BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029904
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus
GN=TRAPPC3 PE=2 SV=1
Length = 180
Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 126/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
N+ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15 NSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAK+ FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 75 ADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M +V +++D L+GD E+++K ++++ + P
Sbjct: 135 LRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176
>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus
GN=Trappc3 PE=2 SV=1
Length = 180
Score = 204 bits (518), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus
GN=Trappc3 PE=1 SV=1
Length = 180
Score = 204 bits (518), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens
GN=TRAPPC3 PE=1 SV=1
Length = 180
Score = 202 bits (515), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 125/162 (77%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
++ELFTLTYGA V QL D E E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
A+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium
discoideum GN=trappc3 PE=3 SV=2
Length = 186
Score = 199 bits (507), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/182 (56%), Positives = 133/182 (73%), Gaps = 2/182 (1%)
Query: 1 MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
M+ + G+ +F VE+ N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRL
Sbjct: 1 MSKKYDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRL 60
Query: 60 IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
I+EFLAKS + RC DF ETAEVIAKVGFKMFLGV A V +WDA+ + +EDNPL+DF
Sbjct: 61 IEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDF 120
Query: 120 VELPDTCQG-LYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 178
VELPD + LYY NIL GV+RGALEMV MK + T+++ L D E++V L + + +
Sbjct: 121 VELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDM 180
Query: 179 YP 180
P
Sbjct: 181 IP 182
>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet3 PE=3 SV=1
Length = 183
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 128/180 (71%), Gaps = 3/180 (1%)
Query: 7 RSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 65
+ G+ ++ V++ NAELF LTYG+ V QL D+ E+VN++LD+MGYNIGIRLI++FLA
Sbjct: 5 KIGEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLA 63
Query: 66 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 124
K+ RC DFRET E +AKVGFK+FL + +S+ DG + L+DNPL +FVELP D
Sbjct: 64 KTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPAD 123
Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
Q L+Y NIL GVIRGALEM+ M + ++RD+LRGD+ E++V L + + EE P D+
Sbjct: 124 ARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183
>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1
SV=1
Length = 193
Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 122/180 (67%), Gaps = 4/180 (2%)
Query: 9 GDAIFANVER--NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 65
G+ I+ N N ELFTLTYG+ V QL D E + +VN L MGYNIG RLI++FLA
Sbjct: 14 GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73
Query: 66 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 124
++ + RC + +T+EV++K FK+FL +T ++NW + S+IL++NPL DFVELP D
Sbjct: 74 RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133
Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
+ L+Y NIL GV++G+LEMV + +V ++ D+LRGD E++VKL + + +E P +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus
musculus GN=Bet3l PE=2 SV=1
Length = 181
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
N +LF LTYGA V QL D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC + E
Sbjct: 15 NKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEI 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSG 137
+IA+V FKM+LG+T +V+ ++ S+IL NPL +FV ELP L YCN+L G
Sbjct: 75 INIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCG 134
Query: 138 VIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 178
+IRGALEMV + VT+++D L+GD E+ + LK++ E+
Sbjct: 135 IIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175
>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo
sapiens GN=BET3L PE=1 SV=1
Length = 181
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
N +LF LTYGA V QL D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC + E
Sbjct: 15 NKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEI 74
Query: 79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSG 137
++IA+V FKM+LG+T +V+ ++ S+ILE NPLV+FV ELP L YCN+L G
Sbjct: 75 IDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCG 134
Query: 138 VIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 178
+IRGALEMV + +VT+++D L+GD E+ + LK+ E+
Sbjct: 135 IIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175
>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3
OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1
Length = 181
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRE 77
+AELF LTYGA V ++L D E+ ++V QLD+MG+N+G RL D+FLAK +NV RCVD R+
Sbjct: 16 SAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQ 75
Query: 78 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT--CQGLYYCNIL 135
A+V+ + +LGV+AT S+W + I LE NPL + V++P GL Y ++
