Query 029904
Match_columns 185
No_of_seqs 104 out of 482
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cue_D Transport protein parti 100.0 6.6E-66 2.2E-70 422.0 14.9 184 1-184 6-193 (193)
2 1sz7_A BET3 homolog, trafficki 100.0 4.2E-63 1.4E-67 406.9 18.2 176 10-185 14-190 (200)
3 2j3w_B ZGC 92866, trafficking 100.0 1.5E-53 5.2E-58 347.5 15.1 152 19-177 25-180 (188)
4 2c0j_B R32611_2; palmitate; HE 100.0 1.7E-49 5.8E-54 316.4 13.1 149 19-173 4-159 (160)
5 3cue_B Transport protein parti 100.0 4.7E-49 1.6E-53 336.3 12.4 165 9-177 47-276 (283)
6 2bjn_A TPC6, trafficking prote 100.0 3.4E-48 1.2E-52 308.9 12.7 149 19-173 5-159 (160)
7 2oso_A Hypothetical protein MJ 96.5 0.015 5.2E-07 45.3 8.7 129 19-174 29-160 (163)
8 2kii_A Putative uncharacterize 95.2 0.3 1E-05 38.3 11.4 125 30-173 50-180 (181)
9 3tfg_A ALR2278 protein; heme-b 95.0 0.3 1E-05 38.6 10.9 92 70-174 92-184 (189)
10 3sj5_A Methyl-accepting chemot 92.6 0.85 2.9E-05 36.0 9.3 129 30-176 51-183 (188)
11 1hks_A Heat-shock transcriptio 65.3 5.1 0.00017 28.6 3.2 61 81-149 7-68 (106)
12 2vqg_A Uncharacterized protein 62.9 3.6 0.00012 29.5 1.9 20 129-148 15-34 (99)
13 2ve8_A FTSK, DNA translocase F 51.8 16 0.00056 24.7 3.7 39 26-66 11-51 (73)
14 2ldu_A Heat shock factor prote 44.9 4.7 0.00016 29.8 0.1 64 79-150 18-82 (125)
15 2z9e_A Cellulose synthase oper 40.8 1.3E+02 0.0043 23.4 11.2 122 7-148 9-132 (167)
16 3aj1_A Cellulose synthase oper 30.8 1.9E+02 0.0064 22.4 11.1 141 8-167 10-157 (167)
17 1ty4_C Egg laying defective EG 29.4 19 0.00065 23.0 1.0 14 48-61 17-30 (57)
18 3hts_B Heat shock transcriptio 28.6 12 0.00042 26.7 0.1 62 80-149 14-76 (102)
19 3ci9_A Heat shock factor-bindi 27.0 99 0.0034 19.0 4.1 15 41-55 26-40 (48)
20 1jg5_A GTP cyclohydrolase I fe 26.9 16 0.00055 25.2 0.4 16 40-55 51-66 (83)
21 2bnk_A Early protein GP16.7; D 23.2 1.2E+02 0.0041 19.7 4.0 43 43-89 11-55 (67)
No 1
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-66 Score=421.95 Aligned_cols=184 Identities=45% Similarity=0.818 Sum_probs=174.7
Q ss_pred CCCCCCCcchhhhh-ccch-hhhHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHH
Q 029904 1 MAPVGPRSGDAIFA-NVER-NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE 77 (185)
Q Consensus 1 ~~~~~~~~g~~~~~-~~~~-s~~~f~ll~~elV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld 77 (185)
|++++++.|+.+|+ +.++ |+|+|+|||+|||+||+++++ +.++++++|++|||+||.||+|+|++|++.+||.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le 85 (193)
T 3cue_D 6 QSRSLKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVK 85 (193)
T ss_dssp --CHHHHHHHHHHSSSSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHH
T ss_pred ccccccccchhhhccchhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHH
Confidence 45567789999998 7777 999999999999999999998 59999999999999999999999999988899999999
Q ss_pred HHHHHHHhhhhhhcCccccccccCCCCCeEEEEecCCcccccccCCCcc-CCCcchhhhhHHHHHHhhcCCceEEEEEee
Q 029904 78 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTC-QGLYYCNILSGVIRGALEMVSMKTEVTWIR 156 (185)
Q Consensus 78 ~l~fI~k~~Wk~~fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~-~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~ 156 (185)
+++||||++||++||||+|+|+||+|+++|+|++|+|||.+|+++|+++ +.++|++|+||||||||+++||+|+|||++
T Consensus 86 ~l~fI~k~~Wk~lfgk~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~ 165 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVS 165 (193)
T ss_dssp HHHHHHHHHHHHHSSCCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEee
Confidence 9999999999999999999999999999999967999999999999998 789999999999999999999999999999
Q ss_pred cccCCCCceEEEEEecccccccCCCCCC
Q 029904 157 DVLRGDDAYELQVKLLKQVPEEYPYKDD 184 (185)
Q Consensus 157 d~l~g~~~t~~~Ikf~~~~~~~~~~~~~ 184 (185)
|+++|+++|+|+|||.++|+|++|++||
T Consensus 166 d~l~g~~~t~~~Ikf~~~v~d~~~~~~~ 193 (193)
T 3cue_D 166 DILRGDSQTEIKVKLNRILKDEIPIGED 193 (193)
T ss_dssp CSSSSSSCBCEEEECCCCCSCCCCCTTC
T ss_pred ccCCCCCCEEEEEEEhhhhhcccCCCCC
Confidence 9999999999999999999999999986
No 2
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=4.2e-63 Score=406.90 Aligned_cols=176 Identities=53% Similarity=0.928 Sum_probs=154.5
Q ss_pred hhhhhccch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q 029904 10 DAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFK 88 (185)
Q Consensus 10 ~~~~~~~~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk 88 (185)
..+|+|.++ |+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|+|++|++.+||.+++++++||||++||
