BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029908
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
+ A+ AGA++S+D N R LWP+ E ++ A+V+K+S EL++L + D
Sbjct: 154 RRAQAAGAIVSFDLNFRPXLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADAN 213
Query: 62 SALS-LWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALL---C 117
+ + LW +LLLVT +YT++ G V FRV+ D+ AGDAFVG L
Sbjct: 214 AVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGXLYTFA 273
Query: 118 KIVDDQSAI----EDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
+ DD +A+ D + L+FA A GAL+ T++GA A P SE L+L++ +
Sbjct: 274 QQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTAXPXLSEVLSLIQEQS 330
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
+EAG + +D NLR +W + +E E I A + KVS EL L+G+ D +
Sbjct: 169 REAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQD-ARY 227
Query: 65 SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQS 124
L +++LG G T + A RV VDTTGAGDAFVG LL + ++
Sbjct: 228 YLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTL--SRA 285
Query: 125 AIEDEPRLREILKFANACGALSTTKKGAIPALP 157
D L E + ANACGA++ T KGA+ ALP
Sbjct: 286 NCWDHALLAEAISNANACGAMAVTAKGAMTALP 318
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 2 KAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE 61
+ +EAG + +D NLR W + +E E I A + KVS EL L+G+ D
Sbjct: 166 RRXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQD- 224
Query: 62 SALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVD 121
+ L +++LG G T + A RV VDTTGAGDAFVG LL +
Sbjct: 225 ARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTL-- 282
Query: 122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALP 157
++ D L E + ANACGA + T KGA ALP
Sbjct: 283 SRANCWDHALLAEAISNANACGAXAVTAKGAXTALP 318
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 21 LWPSPEEAR-EQIMSIWDKAEVIKVSDVELEFLTGSDKIDDES----ALSLWHPNLKLLL 75
L P+P +A +++S+ D +I ++ E E L+G +++S A +K +L
Sbjct: 164 LNPAPAKALPNELLSLID---IIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVL 220
Query: 76 VTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREI 135
+TLG+ G + TK+ ++A++V +DTT AGD F+GA + ++ Q L +
Sbjct: 221 ITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQD------NLADA 274
Query: 136 LKFANACGALSTTKKGAIPALP 157
+ F N +L+ K GA ++P
Sbjct: 275 IDFGNKASSLTVQKHGAQASIP 296
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
K G ++S+DPN+R PE R+ + + + ++ S+ E+ L+ + +
Sbjct: 158 KANGGVISFDPNIRKEXLDIPE-XRDALHFVLELTDIYXPSEGEVLLLS-PHSTPERAIA 215
Query: 65 SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGA-LLCKIVDDQ 123
+K ++V G G YY+ + + V+++ V+ VD TGAGD F GA + C+ +
Sbjct: 216 GFLEEGVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFD 275
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
+ L++ANACGAL+ T++G E ++R
Sbjct: 276 A--------HRALQYANACGALAVTRRGPXEGTSRLXEIETFIQR 312
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS 65
+ +L+++D NLRL LW EE +++ E IK++D+ K +E L
Sbjct: 152 KGSSLIAFDVNLRLDLWRGQEEEXIKVLE-----ESIKLADIV--------KASEEEVLY 198
Query: 66 LWHPNLK-----LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
L + ++ L +TLG GCR V ++ V +DTTGAGDAF ALL I+
Sbjct: 199 LENQGVEVKGSXLTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGIL 258
Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGA 152
+ L ++ KFAN ALST K+GA
Sbjct: 259 KLKGL-----DLLKLGKFANLVAALSTQKRGA 285
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 5 KEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL 64
+ AG +S+DPNLR LW +PE R+ I + +A+ + E FLTG + + A
Sbjct: 181 RAAGRSVSFDPNLRPTLWATPELXRDAINDLATRADWVLPGXEEGRFLTG-ETTPEGVAR 239
Query: 65 SLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVDDQ 123
KL++V LG G + ++ G V F V + VDT GAGD F ++ ++D
Sbjct: 240 FYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGL 299
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
+ E +K GA + G LPT +E
Sbjct: 300 G-------VPEAVKRGAWIGARAVQVLGDSEGLPTRAE 330
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 4 AKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESA 63
A+E G ++ +DP R LWP ++ + I +A+ +K S + L G D ++
Sbjct: 171 AREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSPENYVK 230
