BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029900
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASV6|RR20_ARATH 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana
GN=RPS20 PE=1 SV=1
Length = 202
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/199 (58%), Positives = 137/199 (68%), Gaps = 22/199 (11%)
Query: 3 LHCLSSSSCLTIQSKFKTLSLNN-----------NSSSHSSFATFKSLCFSNKLSHNVFS 51
+ CLSS C T++S+FK LSL N S+ + + FS
Sbjct: 5 VQCLSS--CATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFS 62
Query: 52 TGSLTMSPIQRPMRHSVVCEAAT-KKKADSAAKRARQAEKRRIYNKSRKSEVKTRMKKVL 110
TG+L +Q+PMR +VCEAA KKADSAAKRARQAEKRR+YNKS+KSE +TRMKKVL
Sbjct: 63 TGNLW---VQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVL 119
Query: 111 EALDGLRKKPDAQPEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVE 170
EAL+GL+KK DAQ +E++ VEKLI EAYS IDKAVKV LH+NTGARRKSRLARRKKAVE
Sbjct: 120 EALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVE 179
Query: 171 IHHGWYTP-----TPAETV 184
IHHGWY P P+E V
Sbjct: 180 IHHGWYVPDAAAAAPSEAV 198
>sp|B7JWV1|RS20_CYAP8 30S ribosomal protein S20 OS=Cyanothece sp. (strain PCC 8801)
GN=rpsT PE=3 SV=1
Length = 97
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR AE+ R++NK+ KS V+T MKK EA+ P P+ + VE+ ++ AYS
Sbjct: 6 SALKRIAVAERNRLHNKAYKSAVRTLMKKYFEAVQAYGNNPT--PDNLSVVEQCMSAAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKAV 169
IDKAVK LHRN GAR+K+RLA+ K V
Sbjct: 64 KIDKAVKRHVLHRNNGARKKARLAKALKQV 93
>sp|Q3M5D2|RS20_ANAVT 30S ribosomal protein S20 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpsT PE=3 SV=2
Length = 98
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRA+ AE+ R+ NK+ KS VKT MK L A+ P PE + +A AYS
Sbjct: 7 SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPT--PESKQEAQTRLAAAYS 64
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKAVE 170
IDKAVK G LH N GAR+KSRLA + K +E
Sbjct: 65 RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95
>sp|Q8YWL3|RS20_NOSS1 30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpsT PE=3 SV=1
Length = 97
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRA+ AE+ R+ NK+ KS VKT MK L A+ P PE + +A AYS
Sbjct: 6 SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPT--PESKQEAQTRLAAAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKAVE 170
IDKAVK G LH N GAR+KSRLA + K +E
Sbjct: 64 RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94
>sp|B1WZT9|RS20_CYAA5 30S ribosomal protein S20 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpsT PE=3 SV=1
Length = 97
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR R +E+ R+ NKS KS V+T MKK L+A++ P PE V++ ++ AYS
Sbjct: 6 SALKRIRTSERNRLRNKSYKSAVRTLMKKYLQAVEEYAASPT--PENKAVVDQRMSAAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK LHRN GAR+K+RLA+
Sbjct: 64 KIDKAVKRSVLHRNNGARKKARLAK 88
>sp|Q8DJN4|RS20_THEEB 30S ribosomal protein S20 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpsT PE=3 SV=1
Length = 98
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SAAKRA+ AE+ R+ NK+ +S V+T +K L A+ P PE++ V + A+S
Sbjct: 6 SAAKRAQIAERNRLRNKAYRSAVRTLIKNYLNAISQYSTDPT--PEKLAEVHHRLNLAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK G LHRNTGARRK+RL R
Sbjct: 64 KIDKAVKRGVLHRNTGARRKARLTR 88