T Consensus 14 ~~~~~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~~Wk 93 (200)
T 1sz7_A 14 ANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFK 93 (200)
T ss_dssp --------CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHTHHH
T ss_pred hhhhcccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHHHHH
Confidence 467888888 9999999999999999998889999999999999999999999999998889999999999999999999
Q ss_pred hhcCccccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEE
Q 029904 89 MFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQ 168 (185)
Q Consensus 89 ~~fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~ 168 (185)
++||||+|+|+||+++++|+|++|+|||.+||++|++++.++|++|+||||||||+++||+|||++++|+++|+++|+|+
T Consensus 94 ~lFgk~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~ 173 (200)
T 1sz7_A 94 MYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 173 (200)
T ss_dssp HHHSCCCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEE
T ss_pred HHhCCCCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEE
Confidence 99999999999999999999977999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCCCC
Q 029904 169 VKLLKQVPEEYPYKDDE 185 (185)
Q Consensus 169 Ikf~~~~~~~~~~~~~~ 185 (185)
|||.++|+|++|++||+
T Consensus 174 Ikf~~~v~~~~~~~~~~ 190 (200)
T 1sz7_A 174 MRFIRRIEDNLPAGEEA 190 (200)
T ss_dssp EEEEEEC----------
T ss_pred EEEhhhhhhccCCCcch
Confidence 99999999999999984
No 3
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=1.5e-53 Score=347.52 Aligned_cols=152 Identities=21% Similarity=0.314 Sum_probs=141.4
Q ss_pred hhhHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHhhhhhhcCcccc
Q 029904 19 NAELFTLTYGATVRQLLTDL-EEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-VTRCVDFRETAEVIAKVGFKMFLGVTAT 96 (185)
Q Consensus 19 s~~~f~ll~~elV~q~~~~~-~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~-~~R~~~~ld~l~fI~k~~Wk~~fgk~ad 96 (185)
|+|+|+|||+||| ||+++. ++.++++++|++|||+||.||+|++++|+. .+||++++|+++||||++||++||||+|
T Consensus 25 s~s~f~ll~~EiV-~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~fI~k~~Wk~lfgk~~d 103 (188)
T 2j3w_B 25 SVSAFALLFSEMV-QYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEAD 103 (188)
T ss_dssp EHHHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHH-HHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999 677665 488999999999999999999999999975 4899999999999999999999999999
Q ss_pred cccc-CCCCCeEEEEecCCccc-ccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEeccc
Q 029904 97 VSNW-DADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQ 174 (185)
Q Consensus 97 ~l~~-t~~~~~y~L~~d~npl~-~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~~ 174 (185)
+|+| |+|+++|+|+ |+||+. +|+|+|++++.++|++|+||||||||+++||+|+|++.. +|+|+|+|||+++
T Consensus 104 ~L~~st~~~~~y~i~-D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~-----~~~t~f~Ikf~~~ 177 (188)
T 2j3w_B 104 KLEQANDDDKTYYII-EKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-----HKGTTLMIKFDES 177 (188)
T ss_dssp EEEEETTEEEEEEEE-ESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-----SSSEEEEEEECHH
T ss_pred ccccccCCCCEEEEE-cCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe-----CCCEEEEEEecHH
Confidence 9997 8999999996 999997 699999999999999999999999999999998877766 5799999999999
Q ss_pred ccc
Q 029904 175 VPE 177 (185)
Q Consensus 175 ~~~ 177 (185)
|.+
T Consensus 178 v~~ 180 (188)
T 2j3w_B 178 VIA 180 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 4
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=1.7e-49 Score=316.42 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCc
Q 029904 19 NAELFTLTYGATVRQLLTDLE-----EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGV 93 (185)
Q Consensus 19 s~~~f~ll~~elV~q~~~~~~-----~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk 93 (185)
|.|+|+|||+|||+|++++.+ +.++++++|++|||+||.||+|+++ | +.+||++++|+++||||++||++|||
T Consensus 4 s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r-~~~r~~d~ld~l~fI~k~~Wk~~fgk 81 (160)
T 2c0j_B 4 DTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R-ETLAFREELDVLKFLCKDLWVAVFQK 81 (160)
T ss_dssp CHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G-GGGTTCCHHHHHHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h-ccCccCCHHHHHHHHHHHHHHHHhCC
Confidence 789999999999987777765 3567799999999999999999999 7 47899999999999999999999999
Q ss_pred cccccccCCCCCeEEEEecCCcccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEe
