Query 029905
Match_columns 185
No_of_seqs 113 out of 144
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhf_A Mjogg, N-glycosylase/DN 97.7 0.00018 6.1E-09 60.0 10.1 76 98-175 113-197 (214)
2 3n0u_A Probable N-glycosylase/ 97.7 9.7E-05 3.3E-09 61.7 8.4 72 103-175 123-202 (219)
3 3fhg_A Mjogg, N-glycosylase/DN 97.7 0.00016 5.5E-09 59.3 9.4 73 103-176 111-191 (207)
4 3s6i_A DNA-3-methyladenine gly 96.5 0.0044 1.5E-07 51.5 6.0 56 104-160 134-195 (228)
5 2h56_A DNA-3-methyladenine gly 96.2 0.0084 2.9E-07 49.9 6.3 37 105-142 134-172 (233)
6 4e9f_A Methyl-CPG-binding doma 96.0 0.0037 1.3E-07 49.8 3.2 72 57-131 44-126 (161)
7 2xhi_A N-glycosylase/DNA lyase 95.9 0.05 1.7E-06 48.2 10.4 60 103-164 247-318 (360)
8 3i0w_A 8-oxoguanine-DNA-glycos 95.9 0.0049 1.7E-07 52.9 3.8 41 103-145 205-247 (290)
9 2yg9_A DNA-3-methyladenine gly 95.8 0.017 5.7E-07 47.9 6.3 39 103-142 140-180 (225)
10 4b21_A Probable DNA-3-methylad 95.8 0.0071 2.4E-07 50.5 4.1 38 104-142 145-184 (232)
11 2jhn_A ALKA, 3-methyladenine D 95.8 0.03 1E-06 47.9 8.0 38 105-143 206-244 (295)
12 1mpg_A ALKA, 3-methyladenine D 95.7 0.019 6.4E-07 48.7 6.3 43 103-146 201-245 (282)
13 1pu6_A 3-methyladenine DNA gly 94.8 0.011 3.8E-07 48.6 2.2 27 104-130 116-142 (218)
14 1kg2_A A/G-specific adenine gl 94.7 0.015 5.2E-07 47.8 2.8 37 106-143 106-142 (225)
15 2abk_A Endonuclease III; DNA-r 94.7 0.028 9.6E-07 45.7 4.2 25 105-129 105-129 (211)
16 1kea_A Possible G-T mismatches 94.3 0.045 1.5E-06 44.9 4.7 25 106-130 112-136 (221)
17 1orn_A Endonuclease III; DNA r 94.2 0.042 1.4E-06 45.4 4.3 24 106-129 110-133 (226)
18 3fsp_A A/G-specific adenine gl 93.7 0.17 5.8E-06 44.2 7.4 36 106-142 115-150 (369)
19 1s5l_U Photosystem II 12 kDa e 93.4 0.025 8.4E-07 44.5 1.4 37 106-147 60-96 (134)
20 3arc_U Photosystem II 12 kDa e 93.0 0.036 1.2E-06 41.0 1.7 37 106-147 23-59 (97)
21 3n5n_X A/G-specific adenine DN 92.4 0.12 4.3E-06 44.6 4.6 36 107-143 126-162 (287)
22 2duy_A Competence protein come 91.6 0.13 4.4E-06 35.1 3.0 36 107-147 25-60 (75)
23 2i5h_A Hypothetical protein AF 89.9 0.065 2.2E-06 44.7 0.2 63 78-147 106-169 (205)
24 2a1j_B DNA excision repair pro 89.2 0.65 2.2E-05 32.7 5.1 42 83-129 11-52 (91)
25 1x2i_A HEF helicase/nuclease; 88.8 0.28 9.5E-06 32.6 2.8 23 108-130 45-67 (75)
26 2edu_A Kinesin-like protein KI 87.3 0.21 7.2E-06 35.9 1.5 39 108-147 39-77 (98)
27 1kft_A UVRC, excinuclease ABC 87.1 0.45 1.5E-05 32.5 3.0 22 108-129 55-76 (78)
28 2ztd_A Holliday junction ATP-d 86.6 0.29 9.8E-06 40.6 2.1 22 109-130 123-144 (212)
29 1ixr_A Holliday junction DNA h 84.5 0.53 1.8E-05 38.3 2.7 20 110-129 73-92 (191)
30 1cuk_A RUVA protein; DNA repai 81.9 0.73 2.5E-05 37.7 2.5 27 105-131 69-95 (203)
31 2a1j_A DNA repair endonuclease 81.9 0.48 1.6E-05 31.7 1.2 40 108-147 3-43 (63)
32 3u5c_S 40S ribosomal protein S 81.7 2.5 8.6E-05 33.3 5.5 50 105-154 26-81 (146)
33 1z00_A DNA excision repair pro 81.5 1.2 4.2E-05 31.0 3.3 24 106-129 16-39 (89)
34 1x2i_A HEF helicase/nuclease; 80.9 1.4 4.7E-05 29.1 3.2 25 105-129 10-34 (75)
35 1z00_A DNA excision repair pro 80.6 0.81 2.8E-05 31.9 2.1 23 108-130 50-72 (89)
36 2a1j_B DNA excision repair pro 78.6 1.3 4.3E-05 31.2 2.6 23 108-130 63-85 (91)
37 3r8n_M 30S ribosomal protein S 78.2 1.8 6.2E-05 32.7 3.5 43 102-144 9-54 (114)
38 3vdp_A Recombination protein R 77.3 1.2 4.2E-05 37.2 2.5 22 104-125 21-42 (212)
39 1kft_A UVRC, excinuclease ABC 76.4 1.1 3.7E-05 30.6 1.6 21 109-129 24-44 (78)
40 3iz6_M 40S ribosomal protein S 75.9 2.7 9.4E-05 33.3 4.1 53 102-154 21-79 (152)
41 1z00_B DNA repair endonuclease 73.0 2.6 9E-05 29.9 3.0 42 106-147 15-57 (84)
42 2bcq_A DNA polymerase lambda; 72.9 1.2 4.2E-05 38.8 1.5 21 108-128 56-76 (335)
43 2fmp_A DNA polymerase beta; nu 71.9 1.4 4.7E-05 38.4 1.6 33 98-130 46-78 (335)
44 1vdd_A Recombination protein R 70.8 2.2 7.5E-05 36.0 2.5 22 104-125 7-28 (228)
45 3j20_O 30S ribosomal protein S 70.8 4.2 0.00014 32.0 4.0 39 105-143 19-60 (148)
46 2xzm_M RPS18E; ribosome, trans 69.7 2.9 9.8E-05 33.3 2.8 43 103-145 24-69 (155)
47 2fmp_A DNA polymerase beta; nu 69.2 2.9 0.0001 36.3 3.0 67 105-176 94-174 (335)
48 2w9m_A Polymerase X; SAXS, DNA 67.6 3 0.0001 38.6 2.9 24 105-128 93-116 (578)
49 2ihm_A POL MU, DNA polymerase 67.0 3.3 0.00011 36.4 3.0 26 103-128 96-121 (360)
50 2vqe_M 30S ribosomal protein S 66.5 3 0.0001 32.1 2.3 44 102-145 10-56 (126)
51 3bqs_A Uncharacterized protein 66.0 9.5 0.00032 27.5 4.8 21 109-129 4-24 (93)
