Query 029898
Match_columns 185
No_of_seqs 12 out of 14
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 08:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1npea_ b.68.5.1 (A:) Nidogen 11.7 72 0.0053 22.6 2.8 23 160-182 171-195 (263)
2 d1h4xa_ c.13.2.1 (A:) Anti-sig 11.0 52 0.0038 20.2 1.6 18 158-175 41-58 (111)
3 d1v43a2 b.40.6.3 (A:304-373) H 10.3 61 0.0045 18.8 1.7 18 160-177 50-67 (70)
4 d1ijqa1 b.68.5.1 (A:377-642) L 9.5 89 0.0065 21.9 2.6 19 165-183 41-59 (266)
5 d1mgpa_ c.119.1.1 (A:) Hypothe 9.2 55 0.004 24.0 1.4 13 167-179 113-125 (285)
6 d1ud9a1 d.131.1.2 (A:1-119) Pr 8.5 1.1E+02 0.0084 19.7 2.7 33 29-61 24-58 (119)
7 d1nr3a_ d.236.1.1 (A:) DNA-bin 8.4 35 0.0025 24.4 -0.1 22 88-115 51-73 (122)
8 d1ooha_ a.39.2.1 (A:) Odorant 7.8 42 0.0031 21.3 0.1 15 108-122 47-61 (126)
9 d1rwza1 d.131.1.2 (A:1-122) Pr 7.7 1.3E+02 0.0093 19.5 2.7 33 29-61 24-58 (122)
10 g1ii8.1 c.37.1.12 (A:,B:) Rad5 7.4 1.1E+02 0.0081 19.9 2.2 26 158-184 343-368 (369)
No 1
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.70 E-value=72 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.4
Q ss_pred cceeecce--EEEeecCcceeeeee
Q 029898 160 EFVLDFEE--IYVIDSKTKSITRAK 182 (185)
Q Consensus 160 ~fvldfee--iyvids~tksitrak 182 (185)
...+|.+. +|+.|+.+++|.++.
T Consensus 171 glaiD~~~~~lYw~d~~~~~I~~~~ 195 (263)
T d1npea_ 171 GLTFDAFSSQLCWVDAGTHRAECLN 195 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEeecCcEEEEEeCCCCEEEEEE
Confidence 45677554 999999999998875
No 2
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=11.01 E-value=52 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.9
Q ss_pred CCcceeecceEEEeecCc
Q 029898 158 DPEFVLDFEEIYVIDSKT 175 (185)
Q Consensus 158 dp~fvldfeeiyvids~t 175 (185)
...++|||.++-.|||..
T Consensus 41 ~~~vvlD~s~v~~iDssg 58 (111)
T d1h4xa_ 41 VTTIIWNFERLSFMDSSG 58 (111)
T ss_dssp CSEEEEEEEEEEEECTHH
T ss_pred CcEEEEEEECCcccCchH
Confidence 346899999999999863
No 3
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.27 E-value=61 Score=18.82 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.2
Q ss_pred cceeecceEEEeecCcce
Q 029898 160 EFVLDFEEIYVIDSKTKS 177 (185)
Q Consensus 160 ~fvldfeeiyvids~tks 177 (185)
.|-+|.+.+++.|..|+.
T Consensus 50 ~l~~d~~~~~lFD~~tg~ 67 (70)
T d1v43a2 50 KVIMDLDMIHVFDKDTEK 67 (70)
T ss_dssp EEEEEGGGCEEEETTTCB
T ss_pred EEEECcccEEEEcchhcc
Confidence 466788899999988763
No 4
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.48 E-value=89 Score=21.93 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.2
Q ss_pred cceEEEeecCcceeeeeee
Q 029898 165 FEEIYVIDSKTKSITRAKV 183 (185)
Q Consensus 165 feeiyvids~tksitrakv 183 (185)
=+.||++|..+++|.|+.+
T Consensus 41 ~~~lYw~D~~~~~I~~~~l 59 (266)
T d1ijqa1 41 SNRIYWSDLSQRMICSTQL 59 (266)
T ss_dssp TTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEe
Confidence 3568999999999988753
No 5
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]}
Probab=9.19 E-value=55 Score=24.05 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=11.1
Q ss_pred eEEEeecCcceee
Q 029898 167 EIYVIDSKTKSIT 179 (185)
Q Consensus 167 eiyvids~tksit 179 (185)
+|+||||+|-|+.