Q 029904 94 TATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKL 171 (185)
Q Consensus 94 ~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf 171 (185)
|+|+|+ |||+++|+|+.+++|+.+|+++|+++. .++|++|+||||||||+++||+|+|++....+ |.++|.||+
T Consensus 82 ~~d~L~-t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~---p~~~f~i~~ 157 (160)
T 2c0j_B 82 QMDSLR-TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAAL---PVCKFQVVI 157 (160)
T ss_dssp CCSEEE-ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESST---TCEEEEEEC
T ss_pred cCccce-eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCC---CceEEEEEe
Confidence 999999 899999999944456899999999987 89999999999999999999999999877654 679999999
Q ss_pred cc
Q 029904 172 LK 173 (185)
Q Consensus 172 ~~ 173 (185)
.+
T Consensus 158 ~~ 159 (160)
T 2c0j_B 158 PK 159 (160)
T ss_dssp CC
T ss_pred ec
Confidence 76
No 5
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-49 Score=336.27 Aligned_cols=165 Identities=15% Similarity=0.184 Sum_probs=140.0
Q ss_pred chhhhhccch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-------------------
Q 029904 9 GDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSN------------------- 68 (185)
Q Consensus 9 g~~~~~~~~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~------------------- 68 (185)
.+++-.|+.+ |+|+|+|||+|||+|+.++.++.++++++|++|||+||.||+|++++|+.
T Consensus 47 ~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~ss 126 (283)
T 3cue_B 47 SESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESS 126 (283)
T ss_dssp --------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred ccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccccccccc
Confidence 3444334455 99999999999997777777799999999999999999999999988863
Q ss_pred -------------------------------------------CCCCCCHHHHHHHHHHhhhhhhcCcccccc-ccCCCC
Q 029904 69 -------------------------------------------VTRCVDFRETAEVIAKVGFKMFLGVTATVS-NWDADG 104 (185)
Q Consensus 69 -------------------------------------------~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l-~~t~~~ 104 (185)
.+||.+++|+++||||++||++||||+|+| +|++++
T Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~~~ 206 (283)
T 3cue_B 127 SKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERD 206 (283)
T ss_dssp --------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSSCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccCCC
Confidence 389999999999999999999999999999 655677
Q ss_pred CeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccC-CCCceEEEEEecccccc
Q 029904 105 TCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLR-GDDAYELQVKLLKQVPE 177 (185)
Q Consensus 105 ~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~-g~~~t~~~Ikf~~~~~~ 177 (185)
++|||+.+++||++|++++ .++|++|+||||||||+++||+|+|+++.+++. ++++|+|+|||+++|.+
T Consensus 207 geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~ 276 (283)
T 3cue_B 207 NEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLD 276 (283)
T ss_dssp SCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHH
T ss_pred CEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHh
Confidence 9999997777889999974 689999999999999999999998888888876 67799999999999865
No 6
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=3.4e-48 Score=308.88 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=121.5
Q ss_pred hhhHHHHHHHHHHHHHHhccccH----HHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcc
Q 029904 19 NAELFTLTYGATVRQLLTDLEEV----EEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVT 94 (185)
Q Consensus 19 s~~~f~ll~~elV~q~~~~~~~~----~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk~ 94 (185)
|.|+|+|||+|||+|++++.++. ++++++|++|||+||.||+|+++ |+ .+||++++|+++||||++|+++||||
T Consensus 5 s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~-~~r~~~~ld~lkfI~k~~Wk~~fgk~ 82 (160)
T 2bjn_A 5 DEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KD-TARFKDELDIMKFICKDFWTTVFKKQ 82 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hc-cCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 88999999999998888876643 37899999999999999999999 74 79999999999999999999999999
Q ss_pred ccccccCCCCCeEEEEecCCcccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEec
Q 029904 95 ATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLL 172 (185)
Q Consensus 95 ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~ 172 (185)
+|+|+ |||+++|+|+.+++|+.+|+++|+++. .++|++|+||||||||+++||+|+|+++...+ |.+.|.|++.
