BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029906
         (185 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2UUI0|ACRB_ASPOR Probable ubiquitination network signaling protein acrB
           OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
           GN=acrB PE=3 SV=2
          Length = 1013

 Score = 33.5 bits (75), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 35  SKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGP--------TESNGAVEAPEVK 86
           +K++S   L  +A  + A +S P+  V+ P  R  S+          T++NG  E  +  
Sbjct: 28  NKQKSNGQLNGNANGSSAPISGPSSQVDWPSSRSNSDTAINSTVATATKANGTTECSKAD 87

Query: 87  AVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSND--DPVIFD 144
              +     +V G  D+   Q NG    +  +  +A RR   E+S  S SN   +P+   
Sbjct: 88  GNGRGYLNGYVKGNPDMSYGQANGAVPQNGGLTGQASRRT--ESSKRSGSNTSINPLQLA 145

Query: 145 TSIV 148
           ++I+
Sbjct: 146 STIL 149


>sp|Q6LV34|RAPA_PHOPR RNA polymerase-associated protein RapA OS=Photobacterium profundum
           GN=rapA PE=3 SV=1
          Length = 972

 Score = 31.6 bits (70), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 87  AVNKFEDPKWVNGTWDL-----KQFQKNGQTDWDAVIDAEARRRKWLENSP 132
           A N FE  ++V  + D      ++F++    DWD ++  EA   +W E+ P
Sbjct: 242 ATNPFETAQYVLCSLDFLRKSRRRFEQAQDADWDLLVVDEAHHLEWSEDKP 292


>sp|A8MEI9|THIC_ALKOO Phosphomethylpyrimidine synthase OS=Alkaliphilus oremlandii (strain
           OhILAs) GN=thiC PE=3 SV=1
          Length = 437

 Score = 30.8 bits (68), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 57  PAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGT--WDLKQFQKNGQTDW 114
           PA  +  P + +  EG   S  A  A ++         K V G   WDLK  +   + DW
Sbjct: 330 PAEHLRLPTLEDMKEGIIASKIAAHAGDL--------AKGVQGADEWDLKMSKARQKLDW 381

Query: 115 DAV----IDAEARRRKWLENSPE 133
           + +    ID E  RR   E+SPE
Sbjct: 382 EEMFSLSIDDEKARRYRKESSPE 404


>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
           sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
          Length = 429

 Score = 30.4 bits (67), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 92  EDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARR-RKWLENSPESSSNDD 139
           +D +W++  W L +FQ     +W AV++A   R   WL  + +  S D+
Sbjct: 139 QDARWLHPMWLLNRFQTAWPREWQAVVEANNERPPMWLRVNRQHHSRDE 187


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,532,416
Number of Sequences: 539616
Number of extensions: 2845237
Number of successful extensions: 5759
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5751
Number of HSP's gapped (non-prelim): 25
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)