T Consensus 113 ~v~ViDS~~~s~g 125 (285)
T d1mgpa_ 113 PVYVVDTLLASGA 125 (285)
T ss_dssp CEEEEECSCCGGG
T ss_pred cEEEEecccchhh
Confidence 6999999998764
No 6
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=8.49 E-value=1.1e+02 Score=19.70 Aligned_cols=33 Identities=6% Similarity=0.113 Sum_probs=25.3
Q ss_pred ceeEeeccceeeecccCccee--EEeecCccccce
Q 029898 29 DITMVDSKSFVYTQGWDSETV--VDYRIDEDEFHK 61 (185)
Q Consensus 29 ~ia~v~s~sFvstqg~~s~~v--VdY~inEdEFHk 61 (185)
++.+.-++.=++.|+.++..| |+..++.+-|++
T Consensus 24 e~~~~~~~~Gi~iq~mD~s~v~lv~l~L~~~~F~~ 58 (119)
T d1ud9a1 24 EALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKE 58 (119)
T ss_dssp EEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSE
T ss_pred eEEEEEccCeEEEEEeCCCCEEEEEEEeCHHHCcc
Confidence 455556666788888888877 888888888887
No 7
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.42 E-value=35 Score=24.38 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=18.0
Q ss_pred eec-CCCCceeecccccCCCchhhhhhhh
Q 029898 88 YVT-PPDTDIYAIPKVLAPMPQKYIRCAV 115 (185)
Q Consensus 88 YVT-pPdTDvYSIPrVl~pMPqky~rC~~ 115 (185)
.|+ |++||+|.||+ +-|-.|-+
T Consensus 51 ~i~i~~GtDl~~iP~------~v~~~aD~ 73 (122)
T d1nr3a_ 51 RILCRRGDTLDEIIK------RLLEESNK 73 (122)
T ss_dssp EEEECCGGGHHHHHH------HHHHHHHH
T ss_pred EEEECCCCcHHHhHH------HHHHHHHH
Confidence 344 99999999999 77888844
No 8
>d1ooha_ a.39.2.1 (A:) Odorant binding protein LUSH {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.79 E-value=42 Score=21.35 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.4
Q ss_pred hhhhhhhhccCcccc
Q 029898 108 QKYIRCAVSDYGCYN 122 (185)
Q Consensus 108 qky~rC~~s~yg~y~ 122 (185)
+||++|+....|-++
T Consensus 47 kC~~~C~~~k~g~~d 61 (126)
T d1ooha_ 47 MCYTKCVSLMAGTVN 61 (126)
T ss_dssp HHHHHHHHHHHTSBC
T ss_pred CCHHHHHHHHhCCCC
Confidence 899999999888875
No 9
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.68 E-value=1.3e+02 Score=19.54 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=25.3
Q ss_pred ceeEeeccceeeecccCccee--EEeecCccccce
Q 029898 29 DITMVDSKSFVYTQGWDSETV--VDYRIDEDEFHK 61 (185)
Q Consensus 29 ~ia~v~s~sFvstqg~~s~~v--VdY~inEdEFHk 61 (185)
+..+.-+..=++.|+.++..| |+.++..+-|..
T Consensus 24 e~~~~~~~~Gi~iq~mD~s~v~Lv~l~L~~~~F~~ 58 (122)
T d1rwza1 24 EARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEV 58 (122)
T ss_dssp EEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSE
T ss_pred eEEEEEccCeEEEEEeCCCcEEEEEEEECcccCeE
Confidence 445556677788888888877 888888888876
No 10
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=7.40 E-value=1.1e+02 Score=19.86 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=19.3
Q ss_pred CCcceeecceEEEeecCcceeeeeeec
Q 029898 158 DPEFVLDFEEIYVIDSKTKSITRAKVL 184 (185)
Q Consensus 158 dp~fvldfeeiyvids~tksitrakv~ 184 (185)
+|.++-.++.|++|....+ .+|.+|+
T Consensus 343 s~~~~~~~d~~~~v~~~~g-~s~v~~~ 368 (369)
T g1ii8.1 343 DEELKDAADHVIRISLENG-SSKVEVV 368 (369)
T ss_dssp CGGGGGTSSEEEEEEECSS-SEEEEEC
T ss_pred hHHHHHhCCEEEEEEEeCC-EEEEEEe
Confidence 5776666889999988766 6777764
Done!