T Consensus 83 ~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~---p~~~F~i~~~ 158 (160)
T 2bjn_A 83 IDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM---PACKFQVMIQ 158 (160)
T ss_dssp CSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST---TCEEEEEEEC
T ss_pred Ccccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC---CceEEEEEec
Confidence 99998 899999999955567899999999874 79999999999999999999999999987654 6899999987
Q ss_pred c
Q 029904 173 K 173 (185)
Q Consensus 173 ~ 173 (185)
+
T Consensus 159 ~ 159 (160)
T 2bjn_A 159 K 159 (160)
T ss_dssp -
T ss_pred c
Confidence 5
No 7
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=96.45 E-value=0.015 Score=45.32 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhh-hcCc-ccc
Q 029904 19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKM-FLGV-TAT 96 (185)
Q Consensus 19 s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~-~fgk-~ad 96 (185)
..+.|.+++-.+-..|.....+.. |.++|+..|..+++.+ +..+ +++|+. -+|. .++
T Consensus 29 p~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-----------~~~l-----~~~~~~~G~G~l~i~ 87 (163)
T 2oso_A 29 PMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-----------IEEL-----KKIFKLMNFGDLEID 87 (163)
T ss_dssp CHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-----------HHHH-----HHHHHHHTCCEEECC
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-----------HHHH-----HHHHHHcCceEEEEE
Confidence 788899888877754533222222 9999999999886531 1122 345543 2332 122
Q ss_pred ccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEEEeccc
Q 029904 97 VSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQVKLLKQ 174 (185)
Q Consensus 97 ~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~l~g~~~t~~~Ikf~~~ 174 (185)
......+.+.+.+...++|...- | .+-.-++|.+|++.|+++.+ |=++.|.=++....|++.+.|.++..+.
T Consensus 88 ~~~~~~~~~~~~i~v~~s~e~~~---~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~~~ 160 (163)
T 2oso_A 88 ENKILLKNPPYKIKLSNPPYQWV---S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEVDE 160 (163)
T ss_dssp HHHHHHSCSCEEEEEESCSCTTC---C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEEC-
T ss_pred eccccccCCcEEEEEEeCceeec---C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEHHH
Confidence 11000233557777677776532 2 23456788899999998874 6678888899999999999999998764
No 8
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=95.18 E-value=0.3 Score=38.31 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=79.4
Q ss_pred HHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHH---HHhhcCCCCCCCHHHHHHH-HHHhhhhhhcCcccccccc-CCC
Q 029904 30 TVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDE---FLAKSNVTRCVDFRETAEV-IAKVGFKMFLGVTATVSNW-DAD 103 (185)
Q Consensus 30 lV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~---~~~r~~~~R~~~~ld~l~f-I~k~~Wk~~fgk~ad~l~~-t~~ 103 (185)
||..+++... +.+ +-|+.+|...=..+.+. ++ | ...-..+++.-+.- |+..+=+.+-+-.+-..+. ..+
T Consensus 50 lv~a~s~~~g~~~~---~ll~~fG~~~~~~~~~~y~~~l-~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~ 124 (181)
T 2kii_A 50 IVQDVAQRLNMPIQ---DVVKAFGQFLFNGLASRHTDVV-D-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLP 124 (181)
T ss_dssp HHHHHHHHTTCCHH---HHHHHHHHHHHHHHHHHHHHHH-G-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECS
T ss_pred HHHHHHHHHCcCHH---HHHHHHHHHHHHHHHHHhHHHH-h-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECC
Confidence 4444444443 433 56777787664333333 22 1 12334455555554 7777777777766666543 234
