BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029904
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3R|A Chain A, The Crystal Structure Of The Bet3-Trs31 Heterodimer.
pdb|2J3T|A Chain A, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23
Complex.
pdb|2J3W|D Chain D, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|E Chain E, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 182
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 17 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 76
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 77 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 136
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 137 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 178
>pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p
Length = 180
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3
Length = 200
Score = 202 bits (515), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct: 24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 83
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 84 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 143
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 144 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 185
>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp
pdb|2CFH|B Chain B, Structure Of The Bet3-Tpc6b Core Of Trapp
Length = 194
Score = 202 bits (514), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct: 29 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 88
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 89 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190
>pdb|1WC9|A Chain A, The Crystal Structure Of Truncated Mouse Bet3p
Length = 165
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 123/157 (78%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 8 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 67
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 68 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 127
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV 175
+RGALEMV M E +++D L+GD E++++ ++++
Sbjct: 128 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 164
>pdb|2C0J|A Chain A, Crystal Structure Of The Bet3-Trs33 Heterodimer
Length = 161
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 124/159 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 1 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 61 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE 177
+RGALEMV M E +++D L+GD E++++ ++++ +
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 159
>pdb|3KXC|A Chain A, Mutant Transport Protein
Length = 194
Score = 199 bits (507), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 124/162 (76%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MG+NIG+RLI++FLA+SNV R DFRET
Sbjct: 29 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRAHDFRET 88
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 89 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190
>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus
Musculus At 2.04 A Resolution
Length = 192
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 111/148 (75%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+ GYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 27 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLARSNVGRCHDFRET 86
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FK +LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 87 ADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 146
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYE 166
+RGALE V E +++D L+GD E
Sbjct: 147 LRGALEXVQXAVEAKFVQDTLKGDGVTE 174
>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|E Chain E, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|J Chain J, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|K Chain K, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|P Chain P, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|Q Chain Q, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|V Chain V, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|W Chain W, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 193
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 122/180 (67%), Gaps = 4/180 (2%)
Query: 9 GDAIFANVER--NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 65
G+ I+ N N ELFTLTYG+ V QL D E + +VN L MGYNIG RLI++FLA
Sbjct: 14 GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73
Query: 66 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 124
++ + RC + +T+EV++K FK+FL +T ++NW + S+IL++NPL DFVELP D
Sbjct: 74 RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133
Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
+ L+Y NIL GV++G+LEMV + +V ++ D+LRGD E++VKL + + +E P +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 23 FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDE--FLAKSNVTRCVDFRETAE 80
++ +GAT+R LE +E+N + + +++G D F+ + RCV +
Sbjct: 166 LSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV-----FD 220
Query: 81 VIAKVGFKMFL 91
+ A+VGF M+L
Sbjct: 221 MGAEVGFSMYL 231
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 23 FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDE--FLAKSNVTRCVDFRETAE 80
++ +GAT+R LE +E+N + + +++G D F+ + RCV +
Sbjct: 160 LSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV-----FD 214
Query: 81 VIAKVGFKMFL 91
+ A+VGF M+L
Sbjct: 215 MGAEVGFSMYL 225
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 23 FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDE--FLAKSNVTRCVDFRETAE 80
++ +GAT+R LE +E+N + + +++G D F+ + RCV +
Sbjct: 176 LSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV-----FD 230
Query: 81 VIAKVGFKMFL 91
+ A+VGF M+L
Sbjct: 231 MGAEVGFSMYL 241
>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba
Length = 211
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 148 MKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+K T +DV+ G DA++ ++ +K VPE P
Sbjct: 41 LKVRETAPQDVIDGQDAWKANIEAMKDVPEATP 73
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 7 RSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYN 54
+ G IF N+ R AE L V+ LLT E+ +N+ D + N
Sbjct: 237 KKGALIFVNMRRKAERVALELSKKVKSLLTK-PEIRALNELADSLEEN 283
>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
Length = 211
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 148 MKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+K T +DV+ G DA++ ++ K VPE P
Sbjct: 41 LKVRETAPQDVIDGQDAWKANIEAXKDVPEATP 73
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 46 KQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET-AEVIAK 84
K L ++ + I L+D F KSN++ DF ET EVI K
Sbjct: 64 KLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIK 103
>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer
Length = 157
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Query: 17 ERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDF 75
E + F L + V+ + + V E+ +L MG +G L+D + + N R
Sbjct: 4 EVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKV 63
Query: 76 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNI 134
I +K G A D I+E PL++ ++ +P L
Sbjct: 64 LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 123
Query: 135 LSGVIRGALEMVSMKTEVT 153
G++ L +VT
Sbjct: 124 TGGIVEAILTHSGFPAKVT 142
>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|F Chain F, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 188
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Query: 17 ERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDF 75
E + F L + V+ + + V E+ +L MG +G L+D + + N R
Sbjct: 23 EVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKV 82
Query: 76 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNI 134
I +K G A D I+E PL++ ++ +P L
Sbjct: 83 LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 142
Query: 135 LSGVIRGALEMVSMKTEVT 153
G++ L +VT
Sbjct: 143 TGGIVEAILTHSGFPAKVT 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,479,634
Number of Sequences: 62578
Number of extensions: 207230
Number of successful extensions: 436
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 22
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)