Query 029906
Match_columns 185
No_of_seqs 68 out of 70
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 05:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00014 light-harvesting-like 100.0 9.5E-66 2.1E-70 439.6 11.4 179 4-184 1-184 (250)
2 PHA02337 putative high light i 98.8 9.4E-10 2E-14 71.6 1.4 25 160-184 3-27 (35)
3 PLN00084 photosystem II subuni 97.7 1.4E-05 3E-10 68.4 1.3 24 161-184 137-160 (214)
4 PF00504 Chloroa_b-bind: Chlor 97.2 0.00011 2.4E-09 56.6 1.1 26 159-184 29-54 (156)
5 PF00504 Chloroa_b-bind: Chlor 96.9 0.00041 9E-09 53.4 1.1 25 157-181 131-155 (156)
6 PLN00048 photosystem I light h 94.7 0.016 3.4E-07 50.7 1.7 25 160-184 86-110 (262)
7 PLN00101 Photosystem I light-h 94.4 0.021 4.5E-07 49.9 1.6 25 160-184 92-116 (250)
8 PLN00120 fucoxanthin-chlorophy 94.2 0.017 3.8E-07 48.4 0.8 25 159-183 168-192 (202)
9 PLN00089 fucoxanthin-chlorophy 94.2 0.02 4.4E-07 48.4 1.1 27 158-184 176-202 (209)
10 PLN00147 light-harvesting comp 94.1 0.025 5.5E-07 49.3 1.5 25 160-184 84-108 (252)
11 PLN00100 light-harvesting comp 94.0 0.026 5.7E-07 49.3 1.4 26 159-184 73-98 (246)
12 PLN00187 photosystem II light- 93.8 0.035 7.5E-07 49.4 1.8 25 160-184 134-158 (286)
13 PLN00098 light-harvesting comp 93.5 0.049 1.1E-06 48.0 2.2 26 159-184 100-125 (267)
14 PLN00089 fucoxanthin-chlorophy 93.3 0.056 1.2E-06 45.7 2.3 25 160-184 76-100 (209)
15 PLN00099 light-harvesting comp 93.1 0.048 1E-06 47.3 1.5 25 160-184 83-107 (243)
16 PLN00025 photosystem II light 92.7 0.049 1.1E-06 47.9 1.1 26 159-184 91-116 (262)
17 PLN00097 photosystem I light h 92.7 0.075 1.6E-06 46.4 2.2 25 160-184 83-107 (244)
18 PLN00171 photosystem light-ha 92.3 0.062 1.3E-06 48.8 1.3 26 159-184 148-173 (324)
19 PLN00170 photosystem II light- 92.2 0.065 1.4E-06 47.0 1.3 25 160-184 96-120 (255)
20 PLN00147 light-harvesting comp 91.7 0.089 1.9E-06 46.0 1.5 27 158-184 199-225 (252)
21 PLN00100 light-harvesting comp 89.5 0.18 3.9E-06 44.2 1.4 23 157-179 158-180 (246)
22 PLN00187 photosystem II light- 89.5 0.14 3.1E-06 45.6 0.8 28 157-184 233-260 (286)
23 PLN00025 photosystem II light 88.2 0.24 5.1E-06 43.7 1.3 27 158-184 205-231 (262)
24 PLN00099 light-harvesting comp 88.0 0.24 5.2E-06 43.1 1.2 23 157-179 184-206 (243)
25 PLN00048 photosystem I light h 88.0 0.25 5.4E-06 43.4 1.3 27 158-184 209-235 (262)
26 PLN00171 photosystem light-ha 88.0 0.23 5.1E-06 45.1 1.2 27 158-184 272-298 (324)
27 PLN00098 light-harvesting comp 87.0 0.28 6.1E-06 43.3 1.1 27 157-183 213-239 (267)
28 PLN00097 photosystem I light h 84.9 0.48 1E-05 41.4 1.4 23 158-180 196-218 (244)
29 PLN00101 Photosystem I light-h 84.5 0.47 1E-05 41.6 1.2 21 157-177 198-218 (250)
30 PLN00120 fucoxanthin-chlorophy 84.4 0.28 6E-06 41.3 -0.2 23 159-181 64-86 (202)
31 PLN00170 photosystem II light- 72.6 1.6 3.5E-05 38.5 0.9 24 158-182 220-243 (255)
32 PF14963 CAML: Calcium signal- 68.5 2.3 4.9E-05 38.2 0.9 13 119-131 6-18 (263)
33 PLN02449 ferrochelatase 58.4 5.2 0.00011 38.0 1.4 16 169-184 463-478 (485)
34 PF09782 NDUF_B6: NADH:ubiquin 46.4 11 0.00024 31.3 1.3 21 122-144 29-49 (156)
35 PF10999 DUF2839: Protein of u 39.6 31 0.00067 25.3 2.6 43 121-174 3-48 (68)
36 KOG2705 Predicted membrane pro 36.1 15 0.00033 35.1 0.7 67 105-179 280-346 (471)
37 PF07225 NDUF_B4: NADH-ubiquin 28.3 64 0.0014 25.9 2.9 63 112-179 29-92 (125)
