BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029900
MALHCLSSSSCLTIQSKFKTLSLNNNSSSHSSFATFKSLCFSNKLSHNVFSTGSLTMSPI
QRPMRHSVVCEAATKKKADSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKP
DAQPEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPTP
AETVQ

High Scoring Gene Products

Symbol, full name Information P value
PRPS20
AT3G15190 		protein from Arabidopsis thaliana 1.8e-30

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029900
        (185 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083661 - symbol:PRPS20 "plastid ribosomal pro...   336  1.8e-30   1


>TAIR|locus:2083661 [details] [associations]
            symbol:PRPS20 "plastid ribosomal protein S20"
            species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003735 "structural constituent of ribosome"
            evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0015995
            "chlorophyll biosynthetic process" evidence=RCA] InterPro:IPR002583
            Pfam:PF01649 ProDom:PD004231 GO:GO:0009570 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0016020 GO:GO:0006412 GO:GO:0009941
            GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AP001299
            UniGene:At.21189 EMBL:AF361807 EMBL:AF370555 EMBL:AY055105
            EMBL:AY072522 EMBL:AY086352 IPI:IPI00534404 RefSeq:NP_188137.1
            ProteinModelPortal:Q9ASV6 SMR:Q9ASV6 STRING:Q9ASV6 PaxDb:Q9ASV6
            PRIDE:Q9ASV6 ProMEX:Q9ASV6 EnsemblPlants:AT3G15190.1 GeneID:820750
            KEGG:ath:AT3G15190 GeneFarm:48 TAIR:At3g15190 eggNOG:NOG259332
            HOGENOM:HOG000005766 InParanoid:Q9ASV6 KO:K02968 OMA:EIHHGWY
            PhylomeDB:Q9ASV6 ProtClustDB:CLSN2685098 Genevestigator:Q9ASV6
            GermOnline:AT3G15190 Gene3D:1.20.58.110 SUPFAM:SSF46992
            TIGRFAMs:TIGR00029 Uniprot:Q9ASV6
        Length = 202

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/143 (50%), Positives = 86/143 (60%)

Query:    41 FSNKLSHNV-FSTGSLTMSPIQRPMRHSVVCEXXX-XXXXXXXXXXXXXXXXXXIYNKSR 98
             FS  +S  V FSTG+L    +Q+PMR  +VCE                      +YNKS+
Sbjct:    51 FSQSVSQCVAFSTGNLW---VQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSK 107

Query:    99 KSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTGXXX 158
             KSE +TRMKKVLEAL+GL+KK DAQ +E++ VEKLI EAYS IDKAVKV  LH+NTG   
Sbjct:   108 KSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARR 167

Query:   159 XXXXXXXXXXVEIHHGWYTPTPA 181
                       VEIHHGWY P  A
Sbjct:   168 KSRLARRKKAVEIHHGWYVPDAA 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.129   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       127   0.00091  102 3  11 22  0.39    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  125 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.00u 0.17s 12.17t   Elapsed:  00:00:01
  Total cpu time:  12.00u 0.17s 12.17t   Elapsed:  00:00:01
  Start:  Tue May 21 01:20:31 2013   End:  Tue May 21 01:20:32 2013

Back to top