>sp|Q7VA27|RS20_PROMA 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpsT PE=3 SV=1
Length = 99
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 79 DSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKP--DAQPEEVLPVEKLIAE 136
+SA KR + AE+ RI N++ KS ++T MK+ EA +KP DA+ + ++ + +
Sbjct: 5 NSAKKRIQIAERNRIQNRTYKSAMRTLMKRCFEACGAYSEKPSEDAKKD----IQNSMND 60
Query: 137 AYSVIDKAVKVGTLHRNTGARRKSRL 162
A+S IDKAVK G LHRNTGA +KSRL
Sbjct: 61 AFSKIDKAVKTGVLHRNTGANQKSRL 86
>sp|B7KG02|RS20_CYAP7 30S ribosomal protein S20 OS=Cyanothece sp. (strain PCC 7424)
GN=rpsT PE=3 SV=1
Length = 97
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS VKT MKK A++ + P + ++ V++ ++ AYS
Sbjct: 6 SAIKRIQIAERNRLRNKSYKSAVKTLMKKYYAAVEDYKANPSEEAKK--AVDQAMSAAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLA 163
IDKAVK LHRN GAR+KS+LA
Sbjct: 64 KIDKAVKCRILHRNNGARKKSQLA 87
>sp|B0C2C8|RS20_ACAM1 30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC
11017) GN=rpsT PE=3 SV=1
Length = 94
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR AE+ R+ NK+ KS +KT K+ A+D + P +++ ++ ++ YS
Sbjct: 6 SAKKRILIAERNRLQNKAYKSAIKTFTKRFQAAVDDYKSNP--SDDQLAAIQNEMSVTYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKA 168
IDKAVKVG HRNTGAR+K+ LAR KA
Sbjct: 64 KIDKAVKVGVFHRNTGARKKAGLARILKA 92
>sp|P73336|RS20_SYNY3 30S ribosomal protein S20 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpsT PE=3 SV=1
Length = 97
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR AE+ R+ NKS KS +KT MKK ++++ P+ PE++ + +A A+S
Sbjct: 6 SALKRIEIAERNRLQNKSYKSAIKTLMKKTFQSVEAYASDPN--PEKLDTINTSMAAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK +H+N AR+K+RLA+
Sbjct: 64 KIDKAVKCKVIHKNNAARKKARLAK 88
>sp|Q5MZ25|RS20_SYNP6 30S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsT PE=3 SV=1
Length = 98
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NK+ KS VKT +K A D P+ + V + ++ AYS
Sbjct: 6 SAIKRVQIAERNRLRNKAYKSAVKTLVKHCFTAFDAYAADPNETARQA--VNERLSAAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK G LH NTGAR+K+RLA+
Sbjct: 64 KIDKAVKRGVLHANTGARKKARLAK 88
>sp|Q31N19|RS20_SYNE7 30S ribosomal protein S20 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsT PE=3 SV=1
Length = 98
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NK+ KS VKT +K A D P+ + V + ++ AYS
Sbjct: 6 SAIKRVQIAERNRLRNKAYKSAVKTLVKHCFTAFDAYAADPNETARQA--VNERLSAAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK G LH NTGAR+K+RLA+
Sbjct: 64 KIDKAVKRGVLHANTGARKKARLAK 88
>sp|Q3AZA6|RS20_SYNS9 30S ribosomal protein S20 OS=Synechococcus sp. (strain CC9902)
GN=rpsT PE=3 SV=1
Length = 98
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 79 DSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAY 138
+SA KR AE+ R+ N++ KS ++T MK+ A D P E V+ + EA+
Sbjct: 5 NSAKKRIEIAERNRLRNRTYKSSMRTLMKRCFSACDAYGSAPG--EEAKASVQASLREAF 62
Query: 139 SVIDKAVKVGTLHRNTGARRKSRLA 163
S IDKAVKVG LHRN GA +KSRL+
Sbjct: 63 SKIDKAVKVGVLHRNNGANQKSRLS 87
>sp|Q2JVV4|RS20_SYNJA 30S ribosomal protein S20 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpsT PE=3 SV=1
Length = 100
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NK+ K+ V+ MKKV P QPE + ++ ++ A+S