Query: 64 LSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQ 123
L +K +++TLGE G + AF VD TGAGDAF +C ++D
Sbjct: 231 RYL-ELGVKAVILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGY 289
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEAL 163
+ ++ +K N A GA+ +P++ + +
Sbjct: 290 T-------VKRSIKLGNGVAAFKIRGVGALSPVPSKEDII 322
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 23/152 (15%)
Query: 6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS 65
+ +L+++D NLRL LW EE +++ E IK++D+ K +E L
Sbjct: 152 KGSSLIAFDVNLRLDLWRGQEEEXIKVLE-----ESIKLADIV--------KASEEEVLY 198
Query: 66 LWHPNLK-----LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
L + ++ L +TLG G R V ++ V +DTTGAGDAF ALL I+
Sbjct: 199 LENQGVEVKGSXLTAITLGPKGFRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGIL 258
Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGA 152
+ L ++ KFAN ALST K+GA
Sbjct: 259 KLKGL-----DLLKLGKFANLVAALSTQKRGA 285
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 7 AGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE----S 62
A A +++ + L P+P ARE + ++I ++ E E LTG +DE +
Sbjct: 151 AAAKIAHQNKTIVALNPAP--ARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKA 208
Query: 63 ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD 122
A L ++ +L+TLG G V FRV+ VDT AGD F GAL+ +
Sbjct: 209 AQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL--- 265
Query: 123 QSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
+E++P L E ++FA+A A++ T+KGA P++P E A L R
Sbjct: 266 ---LEEKP-LPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 307
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 13 YDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLK 72
+D + R W SPEEA +Q + V + E E G + + + +L ++
Sbjct: 170 FDLDYRPXFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETE-PERAGRALLERGVE 228
Query: 73 LLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRL 132
L +V G G TK V F V ++ GAGDAF GAL ++ + L
Sbjct: 229 LAIVKQGPKGVXAXTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWP-------L 281
Query: 133 REILKFANACGALSTTKKGAIPALPTESEALALLKR 168
++L+FAN GAL ++ A PT E A L +
Sbjct: 282 EKVLRFANTAGALVASRLECSTAXPTTDEVEASLNQ 317
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 12 SYDPNLRLPLWPSPEEAREQIMSIWDKAEV-IKVSDVELEFLTGSDKIDDESALSLWHPN 70
S D N+R LW S E+A+E I+SI K ++ + ++D + + DE+
Sbjct: 160 SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDPDEAYRKYKELG 219
Query: 71 LKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
+K+LL LG G Y + K DA++V D TGAGDA G +
Sbjct: 220 VKVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVS 266
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 8 GALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLT---GSDKID--DES 62
G L +D NLR + +E + + + ++K++D EL ++ G ID D+
Sbjct: 146 GQLKIFDINLRQDFY-----TKEVLRESFKRCNILKINDEELVTISRXFGYPGIDLQDKC 200
Query: 63 ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDD 122
+ L NLK L++T G +G +T + +V DT GAGD+F A I++
Sbjct: 201 WILLAKYNLKXLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNG 260
Query: 123 QSAIEDEPRLREILKFANACGALSTTKKGAIPALPT 158
+S + E K A A T+ GA P LP
Sbjct: 261 KS-------VPEAHKLAVEVSAYVCTQSGAXPELPV 289
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 50 EFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGD 109
EFLT +++A +K ++V LG+ G K+ K F+VK VDTT AGD
Sbjct: 204 EFLT-----VEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGD 258
Query: 110 AFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKR 168
F GA A+ + E + F A A+S T+ GA ++P E A LK
Sbjct: 259 VFNGAFAV-------ALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKN 310
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
M+ AK G +S D N R LW SPEEAR + +++ +S+ E E L G +
Sbjct: 150 MEEAKRRGVRVSLDVNYRQTLW-SPEEARGFLERALPGVDLLFLSEEEAELLFGRV---E 205
Query: 61 ESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIV 120
E+ +L P + L G G + + AF V+ VD GAGDAF L
Sbjct: 206 EALRALSAPEVVL---KRGAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLA--- 259
Query: 121 DDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
A+ P + E L+ AN GA +G P + LLK