38 PF05400 FliT: Flagellar prote 23.2 54 0.0012 21.8 1.4 19 112-130 8-26 (84)
39 PF06543 Lac_bphage_repr: Lact 22.3 46 0.001 23.5 1.0 21 98-118 4-24 (49)
40 PLN03181 glycosyltransferase; 22.1 69 0.0015 31.0 2.4 29 111-145 105-134 (453)
41 PRK10548 flagellar biosynthesi 22.1 57 0.0012 25.6 1.6 19 112-130 28-46 (121)
42 PF11082 DUF2880: Protein of u 21.8 41 0.00088 25.7 0.7 48 51-101 8-57 (79)
43 PF08557 Lipid_DES: Sphingolip 21.7 39 0.00084 22.6 0.5 14 121-134 16-29 (39)
44 PLN03182 xyloglucan 6-xylosylt 20.1 1.1E+02 0.0023 29.5 3.2 31 111-147 102-135 (429)
No 1
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=100.00 E-value=9.5e-66 Score=439.57 Aligned_cols=179 Identities=44% Similarity=0.775 Sum_probs=145.5
Q ss_pred cccccccCCCCCCC-ccCCccccccCcceeecCCC-ccchhhhcccccCCCccC-CCcccccCCCccc--CCCCCCCCCC
Q 029906 4 SIDLLSFSPPPSSM-LSRTQFSFTHKPTFLLSSKK-ESFFTLRASAADNGAGVS-APAVTVEEPKVRE--ASEGPTESNG 78 (185)
Q Consensus 4 s~~ma~FSPp~~~~-~~~p~~~~~~k~~~~L~~~~-~~l~~~~~as~d~ga~~~-~~a~~VE~Pk~~~--a~~~~~~sn~ 78 (185)
+|+|++++++.+++ +++|+ ..+++..+|.+++ .+++...+++.+++..++ .++..++.++... +.-...+..+
T Consensus 1 ~~~~sl~~~~~~~~~~~k~~--~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~pl~~gg~l~g~~a~gk~~~~aa 78 (250)
T PLN00014 1 MISMSLSRASSSTLVVSKPN--PQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGEAAAGKDPGPAA 78 (250)
T ss_pred CcccccCCCccccccccCCC--cccccccccccccccceEEEeecccCCCCccccCCCccccCCCcccccccccCccccc
Confidence 36778888776665 47888 8999999999999 888999999998875333 2333444443221 1111111112
Q ss_pred cccCcccccCCCccCCccccCccchhhhhhcCCccchhhhhHHHHHhhhhhcCCCCCCCCCCeeeecCCcchhhhhhccC
Q 029906 79 AVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFH 158 (185)
Q Consensus 79 A~~~~e~~~~~~f~D~rW~~GtWDl~~F~~~g~~dWDavIdaE~~rRK~Led~Pe~s~n~~pV~fdts~~Pww~wikr~h 158 (185)
++......++++|+||||+||||||+||++||+||||+|||||++||||||||||+|+|||||+|||||||||+||||||
T Consensus 79 ~~~~~~~~~~~~f~d~RW~~GtWDl~qF~~dG~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~ 158 (250)
T PLN00014 79 AAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFH 158 (250)
T ss_pred ccccccccccccccCchhcCCcccHHHHhhcCCcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHHhcc
Confidence 23333344689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
|++||++|||+|||||+++|++|.+|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~T 184 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLT 184 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999986
No 2
>PHA02337 putative high light inducible protein
Probab=98.85 E-value=9.4e-10 Score=71.59 Aligned_cols=25 Identities=28% Similarity=0.137 Sum_probs=23.6
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
++||++|||+|||||++++++|.+|
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~t 27 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATT 27 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999876
No 3
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.70 E-value=1.4e-05 Score=68.41 Aligned_cols=24 Identities=25% Similarity=-0.056 Sum_probs=22.4
Q ss_pred hhHhhcCcchhhHHHHHHHHhhcc
Q 029906 161 EAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 161 eAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.-|++|||+||+||++++++|.+|
T Consensus 137 ~nE~~NGRLAMLGF~~alitE~lT 160 (214)
T PLN00084 137 PYELFNGRLAMLGFAFAIAGDAVT 160 (214)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHh
Confidence 459999999999999999999987
No 4
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.24 E-value=0.00011 Score=56.57 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=23.6
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||+||+||+..++.|.++
T Consensus 29 ~R~aEl~hGR~AMLa~~g~~v~e~~~ 54 (156)
T PF00504_consen 29 YREAELKHGRVAMLAFVGALVQEAGT 54 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCHS
T ss_pred HHHhHHHhhhhhhhhhHHHHHHHHhc
Confidence 38999999999999999999998764
No 5
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=96.86 E-value=0.00041 Score=53.43 Aligned_cols=25 Identities=20% Similarity=-0.027 Sum_probs=21.0
Q ss_pred cCchhhHhhcCcchhhHHHHHHHHh
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYLYD 181 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l~E 181 (185)
.....+|+.|||+|||||+..++.|
T Consensus 131 ~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 131 EFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3448999999999999998877655
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=94.73 E-value=0.016 Score=50.73 Aligned_cols=25 Identities=12% Similarity=-0.089 Sum_probs=22.5
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+.|||.||+|++-.++.|.++
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhc
Confidence 5999999999999999888888764
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=94.38 E-value=0.021 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=22.7
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+.|||.||+|++-.++-|.++
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~ 116 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFT 116 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhc
Confidence 6999999999999999888888775
No 8
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=94.21 E-value=0.017 Score=48.45 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=19.6
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDAS 183 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Eal 183 (185)
+...|+-|||+||||+.-.+.=|.+
T Consensus 168 ~~~~EL~NGRLAMiai~G~~~qe~l 192 (202)
T PLN00120 168 KRAIELNQGRAAQMGILALMVHEQL 192 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3468999999999999776665554
No 9
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=94.18 E-value=0.02 Score=48.38 Aligned_cols=27 Identities=19% Similarity=-0.043 Sum_probs=21.1
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.+..+|+-|||+||+|+.-.+.-|.+|
T Consensus 176 ~~~~~El~NGRlAM~a~~g~~~~~~~t 202 (209)
T PLN00089 176 KKKDKELKNGRLAMVAIGGIATGSAIT 202 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 455789999999999997666656554
No 10
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=94.08 E-value=0.025 Score=49.29 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=22.1
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+.|||+||+|++-.++.|.++
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~ 108 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLR 108 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhc
Confidence 7999999999999999888888654
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=93.97 E-value=0.026 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=22.6
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+|++=.++.|.+.