Sbjct: 6 SAIKRVKIAERNRLRNKATKAMVRALMKKVTSLSSAYAANP--QPETLQEIQAAMSAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKA K G LH+NT ARRK+RL+R
Sbjct: 64 RIDKAAKTGVLHKNTAARRKARLSR 88
>sp|B0JGK4|RS20_MICAN 30S ribosomal protein S20 OS=Microcystis aeruginosa (strain
NIES-843) GN=rpsT PE=3 SV=1
Length = 97
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + +E+ R+ NK+ KS V+T +KK L A+ P PE + ++ ++EAYS
Sbjct: 6 SALKRVQISERNRLRNKAYKSAVRTLIKKCLVAVSAYGANPS--PEGLESAQQALSEAYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK LHRN GAR+K+ LA+
Sbjct: 64 KIDKAVKRNVLHRNNGARKKAGLAK 88
>sp|A9BCH8|RS20_PROM4 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9211) GN=rpsT PE=3 SV=1
Length = 100
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 79 DSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAY 138
+SA KR + AE+ R+ N+S KS ++T MK+ L A +KP + + L ++ I EA+
Sbjct: 5 NSAKKRIQIAERNRLQNRSYKSAMRTLMKRCLTAAGSYLEKPGEEAKANL--QQNINEAF 62
Query: 139 SVIDKAVKVGTLHRNTGARRKSRL 162
S IDKAVK G LHRN GA +KSRL
Sbjct: 63 SKIDKAVKKGVLHRNNGANKKSRL 86
>sp|Q318Q5|RS20_PROM9 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9312) GN=rpsT PE=3 SV=1
Length = 97
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS V+T KK LE + +K P+ + ++++ + +A+S
Sbjct: 6 SAKKRIKIAERNRLINKSYKSTVRTLTKKTLENCEKYKKDPNDENKDLVKTS--LNKAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
+IDKAVK LH+N GA RKS++
Sbjct: 64 LIDKAVKKNVLHKNNGANRKSKI 86
>sp|A3PEX6|RS20_PROM0 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9301) GN=rpsT PE=3 SV=1
Length = 97
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS V+T KK LE + +K+P+ + + ++ + +A+S
Sbjct: 6 SAKKRIQIAERNRLINKSYKSTVRTLTKKTLENCEKYKKEPNDENKNLVTTS--LNKAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
+IDKAVK LH+N GA RKS++
Sbjct: 64 LIDKAVKKNVLHKNNGANRKSKI 86
>sp|B8HTW2|RS20_CYAP4 30S ribosomal protein S20 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpsT PE=3 SV=1
Length = 99
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR E+ R++NKS KS VKT KK +A+ P + + + ++ A+S
Sbjct: 6 SAIKRVEITERNRLHNKSYKSAVKTLTKKYFDAVAAYSASP--SNDALQAAQTSLSAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK G +HRN GAR+K+RLAR
Sbjct: 64 KIDKAVKRGVIHRNNGARKKARLAR 88
>sp|A2BT63|RS20_PROMS 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain
AS9601) GN=rpsT PE=3 SV=1
Length = 97
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS V+T KK LE + +K P+ + ++ + +A+S
Sbjct: 6 SAKKRIQIAERNRLMNKSYKSTVRTLTKKTLENCEKYKKNPNEDNKNLVKTS--LNKAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
+IDKAVK LH+N GA RKS++
Sbjct: 64 LIDKAVKKNVLHKNNGANRKSKI 86
>sp|Q1XDN4|RR20_PORYE 30S ribosomal protein S20, chloroplastic OS=Porphyra yezoensis
GN=rps20 PE=3 SV=1
Length = 95
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + +E+ R+ N+ KS VKT K+ L +D L + + V+ I++ YS
Sbjct: 6 SAIKRIKTSERNRLINRKYKSVVKTLTKRCLLNIDNL------ESDNFNDVQSSISQVYS 59
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK G H NTGAR+K+RLAR
Sbjct: 60 KIDKAVKKGAFHPNTGARKKARLAR 84
>sp|B9K7H3|RS20_THENN 30S ribosomal protein S20 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rpsT PE=3 SV=1
Length = 99
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 13/106 (12%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR R +EKRR+ NK+ K+ K R+K+V++A++ + +P+EV V +L +A +