52 3b0x_A DNA polymerase beta fam 63.5 4 0.00014 37.7 2.9 24 105-128 89-112 (575)
53 1jms_A Terminal deoxynucleotid 63.3 2.1 7.3E-05 38.0 1.0 33 98-130 69-101 (381)
54 1jms_A Terminal deoxynucleotid 62.5 4.5 0.00015 35.9 3.0 26 103-128 115-140 (381)
55 1vq8_Y 50S ribosomal protein L 62.5 1.6 5.4E-05 36.7 0.0 22 107-128 13-34 (241)
56 2ztd_A Holliday junction ATP-d 60.7 17 0.00059 29.8 6.0 24 139-164 165-188 (212)
57 2ihm_A POL MU, DNA polymerase 60.6 2 6.9E-05 37.8 0.3 33 98-130 50-82 (360)
58 3mab_A Uncharacterized protein 60.3 2.2 7.6E-05 31.0 0.5 58 108-165 3-63 (93)
59 2bcq_A DNA polymerase lambda; 59.6 4.6 0.00016 35.1 2.5 63 107-174 94-169 (335)
60 1wcn_A Transcription elongatio 58.5 0.86 2.9E-05 31.3 -1.9 52 87-140 17-69 (70)
61 2kp7_A Crossover junction endo 58.0 3.6 0.00012 29.4 1.3 29 98-126 47-75 (87)
62 2bgw_A XPF endonuclease; hydro 54.0 8.8 0.0003 30.6 3.1 23 108-130 161-183 (219)
63 1cuk_A RUVA protein; DNA repai 52.1 12 0.00042 30.3 3.7 22 107-128 106-127 (203)
64 1ci4_A Protein (barrier-TO-aut 51.7 5.7 0.00019 29.0 1.4 20 110-129 19-38 (89)
65 3oao_A Uncharacterized protein 51.5 14 0.00046 28.9 3.7 62 54-120 78-143 (147)
66 1ixr_A Holliday junction DNA h 49.6 14 0.00049 29.7 3.7 56 107-164 105-170 (191)
67 2nrt_A Uvrabc system protein C 47.2 9.8 0.00034 31.6 2.4 21 109-129 168-188 (220)
68 4gfj_A Topoisomerase V; helix- 43.5 12 0.0004 35.2 2.4 21 108-128 467-487 (685)
69 1pc6_A Protein NINB; structura 43.1 19 0.00066 27.8 3.4 28 148-175 100-127 (146)
70 3sgi_A DNA ligase; HET: DNA AM 40.7 5.8 0.0002 37.7 0.0 21 108-128 560-580 (615)
71 3psf_A Transcription elongatio 40.6 22 0.00076 35.7 4.1 22 108-129 716-737 (1030)
72 2w9m_A Polymerase X; SAXS, DNA 39.4 12 0.00041 34.6 1.9 42 87-128 107-150 (578)
73 3c65_A Uvrabc system protein C 37.4 7 0.00024 32.6 0.0 21 109-129 173-193 (226)
74 1b22_A DNA repair protein RAD5 37.3 17 0.00057 27.1 2.1 44 86-129 34-78 (114)
75 3bbn_M Ribosomal protein S13; 36.6 5.5 0.00019 31.4 -0.7 42 102-143 55-98 (145)
76 2bgw_A XPF endonuclease; hydro 35.8 20 0.0007 28.4 2.6 23 107-129 192-214 (219)
77 1exn_A 5'-exonuclease, 5'-nucl 35.6 15 0.00052 31.4 1.8 16 114-129 208-223 (290)
78 3psi_A Transcription elongatio 34.8 25 0.00085 36.0 3.5 27 103-129 702-734 (1219)
79 1vq8_Y 50S ribosomal protein L 34.1 8.5 0.00029 32.2 0.0 33 97-129 35-68 (241)
80 3c1y_A DNA integrity scanning 30.1 27 0.00092 31.3 2.5 43 84-127 322-365 (377)
81 3o18_A C-phycocyanin alpha sub 27.9 36 0.0012 26.6 2.7 52 52-104 15-66 (162)
82 2ziu_A MUS81 protein; helix-ha 27.8 33 0.0011 28.7 2.6 23 107-129 235-257 (311)
83 3bzc_A TEX; helix-turn-helix, 27.7 18 0.00062 35.2 1.1 33 107-140 506-538 (785)
84 4glx_A DNA ligase; inhibitor, 26.2 42 0.0015 31.5 3.3 22 107-128 542-563 (586)
85 3q8k_A Flap endonuclease 1; he 25.2 29 0.00099 30.0 1.8 17 113-129 236-252 (341)
86 3b0x_A DNA polymerase beta fam 24.5 25 0.00085 32.3 1.3 26 102-127 119-146 (575)
87 3ph0_A ASCE; type III secretio 23.8 87 0.003 21.6 3.7 25 78-102 5-29 (67)
88 1rxw_A Flap structure-specific 23.3 35 0.0012 29.1 2.0 17 113-129 239-255 (336)
89 1gm5_A RECG; helicase, replica 22.8 28 0.00097 33.4 1.4 19 110-128 116-134 (780)
90 2izo_A FEN1, flap structure-sp 22.7 36 0.0012 29.3 1.9 17 113-129 238-254 (346)
91 3ory_A Flap endonuclease 1; hy 22.4 37 0.0013 29.7 2.0 34 113-146 255-298 (363)
92 3c65_A Uvrabc system protein C 22.3 18 0.00063 30.0 0.0 23 105-128 201-223 (226)
93 2fsu_A Protein PHNH; C-P lyase 21.1 72 0.0025 26.2 3.4 22 115-137 58-79 (210)
94 2h2m_A Protein MURR1, COMM dom 20.8 24 0.00082 26.5 0.4 65 3-75 38-106 (108)
95 2owo_A DNA ligase; protein-DNA 20.3 56 0.0019 31.2 2.9 32 98-129 532-564 (671)
No 1
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.75 E-value=0.00018 Score=59.98 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=57.7
Q ss_pred HhhCccHHHHHHHhh-cccCcChHHHHHHHhhhCCCCCCcc-cHHHHHhhh---C----CCCCCCHHHHHHHHHHHHHHH
Q 029905 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPDLAPFM-SDEAMGAAL---G----HSKDYSLKQYLLFADKLQAKA 168 (185)
Q Consensus 98 f~~l~dv~~al~~L~-~LkGVGPATASaiLa~~~P~~~pFf-SDEa~~~~~---g----~~ikYt~keY~~~~~~l~~~a 168 (185)
|..+.++..+.+.|. +||||||-||+.||.... ..+|+ -|--..-++ | .+...|.+.|.++-..++..+
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444457888999999 999999999999998642 23555 666444332 4 245678999999999999999
Q ss_pred HhhCchh
Q 029905 169 KVSDIFF 175 (185)
Q Consensus 169 ~~L~~~~ 175 (185)
+++|+..