Sbjct: 260 ---GAVWGLP-VEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK 302
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 36 WDKAEVIKVSDVELEFLTG----SDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFK 91
+ ++V ++ E E LTG S E+AL L +++++TLG GC +++
Sbjct: 199 YTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEP 258
Query: 92 --GAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTK 149
+ +VK VDTTGAGD+FVGAL + A L ++L +N A+S
Sbjct: 259 EPKHIPTEKVKAVDTTGAGDSFVGALAFYL-----AYYPNLSLEDMLNRSNFIAAVSVQA 313
Query: 150 KGAIPALP 157
G + P
Sbjct: 314 AGTQSSYP 321
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 12 SYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFL---TGSDKI-----DDESA 63
S+D N+RL LW S EEA+ +I+ + +S L+FL T KI D + A
Sbjct: 160 SFDTNIRLKLW-SAEEAKREILKL--------LSKFHLKFLITDTDDSKIILGESDPDKA 210
Query: 64 LSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQ 123
+ +++++ LG G Y K ++V D TGAGDA G L
Sbjct: 211 AKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFL------- 263
Query: 124 SAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLK 167
S + + L +A L+ +G LPT + L+
Sbjct: 264 SLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLR 307
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDES 62
+AG +DP LPL+ R ++ + I V+D E + + DK +DE
Sbjct: 166 QAGVPFIFDPGQGLPLFDGATLRRSIELATY-----IAVNDYEAKLV--CDKTGWSEDEI 218
Query: 63 ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVD 121
A ++ L++T GEHG + + A R + +D TG GDAF G LL
Sbjct: 219 A-----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLL----- 268
Query: 122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
IE + A+ GAL +G PT +E
Sbjct: 269 --YGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAE 306
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 6 EAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI---DDES 62
+AG +DP LPL+ R ++ + I V+D E + + DK +DE
Sbjct: 158 QAGVPFIFDPGQGLPLFDGATLRRSIELATY-----IAVNDYEAKLV--CDKTGWSEDEI 210
Query: 63 ALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLCKIVD 121
A ++ L++T GEHG + + A R + +D TG GDAF G LL
Sbjct: 211 A-----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLL----- 260
Query: 122 DQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESE 161
IE + A+ GAL +G PT +E
Sbjct: 261 --YGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAE 298
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG-----S 55
+ A+ G +++DPNLR LW E E IM + VSD+ L
Sbjct: 171 LAQARATGRTIAFDPNLRPRLWAGTGEMTETIM------QGAAVSDIALPSFEDEAAWFG 224
Query: 56 DKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKG-AVDAFRVKTVDTTGAGDAFVGA 114
D D +A ++ ++V G H + +G + VDTT AGD+F
Sbjct: 225 DAGPDATADRYARAGVRSVVVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAG 284
Query: 115 LLCKIVDDQ 123
LL ++ Q
Sbjct: 285 LLDSVLAGQ 293
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 30 EQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS 89
E++ + + +V V+D E L+G + ++A + K L++ GEHG +T +
Sbjct: 160 EELKKVLARVDVFIVNDSEARLLSGDPNLV-KTARIIREXGPKTLIIKKGEHGALLFTDN 218
Query: 90 FKGAVDAFRVKTV-DTTGAGDAFVGALLCKIVDDQSAIEDEPR 131
A AF ++++ D TGAGD F G + + + E E R
Sbjct: 219 GIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEXR 261
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 48 ELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFR-VKTVDTTG 106
E + LTG + +D E A +K +++ G+ GC V A + +DT G
Sbjct: 201 EAKLLTGKETLD-EIADCFLACGVKTVVIKTGKDGCFIKRGDXTXKVPAVAGITAIDTIG 259
Query: 107 AGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGA 152
AGD F + +A+ + LRE +FANA A+S GA
Sbjct: 260 AGDNFASGFI-------AALLEGKNLRECARFANATAAISVLSVGA 298
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 1 MKAAKEAGALLSYDPNLRLPLW--PSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKI 58
++ AK G +S+D N R LW + + A +Q++ + D ++ V F S+
Sbjct: 175 IREAKRNGIKISFDMNYRAKLWELEAAKRAYQQLLPLVDYCSAGQMDAVAF-FEISSETT 233
Query: 59 DDESALSLWHPNLKLL------LVTLGEH--GCRYYTKSFKGAVDAFRVK-TVDTTGAGD 109
D A+ +PN++L +++ H +T+ + + + VD G GD
Sbjct: 234 DYYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGD 293
Query: 110 AFVGALLCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAI 153
A+ A+L I+ E R E +KFA A L + G I