Sbjct: 6 SAKKRVRVSEKRRLRNKAYKTFFKNRIKEVIKAIE------NGEPKEV--VLELARKAQA 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPTPAETVQ 185
IDKAV G +H+N GARRK RL +R ++ + AET Q
Sbjct: 58 AIDKAVSKGVIHKNQGARRKERLFKR-----VNEYLKSLEAAETTQ 98
>sp|B1LB18|RS20_THESQ 30S ribosomal protein S20 OS=Thermotoga sp. (strain RQ2) GN=rpsT
PE=3 SV=1
Length = 96
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 8/83 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR R +EKRR+ NK+ K+ K R+K+VL+A++ + +P+EV V +L +A +
Sbjct: 6 SAKKRVRVSEKRRLRNKAYKTFFKNRIKEVLKAIE------NKEPKEV--VLELTRKAQA 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
IDKAV G +H+N GARRK+RL
Sbjct: 58 AIDKAVSKGVIHKNQGARRKARL 80
>sp|Q9X1Y7|RS20_THEMA 30S ribosomal protein S20 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rpsT PE=3 SV=1
Length = 96
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 8/83 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR R +EKRR+ NK+ K+ K R+K+VL+A++ + +P+EV V +L +A +
Sbjct: 6 SAKKRVRVSEKRRLRNKAYKTFFKNRIKEVLKAIE------NKEPKEV--VLELTRKAQA 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
IDKAV G +H+N GARRK+RL
Sbjct: 58 AIDKAVSKGVIHKNQGARRKARL 80
>sp|Q7TU38|RS20_PROMP 30S ribosomal protein S20 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rpsT PE=3 SV=1
Length = 97
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS V+T KK L + +++P++ ++++ V + +A+S
Sbjct: 6 SAKKRIQVAERNRLVNKSYKSTVRTLTKKTLANCEKYKQEPNSDNKDLVLVS--VNQAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
+IDKAVK LH+N GA +KS++ +
Sbjct: 64 LIDKAVKKNVLHKNNGANKKSKINK 88
>sp|A2BYL3|RS20_PROM5 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9515) GN=rpsT PE=3 SV=1
Length = 97
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS VKT KK L + + P++ + ++ ++EA+S
Sbjct: 6 SAKKRIKVAERNRLVNKSYKSTVKTLTKKTLANCEKYKLDPNSDNKNLVMFS--LSEAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
+IDKAVK LH+N GA +KS++ +
Sbjct: 64 LIDKAVKKNVLHKNNGANKKSKINK 88
>sp|Q46J20|RS20_PROMT 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain
NATL2A) GN=rpsT PE=3 SV=1
Length = 98
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 79 DSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAY 138
+SA KR + AE+ R+ NK+ KS V+T MK+ A K+P E ++K A+
Sbjct: 5 NSAKKRIQIAERNRLENKNYKSTVRTLMKRCFVACGIFEKEPG--DESKADLQKTFNLAF 62
Query: 139 SVIDKAVKVGTLHRNTGARRKSRLA 163
S IDKAVK G LH+NTGA +KSRL+
Sbjct: 63 SKIDKAVKKGVLHKNTGANQKSRLS 87
>sp|A2C4N4|RS20_PROM1 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain
NATL1A) GN=rpsT PE=3 SV=1
Length = 98
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 79 DSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAY 138
+SA KR + AE+ R+ NK+ KS V+T MK+ A K+P E ++K A+
Sbjct: 5 NSAKKRIQIAERNRLENKNYKSTVRTLMKRCFVACGIFEKEPG--DESKADLQKTFNLAF 62
Query: 139 SVIDKAVKVGTLHRNTGARRKSRLA 163
S IDKAVK G LH+NTGA +KSRL+
Sbjct: 63 SKIDKAVKKGVLHKNTGANQKSRLS 87
>sp|Q3AHX3|RS20_SYNSC 30S ribosomal protein S20 OS=Synechococcus sp. (strain CC9605)
GN=rpsT PE=3 SV=1
Length = 98
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR AE+ R+ N++ KS ++T MK+ A D P E V+ + A+S
Sbjct: 6 SAKKRIEIAERNRLRNRTYKSSMRTLMKRCFAACDAYSATPG--DEAKASVQTSMRAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLA 163