T Consensus 191 ~~~g~~~ 197 (214)
T 3fhf_A 191 EEVNLKL 197 (214)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 9998764
No 2
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.74 E-value=9.7e-05 Score=61.73 Aligned_cols=72 Identities=26% Similarity=0.232 Sum_probs=54.8
Q ss_pred cHHHHHHHhh-cccCcChHHHHHHHhh-hCCCCCCcccHHHHHhh--hC----CCCCCCHHHHHHHHHHHHHHHHhhCch
Q 029905 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPDLAPFMSDEAMGAA--LG----HSKDYSLKQYLLFADKLQAKAKVSDIF 174 (185)
Q Consensus 103 dv~~al~~L~-~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~~~--~g----~~ikYt~keY~~~~~~l~~~a~~L~~~ 174 (185)
++..+.+.|+ +|+||||-||+.||.. ..++.+| .++-+...+ .| .+..-|-+.|.++-+.+++.++++|+.
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~g~~ 201 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGES 201 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6788999999 9999999999999985 3433333 344444422 23 245778999999999999999999986
Q ss_pred h
Q 029905 175 F 175 (185)
Q Consensus 175 ~ 175 (185)
.
T Consensus 202 ~ 202 (219)
T 3n0u_A 202 P 202 (219)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=97.72 E-value=0.00016 Score=59.26 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=53.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh-hCCCCCCcccHHHHHhh--hC---C--CCCCCHHHHHHHHHHHHHHHHhhCch
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPDLAPFMSDEAMGAA--LG---H--SKDYSLKQYLLFADKLQAKAKVSDIF 174 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~~~--~g---~--~ikYt~keY~~~~~~l~~~a~~L~~~ 174 (185)
+...+.+.|++||||||-||++||.. ..++. +...+-+...+ .| . +..-|.++|.++...++..++.+|+.
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~-~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFDL-AIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCSS-CCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCc-ceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999999999999995 55432 22333344322 23 2 35679999999999999999998876
Q ss_pred hh
Q 029905 175 FF 176 (185)
Q Consensus 175 ~~ 176 (185)
..
T Consensus 190 ~~ 191 (207)
T 3fhg_A 190 VG 191 (207)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.46 E-value=0.0044 Score=51.53 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHH----HhhhCCCCCCCHHHHHHH
Q 029905 104 LTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAM----GAALGHSKDYSLKQYLLF 160 (185)
Q Consensus 104 v~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~----~~~~g~~ikYt~keY~~~ 160 (185)
...+++.|++|+||||-||..||.. ..|+.+| ..|=.+ ..+.|.+..=+.++...+
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp-vdD~~v~r~~~~~~~~~~~~~~~~~~~~ 195 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP-ADDLSIRNGYRYLHRLPKIPTKMYVLKH 195 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHHHHHHHHHTTCSSCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe-cccHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4667999999999999999999976 5676655 334333 233343333344554443
No 5
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=96.21 E-value=0.0084 Score=49.88 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=28.9
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHH
Q 029905 105 TKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAM 142 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~ 142 (185)
..+++.|++||||||-||.+||.. ..|+.+| ..|=..
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p-vdd~~~ 172 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS-VGDVGL 172 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC-TTCHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CchHHH
Confidence 478999999999999999999986 4666655 344444
No 6
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=96.03 E-value=0.0037 Score=49.85 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhhHhhhCCHHHHHHHHHH-HH------hhC----ccHHHHHHHhhcccCcChHHHHHH
Q 029905 57 NTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEK-AF------KSL----PDLTKAVSELTVLKGVGPATASAV 125 (185)
Q Consensus 57 tkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~~V~~~t~~-Af------~~l----~dv~~al~~L~~LkGVGPATASai 125 (185)
|+++-+.-+-.+|-. .-|+...+.+.+ ++.|++..+- +| .+. ..+....+.|.+|+||||-||.+|
T Consensus 44 T~~~~v~~~~~~l~~--~~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE--KYPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH--HSCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH--HCCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 567777766666653 348877776655 4455554331 11 110 013345678899999999999999
Q ss_pred HhhhCC
Q 029905 126 LAAYAP 131 (185)
Q Consensus 126 La~~~P 131 (185)
+++..-
T Consensus 121 ~~F~~~ 126 (161)
T 4e9f_A 121 RIFCVN 126 (161)
T ss_dssp HHHTSS
T ss_pred HHHHCC
Confidence 998654
No 7
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=95.95 E-value=0.05 Score=48.20 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=40.7
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHH-HH---hhhC--CC----CCCCHHHHHHHHHHH
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEA-MG---AALG--HS----KDYSLKQYLLFADKL 164 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa-~~---~~~g--~~----ikYt~keY~~~~~~l 164 (185)
+...+++.|++|+||||-||..||.. ..|+.+|. |-- .. ...| .. ...+.+.|.++.+.+
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv--DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~ 318 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV--NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF 318 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC--SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe--cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHH
Confidence 35689999999999999999999986 57777675 532 22 1224 11 223467787766555
No 8
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=95.94 E-value=0.0049 Score=52.93 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=33.2
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHHHhh
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAMGAA 145 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~~~~ 145 (185)
+...+.+.|++||||||-||..||.. ..|+.+|. |-...-+
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v~r~ 247 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWVKKA 247 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHHHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHHHHH
Confidence 46789999999999999999999965 67888886 7655433
No 9
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.80 E-value=0.017 Score=47.86 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=29.8
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHH
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAM 142 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~ 142 (185)
+...+++.|++||||||-||..||.. ..|+.+| ..|-..
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp-v~D~~v 180 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS-SGDLAL 180 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC-TTCHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee-CccHHH
Confidence 45678999999999999999999987 4566655 334433
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.79 E-value=0.0071 Score=50.54 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHH
Q 029905 104 LTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAM 142 (185)
Q Consensus 104 v~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~ 142 (185)
...+++.|++||||||-||.+||.. ..|+.+| ..|-..
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fp-v~D~~v 184 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMP-ADDSTL 184 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CccHHH
Confidence 3478999999999999999999987 4676656 335444
No 11
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=95.77 E-value=0.03 Score=47.93 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=29.1
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh-hCCCCCCcccHHHHH
Q 029905 105 TKAVSELTVLKGVGPATASAVLAA-YAPDLAPFMSDEAMG 143 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~ 143 (185)
..+.+.|++||||||-||..||.. ..|+.+| ..|=.+.
T Consensus 206 ~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp-vdD~~~r 244 (295)
T 2jhn_A 206 EEAYEYLTSFKGIGRWTAELVLSIALGKNVFP-ADDLGVR 244 (295)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC-TTCHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHccCCCccc-chHHHHH
Confidence 678999999999999999999985 2276655 3444443
No 12
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=95.69 E-value=0.019 Score=48.73 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=32.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHHHhhh
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAMGAAL 146 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfSDEa~~~~~ 146 (185)
+...+++.|++||||||-||..||.. ..|+.+| ..|-.+....
