Query 029906
Match_columns 185
No_of_seqs 68 out of 70
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 08:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 96.2 0.001 3.6E-08 55.2 0.6 27 158-184 175-201 (232)
2 2wsc_3 LHCA3, type II chloroph 95.6 0.0016 5.6E-08 55.8 -0.5 27 158-184 223-249 (276)
3 2wsc_4 Chlorophyll A-B binding 95.5 0.0015 5.3E-08 55.1 -1.0 26 159-184 91-116 (251)
4 2wsc_2 LHCA2, type II chloroph 95.5 0.00096 3.3E-08 57.0 -2.3 28 157-184 215-242 (269)
5 3pl9_A Chlorophyll A-B binding 95.3 0.0037 1.3E-07 53.1 0.6 26 159-184 193-218 (243)
6 2wsc_3 LHCA3, type II chloroph 94.9 0.0017 5.9E-08 55.7 -2.5 26 159-184 99-124 (276)
7 2wsc_1 AT3G54890, LHCA1; photo 94.3 0.0061 2.1E-07 51.3 -0.6 25 157-181 185-209 (241)
8 3pl9_A Chlorophyll A-B binding 94.3 0.0085 2.9E-07 50.9 0.2 25 159-183 92-116 (243)
9 2wsc_2 LHCA2, type II chloroph 93.5 0.018 6.2E-07 49.2 0.9 26 159-184 102-127 (269)
10 2bhw_A Chlorophyll A-B binding 92.7 0.028 9.5E-07 46.7 0.7 25 159-183 61-85 (232)
11 2wsc_4 Chlorophyll A-B binding 88.0 0.15 5.1E-06 43.0 1.2 29 155-184 196-224 (251)
12 2wsc_1 AT3G54890, LHCA1; photo 87.9 0.035 1.2E-06 46.7 -2.7 25 159-183 83-107 (241)
13 3a7m_A Flagellar protein FLIT; 29.5 21 0.00073 26.7 1.5 19 112-130 28-46 (122)
14 3nkz_A Flagellar protein FLIT; 26.9 28 0.00096 26.1 1.8 21 110-130 29-49 (123)
15 3h3m_A Flagellar protein FLIT; 24.5 30 0.001 26.2 1.5 20 111-130 40-59 (126)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=96.17 E-value=0.001 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.8
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.+..+|+.|||+||+||+..++.|.+|
T Consensus 175 ~~~~~E~~nGRlAM~~~~g~~~~~~~t 201 (232)
T 2bhw_A 175 ELKVKELKNGRLAMFSMFGFFVQAIVT 201 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHhc
Confidence 467899999999999999998888765
No 2
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=95.62 E-value=0.0016 Score=55.79 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=22.6
Q ss_pred CchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 158 HLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 158 hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
.+..+|+.|||+||+||+..++.|.+|
T Consensus 223 ~~r~~Ei~nGRlAMla~~g~~~~~~~t 249 (276)
T 2wsc_3 223 DLKLKEVKNGRLAMLAILGYFVQALVT 249 (276)
T ss_dssp --CCSHHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 467899999999999999988887765
No 3
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=95.52 E-value=0.0015 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.100 Sum_probs=23.2
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+||+-.++.|.++
T Consensus 91 ~r~aEl~hGR~AMla~~G~~~~e~~~ 116 (251)
T 2wsc_4 91 FVQAELVNGRWAMLGVAGMLLPEVFT 116 (251)
T ss_dssp THHHHHHHTHHHHHHHTTSSTTSSSC
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhc
Confidence 48999999999999999888888765
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=95.50 E-value=0.00096 Score=57.02 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.2
Q ss_pred cCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
..+..+|+.|||+|||||+..++.|.+|
T Consensus 215 ~~~~~~Ei~nGRlAMla~~g~~~~~~~t 242 (269)
T 2wsc_2 215 KELRTKEIKNGRLAMLAVMGAWFQHIYT 242 (269)
T ss_dssp TTSTTTTHHHHHHHHTTTSSSCHHHHHT
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 4578999999999999999888877765
No 5
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=95.29 E-value=0.0037 Score=53.07 Aligned_cols=26 Identities=15% Similarity=-0.058 Sum_probs=23.1
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+..+|+.|||+||+||+..++.|.+|
T Consensus 193 ~r~~ElknGRlAMla~~g~~~q~~vt 218 (243)
T 3pl9_A 193 LQLAEIKHARLAMVGFLGFAVQAAVT 218 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 57899999999999999988888765
No 6
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=94.93 E-value=0.0017 Score=55.65 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=23.2
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+||+-.++.|.++
T Consensus 99 ~r~aEl~hGR~AMLa~~G~l~~E~~~ 124 (276)
T 2wsc_3 99 LAYGEIINGRYAMLGAVGAIAPEILG 124 (276)
T ss_dssp HHHHHHHHHTTSCCTTTSTTSCSSCS
T ss_pred HHHHHhhcccchhhhHHHHHHHHHhc
Confidence 37999999999999999988888765
No 7
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=94.29 E-value=0.0061 Score=51.28 Aligned_cols=25 Identities=16% Similarity=0.006 Sum_probs=21.2