Q ss_pred CCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecc
Q 029904 104 GTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLK 173 (185)
Q Consensus 104 ~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~ 173 (185)
++...|++. | ... +..++.|+|+|+-+.+|-++++...+...+|.+...|.|++.+
T Consensus 125 ~~~l~l~Y~--------S-----~R~-l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 125 NNQIALRYS--------S-----PRR-LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp SSEEEEEEE--------C-----TTC-CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred CCEEEEEEe--------c-----CCC-hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 556665522 2 122 8889999999999999999999877666668889999999864
No 9
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=95.00 E-value=0.3 Score=38.58 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCcccccccc-CCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCc
Q 029904 70 TRCVDFRETAEVIAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSM 148 (185)
Q Consensus 70 ~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l~~-t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~ 148 (185)
.-..+++..+.-|+..+=+.+-+-.+-..+. ..+.+...|++ -| ...-++.++.|+|+|+-+..|-
T Consensus 92 ~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~S-----~R~gl~~~~~Gli~~~A~~f~~ 158 (189)
T 3tfg_A 92 DSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHY--------QS-----TRCGLAPMVLGLLHGLGKRFQT 158 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEE--------EC-----SSSSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------EC-----CCCCHHHHHHHHHHHHHHHhCC
Confidence 3467888888888888888776666555532 12234555442 22 1223788999999999999998
Q ss_pred eEEEEEeecccCCCCceEEEEEeccc
Q 029904 149 KTEVTWIRDVLRGDDAYELQVKLLKQ 174 (185)
Q Consensus 149 ~~~v~~~~d~l~g~~~t~~~Ikf~~~ 174 (185)
++++...+..-.+.+.+.|.|++.+.
T Consensus 159 ~v~i~~~~~~~~~~~h~~f~i~~~~~ 184 (189)
T 3tfg_A 159 KVEVTQTAFRETGEDHDIFSIKYEDS 184 (189)
T ss_dssp EEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred CeEEEEEeccCCCCCeEEEEEEECCC
Confidence 99998888776777899999998764
No 10
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=92.57 E-value=0.85 Score=36.00 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=79.5
Q ss_pred HHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCccccccccC-CCCCe
Q 029904 30 TVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWD-ADGTC 106 (185)
Q Consensus 30 lV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l~~t-~~~~~ 106 (185)
||..+++... +.+ +-|+.+|...=..+.+.+- +- ..+-..+++.-+.-|+..+=+.+-+-.+-..+.+ .++++
T Consensus 51 lv~a~s~~~g~~~~---~ll~~fG~~~~~~~~~~y~-~~l~g~~~~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~ 126 (188)
T 3sj5_A 51 IFAKVSEKTGKNVN---EIWREVGRQNIKTFSEWFP-SYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDA 126 (188)
T ss_dssp HHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHCG-GGTTTCCHHHHHHTHHHHHHHTTTTSTTCCCCEEEEEEEETTE
T ss_pred HHHHHHHHHCcCHH---HHHHHHHHHHHHHHHHhHH-HHhCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCE
Confidence 4444444433 443 4677777666444444321 10 1234556677777777777776666666555421 23455
Q ss_pred EEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC-ceEEEEEeccccc
Q 029904 107 CSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD-AYELQVKLLKQVP 176 (185)
Q Consensus 107 y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~-~t~~~Ikf~~~~~ 176 (185)
..|++ -| .. -++.++.|+|+||-+-.|-++++.-++....++. ..+|+|+|+....