T Consensus 73 ~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 73 LQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 47999999999999999888888754
No 12
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=93.77 E-value=0.035 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.6
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.|+|+.|||.||+|++=.++.|.++
T Consensus 134 REaELiHGRwAMLAvaG~lvpEll~ 158 (286)
T PLN00187 134 RECELIHGRWAMLATLGALSVEALT 158 (286)
T ss_pred HHHHhhhhHHHHHHhhchhhHHhcc
Confidence 7999999999999999888888763
No 13
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=93.49 E-value=0.049 Score=47.98 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=22.4
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+|++=.++-|.++
T Consensus 100 ~r~aEl~HGR~AMLA~~G~~~~e~l~ 125 (267)
T PLN00098 100 FAQAELMHSRWAMLAVAGILIPECLE 125 (267)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhc
Confidence 37999999999999998888877654
No 14
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=93.34 E-value=0.056 Score=45.74 Aligned_cols=25 Identities=20% Similarity=0.009 Sum_probs=21.0
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+-|||+||++++--++.|.++
T Consensus 76 r~~ElkhGR~AMlA~~G~~~~~~~~ 100 (209)
T PLN00089 76 RESELKHGRAAMLAVAGFIAPDFVR 100 (209)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 6999999999999998777766543
No 15
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=93.08 E-value=0.048 Score=47.33 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=21.9
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+.|||.||+|++=.++.|.++
T Consensus 83 r~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 83 KESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred HHHhccCCcHHHHHHhhHHHHHHhc
Confidence 5999999999999998888888754
No 16
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=92.73 E-value=0.049 Score=47.86 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=22.9
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+|++-.++.|.++
T Consensus 91 ~re~El~hGR~AMLa~~G~i~~e~l~ 116 (262)
T PLN00025 91 NRELEVIHARWAMLGALGCVTPELLA 116 (262)
T ss_pred HHHHHHhccHHHHHHHhhhhhHHHhh
Confidence 37999999999999999888888764
No 17
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=92.67 E-value=0.075 Score=46.35 Aligned_cols=25 Identities=12% Similarity=-0.153 Sum_probs=22.3
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+.|||.||+|++-.++-|.++
T Consensus 83 r~aEl~hGR~AMLa~~G~lv~e~l~ 107 (244)
T PLN00097 83 VQAELMHARWAMLGLAGCVAPELLT 107 (244)
T ss_pred HHHHHhcchHHHHHHhhhhHHHHhc
Confidence 5999999999999999888888764
No 18
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=92.33 E-value=0.062 Score=48.75 Aligned_cols=26 Identities=12% Similarity=-0.029 Sum_probs=22.5
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+|++=.++.|.++
T Consensus 148 ~reaELkHGR~AMLA~~G~lv~e~l~ 173 (324)
T PLN00171 148 YFNFEILHARWAMLAALGVVIPEVLD 173 (324)
T ss_pred HHHHHhccchHHHHHHhhHHHHHHhc
Confidence 48999999999999998888877653
No 19
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=92.24 E-value=0.065 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.0
Q ss_pred hhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 160 PEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 160 peAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++|+.|||.||+|++-.++.|.++
T Consensus 96 r~~El~hGR~AMLa~~G~~v~e~l~ 120 (255)
T PLN00170 96 REAELIHGRWAMAAVVGIFVGQAWS 120 (255)
T ss_pred HHHHhhccHHHHHHHHhhhhHHHcc
Confidence 6899999999999998888887764
No 20
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=91.69 E-value=0.089 Score=45.96 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.6
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.+...|+-|||+||++|+-.++-+.+|
T Consensus 199 ~~k~kEikNGRLAMlA~~G~~~q~~vt 225 (252)
T PLN00147 199 DWKLKEIKNGRLAMVAMLGFFVQASVT 225 (252)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 456789999999999998777666554
No 21
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=89.50 E-value=0.18 Score=44.19 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=18.2
Q ss_pred cCchhhHhhcCcchhhHHHHHHH
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYL 179 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l 179 (185)
..+...|+-|||+||++|+--+.
