Query 029909
Match_columns 185
No_of_seqs 132 out of 174
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 5.1E-48 1.1E-52 346.2 8.8 130 55-184 43-174 (355)
2 PF01167 Tub: Tub family; Int 99.8 8.4E-21 1.8E-25 162.1 2.2 63 121-183 1-64 (246)
3 PF12937 F-box-like: F-box-lik 98.3 1.1E-07 2.5E-12 61.3 0.5 36 57-100 1-36 (47)
4 PLN03215 ascorbic acid mannose 98.1 3.6E-06 7.8E-11 77.1 5.9 41 55-102 2-42 (373)
5 PF00646 F-box: F-box domain; 98.1 5.9E-07 1.3E-11 57.3 -0.7 39 56-102 2-40 (48)
6 smart00256 FBOX A Receptor for 98.0 2.2E-06 4.8E-11 52.1 0.5 34 60-101 1-34 (41)
7 KOG2997 F-box protein FBX9 [Ge 97.2 0.00021 4.6E-09 65.7 3.0 98 54-160 101-237 (366)
8 KOG2120 SCF ubiquitin ligase, 90.0 0.073 1.6E-06 49.8 -0.6 62 56-125 97-160 (419)
9 KOG0274 Cdc4 and related F-box 52.0 3.4 7.4E-05 39.7 -1.0 42 53-102 104-145 (537)
10 KOG4341 F-box protein containi 45.0 11 0.00023 36.7 1.1 52 59-119 74-125 (483)
11 PF09372 PRANC: PRANC domain; 30.3 34 0.00073 25.0 1.6 20 54-73 69-88 (97)
12 PHA02875 ankyrin repeat protei 29.8 39 0.00084 29.6 2.1 22 53-74 383-404 (413)
13 PF14642 FAM47: FAM47 family 29.0 32 0.0007 31.0 1.5 37 58-104 139-178 (258)
14 PF10504 DUF2452: Protein of u 27.0 62 0.0013 27.3 2.8 41 128-175 84-127 (159)
15 PF01690 PLRV_ORF5: Potato lea 26.2 82 0.0018 30.7 3.8 34 138-176 182-215 (465)
16 PRK13890 conjugal transfer pro 26.2 83 0.0018 24.4 3.2 35 57-104 84-118 (120)
17 PF13013 F-box-like_2: F-box-l 25.4 34 0.00073 26.8 0.9 47 56-110 21-70 (109)
18 PF04367 DUF502: Protein of un 24.6 2.8E+02 0.006 21.0 5.7 69 64-150 26-104 (108)
19 PHA03100 ankyrin repeat protei 21.8 49 0.0011 29.3 1.3 22 53-74 444-465 (480)
20 PF10711 DUF2513: Hypothetical 21.7 76 0.0017 23.7 2.2 19 60-78 2-20 (102)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=5.1e-48 Score=346.19 Aligned_cols=130 Identities=43% Similarity=0.691 Sum_probs=126.7
Q ss_pred CCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHhhcCCCCCCcccccccccCCCCCCCCeeeEEEe
Q 029909 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR 134 (185)
Q Consensus 55 ~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~keiv~~pe~sgk~tfP~sLkqPGPR~~~vQCfIkR 134 (185)
+.|++||||+|+|||+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||||+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEeecCccccc--CCCeEEEeeecCCCCCcccceeeccccccccC
Q 029909 135 NKKTSTFYLYLALTPFLI--SLGQTLQFTTVGRLTMVQNPQAAGVVDDLQAS 184 (185)
Q Consensus 135 dk~~~tYyLyL~lt~~~~--d~GKFLLAaRKrRkskTSNYlISld~~DL~~~ 184 (185)
||+|++||||+++.+++. |+|||||||||+|++||+|||||+|++||+.+
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~ 174 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRG 174 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccC
Confidence 999999999999999864 78999999999999999999999999999864
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=99.80 E-value=8.4e-21 Score=162.10 Aligned_cols=63 Identities=33% Similarity=0.373 Sum_probs=51.6
Q ss_pred CCCCCCCeeeEEEecCCCceeEEeecCccccc-CCCeEEEeeecCCCCCcccceeecccccccc
Q 029909 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPFLI-SLGQTLQFTTVGRLTMVQNPQAAGVVDDLQA 183 (185)
Q Consensus 121 PGPR~~~vQCfIkRdk~~~tYyLyL~lt~~~~-d~GKFLLAaRKrRkskTSNYlISld~~DL~~ 183 (185)
|||+|++|||||+|||+|++|+||++++..+. ++|+|||||||+|+++||||+||+|++||+.