Sbjct: 294 AYTAAVLHGIL-------SEWRPDETVKFATAAAGLKHSIHGDI 330
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 1 MKAAKEA--GALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG--SD 56
+K AK+A L+S+DP LP + ++E ++ I + + ++ E E + +
Sbjct: 145 LKCAKKAYGNNLVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNF 199
Query: 57 KIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGAL 115
+IDD + + L+VT G G YTK K + + K +D TGAGD++
Sbjct: 200 EIDD------YLERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGF 253
Query: 116 LCKIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIPALPTESEALALLKRSTI 171
L V L + A + KG LPT + + L++ I
Sbjct: 254 LSAYVKGYD-------LEKCGLIGAATASFVVEAKGCQTNLPTWDKVVERLEKHRI 302
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 58 IDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLC 117
I +E + W ++TLG G RY V A V VDT GAGD F G L
Sbjct: 197 IANEHEANDWPSPPTHFVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVLAA 256
Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKG 151
+ + + RLR L+ A A GAL+T G
Sbjct: 257 NWPRNPGSPAE--RLRA-LRRACAAGALATLVSG 287
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 72 KLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPR 131
K ++V+LG G V VK+ T GAGD+ VGA+ K+ ++ S
Sbjct: 219 KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS------- 271
Query: 132 LREILKFANACGALSTTKKG 151
L E+++F A G+ +T +G
Sbjct: 272 LEEMVRFGVAAGSAATLNQG 291
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 72 KLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPR 131
K ++V+LG G V VK+ T GAGD+ VGA+ K+ ++ S
Sbjct: 219 KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS------- 271
Query: 132 LREILKFANACGALSTTKKG 151
L E+++F A G+ +T +G
Sbjct: 272 LEEMVRFGVAAGSAATLNQG 291
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG------ 54
+K A E G +S D N R LW + EEA++ + + +V+ ++ ++E + G
Sbjct: 163 LKVANEKGVTVSCDLNYRARLW-TKEEAQKVXIPFXEYVDVLIANEEDIEKVLGISVEGL 221
Query: 55 ---SDKIDDESALSLWHP-----NLKLLLVTLGEH--------GCRYYTKSFKGAVDAFR 98
+ K++ E+ + N K + +TL E + + +
Sbjct: 222 DLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVXVFENGQPHFSNRYE 281
Query: 99 VKTVDTTGAGDAFVGALL 116
+ VD GAGD+F GAL+
Sbjct: 282 IHIVDRVGAGDSFAGALI 299
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 94 VDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIE 127
+D + + +DT GAGDAFVG L ++V D+ E
Sbjct: 285 LDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTE 318
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 59 DDESALSLWHPNLKLLLVTLGEHGC-------RYYTKSFKGAVDAFRVK-TVDTTGAGDA 110
D E AL+ + K+ VT E+G RYY V+A R++ VDTTGAGD
Sbjct: 249 DFEEALNRIAADCKIAAVTXSENGAVILKGRERYY-------VNAIRIREVVDTTGAGDL 301
Query: 111 FVGALLCKIVDDQSAIEDEPRL 132
F L +S +ED +L
Sbjct: 302 FASGFLYGYTQGRS-LEDCGKL 322
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 33/134 (24%)
Query: 1 MKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDD 60
++ + G + +D N R LW S EE ++ + ++ +D+ FLT +DD
Sbjct: 155 LRECRAKGGKVIFDNNYRPRLWASKEETQQVYQ------QXLECTDI--AFLT----LDD 202
Query: 61 ESALSLWHP-----------NLKLLLVTLGEHGCRYYTKSFKG-------AVDAFRVKTV 102
E AL P +K ++V G C S G AV + K +
Sbjct: 203 EDALWGQQPVEDVIARTHNAGVKEVVVKRGADSCLV---SIAGEALVDVPAVKLPKEKVI 259
Query: 103 DTTGAGDAFVGALL 116
DTT AGD+F L
Sbjct: 260 DTTAAGDSFSAGYL 273
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 74 LLVTLGEHG--CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPR 131
L+V+LG G C + K ++ V +V+ + TGAGD FVGA + + +
Sbjct: 218 LVVSLGAKGSICAHNGKLYQ--VIPPKVQERNDTGAGDVFVGAFIAGLAXNXP------- 268
Query: 132 LREILKFANACGA 144
+ E LK A C A
Sbjct: 269 ITETLKVATGCSA 281
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 74 LLVTLGEHG--CRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPR 131
L+V+LG G C + K ++ V +V+ + TGAGD FVGA + + +
Sbjct: 218 LVVSLGAKGSICAHNGKLYQ--VIPPKVQERNDTGAGDVFVGAFIAGLAMNMP------- 268
Query: 132 LREILKFANACGA 144
+ E LK A C A
Sbjct: 269 ITETLKVATGCSA 281
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 100 KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC 142
K VDT GAGDAFVG L A+ +++ + NAC
Sbjct: 329 KIVDTNGAGDAFVGGFL-------YALSQGKTVKQCIMCGNAC 364