T Consensus 158 ~~~K~KEIkNGRLAMlA~lG~~~ 180 (246)
T PLN00100 158 PEMKVKEVKNGRLAMLAFLGMVS 180 (246)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhh
Confidence 35678999999999999865443
No 22
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=89.46 E-value=0.14 Score=45.58 Aligned_cols=28 Identities=14% Similarity=-0.044 Sum_probs=22.1
Q ss_pred cCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.++..+|+-|||+||++++--++-+.+|
T Consensus 233 ~~~k~kEIkNGRLAMlA~lG~~vq~~vt 260 (286)
T PLN00187 233 ETLQLAEIKHARLAMVAFLGFAVQAAAT 260 (286)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 4567899999999999988766655543
No 23
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=88.22 E-value=0.24 Score=43.66 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=20.6
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
++...|+-|||+||++|+-.++-+.+|
T Consensus 205 ~~k~kEikNGRLAMlA~~G~~~q~~vT 231 (262)
T PLN00025 205 ELKVKEIKNGRLAMFSMFGFFVQAIVT 231 (262)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhhhhc
Confidence 457889999999999987665555443
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=88.04 E-value=0.24 Score=43.08 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=18.0
Q ss_pred cCchhhHhhcCcchhhHHHHHHH
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYL 179 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l 179 (185)
..+...|+-|||+||++|+--++
T Consensus 184 ~~~k~kELkNGRLAMiA~lGf~v 206 (243)
T PLN00099 184 EEYKVKEIKNGRLALLAFVGFCV 206 (243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35667899999999999865443
No 25
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=88.03 E-value=0.25 Score=43.42 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=20.9
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.+...|+-|||+||++++--++-+.+|
T Consensus 209 ~~k~~EiknGRLAM~A~~G~~~q~~~t 235 (262)
T PLN00048 209 ELKLKEVKNGRLAMLAILGYFIQALVT 235 (262)
T ss_pred HHHHHHHhhhHHHHHHhhhHhhhhhhc
Confidence 456889999999999987666655543
No 26
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=88.02 E-value=0.23 Score=45.12 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=21.4
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.+...|+-|||+||+|++-.++-+.+|
T Consensus 272 ~~k~kELkNGRLAM~A~lG~~vq~~vT 298 (324)
T PLN00171 272 DLKVKEIKNGRLAMVAWLGFYIQAAVT 298 (324)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhc
Confidence 456789999999999998777666554
No 27
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=87.03 E-value=0.28 Score=43.28 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=20.5
Q ss_pred cCchhhHhhcCcchhhHHHHHHHHhhc
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYLYDAS 183 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l~Eal 183 (185)
..+...|+-|||+||++++--++-+.+
T Consensus 213 ~~~k~kEikNGRLAM~A~~G~~~q~~v 239 (267)
T PLN00098 213 MVLRTKEIKNGRLAMLAFVGFCFQAVY 239 (267)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 356778999999999998766554444
No 28
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=84.89 E-value=0.48 Score=41.45 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=18.2
Q ss_pred CchhhHhhcCcchhhHHHHHHHH
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLY 180 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~ 180 (185)
.|..+|.-|||+||++|+--++-
T Consensus 196 ~lk~kEiknGRLAM~A~~G~~~q 218 (244)
T PLN00097 196 ELKLKEIANGRLAMLAFLGCCAQ 218 (244)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhh
Confidence 46789999999999998755443
No 29
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=84.47 E-value=0.47 Score=41.55 Aligned_cols=21 Identities=24% Similarity=0.066 Sum_probs=17.3