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r~~l 245 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIKQRF 245 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHHHHS
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHHHHh
Confidence 67789999999999999999999986 4565544 4555555444
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.82 E-value=0.011 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhhhC
Q 029905 104 LTKAVSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 104 v~~al~~L~~LkGVGPATASaiLa~~~ 130 (185)
...+.+.|++||||||-||.+||....
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 455788999999999999999999743
No 14
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=94.74 E-value=0.015 Score=47.82 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHH
Q 029905 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMG 143 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~ 143 (185)
.+++.|.+|+||||-||.+||....-.. -|..|--..
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~ 142 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVK 142 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHH
Confidence 3688999999999999999998743222 234665443
No 15
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.68 E-value=0.028 Score=45.72 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.9
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh
Q 029905 105 TKAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~ 129 (185)
..+++.|++||||||-||.+||...
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHH
Confidence 3467889999999999999999974
No 16
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.31 E-value=0.045 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhC
Q 029905 106 KAVSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~ 130 (185)
.+++.|.+|+||||-||.+||...-
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 4578899999999999999999753
No 17
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=94.23 E-value=0.042 Score=45.43 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.5
Q ss_pred HHHHHhhcccCcChHHHHHHHhhh
Q 029905 106 KAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (185)
.+++.|.+|+||||-||.+||...
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHH
Confidence 468899999999999999999873
No 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=93.68 E-value=0.17 Score=44.18 Aligned_cols=36 Identities=36% Similarity=0.425 Sum_probs=26.4
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHH
Q 029905 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAM 142 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~ 142 (185)
.+++.|.+|+||||-||.+||+...-..++ .-|--.
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~~-~vD~~v 150 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVPEP-AVDGNV 150 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCCCC-CCCHHH
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCCcc-cccHHH
Confidence 468889999999999999999985433233 444433
No 19
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=93.42 E-value=0.025 Score=44.45 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=31.3
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhhC
Q 029905 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALG 147 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (185)
+..+.|++|+||||++|.+|. ++.||-|=|=+.-+.|
T Consensus 60 A~~~eL~~LpGiGp~~A~~II-----~~GpF~svedL~~V~G 96 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIV-----KNAPYESVEDVLNIPG 96 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHH-----HTCCCSSGGGGGGCTT
T ss_pred cCHHHHHHCCCCCHHHHHHHH-----HcCCCCCHHHHHhCCC
Confidence 347789999999999999999 3568988888877877
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=93.00 E-value=0.036 Score=40.98 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=31.1
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhhC
Q 029905 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALG 147 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (185)
+..+.|+.|+||||++|..|.. +-||-|-|-+.-+.|
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~G 59 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 59 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTT
T ss_pred CCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccC
Confidence 3467899999999999999999 348888888777766
No 21
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.43 E-value=0.12 Score=44.57 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHhhc-ccCcChHHHHHHHhhhCCCCCCcccHHHHH
Q 029905 107 AVSELTV-LKGVGPATASAVLAAYAPDLAPFMSDEAMG 143 (185)
Q Consensus 107 al~~L~~-LkGVGPATASaiLa~~~P~~~pFfSDEa~~ 143 (185)
.++.|.+ |+||||-||.+||....-.. .|..|--..
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V~ 162 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNVA 162 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHHH
Confidence 5788887 99999999999999854322 344565443
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=91.59 E-value=0.13 Score=35.11 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=28.0
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhhC
Q 029905 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALG 147 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (185)
....|..++||||.+|..|+.-. +|-+-+-+..+.|
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~G 60 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKG 60 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCC
Confidence 35678899999999999999964 6666666665655
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=89.87 E-value=0.065 Score=44.74 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=41.3
Q ss_pred hhhHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHh-hhC
Q 029905 78 LLVFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGA-ALG 147 (185)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~dv~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~-~~g 147 (185)
+.+.|+.|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-|=|-+.- +.|
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKG 169 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTT
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCC
Confidence 34445555444443 2 3322334666788999999999999999998653 59999666643 665
No 24
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.20 E-value=0.65 Score=32.67 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=26.3
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcChHHHHHHHhhh
Q 029905 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~dv~~al~~L~~LkGVGPATASaiLa~~ 129 (185)
+.++++.++.-.+.-+ ....+..|+.++||||.||-.|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 3455665555544433 33456677788888888888888764
No 25
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.84 E-value=0.28 Score=32.62 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.6
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 029905 108 VSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (185)
.+.|++++||||.+|..|.+...
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 56788999999999999988764
No 26
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=87.30 E-value=0.21 Score=35.90 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=29.0
Q ss_pred HHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhhC
Q 029905 108 VSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALG 147 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (185)
...|..++||||.+|..|+...... -+|-+-+-+..+.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~-g~f~s~edL~~v~G 77 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEG 77 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhc-CCcCCHHHHHhCCC
Confidence 5578899999999999999986432 26765555655655
No 27
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=87.08 E-value=0.45 Score=32.55 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.8
Q ss_pred HHHhhcccCcChHHHHHHHhhh
Q 029905 108 VSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (185)
.+.|++++||||.+|..|.+..
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 5567777778877777776654
No 28
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=86.61 E-value=0.29 Score=40.65 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHhhcccCcChHHHHHHHhhhC
Q 029905 109 SELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~~ 130 (185)
+.|++++||||-||--|..-+.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 4556666666666665554443
No 29
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=84.49 E-value=0.53 Score=38.26 Aligned_cols=20 Identities=45% Similarity=0.610 Sum_probs=9.9
Q ss_pred HhhcccCcChHHHHHHHhhh
Q 029905 110 ELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 110 ~L~~LkGVGPATASaiLa~~ 129 (185)
.|.+++||||.||-+||+.+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f 92 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSAL 92 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHS
T ss_pred HHhcCCCcCHHHHHHHHHhC
Confidence 34445555555555555443
No 30
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=81.92 E-value=0.73 Score=37.73 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=19.4
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhCC
Q 029905 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P 131 (185)
+.-+..|.+++||||.||-+||+.+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 334556777888888888888887555
No 31
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=81.86 E-value=0.48 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHHhhcccCcChHHHHHHHhhhC-CCCCCcccHHHHHhhhC
Q 029905 108 VSELTVLKGVGPATASAVLAAYA-PDLAPFMSDEAMGAALG 147 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~-P~~~pFfSDEa~~~~~g 147 (185)
...|..++||||.+.-.+|.-+. -+.+.=.|-|-+..+.|
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig 43 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 43 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC
Confidence 46788999999999999998532 11223344444444444
No 32
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=81.71 E-value=2.5 Score=33.27 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCCC-CCcccHHHHHhh---hCCCCCCCH
Q 029905 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAA---LGHSKDYSL 154 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~---~g~~ikYt~ 154 (185)
+...-+||.++|||+.||-.|+... +|+. +=-.+||-...+ ...+.+|.+
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 81 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 81 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTC
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCc
Confidence 3445578999999999999999984 5643 666788766533 345556654
No 33
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=81.49 E-value=1.2 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=19.4
Q ss_pred HHHHHhhcccCcChHHHHHHHhhh
Q 029905 106 KAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (185)
.....|..++||||.||-.|+..+
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHC
Confidence 346678889999999999998864
No 34
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=80.92 E-value=1.4 Score=29.09 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh
Q 029905 105 TKAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~ 129 (185)
......|+.++||||.+|..|+..+
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc
Confidence 3345678999999999999999864
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=80.57 E-value=0.81 Score=31.90 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.5
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 029905 108 VSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (185)
.+.|++++|||+.+|..|.+...
