfer 10.3 1.3E+02 0.0045 24.5 2.1 15 166-180 192-206 (262)
7 3u35_A General stress protein; 10.0 1.2E+02 0.0041 22.9 1.7 43 141-184 118-163 (182)
8 1ejp_A Syndecan-4; symmetric-p 9.2 1.1E+02 0.0038 18.6 1.0 14 114-127 3-16 (28)
9 2l8s_A Integrin alpha-1; trans 9.0 83 0.0028 21.2 0.4 19 63-81 29-47 (54)
10 3vyw_A MNMC2; tRNA wobble urid 8.9 2E+02 0.0069 24.2 2.8 86 48-155 221-308 (308)
No 1
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=18.58 E-value=67 Score=22.71 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=38.5
Q ss_pred CCCceeecccccCC---------Cchhhh--hhhhccCccccccCCCCCCCCCccchhhHHhhhheeehhcccccCCCCc
Q 029898 92 PDTDIYAIPKVLAP---------MPQKYI--RCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPE 160 (185)
Q Consensus 92 PdTDvYSIPrVl~p---------MPqky~--rC~~s~yg~y~vtePPid~pRdP~yk~E~ei~kVfl~khyrnrr~~dp~ 160 (185)
...|-|.+|+..++ ||..|. +=...|+-.|++..||.. |+
T Consensus 3 ~~~~~y~~~~~~~~~~~w~~G~~lP~~yr~~~Y~V~Dw~~~~L~~PPrG---------------------y~-------- 53 (83)
T 2l1s_A 3 AGIDQYALKEFTADFTQFHIGDTVPAMYLTPEYNIKQWQQRNLPAPDAG---------------------SH-------- 53 (83)
T ss_dssp CSSGGGBCSEEEETTEEEETTCBCCGGGTSGGGEECCCTTSSCCCCCTT---------------------EE--------
T ss_pred ccccccccceeeccCcccccCCCCCHHHcCCceEcCCHhHCCCCccCCC---------------------CE--------
Confidence 34566778887777 777765 334566666776655532 22
Q ss_pred ceeecceEEEeecCcceeeeee
Q 029898 161 FVLDFEEIYVIDSKTKSITRAK 182 (185)
Q Consensus 161 fvldfeeiyvids~tksitrak 182 (185)
+|--=..+.+|+..|+.|..+-
T Consensus 54 Wvrv~~dyvLVai~tG~I~~ii 75 (83)
T 2l1s_A 54 WTYMGGNYVLITDTEGKILKVY 75 (83)
T ss_dssp EEECSSEEEEEETTTCBEEEEE
T ss_pred EEEECCcEEEEECCCCeEEEEE
Confidence 2322345566899999998763
No 2
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=17.78 E-value=59 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=18.6
Q ss_pred eeeeecCCCCceeecccccCCCc
Q 029898 85 REMYVTPPDTDIYAIPKVLAPMP 107 (185)
Q Consensus 85 REMYVTpPdTDvYSIPrVl~pMP 107 (185)
.||||+-|+.+++..|+---++-
T Consensus 6 ~~i~v~tP~G~~~~lp~GaT~~D 28 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPIGSTVID 28 (78)
T ss_dssp CEEEEECTTSCEEEEETTCBHHH
T ss_pred ceEEEECCCCCEEEecCCCCHHH
Confidence 58999999999999998544443
No 3
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=12.59 E-value=34 Score=26.43 Aligned_cols=19 Identities=37% Similarity=0.721 Sum_probs=13.6
Q ss_pred ceeeecccCc----ceeEEeecC
Q 029898 37 SFVYTQGWDS----ETVVDYRID 55 (185)
Q Consensus 37 sFvstqg~~s----~~vVdY~in 55 (185)
=||-.|||+| -|++-|.|+
T Consensus 90 FFV~gqGWsSc~P~~T~~~ygL~ 112 (133)
T 1oa8_A 90 FFVFGQGWSSCCPERTSQLFDLP 112 (133)
T ss_dssp EEETTTEEEESCHHHHHHHHCCC
T ss_pred cEEcCCcccccCHhHhhHhhCCc
Confidence 4999999986 455555554
No 4
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=12.29 E-value=43 Score=27.91 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=23.0
Q ss_pred cCcccccee---ecccccccccCCCCCCCC---cccceee
Q 029898 54 IDEDEFHKI---SLMECDFFIRKPPDPDND---VYDFREM 87 (185)
Q Consensus 54 inEdEFHki---sl~dcdffirk~PDpD~d---VyDFREM 87 (185)
.+++||-.| +.-+++||.|..=||+.. -+||+++
T Consensus 156 ls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~ 195 (232)
T 2fl7_A 156 LPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDIFQI 195 (232)
T ss_dssp ECTTTC-------CTTTEEEEEEECCTTSCSCEECCHHHH
T ss_pred ccHHHHHHhcccccCCceEEEEEEEcCCcCccccccHHHH
Confidence 478888888 567899999999999854 4566554
No 5
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=10.70 E-value=1.1e+02 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=13.9
Q ss_pred cceeecceEEEeecC
Q 029898 160 EFVLDFEEIYVIDSK 174 (185)
Q Consensus 160 ~fvldfeeiyvids~ 174 (185)
..+|||.++-.|||.