Q ss_pred cCchhhHhhcCcchhhHHHHH
Q 029906 157 FHLPEAELLNGVTDPSFSFSV 177 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a 177 (185)
..+...|.-|||+||++|+--
T Consensus 198 ~~~k~kEIKNGRLAM~A~lGf 218 (250)
T PLN00101 198 EEAKEKELANGRLAMLAFLGF 218 (250)
T ss_pred HHHHHHHHhhcchHHHHHhhH
Confidence 467889999999999987643
No 30
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=84.38 E-value=0.28 Score=41.33 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=18.5
Q ss_pred chhhHhhcCcchhhHHHHHHHHh
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYD 181 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~E 181 (185)
+.++|+-|||+||++++-.++.|
T Consensus 64 ~r~~ElkhGRlAMlA~~G~~~~~ 86 (202)
T PLN00120 64 LRYVEIKHGRISMLAVVGYLVTE 86 (202)
T ss_pred HHHHHhhcccHHHHhhccceeec
Confidence 36999999999999987655544
No 31
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=72.65 E-value=1.6 Score=38.47 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.6
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhh
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDA 182 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ea 182 (185)
.|..+|.=|||+||+.|+- +++++
T Consensus 220 ~lk~kEIKnGRLAMlA~lG-f~~Qa 243 (255)
T PLN00170 220 RLKLAEIKHARLAMVAMLI-FYFEA 243 (255)
T ss_pred HHHHHHHhhhHHHHHHHHh-Hheee
Confidence 5788999999999998763 44444
No 32
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=68.48 E-value=2.3 Score=38.23 Aligned_cols=13 Identities=77% Similarity=0.838 Sum_probs=11.1
Q ss_pred hHHHHHhhhhhcC
Q 029906 119 DAEARRRKWLENS 131 (185)
Q Consensus 119 daE~~rRK~Led~ 131 (185)
-||+||||+||++
T Consensus 6 RaEaRRRKLLmNS 18 (263)
T PF14963_consen 6 RAEARRRKLLMNS 18 (263)
T ss_pred HHHHHHHHHHhhH
Confidence 4899999999863
No 33
>PLN02449 ferrochelatase
Probab=58.40 E-value=5.2 Score=38.01 Aligned_cols=16 Identities=0% Similarity=-0.020 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHhhcc
Q 029906 169 TDPSFSFSVYLYDASM 184 (185)
Q Consensus 169 aAMiGF~~a~l~Ealt 184 (185)
+||+||++.+.+|.+|
T Consensus 463 ~~~~~~~~~~~~~~~~ 478 (485)
T PLN02449 463 AAMLAVLLLLVLEVTS 478 (485)
T ss_pred hHHHHHHHHHHHHHHc
Confidence 9999999999888775
No 34
>PF09782 NDUF_B6: NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; InterPro: IPR019174 The NADH dehydrogenase [ubiquinone] complex performs the first stage of electron transfer from NADH to the respiratory chain. This entry represents an accessory subunit that is not thought to be involved in catalysis [].
Probab=46.37 E-value=11 Score=31.25 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=16.9
Q ss_pred HHHhhhhhcCCCCCCCCCCeeee
Q 029906 122 ARRRKWLENSPESSSNDDPVIFD 144 (185)
Q Consensus 122 ~~rRK~Led~Pe~s~n~~pV~fd 144 (185)
+-|||||.|. --+-+|||+..
T Consensus 29 a~Rr~WLkDQ--~Lsp~EPv~~p 49 (156)
T PF09782_consen 29 AWRRQWLKDQ--ELSPREPVLPP 49 (156)
T ss_pred HHHHHHHHhh--ccCCCCCcCCc
Confidence 5699999994 44557999998
No 35
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=39.60 E-value=31 Score=25.34 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=26.8
Q ss_pred HHHHhhhhhcCCCCCCCCCCeeeecCCcchhhhhhccCchhhH---hhcCcchhhHH
Q 029906 121 EARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAE---LLNGVTDPSFS 174 (185)
Q Consensus 121 E~~rRK~Led~Pe~s~n~~pV~fdts~~Pww~wikr~hLpeAE---lLNGRaAMiGF 174 (185)
|++|||=+-..|. ..+++. ++||--+.| .+++ .+.=|-+-+||
T Consensus 3 EAKRRke~Gl~pr-~~k~~~------~~~wlP~tk----~q~~~~~~~ttkg~w~gi 48 (68)
T PF10999_consen 3 EAKRRKELGLPPR-YKKEER------ILPWLPITK----SQAKQFYKLTTKGPWIGI 48 (68)
T ss_pred chhhhhhccCCCc-cCCccc------ccccCcccH----HHHHHHHHHhhcccchhH