Q ss_pred cCchhhHhhcCcchhhHHHHHHHHh
Q 029906 157 FHLPEAELLNGVTDPSFSFSVYLYD 181 (185)
Q Consensus 157 ~hLpeAElLNGRaAMiGF~~a~l~E 181 (185)
..+..+|+.|||+||+||+..++.|
T Consensus 185 ~~~r~~E~~nGRlAM~a~~g~~~~~ 209 (241)
T 2wsc_1 185 EELKVKEIKNGRLALLAFVGFCVQQ 209 (241)
T ss_dssp CCSCTTHHHHHHHHHHHHHSGGGGG
T ss_pred HHHHHhhcccccHHHHHHHHHHHhh
Confidence 4578899999999999999766666
No 8
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=94.28 E-value=0.0085 Score=50.88 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.7
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDAS 183 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Eal 183 (185)
+.+||+.|||.||+|++=.++.|.+
T Consensus 92 ~ReaELkHGRwAMLAvlG~lvpE~l 116 (243)
T 3pl9_A 92 FRECELIHGRWAMLATLGALTVEGL 116 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchhHHHHHHHHHhHHhh
Confidence 4799999999999999998888875
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=93.53 E-value=0.018 Score=49.18 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=23.1
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+.++|+.|||.||+|++-.++.|.++
T Consensus 102 ~r~aElkHGR~AMLA~~G~l~~E~l~ 127 (269)
T 2wsc_2 102 NVQAELVHSRWAMLGAAGIFIPEFLT 127 (269)
T ss_dssp THHHHHHTHHHHTTTTHHHHHHHHHC
T ss_pred HHHHHHhcchHHHHHHHHhHhHHhhc
Confidence 47999999999999999888888764
No 10
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=92.66 E-value=0.028 Score=46.70 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=21.8
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDAS 183 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Eal 183 (185)
+.|||+.+||+||+|++=.++.|.+
T Consensus 61 ~ReaELkHGR~AMLA~~G~lv~E~l 85 (232)
T 2bhw_A 61 NRELEVIHSRWAMLGALGSVFPELL 85 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHhhhhhhhHHHh
Confidence 3799999999999999888877764
No 11
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=88.03 E-value=0.15 Score=42.97 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=22.9
Q ss_pred hccCchhhHhhcCcchhhHHHHHHHHhhcc
Q 029906 155 KRFHLPEAELLNGVTDPSFSFSVYLYDASM 184 (185)
Q Consensus 155 kr~hLpeAElLNGRaAMiGF~~a~l~Ealt 184 (185)
+...+...|+-|||+ ||||+-.++-|.+|
T Consensus 196 ~~~~~k~kELkNGRL-MlAilGf~vQe~vT 224 (251)
T 2wsc_4 196 PTLEAKEKEIANGRL-MLAFLGFIIQHNVT 224 (251)
T ss_dssp SSSSCTTHHHHHHHT-TTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcchh-HHHHHHHHHHHHhc
Confidence 355678899999999 99998776666554
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=87.95 E-value=0.035 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=19.7
Q ss_pred chhhHhhcCcchhhHHHHHHHHhhc
Q 029906 159 LPEAELLNGVTDPSFSFSVYLYDAS 183 (185)
Q Consensus 159 LpeAElLNGRaAMiGF~~a~l~Eal 183 (185)
+.++|+.|||.||++++-.++.|.+
T Consensus 83 ~r~~El~hgR~AMla~~G~~~~e~~ 107 (241)
T 2wsc_1 83 YKESELIHCRWAMLAVPGILVPEAL 107 (241)
T ss_dssp SHHHHHHHHHHHTTTSTTSSSTTCC
T ss_pred HHHHHHhhchhHHhhhhcccchhhc
Confidence 3789999999999998765555543
No 13
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=29.54 E-value=21 Score=26.68 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=16.9
Q ss_pred ccchhhhhHHHHHhhhhhc
Q 029906 112 TDWDAVIDAEARRRKWLEN 130 (185)
Q Consensus 112 ~dWDavIdaE~~rRK~Led 130 (185)
=|||.||.-|....+.+|.
T Consensus 28 gdWD~Lv~lE~~y~~~Ve~ 46 (122)
T 3a7m_A 28 GEWDLLLQQEVSYLQSIET 46 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3899999999999998875
No 14
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=26.87 E-value=28 Score=26.06 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.4
Q ss_pred CCccchhhhhHHHHHhhhhhc
Q 029906 110 GQTDWDAVIDAEARRRKWLEN 130 (185)
Q Consensus 110 g~~dWDavIdaE~~rRK~Led 130 (185)
-.=|||.||+-|.......|.
T Consensus 29 ~~gdWD~Lv~lE~~y~~lVe~ 49 (123)
T 3nkz_A 29 TEGNWDALVDLEMTYLKAVES 49 (123)
T ss_dssp TTSCTTHHHHHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHHHHHHHHH
Confidence 345899999999998887765
No 15
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=24.50 E-value=30 Score=26.20 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.0
Q ss_pred CccchhhhhHHHHHhhhhhc
Q 029906 111 QTDWDAVIDAEARRRKWLEN 130 (185)
Q Consensus 111 ~~dWDavIdaE~~rRK~Led 130 (185)
.=|||.||.-|......+|.
T Consensus 40 ~gdWD~Lv~lE~~y~~lVe~ 59 (126)
T 3h3m_A 40 ASNWDLVLNHGQEYVCLVER 59 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHHHHHHHH
Confidence 34899999999999888775
Done!