Sbjct: 76 IADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMI 135
Query: 136 SGVIRGALEMVSMK 149
+G IRGALE V K
Sbjct: 136 AGAIRGALEAVHFK 149
>sp|P34605|TPPC3_CAEEL Probable trafficking protein particle complex subunit 3
OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1
Length = 181
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRE 77
+AELF LTYGA V ++L D E+ ++V QLD+MG+N+G RL D+FLAK +NV RCVD R+
Sbjct: 16 SAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQ 75
Query: 78 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNIL 135
A+V+ + +LG++AT S+W + +I LE NPL + V++P GL Y ++
Sbjct: 76 IADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYSQLI 135
Query: 136 SGVIRGALEMVSMK 149
+G IRGALE V K
Sbjct: 136 AGAIRGALEAVHFK 149
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium
discoideum GN=trappc5 PE=3 SV=1
Length = 186
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 3/163 (1%)
Query: 17 ERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDF 75
E N F + ++ ++ E+ K+L MGY+IG RL++ + N R
Sbjct: 19 EINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLCVREKNSKRETKL 78
Query: 76 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNI 134
I +K G A + +I ++N +V+ F+ LP L
Sbjct: 79 LGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLNCAAF 138
Query: 135 LSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE 177
++G+I G L VT + G + V L+K PE
Sbjct: 139 VAGIIEGILCSAEFPARVTAHNVAVEGKR-FPKTVILIKFNPE 180
>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 12/138 (8%)
Query: 23 FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVI 82
F L + V+ + V E+ +L Q+G+ +G+RL+D +++ R RET +V+
Sbjct: 29 FALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPLVSRERGGR----RET-KVL 83
Query: 83 AKVGF------KMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNIL 135
+ + F + G A D ++E PLV+ F+ +P L
Sbjct: 84 SVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFISVPRENSTLNCAAFT 143
Query: 136 SGVIRGALEMVSMKTEVT 153
+G++ L +VT
Sbjct: 144 AGLVEAVLGASGFPAKVT 161
>sp|P03599|POL2_CPMVS RNA2 polyprotein OS=Cowpea mosaic virus (strain SB) PE=1 SV=1
Length = 1046
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 6 PRSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 65
PR+G+ F +E+N +L ++VR L D + + + L G L+DE+L
Sbjct: 450 PRNGNVAFPQMEQNLFALSLDDTSSVRGSLLDTKFAQ--TRVLLSKAMAGGDVLLDEYLY 507
Query: 66 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTC 106
+V DFR T + + VTAT + D G C
Sbjct: 508 --DVVNGQDFRATVAFLRTHVITGKIKVTATTNISDNSGCC 546
>sp|P09246|DNBI_VZVD Major DNA-binding protein OS=Varicella-zoster virus (strain Dumas)
GN=DBP PE=3 SV=1
Length = 1204
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 112 EDNPLVDFVELPDTCQG-----------LYYC-------NILSGVIRGALEMVSMKTEVT 153
E+ ++F+ LP TC G L YC N L+ +I GA + +
Sbjct: 871 EEYAAINFINLPPTCIGELAQFYMANLILKYCDHSQYLINTLTSIITGARRPRDPSSVLH 930
Query: 154 WIRDVLRGDDAYELQVKLLKQVPEEYP 180
WIR + E Q K L + E P
Sbjct: 931 WIRKDVTSAADIETQAKALLEKTENLP 957
>sp|Q4JQU6|DNBI_VZVO Major DNA-binding protein OS=Varicella-zoster virus (strain Oka
vaccine) GN=DBP PE=3 SV=1
Length = 1199
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 112 EDNPLVDFVELPDTCQG-----------LYYC-------NILSGVIRGALEMVSMKTEVT 153
E+ ++F+ LP TC G L YC N L+ +I GA + +
Sbjct: 871 EEYAALNFINLPPTCIGELAQFYMANLILKYCDHSQYLINTLTSIITGARRPRDPSSVLH 930
Query: 154 WIRDVLRGDDAYELQVKLLKQVPEEYP 180
WIR + E Q K L + E P
Sbjct: 931 WIRKDVTSAADIETQAKALLEKTENLP 957
>sp|P32345|PP4C_YEAST Serine/threonine-protein phosphatase 4 catalytic subunit
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PPH3 PE=1 SV=2
Length = 308
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 28 GATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGF 87
GA L +D E+V+ + G+ G R +D+FL K+N V+ A + G+
Sbjct: 187 GAMCDLLWSDPEDVDTWSLSPRGAGFLFGKREVDQFLEKNN----VELIARAHQLVMEGY 242
Query: 88 K-MFLGVTATVSNWDADGTC 106
K MF G TV W A C
Sbjct: 243 KEMFDGGLVTV--WSAPNYC 260
>sp|A4IJC9|PTH_GEOTN Peptidyl-tRNA hydrolase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=pth PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 45 NKQLDQMGYNIGIRLIDEFLAKSNVT-RCVDFRETAEVIAKVGFKMFLGVTATVSNWDAD 103
K+ +Q +NIG +IDE + NV+ + FR + G K+ L T N +
Sbjct: 11 GKEYEQTRHNIGFFVIDELAKRWNVSLKTAKFRGLFGTASVFGEKVALCKPLTYMNLSGE 70
Query: 104 GTCCSIILEDNPLVDFVEL 122
C PL+DF ++
Sbjct: 71 CVC--------PLIDFYDI 81
>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1
SV=1
Length = 155
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 38 LEEVEEVNKQLDQMGYNIGIRLID--EFLAKSNVTRCVDFRETAEVIAKVG-----FKMF 90
+E+ ++ L +GY +GI+L++ F + ++ + +R T ++++ V +
Sbjct: 22 MEQRSDIEADLKSIGYEVGIKLLELCNFEREVRISTLL-YRATFDLLSLVSDSDRRVEKA 80
Query: 91 LGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKT 150
V T D+DG F+ +PD GL +I+ G+I+ AL +
Sbjct: 81 RDVDRTYLLTDSDGL----------FSRFISVPDEWNGLSADSIVCGMIQAALMASGYDS 130
Query: 151 EVT 153
EVT
Sbjct: 131 EVT 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,827,890
Number of Sequences: 539616
Number of extensions: 2575126
Number of successful extensions: 6915
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6891
Number of HSP's gapped (non-prelim): 22
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)