Confidence 9999998754444 344443 778855543 2444 44557777777
No 36
>KOG2705 consensus Predicted membrane protein [Function unknown]
Probab=36.07 E-value=15 Score=35.11 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=49.7
Q ss_pred hhhhcCCccchhhhhHHHHHhhhhhcCCCCCCCCCCeeeecCCcchhhhhhccCchhhHhhcCcchhhHHHHHHH
Q 029906 105 QFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYL 179 (185)
Q Consensus 105 ~F~~~g~~dWDavIdaE~~rRK~Led~Pe~s~n~~pV~fdts~~Pww~wikr~hLpeAElLNGRaAMiGF~~a~l 179 (185)
-++++|+-|||++-|- +-+.+|.+|.-.+.-+-....|. .|+++.-..+..-||.|.+--|...++|
T Consensus 280 G~d~~G~~~Wdgc~n~---ki~l~ETg~~~~~~v~SFN~nTN-----~wv~~yI~kRLkflnNk~~S~g~tL~fL 346 (471)
T KOG2705|consen 280 GKDAEGNDRWDGCRNL---KIILWETGHDYNSVVESFNCNTN-----TWVKNYIHKRLKFLNNKLASHGITLSFL 346 (471)
T ss_pred CcccCCCCCcccccce---EEEEEecCCccceeeeeeecChh-----HHHHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 4678999999998664 34677888876554454445555 5789998899999999998776665554
No 37
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=28.34 E-value=64 Score=25.91 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=42.2
Q ss_pred ccchhhhhHHHHHhhhhhc-CCCCCCCCCCeeeecCCcchhhhhhccCchhhHhhcCcchhhHHHHHHH
Q 029906 112 TDWDAVIDAEARRRKWLEN-SPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGVTDPSFSFSVYL 179 (185)
Q Consensus 112 ~dWDavIdaE~~rRK~Led-~Pe~s~n~~pV~fdts~~Pww~wikr~hLpeAElLNGRaAMiGF~~a~l 179 (185)
.-|-+-|-|+++|.=++.. ||- ..-++||.++ .-|+|.++-+--+==+.+.|.+.+|++++++
T Consensus 29 ~~eR~a~Ra~Lk~eYlkq~~nP~----~~gli~DPAL-~Rw~~a~~~~~y~~FRpTPktsllg~~~~v~ 92 (125)
T PF07225_consen 29 QQERAAIRARLKREYLKQYNNPH----RKGLIFDPAL-QRWAYARAVNIYEYFRPTPKTSLLGLGFGVV 92 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC----CCCccCChHH-HHHHHHHHhCcccccccCchHHHHHHHHHHH
Confidence 4466777777777666543 454 4568899886 7788887733333335678888888877554
No 38
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=23.24 E-value=54 Score=21.85 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=16.0
Q ss_pred ccchhhhhHHHHHhhhhhc
Q 029906 112 TDWDAVIDAEARRRKWLEN 130 (185)
Q Consensus 112 ~dWDavIdaE~~rRK~Led 130 (185)
=|||.|..-+..|...++.
T Consensus 8 ~dWe~l~~l~~~R~~ll~~ 26 (84)
T PF05400_consen 8 GDWEELEELLDERQELLER 26 (84)
T ss_dssp T-HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3899999999999999954
No 39
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=22.31 E-value=46 Score=23.52 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=17.6
Q ss_pred cCccchhhhhhcCCccchhhh
Q 029906 98 NGTWDLKQFQKNGQTDWDAVI 118 (185)
Q Consensus 98 ~GtWDl~~F~~~g~~dWDavI 118 (185)
|-.-||.++..|.++|||-++
T Consensus 4 ~epiDLa~lvDd~kvdWd~wv 24 (49)
T PF06543_consen 4 NEPIDLADLVDDPKVDWDKWV 24 (49)
T ss_pred cCcccHHHHcCCcccchHHhe
Confidence 456799999999999999765
No 40
>PLN03181 glycosyltransferase; Provisional
Probab=22.13 E-value=69 Score=30.96 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=20.3
Q ss_pred CccchhhhhHHHHHhhhhhcCCCCCCCC-CCeeeec
Q 029906 111 QTDWDAVIDAEARRRKWLENSPESSSND-DPVIFDT 145 (185)
Q Consensus 111 ~~dWDavIdaE~~rRK~Led~Pe~s~n~-~pV~fdt 145 (185)
-+||| .+|+.||..||+...+. .+|++=|
T Consensus 105 i~~wD------~kR~~Wl~~~p~~~~~~~prVViVT 134 (453)
T PLN03181 105 IKNWD------EKRAEWLKLHPSFAPGAEERVVMVT 134 (453)
T ss_pred cCCHH------HHHHHHHHhCCCCCCCCCCCEEEEE
Confidence 47897 58999999999875443 3454433
No 41
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=22.11 E-value=57 Score=25.65 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.8
Q ss_pred ccchhhhhHHHHHhhhhhc
Q 029906 112 TDWDAVIDAEARRRKWLEN 130 (185)
Q Consensus 112 ~dWDavIdaE~~rRK~Led 130 (185)
=|||.||+.|..-.+.+|.
