Query 029902
Match_columns 185
No_of_seqs 115 out of 134
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 08:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lqv_P Splicing factor 3B subu 37.0 13 0.00043 23.9 1.1 15 76-90 18-32 (39)
2 2fho_A Spliceosomal protein SF 30.2 19 0.00066 23.8 1.2 16 76-91 17-32 (47)
3 1baz_A ARC repressor; transcri 25.9 37 0.0013 21.9 2.0 15 163-177 15-29 (53)
4 2kmu_A ATP-dependent DNA helic 19.2 73 0.0025 21.4 2.5 17 163-179 6-22 (56)
5 4b4o_A Epimerase family protei 15.3 38 0.0013 26.7 0.3 18 93-110 273-291 (298)
6 1und_A Advillin, P92; actin bi 12.2 70 0.0024 19.8 0.8 13 80-92 2-14 (37)
7 1wy3_A Villin; structural prot 12.1 70 0.0024 19.6 0.8 11 81-91 1-11 (35)
8 2kta_A Putative helicase; PSI, 11.7 64 0.0022 22.5 0.6 21 80-103 49-69 (74)
9 2fft_A Thylakoid soluble phosp 11.6 27 0.00093 25.7 -1.4 26 87-115 10-37 (84)
10 3zwt_A Dihydroorotate dehydrog 11.5 52 0.0018 28.8 0.1 18 82-99 69-86 (367)
No 1
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=36.99 E-value=13 Score=23.94 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=12.5
Q ss_pred cccCCCChhhhhhhh
Q 029902 76 KRTKSLTDEDLDELK 90 (185)
Q Consensus 76 rrsKSLTDlDLEELK 90 (185)
.|.|-|||+|||.+=
T Consensus 18 ~RNrpltDEeLD~mL 32 (39)
T 3lqv_P 18 ERNRPLSDEELDAMF 32 (39)
T ss_dssp HTTCCCCHHHHHHTC
T ss_pred hhcCCCCHHHHHHhC
Confidence 478899999999863
No 2
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.20 E-value=19 Score=23.84 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=12.9
Q ss_pred cccCCCChhhhhhhhh
Q 029902 76 KRTKSLTDEDLDELKG 91 (185)
Q Consensus 76 rrsKSLTDlDLEELKG 91 (185)
.|.|-|||+|||.+==
T Consensus 17 ~rnrpltDEeLD~~LP 32 (47)
T 2fho_A 17 ERNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCCSCTTHHHHHSC
T ss_pred cccCCCCHHHHHHhCC
Confidence 4678899999998744
No 3
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=25.92 E-value=37 Score=21.89 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHH
Q 029902 163 PEDVKARLKYWAQAV 177 (185)
Q Consensus 163 p~dmK~rLK~WAqaV 177 (185)
|.+++.+|+.||..=
T Consensus 15 p~eL~~~l~~~A~~~ 29 (53)
T 1baz_A 15 PREVLDLVRKVAEEN 29 (53)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 689999999999753
No 4
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=19.17 E-value=73 Score=21.41 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhh
Q 029902 163 PEDVKARLKYWAQAVAC 179 (185)
Q Consensus 163 p~dmK~rLK~WAqaVAc 179 (185)
-.++|.+||.|-++.+-
T Consensus 6 ~~~lk~~LK~WE~~F~~ 22 (56)
T 2kmu_A 6 LRDVRERLQAWERAFRR 22 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36799999999998764
No 5
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=15.29 E-value=38 Score=26.71 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=12.6
Q ss_pred hhcCCCCCCCCc-hhhhcc
Q 029902 93 LDLGFGFSYDEI-PELCNT 110 (185)
Q Consensus 93 ~DLGFgFs~E~~-PrL~~t 110 (185)
.+|||.|.+.++ .-|.++
T Consensus 273 ~~~Gf~f~yp~l~~al~~l 291 (298)
T 4b4o_A 273 LATGYQYSFPELGAALKEI 291 (298)
T ss_dssp HHTTCCCSCCSHHHHHHHH
T ss_pred HHCCCCCCCCCHHHHHHHH
Confidence 589999998765 345444
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=12.18 E-value=70 Score=19.85 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.8
Q ss_pred CCChhhhhhhhhc
Q 029902 80 SLTDEDLDELKGC 92 (185)
Q Consensus 80 SLTDlDLEELKGc 92 (185)
-|||+|++++=|+
T Consensus 2 yLsd~dF~~vFgm 14 (37)
T 1und_A 2 YLSEQDFVSVFGI 14 (37)
T ss_dssp CCCHHHHHHHHSS
T ss_pred CCCHHHHHHHHCc
Confidence 3789999988553
No 7
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=12.12 E-value=70 Score=19.63 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.4
Q ss_pred CChhhhhhhhh
Q 029902 81 LTDEDLDELKG 91 (185)
Q Consensus 81 LTDlDLEELKG 91 (185)
|||+|++++=|
T Consensus 1 Lsd~dF~~vFg 11 (35)
T 1wy3_A 1 LSDEDFKAVFG 11 (35)
T ss_dssp CCHHHHHHHHS
T ss_pred CCHHHHHHHHC
Confidence 68888888755
No 8
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=11.74 E-value=64 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=17.1
Q ss_pred CCChhhhhhhhhchhcCCCCCCCC
Q 029902 80 SLTDEDLDELKGCLDLGFGFSYDE 103 (185)
Q Consensus 80 SLTDlDLEELKGc~DLGFgFs~E~ 103 (185)
.||++=++.|. +|||.|+-|.
T Consensus 49 ~Ls~eRi~~L~---~lGf~w~~~~ 69 (74)
T 2kta_A 49 KLPNDRRLLLD---KIGFVWSLEH 69 (74)
T ss_dssp CCCHHHHHHHH---HHTCCCCCCS
T ss_pred CCCHHHHHHHH---HcCCEecccc
Confidence 58888888887 8899998653
No 9
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=11.62 E-value=27 Score=25.68 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=20.6
Q ss_pred hhhhhchh--cCCCCCCCCchhhhccchhhh
Q 029902 87 DELKGCLD--LGFGFSYDEIPELCNTLPALE 115 (185)
Q Consensus 87 EELKGc~D--LGFgFs~E~~PrL~~tLPaL~ 115 (185)
+|=||++| |||-|.+|. |..|=|=|.
T Consensus 10 keEKgl~D~i~G~i~K~dQ---~~ETDPiL~ 37 (84)
T 2fft_A 10 KQEKSFVDWLLGKITKEDQ---FYETDPILR 37 (84)
T ss_dssp CCCCSHHHHHHHHHSCCCC---SCCSCCSSS
T ss_pred cccccHHHHHhhhhhhhhh---heecchhhh
Confidence 46699999 999998875 667777775
No 10
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=11.53 E-value=52 Score=28.76 Aligned_cols=18 Identities=33% Similarity=0.746 Sum_probs=15.4
Q ss_pred ChhhhhhhhhchhcCCCC
Q 029902 82 TDEDLDELKGCLDLGFGF 99 (185)
Q Consensus 82 TDlDLEELKGc~DLGFgF 99 (185)
+|-+-++++++.+|||||
T Consensus 69 ~~~~~~~~~~~~~~g~G~ 86 (367)
T 3zwt_A 69 FDKHGEAVDGLYKMGFGF 86 (367)
T ss_dssp SSTTSSSHHHHHHTTCSE
T ss_pred cCCCHHHHHHHHhcCcCe
Confidence 456678899999999999
Done!