IDKAVKVG LHRN GA +KSRL+
Sbjct: 64 KIDKAVKVGVLHRNNGANQKSRLS 87
>sp|A8G6Y8|RS20_PROM2 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9215) GN=rpsT PE=3 SV=1
Length = 97
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS V+T KK LE + +K+P+ ++ + +A+S
Sbjct: 6 SAKKRIQIAERNRLNNKSYKSTVRTLTKKTLENCEKYKKEPNEDNMNLVKTS--LNKAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
+IDKAVK LH+N GA +KS++ +
Sbjct: 64 LIDKAVKKNVLHKNNGANKKSKINK 88
>sp|P80380|RS20_THET8 30S ribosomal protein S20 OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=rpsT PE=1 SV=3
Length = 106
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR RQ+ KRR+ NK++KS +KT KK ++ + + EE L K++ +A S
Sbjct: 11 SALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQ------EGKAEEAL---KIMRKAES 61
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARR 165
+IDKA K TLH+N ARRKSRL R+
Sbjct: 62 LIDKAAKGSTLHKNAAARRKSRLMRK 87
>sp|A7HJB0|RS20_FERNB 30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rpsT PE=3 SV=1
Length = 95
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR R +EKRR+ NK+ K+ +K ++K VL A+ AQ + + +L +A S
Sbjct: 6 SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKA 168
IDKA K G +H+N +RRKSRLA + KA
Sbjct: 58 AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86
>sp|P62661|RS20_THET2 30S ribosomal protein S20 OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=rpsT PE=1 SV=2
Length = 106
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR RQ+ KRR+ NK++KS +KT KK ++ + + EE L K++ +A S
Sbjct: 11 SALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQ------EGKAEEAL---KIMRKAES 61
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARR 165
+IDKA K TLH+N ARRKSRL R+
Sbjct: 62 LIDKAAKGSTLHKNAAARRKSRLMRK 87
>sp|B1XHW6|RS20_SYNP2 30S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpsT PE=3 SV=1
Length = 99
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + AE+ R+ NKS KS VKT KK L+A++ + +K ++ YS
Sbjct: 6 SAIKRIQTAERNRLRNKSYKSAVKTLTKKCLQAIEQY--AAAPSADAQAEAQKYLSATYS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKAVK G H NT AR+K+RLA+
Sbjct: 64 KIDKAVKRGVYHHNTAARKKARLAK 88
>sp|A2C6S6|RS20_PROM3 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9303) GN=rpsT PE=3 SV=1
Length = 100
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
S+ KR + AE+ R+ NKS KS ++T MK+ A ++P + V+ I A+S
Sbjct: 6 SSKKRVQIAERNRLENKSYKSAMRTLMKRCFSACSNYSQQPGETAK--ANVKASIDSAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRL-ARRKKAVE 170
IDKAVK G LHRNT A +KSRL A K+A+E
Sbjct: 64 KIDKAVKRGVLHRNTAAHQKSRLSAAVKQAIE 95
>sp|P51253|RR20_PORPU 30S ribosomal protein S20, chloroplastic OS=Porphyra purpurea
GN=rps20 PE=3 SV=1
Length = 94
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + +E+ R+ N+ KS VKT K+ L ++ L + + V+ I++ YS
Sbjct: 6 SAIKRIKTSERNRLINRKYKSVVKTLTKRCLMNIENL------ENSNLNDVQLSISQVYS 59
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
IDKA+K G H NTGAR+K+RLAR
Sbjct: 60 KIDKAIKKGAFHPNTGARKKARLAR 84
>sp|Q7U8K6|RS20_SYNPX 30S ribosomal protein S20 OS=Synechococcus sp. (strain WH8102)
GN=rpsT PE=3 SV=1
Length = 98
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