T Consensus 44 ~vvlDls~v~~iDss 58 (117)
T 4hyl_A 44 KMILDLREVSYMSSA 58 (117)
T ss_dssp EEEEEEEEEEEECHH
T ss_pred eEEEECCCCcEEcHH
Confidence 899999999999985
No 6
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=10.30 E-value=1.3e+02 Score=24.50 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.6
Q ss_pred ceEEEeecCcceeee
Q 029898 166 EEIYVIDSKTKSITR 180 (185)
Q Consensus 166 eeiyvids~tksitr 180 (185)
.+|+|||.+|+.+++
T Consensus 192 ~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 192 NKIVRIDPETGKVTG 206 (262)
T ss_dssp SEEEEECTTTCBEEE
T ss_pred CeEEEEECCCCcEEE
Confidence 489999999998764
No 7
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*
Probab=10.00 E-value=1.2e+02 Score=22.86 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=31.4
Q ss_pred HhhhheeehhcccccCCCCcce---eecceEEEeecCcceeeeeeec
Q 029898 141 EIHKVFLVKHYRNRRLGDPEFV---LDFEEIYVIDSKTKSITRAKVL 184 (185)
Q Consensus 141 ei~kVfl~khyrnrr~~dp~fv---ldfeeiyvids~tksitrakv~ 184 (185)
++|.-++.+.|..- .+||+++ +.-+++..-|+..+.|.+||.+
T Consensus 118 ~lw~~~~~~~~p~g-~~dP~~~vlrv~p~~~e~Wd~~~~~~~~~~~~ 163 (182)
T 3u35_A 118 RLWNPYVAAWYEGG-KTDPNLALLRLDADHAQIWLNESSLLAGIKVL 163 (182)
T ss_dssp HHCCHHHHTTCTTG-GGCTTEEEEEEEEEEEEEEEEEEEECCCEEEE
T ss_pred HHHHHHHHHhccCC-CCCCCEEEEEEEeCEEEEEeCCCCceeeeeee
Confidence 45555666666433 4688875 5778899999999999998865
No 8
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=9.25 E-value=1.1e+02 Score=18.63 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.0
Q ss_pred hhccCccccccCCC
Q 029898 114 AVSDYGCYNVTEPP 127 (185)
Q Consensus 114 ~~s~yg~y~vtePP 127 (185)
-++|-|.|.+.|||
T Consensus 3 rKKDEGSY~Lde~p 16 (28)
T 1ejp_A 3 KKKDEGSYDLGKKP 16 (28)
T ss_dssp SCCCCCCCCCCSCC
T ss_pred ccccccccccCCCc
Confidence 46789999999986
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.00 E-value=83 Score=21.24 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.0
Q ss_pred ecccccccccCCCCCCCCc
Q 029898 63 SLMECDFFIRKPPDPDNDV 81 (185)
Q Consensus 63 sl~dcdffirk~PDpD~dV 81 (185)
.|..|-||=||-|....|.
T Consensus 29 ~LwK~GFFKR~~~~~~~~~ 47 (54)
T 2l8s_A 29 ALWKIGFFKRPLKKKMEKL 47 (54)
T ss_dssp HHHHHHHTTSCCSCCCCC-
T ss_pred HHHHcCcccCCCcchhhHH
Confidence 4678999999998877664
No 10
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=8.93 E-value=2e+02 Score=24.19 Aligned_cols=86 Identities=24% Similarity=0.260 Sum_probs=54.4
Q ss_pred eeEEeecCccccceeecccccccccCCCCCCCCcccceeeeecCCCCceeecccccCCCchhhhhhhh-ccCccccccCC
Q 029898 48 TVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAV-SDYGCYNVTEP 126 (185)
Q Consensus 48 ~vVdY~inEdEFHkisl~dcdffirk~PDpD~dVyDFREMYVTpPdTDvYSIPrVl~pMPqky~rC~~-s~yg~y~vteP 126 (185)
+.+.|... -+=+=.|..+-|-+.|+|-+-. =|||=+-. .|.-+.|+++.-.+=.. +..|
T Consensus 221 ~laTYtaa--g~VRR~L~~aGF~V~k~~G~g~----KReml~A~-------~~~~~~pl~~~~~~~~~~s~aa------- 280 (308)
T 3vyw_A 221 YWVSYSSS--LSVRKSLLTLGFKVGSSREIGR----KRKGTVAS-------LKAPVPPMEENEVRKLVLSPFA------- 280 (308)
T ss_dssp EEEESCCC--HHHHHHHHHTTCEEEEEECC-------CEEEEEE-------SSSCCCCCCHHHHHHHHHCTTC-------
T ss_pred EEEEEeCc--HHHHHHHHHCCCEEEecCCCCC----CCceeEEe-------cCCCCCCCChHHHHHHhcCCCe-------
Confidence 44555432 2345578999999999997754 38998762 12224567766544321 2211
Q ss_pred CCCCCCCcc-chhhHHhhhheeehhccccc
Q 029898 127 PIDAPRDPM-YKSEREIHKVFLVKHYRNRR 155 (185)
Q Consensus 127 Pid~pRdP~-yk~E~ei~kVfl~khyrnrr 155 (185)
-+=|||- -.+..+|++-+-+|-|||-|
T Consensus 281 --iPyRDp~l~~~~~~Il~~~~~~~~~~~~ 308 (308)
T 3vyw_A 281 --VPMRDEKLDKEPLEILIDYLLKVYKISR 308 (308)
T ss_dssp --CCCCCSSSCCCHHHHHHHHHHHHTTCCC
T ss_pred --eeCcCCCCCCCHHHHHHHHhhhhcccCC
Confidence 2457775 55778999999999999876
Done!