T Consensus 127 l~l~Y--------~S-----~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~~ 183 (188)
T 3sj5_A 127 IEMEY--------VS-----KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVF 183 (188)
T ss_dssp EEEEE--------EE-----TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCS
T ss_pred EEEEE--------EC-----CC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChhh
Confidence 55542 22 23 6789999999999999999998877665433333 7799999998754
No 11
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=65.34 E-value=5.1 Score=28.63 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHhhhhhhcCcc-ccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCce
Q 029904 81 VIAKVGFKMFLGVT-ATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMK 149 (185)
Q Consensus 81 fI~k~~Wk~~fgk~-ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~ 149 (185)
|+.| +|.|+=.-. .+.+.|++++..|+|. |..-+.+-| ||.-...-+|++|+- =|.+-||+
T Consensus 7 F~~K-L~~mv~d~~~~~iI~W~~~G~sFvI~-d~~~F~~~v-Lp~yFkh~n~~SFvR-----QLN~YGF~ 68 (106)
T 1hks_A 7 FLAK-LWRLVDDADTNRLICWTKDGQSFVIQ-NQAQFAKEL-LPLNYKHNNMASFIR-----QLNMYGFH 68 (106)
T ss_dssp THHH-HHHHHSSSTTTTTSEESTTTSCEECS-CCSTTTTTT-STTTTSCCCHHHHHH-----HHHHHCCC
T ss_pred HHHH-HHHHhcCCCCCCEEEEeCCCCEEEEC-CHHHHHHHH-hHHhcCCCcHHHHHH-----hhhcCCCe
Confidence 6655 888876643 4567899999999965 555454433 787777778999864 37778884
No 12
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=62.87 E-value=3.6 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.2
Q ss_pred CcchhhhhHHHHHHhhcCCc
Q 029904 129 LYYCNILSGVIRGALEMVSM 148 (185)
Q Consensus 129 l~y~~~~cGiIrGaL~~lg~ 148 (185)
..|.|..||++||+|...|+
T Consensus 15 ~~~dwv~Cgiv~t~L~~~gl 34 (99)
T 2vqg_A 15 PQYNWVACGILEGGLKAAGV 34 (99)
T ss_dssp GGGSHHHHHHHHHHHHHTTC
T ss_pred hccCcccccHHHHHHHHhhc
Confidence 47889999999999999988
No 13
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=51.80 E-value=16 Score=24.67 Aligned_cols=39 Identities=26% Similarity=0.569 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhc-cc-cHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 029904 26 TYGATVRQLLTD-LE-EVEEVNKQLDQMGYNIGIRLIDEFLAK 66 (185)
Q Consensus 26 l~~elV~q~~~~-~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r 66 (185)
||-+-| +++.. .. +.+-+..+| ++||+=..||+|.+-..
T Consensus 11 Ly~~A~-~~V~~~~~aS~S~lQR~l-rIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 11 LYDEAV-RFVTESRRASISAVQRKL-KIGYNRAARMIEAMEMA 51 (73)
T ss_dssp THHHHH-HHHHHHCCCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHhcCCccHHHHHHHH-ccChHHHHHHHHHHHHC
Confidence 566667 45443 33 777666555 79999999999998754
No 14
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.90 E-value=4.7 Score=29.85 Aligned_cols=64 Identities=11% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHHHHhhhhhhcCcc-ccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceE
Q 029904 79 AEVIAKVGFKMFLGVT-ATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKT 150 (185)
Q Consensus 79 l~fI~k~~Wk~~fgk~-ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~ 150 (185)
-.|+.| +|.|+=.-. .+.+.|++++..|+|. |..-+.+- -||.-...-+|++|+- =|.+-||+-
T Consensus 18 ~~F~~K-L~~ml~d~~~~~iI~W~~~G~sFvV~-d~~~F~~~-vLp~yFkh~nfsSFvR-----QLN~YGF~K 82 (125)
T 2ldu_A 18 PAFLTK-LWTLVSDPDTDALICWSPSGNSFHVF-DQGQFAKE-VLPKYFKHNNMASFVR-----QLNMYGFRK 82 (125)