T Consensus 50 ~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 50 REDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999864
No 36
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=78.60 E-value=1.3 Score=31.16 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 029905 108 VSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (185)
.+.|++++|||+.+|..|++...
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998863
No 37
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=78.17 E-value=1.8 Score=32.71 Aligned_cols=43 Identities=37% Similarity=0.505 Sum_probs=31.5
Q ss_pred ccHHHHHHHhhcccCcChHHHHHHHhhh--CCCC-CCcccHHHHHh
Q 029905 102 PDLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGA 144 (185)
Q Consensus 102 ~dv~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~ 144 (185)
|+-+...-+|+.++|||+.||..|+... +|+. +=-.+||-...
T Consensus 9 ~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 54 (114)
T 3r8n_M 9 PDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDT 54 (114)
T ss_dssp CCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHH
T ss_pred CCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHH
Confidence 3334455678999999999999999984 5654 56677776643
No 38
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=77.32 E-value=1.2 Score=37.19 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.4
Q ss_pred HHHHHHHhhcccCcChHHHHHH
Q 029905 104 LTKAVSELTVLKGVGPATASAV 125 (185)
Q Consensus 104 v~~al~~L~~LkGVGPATASai 125 (185)
+.+.++.|.+|+||||-||.=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6788999999999999999744
No 39
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=76.43 E-value=1.1 Score=30.55 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 029905 109 SELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (185)
..|..++||||.||-.|+..+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 357789999999999999875
No 40
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=75.95 E-value=2.7 Score=33.27 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.3
Q ss_pred ccHHHHHHHhhcccCcChHHHHHHHhhh--CCCC-CCcccHHHHHhhh---CCCCCCCH
Q 029905 102 PDLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAAL---GHSKDYSL 154 (185)
Q Consensus 102 ~dv~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~~---g~~ikYt~ 154 (185)
|+-+...-+||.++|||+.||-.|+... +|+. +=-.+||-...+. ..+.+|.+
T Consensus 21 ~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 79 (152)
T 3iz6_M 21 DGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKV 79 (152)
T ss_dssp CCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCC
T ss_pred CCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCc
Confidence 3445556678999999999999999985 5543 5667777665332 34455543
No 41
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.98 E-value=2.6 Score=29.92 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhC-CCCCCcccHHHHHhhhC
Q 029905 106 KAVSELTVLKGVGPATASAVLAAYA-PDLAPFMSDEAMGAALG 147 (185)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~-P~~~pFfSDEa~~~~~g 147 (185)
.+...|..++||||.+.-.||.-+- .+.+.=.|-|-+..+.|
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig 57 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 57 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC
Confidence 4678899999999999999997632 22233344554544554
No 42
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=72.94 E-value=1.2 Score=38.81 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=14.1
Q ss_pred HHHhhcccCcChHHHHHHHhh
Q 029905 108 VSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~ 128 (185)
+..|++|+||||.||..|--.
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHH
Confidence 334677777777777777655
No 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=71.94 E-value=1.4 Score=38.44 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=24.1
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHhhhC
Q 029905 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaiLa~~~ 130 (185)
++.+|..-..+..|.+|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445553333455689999999999999988753
No 44
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=70.85 E-value=2.2 Score=36.04 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.9
Q ss_pred HHHHHHHhhcccCcChHHHHHH
Q 029905 104 LTKAVSELTVLKGVGPATASAV 125 (185)
Q Consensus 104 v~~al~~L~~LkGVGPATASai 125 (185)
+.+-++.|.+|+||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 5677999999999999999754
No 45
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.78 E-value=4.2 Score=32.04 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCCC-CCcccHHHHH
Q 029905 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMG 143 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~ 143 (185)
+...-+||.++|||+.||-.|+... +|+. +=-.+||-..
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~ 60 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVK 60 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHH
Confidence 4455678999999999999999984 5643 6667777554
No 46
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=69.71 E-value=2.9 Score=33.26 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=31.4
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhhh--CCCC-CCcccHHHHHhh
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAA 145 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~ 145 (185)
+-+...-+|+.++|||+.||-.|+... +|+. +=-.+||-...+
T Consensus 24 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l 69 (155)
T 2xzm_M 24 GKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKI 69 (155)
T ss_dssp CSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHH
T ss_pred CCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHH
Confidence 334455688999999999999999984 5543 566777766533
No 47
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=69.20 E-value=2.9 Score=36.34 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=42.9
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHH-------h-hhC------CCCCCCHHHHHHHHHHHHHHHHh
Q 029905 105 TKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMG-------A-ALG------HSKDYSLKQYLLFADKLQAKAKV 170 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~-------~-~~g------~~ikYt~keY~~~~~~l~~~a~~ 170 (185)
..++..|++++||||.||..+-.-+-- . =|+.-. . ..| -.......|-..+.+.+.+..++
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~Gi~-t----ledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~ 168 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEGIK-T----LEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKK 168 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTTCC-S----HHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcCCC-C----HHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHh
Confidence 568999999999999999988544111 0 011111 0 111 13466777888888888888887
Q ss_pred hCchhh
Q 029905 171 SDIFFF 176 (185)
Q Consensus 171 L~~~~~ 176 (185)
+.-..-
T Consensus 169 ~~~~~~ 174 (335)
T 2fmp_A 169 VDSEYI 174 (335)
T ss_dssp HCTTCE
T ss_pred cCCCcE
Confidence 664433
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=67.61 E-value=3 Score=38.64 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh
Q 029905 105 TKAVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (185)
...+..|+++.||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 457889999999999999999986
No 49
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=66.98 E-value=3.3 Score=36.36 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~ 128 (185)
....+|..|+++.||||.||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35568999999999999999988544
No 50
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=66.47 E-value=3 Score=32.07 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred ccHHHHHHHhhcccCcChHHHHHHHhhh--CCCC-CCcccHHHHHhh
Q 029905 102 PDLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAA 145 (185)
Q Consensus 102 ~dv~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfSDEa~~~~ 145 (185)
|+-+...-+|+.++|||+.||..|+... +|+. +--.+||-...+
T Consensus 10 ~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l 56 (126)
T 2vqe_M 10 PRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL 56 (126)
T ss_dssp CCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHH
T ss_pred CCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHH
Confidence 3334445678999999999999999984 5653 555677766533
No 51
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=66.03 E-value=9.5 Score=27.53 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 029905 109 SELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (185)
..|+.|++|||+++-.+-.++
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vG 24 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTT
T ss_pred HHhhcCCCCCHHHHHHHHHcC
Confidence 456778888888877776663
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=63.48 E-value=4 Score=37.66 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.4
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh
Q 029905 105 TKAVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (185)
...+..|+++.||||.||-+|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 346889999999999999999886
No 53
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=63.33 E-value=2.1 Score=37.99 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHhhhC
Q 029905 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaiLa~~~ 130 (185)
++.+|..-..+..|.+|+|||+.||..|--...