+A KR AE+ R+ N++ KS ++T MK+ A + K+P + + + A+S
Sbjct: 6 AAKKRIEIAERNRLRNRTYKSALRTLMKRCFVACEAYSKEPGDAAKATVSAS--MNAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLA 163
IDKAVKVG LHRN GA +KSRL+
Sbjct: 64 KIDKAVKVGVLHRNNGAHQKSRLS 87
>sp|A5ILS5|RS20_THEP1 30S ribosomal protein S20 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rpsT PE=3 SV=1
Length = 96
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 8/83 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR R +EKRR+ NK+ K+ K R+K+VL+A++ + +P+EV V +L +A +
Sbjct: 6 SAKKRVRVSEKRRLRNKAYKTFFKNRIKEVLKAIE------NKEPKEV--VLELTRKAQA 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
IDKAV +H+N GARRK+RL
Sbjct: 58 AIDKAVSKRVIHKNQGARRKARL 80
>sp|Q7TUR7|RS20_PROMM 30S ribosomal protein S20 OS=Prochlorococcus marinus (strain MIT
9313) GN=rpsT PE=3 SV=1
Length = 100
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
S+ KR + AE+ R+ NKS KS ++T MK+ A ++P + V+ I A+S
Sbjct: 6 SSKKRVQIAERNRLENKSYKSAMRTLMKRCFSACSHYSQQPGETAK--ANVKASIDSAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRL-ARRKKAVE 170
IDKAVK G LHRNT A +KSRL A K+A+E
Sbjct: 64 KIDKAVKRGVLHRNTAAHQKSRLSAAVKQAIE 95
>sp|A1WY45|RS20_HALHL 30S ribosomal protein S20 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rpsT PE=3 SV=1
Length = 88
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRARQAE+RR+ NKSR+SE++T MKKVL+A+ K D ++ A
Sbjct: 6 SAKKRARQAEERRLRNKSRRSEMRTSMKKVLKAV----KTGDHD-----QAQQAYRGAVR 56
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
V+D++ G +H+N AR KSRL
Sbjct: 57 VLDRSANRGIIHKNKAARHKSRL 79
>sp|A5GNH5|RS20_SYNPW 30S ribosomal protein S20 OS=Synechococcus sp. (strain WH7803)
GN=rpsT PE=3 SV=1
Length = 102
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
S+ KR AE+ R+ NK+ KS ++T MK+ A + P E V+ + A+S
Sbjct: 6 SSKKRVEIAERNRLQNKAYKSSMRTLMKRCFSACEAYNATPG--DEAKTSVQASMNAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLA-RRKKAVEIHHGWYTPTPA 181
IDKAVK G LHRN GA +K+RL+ KKA++ P PA
Sbjct: 64 KIDKAVKRGVLHRNAGAHQKARLSVAVKKAID-------PAPA 99
>sp|Q7NP97|RS20_GLOVI 30S ribosomal protein S20 OS=Gloeobacter violaceus (strain PCC
7421) GN=rpsT PE=3 SV=1
Length = 102
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVL-PVEKLIAEAY 138
SA KR AE+ R N + KS +KT KK + L + P E VL V+ L+ + +
Sbjct: 6 SAIKRVDVAERNRQRNIAYKSMIKTFTKKFMTRLGEYAQSPS---EAVLTEVQALLNQTF 62
Query: 139 SVIDKAVKVGTLHRNTGARRKSRL 162
S IDKA+K G +H NTGAR+KSRL
Sbjct: 63 SRIDKAIKAGVIHTNTGARKKSRL 86
>sp|A6LNU3|RS20_THEM4 30S ribosomal protein S20 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=rpsT PE=3 SV=1
Length = 91
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA +R + +E+ R+ NK+ K+ +K +KKVL AL + K + VE+L A S
Sbjct: 6 SAKRRVKISERNRLINKAYKTRMKNSIKKVLLALSEGKTKEE--------VEQLYKIAQS 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
IDKA K+G +H+N ARRKSRL
Sbjct: 58 AIDKAAKIGAVHKNEAARRKSRL 80
>sp|B7IEV3|RS20_THEAB 30S ribosomal protein S20 OS=Thermosipho africanus (strain TCF52B)
GN=rpsT PE=3 SV=1
Length = 92
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR + +E+ R+ NK+ K+ +K +KKVL AL + + + VE+L A S
Sbjct: 6 SAKKRVKVSERNRLINKAYKTRMKNSIKKVLLALQEGKSREE--------VEQLYKVAQS 57
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
IDKA K+G +H+N +RRKSRL