T ss_dssp CHHHHH-HHHHHHCTTTTTTEEECTTSSEEEEC-CHHHHHHH-HHHHHSSCCCHHHHHH-----HHHHTTCEE
T ss_pred CcHHHH-HHHHhhCCCCCCEEEEcCCCCEEEEe-CHHHHHHH-HhHHhcCCCcHHHHHH-----HhcccCceE
Confidence 357755 788876643 4566899999999976 54333332 2776667778888875 378899953
No 15
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=40.85 E-value=1.3e+02 Score=23.43 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=70.5
Q ss_pred CcchhhhhccchhhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q 029904 7 RSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVG 86 (185)
Q Consensus 7 ~~g~~~~~~~~~s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~ 86 (185)
.-|-.||..++.=..+++.|..||.+++ +.++...-| ++||.|+++++ ..+-|.++-+.=.-| ..+
T Consensus 9 ~~~~~~~~~~~~W~~FL~aLa~E~~~~a-----g~~e~~~fL----rrvG~rlA~r~----PLp~~~TlaeLE~~i-Nav 74 (167)
T 2z9e_A 9 HHGMTIFEKKPDFTLFLQTLSWEIDDQV-----GIEVRNELL----REVGRGMGTRI----MPPPCQTVDKLQIEL-NAL 74 (167)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHH----HHHHHHHTTTB----CCCCCSSHHHHHHHH-HHH
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHhC-----CHHHHHHHH----HHHHHHHHHhC----CCCCCCcHHHHHHHH-HHH
Confidence 3577888887776677888888888554 344444444 55677888765 357888888776666 556
Q ss_pred hhhh-cCccccccccCCCCCeEEEEecCCcccc-cccCCCccCCCcchhhhhHHHHHHhhcCCc
Q 029904 87 FKMF-LGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNILSGVIRGALEMVSM 148 (185)
Q Consensus 87 Wk~~-fgk~ad~l~~t~~~~~y~L~~d~npl~~-fvslP~~~~~l~y~~~~cGiIrGaL~~lg~ 148 (185)
|..+ .| .++. .-.+..+.-.|....-|+.. +-+ -..-|..+|+-|+..+=|.+.|-
T Consensus 75 la~~~WG-~V~L-e~~~~~~~L~I~H~a~P~~~a~ge----~~~~W~aAfLEGlY~~Wl~~QGG 132 (167)
T 2z9e_A 75 LALIGWG-TVTL-ELLSEDQSLRIVHENLPQVGSAGE----PSGTWLAPVLEGLYGRWVTSQAG 132 (167)
T ss_dssp HHHHTCC-EEEE-EECTTTSEEEEEEECCCCCSSCTT----TTTCTTHHHHHHHHHHHHHTTTT
T ss_pred HHhCCCc-eEEE-eecCCCCeEEEEeccCCCccccCc----cccchhHHHHHHHHHHHHHHcCC
Confidence 6533 22 2222 10122233333334556642 211 23568999999999999999888
No 16
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=30.78 E-value=1.9e+02 Score=22.44 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=74.1
Q ss_pred cchhhhhccchhhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q 029904 8 SGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGF 87 (185)
Q Consensus 8 ~g~~~~~~~~~s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~W 87 (185)
-|-.+|++++.=..+.+.|..||..+. +.++.+.-| ++||.||++++ ..+-|.++-|.=.-| ..+|
T Consensus 10 ~~~~~~~~~P~~~~Fl~aLa~Ei~~~a-----g~ee~~~fL----~r~G~rlA~r~----PLp~~~Tl~dLE~~i-N~vl 75 (167)
T 3aj1_A 10 HGMTIFEKKPDFTLFLQTLSWEIDDQV-----GIEVRNELL----REVGRGMGTRI----MPPPCQTVDKLQIEL-NALL 75 (167)
T ss_dssp -------CCSCCHHHHHHHHHHHHHHH-----HHHHHHHHH----HHHHHHHTTTB----CCCCCSSHHHHHHHH-HHHH
T ss_pred ccceeeccCcchHHHHHHHHHHHHhcC-----CHHHHHHHH----HHHHHHHHHhC----CCCCCCcHHHHHHHH-HHHH
Confidence 466788887775556777888888544 344444444 55677888765 357888888877777 5566
Q ss_pred hhh-cCccccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhc----CCceEEEEE-eecccCC
Q 029904 88 KMF-LGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEM----VSMKTEVTW-IRDVLRG 161 (185)
Q Consensus 88 k~~-fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~----lg~~~~v~~-~~d~l~g 161 (185)
..| .|.. .++-.+.++.-.|...--|+.. ...+. ...|..+|+-|+..+=|.+ .|+.|.++- ...++..