T Consensus 69 l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 69 LKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445553333344599999999999999987743
No 54
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.54 E-value=4.5 Score=35.88 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh
Q 029905 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 103 dv~~al~~L~~LkGVGPATASaiLa~ 128 (185)
.+..+|..|+++.||||.||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 35568999999999999999988554
No 55
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=62.53 E-value=1.6 Score=36.74 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=0.0
Q ss_pred HHHHhhcccCcChHHHHHHHhh
Q 029905 107 AVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (185)
....|..++||||.+|-.|+..
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp ----------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHc
Confidence 3456778889999998888875
No 56
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=60.68 E-value=17 Score=29.82 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHH
Q 029905 139 DEAMGAALGHSKDYSLKQYLLFADKL 164 (185)
Q Consensus 139 DEa~~~~~g~~ikYt~keY~~~~~~l 164 (185)
+|+..++.+ ..|+-+|=...+.++
T Consensus 165 ~ea~~AL~~--LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVG--LGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 556665552 456666655544444
No 57
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.60 E-value=2 Score=37.77 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=23.7
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHhhhC
Q 029905 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaiLa~~~ 130 (185)
.+.+|..-..+..|.+|+|||+.||..|--...
T Consensus 50 l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 50 LKSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345553333344599999999999999988754
No 58
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=60.29 E-value=2.2 Score=31.02 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHhhcccCcChHHHHHHHhhhCCCC---CCcccHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 029905 108 VSELTVLKGVGPATASAVLAAYAPDL---APFMSDEAMGAALGHSKDYSLKQYLLFADKLQ 165 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~---~pFfSDEa~~~~~g~~ikYt~keY~~~~~~l~ 165 (185)
|..|+.|++|||+++-.+-.++=.+. .--=++++|.-++.....=++.-+-.+..+++
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~~L~aL~gAi~ 63 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEGAVQ 63 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 55688899999999998888743211 11124566655542222333444444444443
No 59
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=59.56 E-value=4.6 Score=35.11 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=40.5
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhh-------C------CCCCCCHHHHHHHHHHHHHHHHhhCc
Q 029905 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAAL-------G------HSKDYSLKQYLLFADKLQAKAKVSDI 173 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~-------g------~~ikYt~keY~~~~~~l~~~a~~L~~ 173 (185)
.++.|+++.||||.||..+-.-+-- . =|+.-.+.. | -.......|-..+.+.+.+..+++.-
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~-t----ledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~~ 168 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFR-S----LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 168 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCC-S----HHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCC-C----HHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcCC
Confidence 6888999999999999988554111 0 112111100 2 13466778888888888888887654
Q ss_pred h
Q 029905 174 F 174 (185)
Q Consensus 174 ~ 174 (185)
.
T Consensus 169 ~ 169 (335)
T 2bcq_A 169 G 169 (335)
T ss_dssp T
T ss_pred C
Confidence 4
No 60
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=58.50 E-value=0.86 Score=31.34 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHH
Q 029905 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140 (185)
Q Consensus 87 ~~~V~~~t~~Af~~l~dv~-~al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDE 140 (185)
+..+.+....++..+.|+. .+.+.|+.++|++.++|..|.....- .|+|.++
T Consensus 17 ~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 17 RDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 3444444444444444432 25778888888888888887776532 3566543
No 61
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=57.98 E-value=3.6 Score=29.38 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=20.5
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHH
Q 029905 98 FKSLPDLTKAVSELTVLKGVGPATASAVL 126 (185)
Q Consensus 98 f~~l~dv~~al~~L~~LkGVGPATASaiL 126 (185)
++..|..-..-+.+..|+||||-++.-|=
T Consensus 47 Lk~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 47 LQRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 34555444445566789999999998763
No 62
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=54.05 E-value=8.8 Score=30.62 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.5
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 029905 108 VSELTVLKGVGPATASAVLAAYA 130 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (185)
...|..++||||.+|-.|+.-+.
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 44688999999999999999753
No 63
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=52.13 E-value=12 Score=30.32 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.4
Q ss_pred HHHHhhcccCcChHHHHHHHhh
Q 029905 107 AVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (185)
-.+.|++.+|||+.||--|..-
T Consensus 106 d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 106 EVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHH
Confidence 3678999999999999988643
No 64
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=51.74 E-value=5.7 Score=29.02 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.3
Q ss_pred HhhcccCcChHHHHHHHhhh
Q 029905 110 ELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 110 ~L~~LkGVGPATASaiLa~~ 129 (185)
.+++++||||+++--+-.-.
T Consensus 19 ~V~evpGIG~~~~~~L~~~G 38 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERG 38 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTT
T ss_pred CcccCCCcCHHHHHHHHHcC
Confidence 47889999999998876643
No 65
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=51.49 E-value=14 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCchhhhHhhhCCHH--HHHHHHHHH-HhhCccHHHHHHHhh-cccCcChH
Q 029905 54 PHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDS--SVKSASEKA-FKSLPDLTKAVSELT-VLKGVGPA 120 (185)
Q Consensus 54 ~~ltkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~--~V~~~t~~A-f~~l~dv~~al~~L~-~LkGVGPA 120 (185)
.|+|.+||..|...==+ |.-.+++..+|.= ....+++.- -+..|.+.+.++.+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 58999999999998654 6666887777541 122222222 234566777777777 69999887
No 66
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=49.60 E-value=14 Score=29.68 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcc----------cHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 029905 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFM----------SDEAMGAALGHSKDYSLKQYLLFADKL 164 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFf----------SDEa~~~~~g~~ikYt~keY~~~~~~l 164 (185)
-.+.|++++|||+.||--|..-......+++ .+|+..++. ...|+-+|=...+.++
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~~~~~~~~~~~~~~ea~~AL~--~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALA--ALGFKEAQARAVVLDL 170 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-------------------------------------
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHH--HcCCCHHHHHHHHHHH
Confidence 3678999999999999998765432221111 245555554 3456666655544444
No 67
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=47.18 E-value=9.8 Score=31.65 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.3
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 029905 109 SELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (185)
..|..++||||.||-.+|.-+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc
Confidence 467789999999999999864
No 68
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=43.45 E-value=12 Score=35.17 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHhhcccCcChHHHHHHHhh
Q 029905 108 VSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~ 128 (185)
...|+.++||||+||.-+|--
T Consensus 467 eamLtAIaGIGp~tAeRLLEk 487 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKK 487 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 69
>1pc6_A Protein NINB; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.51A {Enterobacteria phage lambda} SCOP: d.262.1.1
Probab=43.07 E-value=19 Score=27.80 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCchh
Q 029905 148 HSKDYSLKQYLLFADKLQAKAKVSDIFF 175 (185)
Q Consensus 148 ~~ikYt~keY~~~~~~l~~~a~~L~~~~ 175 (185)
+..+++.+++..|++.+++.+.+.||.+
T Consensus 100 sTskl~~~ems~~Ie~i~a~aae~GV~~ 127 (146)
T 1pc6_A 100 STSRMRVGEFAELLELIQAFGTERGVKW 127 (146)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 4569999999999999999999999876
No 70
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=40.71 E-value=5.8 Score=37.70 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=0.0
Q ss_pred HHHhhcccCcChHHHHHHHhh
Q 029905 108 VSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~ 128 (185)
.+.|.++.||||.+|..|...