Sbjct: 58 AIDKAAKIGAIHKNQASRRKSRL 80
>sp|Q0AAD4|RS20_ALHEH 30S ribosomal protein S20 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rpsT PE=3 SV=1
Length = 88
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 9/83 (10%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRARQAEKRR +N+S++S ++T +K+V+ A+ K AQ EE V A
Sbjct: 6 SAKKRARQAEKRRKHNQSQRSMMRTYIKRVVNAIKAGDK---AQAEEAYKV------AVP 56
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
VID+ G +H+N AR KSRL
Sbjct: 57 VIDRMATRGLIHKNKAARHKSRL 79
>sp|C1CVD5|RS20_DEIDV 30S ribosomal protein S20 OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=rpsT PE=3 SV=1
Length = 91
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 11/85 (12%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KR RQ+ KRR+ N+SRKS +KT K+ + A A E L + AE S
Sbjct: 7 SAQKRHRQSLKRRMLNRSRKSTIKTFTKQAVAA---------ATTGENLAAAQSKAE--S 55
Query: 140 VIDKAVKVGTLHRNTGARRKSRLAR 164
+IDKA K TLH+N AR+KSRLA+
Sbjct: 56 LIDKAAKGSTLHKNAAARKKSRLAK 80
>sp|Q0I7L4|RS20_SYNS3 30S ribosomal protein S20 OS=Synechococcus sp. (strain CC9311)
GN=rpsT PE=3 SV=1
Length = 99
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
S+ KR E+ R+ NK+ KS ++T MK+ A + P + + L + A+S
Sbjct: 6 SSKKRVEIGERNRLQNKAYKSALRTLMKRCFTACSAYIEAPGDEAKTTLTTS--LNAAFS 63
Query: 140 VIDKAVKVGTLHRNTGARRKSRLA-RRKKAVE 170
IDKAVK G +HRN GA +KSRL+ K+A+E
Sbjct: 64 KIDKAVKRGVMHRNAGAHQKSRLSIAVKRAIE 95
>sp|Q605N0|RS20_METCA 30S ribosomal protein S20 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rpsT PE=3 SV=1
Length = 92
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRARQAE R +N + +S ++T +KKV+ A+D ++ ++ +A
Sbjct: 6 SAKKRARQAENNRAHNAALRSRLRTYIKKVILAVD---------SGDLTKAQEAFRQAVP 56
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKAVEIH 172
+ID +V G +HRN AR KSRL R KA+ +
Sbjct: 57 IIDSSVNKGLIHRNKAARSKSRLNARVKALALQ 89
>sp|Q3K6L2|RS20_PSEPF 30S ribosomal protein S20 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rpsT PE=3 SV=1
Length = 90
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRA+QAEKRR +N S +S V+T +K V++A+D + AQ VL V
Sbjct: 6 SAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDA-KDAEKAQAAYVLAVP-------- 56
Query: 140 VIDKAVKVGTLHRNTGARRKSRL 162
VID+ G +H+N AR KSRL
Sbjct: 57 VIDRMADKGIIHKNKAARHKSRL 79
>sp|C3KDX1|RS20_PSEFS 30S ribosomal protein S20 OS=Pseudomonas fluorescens (strain SBW25)
GN=rpsT PE=3 SV=1
Length = 92
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 80 SAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYS 139
SA KRA+QAEKRR +N S +S V+T +K V++A+D + AQ VL V
Sbjct: 6 SAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAID-TKDAEKAQAAYVLAVP-------- 56
Query: 140 VIDKAVKVGTLHRNTGARRKSRLARRKKAVEI 171
VID+ G +H+N AR KSRL KA+ +
Sbjct: 57 VIDRMADKGIIHKNKAARHKSRLNGHIKALSV 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.124 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,848,964
Number of Sequences: 539616
Number of extensions: 2148413
Number of successful extensions: 12735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 224
Number of HSP's that attempted gapping in prelim test: 11328
Number of HSP's gapped (non-prelim): 1025
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)