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 100 KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC 142
K VDT GAGDAFVG L A+ +++ + NAC
Sbjct: 309 KIVDTNGAGDAFVGGFL-------YALSQGKTVKQCIMCGNAC 344
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 100 KTVDTTGAGDAFVGALLCKIVDDQS 124
+ VDT GAGDAFVG L +++ ++
Sbjct: 308 QMVDTNGAGDAFVGGFLAQLLQSRT 332
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 100 KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC 142
K VDT GAGDAFVG L + ++ +++ + NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKT-------VKQCIMCGNAC 344
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 100 KTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANAC 142
K VDT GAGDAFVG L + ++ +++ + NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKT-------VKQCIMCGNAC 344
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 71 LKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEP 130
+K + ++L G Y G + A V + TGAGD+FV L ++ IED
Sbjct: 219 IKKVFISLDADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGLGYGYX-NKXPIED-- 275
Query: 131 RLREILKFANACGALSTTKKGAIPALPTESEALALLKRST 170
I+KFA ++ + + I LA L+++T
Sbjct: 276 ----IVKFAXTXSNITISHEETIHPDXALDTVLAKLEKTT 311
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 59 DDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFRV-KTVDTTGAGDAFVGALLC 117
D + AL L + KL VTL E G + + V A + + VDTTGAGD + L
Sbjct: 229 DFDRALELLARDCKLAAVTLSEEGSVVVRGAERVRVGASVLEQVVDTTGAGDLYAAGFLF 288
Query: 118 KIVDDQSAIEDEPRLREILKFANACGALSTTKKGAIP--ALPTESEALALL 166
+S L E K N + + G P +L T + AL+
Sbjct: 289 GYTSGRS-------LEECSKLGNLAAGIVIGQIGPRPLVSLATAARQAALV 332
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 60 DESALSLWHP-NLKLLLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAF 111
+ES L P +K L++T G G + + A + +DTTGAGD F
Sbjct: 184 NESEAELLQPYGVKTLVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTF 236
>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
Bacillus Thuringiensis At 2.5 Angstroms Resolution
Length = 584
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 7 AGALLSYDPNLRLPLWPSPEEAR---EQIMSIWDKAEVIKVSDVELEFLTG-SDKIDDE- 61
GAL+S+ N +WPS + + EQ+ ++ D+ + L L G + ++D
Sbjct: 25 GGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYV 84
Query: 62 SALSLWHPN 70
SALS W N
Sbjct: 85 SALSSWQKN 93
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 72 KLLLVTLGEHGCRYYTKSFKGAVDAFRV------KTVDTTGAGDAFVGALLCKIV 120
+L+++T G++ YT S + F V + +DT GAGDAF + +
Sbjct: 278 RLVIITRGKNPL-LYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYI 331
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 72 KLLLVTLGEHGCRYYTKSFKGAVDAFRV------KTVDTTGAGDAFVGALL 116
+L+++T G++ YT S + F V + +DT GAGDAF +
Sbjct: 280 RLVIITRGKNPL-LYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFI 329
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 72 KLLLVTLGEHGCRYYTKSFKGAVDAFRV------KTVDTTGAGDAFVGALL 116
+L+++T G++ YT S + F V + +DT GAGDAF +
Sbjct: 280 RLVIITRGKNPL-LYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFI 329
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 74 LLVTLGEHGCRYYTKSFKGAVDAFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLR 133
++V+LG G Y K + K V+T G+GD+ V ++ I S +
Sbjct: 214 VIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLS-------IE 266
Query: 134 EILKFANACG 143
+ + A ACG
Sbjct: 267 KAFQQAVACG 276
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 30 EQIMSIWDKAEVIKVSDVELEFLTGSDKIDDE-SALSLWHPNLKLLLVTLGEHGCRYYTK 88
E + + A I S+ LTG + + D L +P + VT G GC ++T+
Sbjct: 195 ETLEGLAPAATHIVFSEPAATRLTGLETVKDXLPVLHARYPQ-TFIAVTAGPAGC-WWTE 252
Query: 89 SFKGAVD---AFRVKTVDTTGAGDAFVGALLCKIVDDQSAIEDEPRLREILKFANACGAL 145
+ V +V+ VDT AGD F G + + R ++ ++ AL
Sbjct: 253 ADDPTVHFQTTXQVEAVDTLAAGDIFHGTFALAXAEGXQS-------RAAVRLSSVAAAL 305
Query: 146 STTKKGAIPALPTESE 161
T G PT E
Sbjct: 306 KCTVFGGRIGAPTREE 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,195,558
Number of Sequences: 62578
Number of extensions: 191598
Number of successful extensions: 560
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 49
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)