T Consensus 560 ~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 560 TDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ---------------------
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 556666666666666666554
No 71
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=40.63 E-value=22 Score=35.68 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHhhcccCcChHHHHHHHhhh
Q 029905 108 VSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (185)
-..|.-+.|+||..|.+|+.-.
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r 737 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSL 737 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHH
Confidence 6788899999999999999875
No 72
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=39.41 E-value=12 Score=34.57 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhCccHHHHHH--HhhcccCcChHHHHHHHhh
Q 029905 87 DSSVKSASEKAFKSLPDLTKAVS--ELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 87 ~~~V~~~t~~Af~~l~dv~~al~--~L~~LkGVGPATASaiLa~ 128 (185)
+..++.+-..+|..+.|+..|+. .|++++|||+-||.-|+..
T Consensus 107 pk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 107 PKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 44555555445555567777653 7889999999999998654
No 73
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=37.39 E-value=7 Score=32.61 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 029905 109 SELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (185)
..|..++||||.||-.||.-+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F 193 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF 193 (226)
T ss_dssp ---------------------
T ss_pred ccccccCCCCHHHHHHHHHHh
Confidence 467899999999999999874
No 74
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=37.26 E-value=17 Score=27.13 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhhCccHH-HHHHHhhcccCcChHHHHHHHhhh
Q 029905 86 DDSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 86 ~~~~V~~~t~~Af~~l~dv~-~al~~L~~LkGVGPATASaiLa~~ 129 (185)
.+..+++.-..+|....++. ..-+.|++++|||+++|--|+.+.
T Consensus 34 g~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 34 NANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp SHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 35666666666676554432 236789999999999999999985
No 75
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.63 E-value=5.5 Score=31.42 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=28.2
Q ss_pred ccHHHHHHHhhcccCcChHHHHHHHhhhC-CC-CCCcccHHHHH
Q 029905 102 PDLTKAVSELTVLKGVGPATASAVLAAYA-PD-LAPFMSDEAMG 143 (185)
Q Consensus 102 ~dv~~al~~L~~LkGVGPATASaiLa~~~-P~-~~pFfSDEa~~ 143 (185)
|+-+...-.|+.++|||+.||..|+.... |+ .+--.+||-+.
T Consensus 55 p~~K~v~~aLt~IyGIG~~~A~~I~~~~gI~~~rv~~Lte~ei~ 98 (145)
T 3bbn_M 55 PNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVI 98 (145)
T ss_dssp CCSSBTTTGGGGSTTCCSSTTTGGGTTTTCCSCBTTSCCSSTTH
T ss_pred CCCCEEEEeeeeecCccHHHHHHHHHHcCCCceEcCCCCHHHHH
Confidence 44455556789999999999999998642 22 24445555443
No 76
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=35.85 E-value=20 Score=28.41 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHhhcccCcChHHHHHHHhhh
Q 029905 107 AVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (185)
..+.|.+++|||+.+|..|....
T Consensus 192 ~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 192 SKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35678999999999999998765
No 77
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=35.61 E-value=15 Score=31.45 Aligned_cols=16 Identities=13% Similarity=0.578 Sum_probs=14.7
Q ss_pred ccCcChHHHHHHHhhh
Q 029905 114 LKGVGPATASAVLAAY 129 (185)
Q Consensus 114 LkGVGPATASaiLa~~ 129 (185)
++||||-||.-+|.-+
T Consensus 208 VpGIG~KTA~kLL~~~ 223 (290)
T 1exn_A 208 VEGIGAKRGYNIIREF 223 (290)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCcCCHhHHHHHHHHc
Confidence 8999999999999865
No 78
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=34.82 E-value=25 Score=35.97 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.7
Q ss_pred cHHHH------HHHhhcccCcChHHHHHHHhhh
Q 029905 103 DLTKA------VSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 103 dv~~a------l~~L~~LkGVGPATASaiLa~~ 129 (185)
|+-.| -..|.-+.|+||..|.+|+...
T Consensus 702 diNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r 734 (1219)
T 3psi_A 702 EVNKATDNNYYASALKYISGFGKRKAIDFLQSL 734 (1219)
T ss_dssp EHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHH
T ss_pred cHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 55555 6788899999999999999875
No 79
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=34.15 E-value=8.5 Score=32.22 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhcccCcChHHHHHHHhhh
Q 029905 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 97 Af~~l~dv~-~al~~L~~LkGVGPATASaiLa~~ 129 (185)
+|..+.++. +..+.|++++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 454444443 346788999999999999998764
No 80
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=30.07 E-value=27 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=26.9
Q ss_pred hCCHHHHHHHHHHHHhhCccH-HHHHHHhhcccCcChHHHHHHHh
Q 029905 84 SLDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLA 127 (185)
Q Consensus 84 sN~~~~V~~~t~~Af~~l~dv-~~al~~L~~LkGVGPATASaiLa 127 (185)
.-++..++.... -|..+..+ .+.++.|.+..|||+.+|..|--
T Consensus 322 rl~~~iae~Lv~-~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 322 RIPLSIGYNVVR-MFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp CCCHHHHHHHHH-HHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 334444444433 35544443 33588889999999999988743
No 81
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=27.94 E-value=36 Score=26.64 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCchhhhHhhhCCHHHHHHHHHHHHhhCccH
Q 029905 52 PNPHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPDL 104 (185)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~~V~~~t~~Af~~l~dv 104 (185)
..+|++..||..|-.. +.+|.-|-..-+.+.+|.+..|.++..+-|...|++
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~~~~~~P~l 66 (162)
T 3o18_A 15 QGRFLSNTELQAVDGR-FKRAVASMEAARALTNNAQSLIDGAAQAVYQKFPYT 66 (162)
T ss_dssp TTCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGG
T ss_pred cCCCCCHHHHHHHHHH-HhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCc
Confidence 3579999999998776 456788888899999999999999999999988863
No 82
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=27.81 E-value=33 Score=28.75 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.0
Q ss_pred HHHHhhcccCcChHHHHHHHhhh
Q 029905 107 AVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (185)
.+..|..++||+|..|.+|+..+
T Consensus 235 ~~~mL~~IpGVs~~~A~~I~~~y 257 (311)
T 2ziu_A 235 FARQLMQISGVSGDKAAAVLEHY 257 (311)
T ss_dssp HHHHHTTBTTCCHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHC
Confidence 57889999999999999999884
No 83
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=27.68 E-value=18 Score=35.23 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcccHH
Q 029905 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfSDE 140 (185)
....|..++||||.+|..|+.--. .+-||-|-+
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~-~~G~f~sr~ 538 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRD-ANGAFRTRD 538 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH-HHCCCSSGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 457888999999999999998632 223554444
No 84
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.22 E-value=42 Score=31.51 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=15.1
Q ss_pred HHHHhhcccCcChHHHHHHHhh
Q 029905 107 AVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (185)
..+.|..+.||||-+|..|...
