BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029905
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=evl PE=2 SV=1
Length = 692
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 81 FVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAP 135
F SS S S F SLP AVSELT+ K P S+ + ++P L P
Sbjct: 407 FQSSTHPSQQSYQSMSHFVSLPPPYAAVSELTLPKRTTPYMTSSTITQFSPVLPP 461
>sp|B2HP72|UVRC_MYCMM UvrABC system protein C OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=uvrC PE=3 SV=1
Length = 647
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L +A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKEATVDQITAVPGIGVATATAVLEALRPD 641
>sp|Q741E5|UVRC_MYCPA UvrABC system protein C OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=uvrC PE=3 SV=1
Length = 647
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L +A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKEATVDQITAVPGIGVATATAVLEALRPD 641
>sp|Q88BX8|GLMS_PSEPK Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Pseudomonas putida (strain KT2440) GN=glmS PE=3 SV=2
Length = 611
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 80 VFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPD-LAPFMS 138
VF S D + KS+PDLT A+ +K + A A+++A PD L S
Sbjct: 119 VFTSQTDTEVIVHLIHHTLKSIPDLTDALK--AAVKRLHGAYGLALISAKQPDRLVAARS 176
Query: 139 DEAMGAALGHSKDYSLKQYLLFADKLQAKAKVSDIFFFL 177
+ LG L + L +D+L A +V+D F +L
Sbjct: 177 GSPLVIGLG------LGENFLASDQL-ALRQVTDRFMYL 208
>sp|Q7MW36|RUVA_PORGI Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=ruvA PE=3 SV=1
Length = 202
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 109 SELTVLKGVGPATASAVLAAYAP-DLAPFMS 138
+LT + GVGP TA +L++YAP +LA ++
Sbjct: 72 GQLTSVSGVGPTTAQLILSSYAPQELAALIT 102
>sp|A1T8K4|UVRC_MYCVP UvrABC system protein C OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=uvrC PE=3 SV=1
Length = 678
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F SL L +A V E+T + G+G ATA AVL A D
Sbjct: 626 FGSLARLKQASVDEITAVPGIGAATARAVLEALGAD 661
>sp|B2RJ07|RUVA_PORG3 Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=ruvA PE=3 SV=1
Length = 202
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 109 SELTVLKGVGPATASAVLAAYAP-DLAPFMS 138
+LT + GVGP TA +L++YAP +LA ++
Sbjct: 72 GQLTSVSGVGPTTARLILSSYAPQELAALIT 102
>sp|B0CEV0|Y4368_ACAM1 UPF0758 protein AM1_4368 OS=Acaryochloris marina (strain MBIC
11017) GN=AM1_4368 PE=3 SV=1
Length = 243
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 109 SELTVLKGVGPATASAVLAA 128
SELT ++G+GPA A+ +LAA
Sbjct: 77 SELTTIQGIGPAKATTILAA 96
>sp|Q9CCP1|UVRC_MYCLE UvrABC system protein C OS=Mycobacterium leprae (strain TN) GN=uvrC
PE=3 SV=1
Length = 647
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKDATVEQITAVPGIGVATATAVLEALRPD 641
>sp|B8ZUN5|UVRC_MYCLB UvrABC system protein C OS=Mycobacterium leprae (strain Br4923)
GN=uvrC PE=3 SV=1
Length = 647
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKDATVEQITAVPGIGVATATAVLEALRPD 641
>sp|Q9XI23|BOR4_ARATH Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
Length = 683
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 67 WKLTRGKWR--------PRLLVFVSSLDDSSVK----SASEKAFKSLPDLTKAVSELTVL 114
W+ G +R P ++V ++L S+ + F LP + ++S TV+
Sbjct: 229 WRYGTGWYRSFIADYGVPLMVVVWTALSFSTPSKLPSGVPRRLFSPLPWDSPSLSHWTVI 288
Query: 115 KGVGPATASAVLAAYAPDL---APFMSDEAMGAALGHSKDYSLKQ 156
K +G + + AA+ P L + D ++ + L K+++LK+
Sbjct: 289 KDMGKVSPGYIFAAFIPALMIAGLYFFDHSVASQLAQQKEFNLKK 333
>sp|Q1B9D1|UVRC_MYCSS UvrABC system protein C OS=Mycobacterium sp. (strain MCS) GN=uvrC
PE=3 SV=1
Length = 676
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA-PDLAPFMSDEA 141
F S+ L +A V E+T + G+G TA AVL A P AP SD A
Sbjct: 618 FGSVARLKEASVEEITAVPGIGVTTARAVLEALGVPQAAPADSDTA 663
>sp|A1UFN2|UVRC_MYCSK UvrABC system protein C OS=Mycobacterium sp. (strain KMS) GN=uvrC
PE=3 SV=1
Length = 676
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA-PDLAPFMSDEA 141
F S+ L +A V E+T + G+G TA AVL A P AP SD A
Sbjct: 618 FGSVARLKEASVEEITAVPGIGVTTARAVLEALGVPQAAPADSDTA 663
>sp|Q54K57|TPSA_DICDI Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A
OS=Dictyostelium discoideum GN=tpsA PE=2 SV=1
Length = 733
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 3 LEFECSNVNKWKEALASYEACVESLNKPN-LISLDDYYRKELPSLIHQRNPNPHIN 57
L+++ N + EA + + V + KPN L+ + DY+ LP ++ Q+ P+ I
Sbjct: 118 LDYDDRIWNSYVEANEQFSSVVAEILKPNDLVWVHDYHMMLLPEILKQKKPDARIG 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,375,472
Number of Sequences: 539616
Number of extensions: 2233874
Number of successful extensions: 7807
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7799
Number of HSP's gapped (non-prelim): 20
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)