T Consensus 76 a~~~WG~V--~Lel~~~~~~L~I~H~alP~~~--a~g~~-~~~w~~A~LEGlY~~Wl~sQGGa~~l~v~~~~~d~~dl~~ 150 (167)
T 3aj1_A 76 ALIGWGTV--TLELLSEDQSLRIVHENLPQVG--SAGEP-SGTWLAPVLEGLYGRWVTSQAGAFGDYVVTRDVDAEDLNA 150 (167)
T ss_dssp HHHTCCEE--EEEECTTTSEEEEEEECCCCCS--SCTTT-TTCTTHHHHHHHHHHHHHTSTTBSCSSCCEECHHHHTTTT
T ss_pred hhCCCceE--EeecccccCeeEEEecCCCCCc--cccch-HHHHHHHHHHHHHHHHHHHcCCCccceeEEeecCcccccc
Confidence 533 3321 1111233333333334456421 22222 3567889999998888855 444553332 2224444
Q ss_pred CC-ceEE
Q 029904 162 DD-AYEL 167 (185)
Q Consensus 162 ~~-~t~~ 167 (185)
-| +|.|
T Consensus 151 ~~~~~~~ 157 (167)
T 3aj1_A 151 VPRQTII 157 (167)
T ss_dssp CCTTCEE
T ss_pred cccceee
Confidence 44 4544
No 17
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=29.39 E-value=19 Score=22.99 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHH
Q 029904 48 LDQMGYNIGIRLID 61 (185)
Q Consensus 48 Le~mGy~IG~RL~E 61 (185)
..++||+||.+|+-
T Consensus 17 i~si~~~IG~KL~~ 30 (57)
T 1ty4_C 17 ISSIGYEIGSKLAA 30 (57)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77899999998874
No 18
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=28.64 E-value=12 Score=26.72 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHhhhhhhcCcc-ccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCce
Q 029904 80 EVIAKVGFKMFLGVT-ATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMK 149 (185)
Q Consensus 80 ~fI~k~~Wk~~fgk~-ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~ 149 (185)
.|+.| +|.|+=.-. .+.+.|++++..|+|. |..-+..- -||.-...-+|++|+.- |.+-||+
T Consensus 14 ~F~~K-L~~ml~d~~~~~iI~W~~~G~sfiI~-d~~~F~~~-VLp~yFkh~nfsSFvRQ-----LN~YGF~ 76 (102)
T 3hts_B 14 AFVNK-LWSMVNDKSNEKFIHWSTSGESIVVP-NRERFVQE-VLPKYFKHSNFASFVRQ-----LNMYGWH 76 (102)
T ss_dssp HHHHH-HHHHHHCGGGTTTSEECTTSCSEEES-CHHHHHHH-THHHHCSSCCHHHHHHH-----HHHTTEE
T ss_pred cHHHH-HHHHhcCCCCCCEEEEeCCCCEEEEc-CHHHHHHH-HHHHhcCCCcHHHHHHH-----hhcCCce
Confidence 57755 888876543 4567899999999965 43323322 26766677788888754 7888995
No 19
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=27.00 E-value=99 Score=19.04 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhhH
Q 029904 41 VEEVNKQLDQMGYNI 55 (185)
Q Consensus 41 ~~ev~~~Le~mGy~I 55 (185)
-+++..|++.||-+|
T Consensus 26 S~~I~~riDdM~~RI 40 (48)
T 3ci9_A 26 SDQIIGRIDDMSSRI 40 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 346677888888765
No 20
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=26.86 E-value=16 Score=25.23 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHhhhhH
Q 029904 40 EVEEVNKQLDQMGYNI 55 (185)
Q Consensus 40 ~~~ev~~~Le~mGy~I 55 (185)
..--|-.+||+|||+|
T Consensus 51 pPr~VLnKLE~~G~rV 66 (83)
T 1jg5_A 51 PPRIVLDKLECRGFRV 66 (83)
T ss_dssp CHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHhccCeEE
Confidence 4556789999999986
No 21
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=23.23 E-value=1.2e+02 Score=19.69 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHH--Hhhhhh
Q 029904 43 EVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIA--KVGFKM 89 (185)
Q Consensus 43 ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~--k~~Wk~ 89 (185)
++-..-+.-|-+|-.-++|++.. .|.....++|.+|- +.+||.
T Consensus 11 ~vLDlYe~SnIrIP~DIIEdl~~----~~L~te~EVmnYiEnqR~~WKL 55 (67)
T 2bnk_A 11 AVLDLYEQSNIRIPSDIIEDLVN----QRLQSEQEVLNYIETQRTYWKL 55 (67)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHT----TCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCcHHHHHHHHH----HhhhhHHHHHHHHHhhHhHHhh
Confidence 44556677899999999999984 57778899999995 778983
Done!