T Consensus 542 ~~e~l~~i~giG~~~A~si~~f 563 (586)
T 4glx_A 542 SIEELQKVPDVGIVVASHVHNF 563 (586)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHH
Confidence 3566777777777777776653
No 85
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=25.25 E-value=29 Score=30.04 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=14.6
Q ss_pred cccCcChHHHHHHHhhh
Q 029905 113 VLKGVGPATASAVLAAY 129 (185)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (185)
.++||||-||.-+|.-+
T Consensus 236 gipGiG~KtA~kll~~~ 252 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKH 252 (341)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHc
Confidence 48999999999998753
No 86
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=24.51 E-value=25 Score=32.32 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=20.0
Q ss_pred ccHHHHH--HHhhcccCcChHHHHHHHh
Q 029905 102 PDLTKAV--SELTVLKGVGPATASAVLA 127 (185)
Q Consensus 102 ~dv~~al--~~L~~LkGVGPATASaiLa 127 (185)
.++..|+ .-|++++|||+-||--|+.
T Consensus 119 ~~l~~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 119 EKLKAALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCCCCccHHHHHHH
Confidence 3566665 3489999999999998854
No 87
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=23.79 E-value=87 Score=21.60 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.0
Q ss_pred hhhHhhhCCHHHHHHHHHHHHhhCc
Q 029905 78 LLVFVSSLDDSSVKSASEKAFKSLP 102 (185)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~ 102 (185)
|-..++++++..|+++...-+..+.
T Consensus 5 LE~~L~~~~~~~~~~i~~~L~qAl~ 29 (67)
T 3ph0_A 5 LETRLSGADPVFARELHAQLVQALG 29 (67)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5567888888889988887765554
No 88
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=23.27 E-value=35 Score=29.05 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.7
Q ss_pred cccCcChHHHHHHHhhh
Q 029905 113 VLKGVGPATASAVLAAY 129 (185)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (185)
.++||||-||.-++.-+
T Consensus 239 Gv~GiG~KtA~kLl~~~ 255 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTY 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 38999999999999864
No 89
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=22.82 E-value=28 Score=33.44 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.3
Q ss_pred HhhcccCcChHHHHHHHhh
Q 029905 110 ELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 110 ~L~~LkGVGPATASaiLa~ 128 (185)
.++.||||||.+|.++-.+
T Consensus 116 ~~~~l~gvg~~~~~~l~~l 134 (780)
T 1gm5_A 116 DIQYAKGVGPNRKKKLKKL 134 (780)
T ss_dssp CSSSSSSCCHHHHHHHHTT
T ss_pred CchhcCCCCHHHHHHHHHC
Confidence 4567999999999877554
No 90
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=22.69 E-value=36 Score=29.26 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.6
Q ss_pred cccCcChHHHHHHHhhh
Q 029905 113 VLKGVGPATASAVLAAY 129 (185)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (185)
.++||||-||--++.-+
T Consensus 238 Gv~GIG~KtA~kLi~~~ 254 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY 254 (346)
T ss_dssp CSTTCCHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 37899999999999864
No 91
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=22.43 E-value=37 Score=29.70 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=22.7
Q ss_pred cccCcChHHHHHHHhhh----------CCCCCCcccHHHHHhhh
Q 029905 113 VLKGVGPATASAVLAAY----------APDLAPFMSDEAMGAAL 146 (185)
Q Consensus 113 ~LkGVGPATASaiLa~~----------~P~~~pFfSDEa~~~~~ 146 (185)
-++||||-||.-+|.-+ +...+||=.+++.....
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~ 298 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFL 298 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhc
Confidence 46799999999999863 22245654566665443
No 92
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=22.34 E-value=18 Score=30.03 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh
Q 029905 105 TKAVSELTVLKGVGPATASAVLAA 128 (185)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (185)
.+.++.|+++ |||+.+|..|...
T Consensus 201 ~As~eeL~~V-GIG~~~A~~I~~~ 223 (226)
T 3c65_A 201 EATVEELQRA-NIPRAVAEKIYEK 223 (226)
T ss_dssp ------------------------
T ss_pred hCCHHHHHHc-CCCHHHHHHHHHH
Confidence 3457889999 9999999998754
No 93
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=21.13 E-value=72 Score=26.24 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.8
Q ss_pred cCcChHHHHHHHhhhCCCCCCcc
Q 029905 115 KGVGPATASAVLAAYAPDLAPFM 137 (185)
Q Consensus 115 kGVGPATASaiLa~~~P~~~pFf 137 (185)
.|.+||+++++|++.|++. |+.
T Consensus 58 ~~l~~A~~avlLTLlD~eT-plw 79 (210)
T 2fsu_A 58 QPLNIATTSVLLTLADNDT-PVW 79 (210)
T ss_dssp TTSCHHHHHHHHHHCCTTS-CEE
T ss_pred CCCCHHHHHHHHHHhCCCc-cce
Confidence 5689999999999999876 665
No 94
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=20.77 E-value=24 Score=26.53 Aligned_cols=65 Identities=14% Similarity=0.301 Sum_probs=45.9
Q ss_pred ccccCCCHHHHHHHHHhhHHHHHhcCC--CchhhhhhhHHhhhchhhhcc-CCCCCCCHHHHHHHHH-HHhhCCCCC
Q 029905 3 LEFECSNVNKWKEALASYEACVESLNK--PNLISLDDYYRKELPSLIHQR-NPNPHINTTELSKLVR-WKLTRGKWR 75 (185)
Q Consensus 3 ~l~~~~d~~~w~~~l~~Y~~~l~~~~k--~~L~~LD~w~~~~lp~~~~~r-~~~~~ltkdEL~~Lve-WKL~rGkfR 75 (185)
+||..-.+++|++.++.|-.+|+.+.. .++.+|..+ +.+. ..+.-+|.|+-.-+.+ ||-.+-|-|
T Consensus 38 ~lypdvt~eef~~~~~K~~~lik~i~~admd~nqleaf--------Lt~qtkkq~gls~eQa~~~~KFWK~~k~KIr 106 (108)
T 2h2m_A 38 QLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAF--------LTAQTKKQGGITSDQAAVISKFWKSHKTKIR 106 (108)
T ss_dssp HHCSSSCSSTHHHHHTTTSTTHHHHTTTCCCTTTSTTT--------HHHHTTSSSCCCHHHHHHHTTTTTTTSSSSS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHhchhhhc
Confidence 467788899999999999999998743 355554444 4321 1233499999887776 887776655
No 95
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.25 E-value=56 Score=31.23 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=22.9
Q ss_pred HhhCccH-HHHHHHhhcccCcChHHHHHHHhhh
Q 029905 98 FKSLPDL-TKAVSELTVLKGVGPATASAVLAAY 129 (185)
Q Consensus 98 f~~l~dv-~~al~~L~~LkGVGPATASaiLa~~ 129 (185)
|..+..+ .+..+.|.+++||||.+|..|....
T Consensus 532 Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 532 FGTLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 4333333 2346789999999999999988764
Done!