T Consensus 28 g~Wd~Li~lE~~y~~~Ve~ 46 (121)
T PRK10548 28 GQWDELIEQEVAYVQAVEE 46 (121)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4899999999999988884
No 42
>PF11082 DUF2880: Protein of unknown function (DUF2880); InterPro: IPR021305 This bacterial family of proteins has no known function.
Probab=21.79 E-value=41 Score=25.71 Aligned_cols=48 Identities=33% Similarity=0.504 Sum_probs=23.2
Q ss_pred CCccCCCcccccCCCcccCCCCCCCCCC--cccCcccccCCCccCCccccCcc
Q 029906 51 GAGVSAPAVTVEEPKVREASEGPTESNG--AVEAPEVKAVNKFEDPKWVNGTW 101 (185)
Q Consensus 51 ga~~~~~a~~VE~Pk~~~a~~~~~~sn~--A~~~~e~~~~~~f~D~rW~~GtW 101 (185)
+++.++.+..+|.|++.--.+.+-+..+ -+++...+....| ||+.||-
T Consensus 8 ~As~A~~a~~~E~p~~~GK~eAPeAp~AC~~AVKaaLPNP~~F---kWv~~t~ 57 (79)
T PF11082_consen 8 CASSAAAAVNVEAPRPRGKDEAPEAPVACMKAVKAALPNPDSF---KWVGGTA 57 (79)
T ss_pred hcccccccCchhcCCCCCCCCCCCccHHHHHHHHHhCCCchhe---eeccchh
Confidence 3444555568888875433332222111 1223333333334 7998874
No 43
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.74 E-value=39 Score=22.59 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.7
Q ss_pred HHHHhhhhhcCCCC
Q 029906 121 EARRRKWLENSPES 134 (185)
Q Consensus 121 E~~rRK~Led~Pe~ 134 (185)
-.|||.+|+.+||-
T Consensus 16 ~~RRk~IL~k~PeI 29 (39)
T PF08557_consen 16 ASRRKEILKKHPEI 29 (39)
T ss_pred HHHHHHHHHhChHH
Confidence 36899999999984
No 44
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=20.06 E-value=1.1e+02 Score=29.49 Aligned_cols=31 Identities=35% Similarity=0.709 Sum_probs=21.5
Q ss_pred CccchhhhhHHHHHhhhhhcCCCCCCC---CCCeeeecCC
Q 029906 111 QTDWDAVIDAEARRRKWLENSPESSSN---DDPVIFDTSI 147 (185)
Q Consensus 111 ~~dWDavIdaE~~rRK~Led~Pe~s~n---~~pV~fdts~ 147 (185)
-+||| .+|+.||+.||..... ..+|+.=|..
T Consensus 102 i~~wd------~~R~~wl~~~p~~~~~~~g~prVviVT~s 135 (429)
T PLN03182 102 ISDWD------EQRRRWLRKNPGFPSFVNGKPRVLLVTGS 135 (429)
T ss_pred CCCHH------HHHHHHHHhCCCCCCccCCCCCEEEEeCC
Confidence 46787 5899999999997643 3345554443
Done!