BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029902
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 60 QVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLG 96
+LL+ V D RT+ L+DE+LD++ L+LG
Sbjct: 313 HILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLG 349
>pdb|2POZ|A Chain A, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|B Chain B, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|C Chain C, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|D Chain D, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|E Chain E, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|F Chain F, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|G Chain G, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|H Chain H, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
Length = 392
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 76 KRTKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCY 118
+R K++ D E++ +DL G + DE C + L++C+
Sbjct: 187 RRVKAVRDAAGPEIELXVDLSGGLTTDETIRFCRKIGELDICF 229
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
5'-Adenylated, Nicked Dna
Length = 688
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 83 DEDLDELKGCLDLGFGFSYDEIPELCNTLPALEL 116
DED +EL+ LG GFS +E+ E +L AL L
Sbjct: 553 DEDSEELQAICKLGTGFSDEELEEHHQSLKALVL 586
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 98 GFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKSPES 136
G S E +C PAL + S++ D HQS K+ +S
Sbjct: 328 GLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKTKDS 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,673
Number of Sequences: 62578
Number of extensions: 194906
Number of successful extensions: 426
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 13
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)