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr 64 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSR 64 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCT
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCcccc
Confidence 89999999999999999997777766666544 8999999999999999999999999999865
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.34 E-value=1.1e-07 Score=61.29 Aligned_cols=36 Identities=31% Similarity=0.635 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHH
Q 029909 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (185)
Q Consensus 57 Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~k 100 (185)
|..||+|+|.+|+..++ . +|+..|+.|||+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~-------~-~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-------P-RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--------H-HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCC-------H-HHHHHHHHHHHHHHHHHC
Confidence 78999999999999993 3 379999999999999984
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.15 E-value=3.6e-06 Score=77.12 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHh
Q 029909 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (185)
Q Consensus 55 ~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~kei 102 (185)
..|+.||+|||..|..|| |++-|++..++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 469999999999999999 99999999999999999977653
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.05 E-value=5.9e-07 Score=57.28 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHh
Q 029909 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (185)
Q Consensus 56 ~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~kei 102 (185)
.|.+||+|++.+|+.+++. +++++|+.||++|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 4789999999999999944 45999999999999998764
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.95 E-value=2.2e-06 Score=52.09 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHH
Q 029909 60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (185)
Q Consensus 60 LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~ke 101 (185)
||+|++.+|+.++ +. +++.+|+.||++|+.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 55 7899999999999998854
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.23 E-value=0.00021 Score=65.70 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred CCCCCC---CCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHhh-------cCCCCCC-cccc--------
Q 029909 54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-------KSPFLSG-KITF-------- 114 (185)
Q Consensus 54 ~~~Wa~---LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~keiv-------~~pe~sg-k~tf-------- 114 (185)
|++|-+ ||+|+|-.||+++-.+- =.-++.+.||+|||.|+-.+++=. +.=+.++ ++..
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 677866 99999999999994321 123567899999999876664311 1111111 1111
Q ss_pred ----cccccCCCCCCCCeeeEEEec---CCCc-------------eeEEeecCcccccCCCeEEEe
Q 029909 115 ----PSCLKQPGPREFPHQCLIRRN---KKTS-------------TFYLYLALTPFLISLGQTLQF 160 (185)
Q Consensus 115 ----P~sLkqPGPR~~~vQCfIkRd---k~~~-------------tYyLyL~lt~~~~d~GKFLLA 160 (185)
-+.|++ ||--.--|||.++ |.|. |||.|+- +.++|+||+-
T Consensus 178 ~SWR~Mfl~R--pRvrFdG~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiR----FyP~G~~l~~ 237 (366)
T KOG2997|consen 178 TSWREMFLER--PRVRFDGVYISKTTYIRQGENSLDSFYRPVHLVEYYRYIR----FYPDGHVLML 237 (366)
T ss_pred hHHHHHHhhC--cceeecceEEEEEeEeecCchhhhhhcCcceeeEEEEEEE----ecCCCcEEEE
Confidence 124678 6666777999887 2222 8999998 5678888864
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.073 Score=49.78 Aligned_cols=62 Identities=26% Similarity=0.433 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHhh--cCCCCCCcccccccccCCCCCC
Q 029909 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV--KSPFLSGKITFPSCLKQPGPRE 125 (185)
Q Consensus 56 ~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~keiv--~~pe~sgk~tfP~sLkqPGPR~ 125 (185)
.|..||.|+|.+|+.-+ ..++....+.||++|..++.+-- ...+..||.--|..+-|=--|+
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg 160 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG 160 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC
Confidence 39999999999999877 56789999999999999887533 4567778877888775544444
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=52.05 E-value=3.4 Score=39.74 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHh
Q 029909 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~kei 102 (185)
+..-=..||.||.--|+.-+ +. ++...|++||+.|+.++..-
T Consensus 104 ~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred ccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhcc
Confidence 55566789999999999999 55 67999999999999987543
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=44.98 E-value=11 Score=36.69 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHhhcCCCCCCccccccccc
Q 029909 59 GLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119 (185)
Q Consensus 59 ~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~keiv~~pe~sgk~tfP~sLk 119 (185)
.|||||+.-|+.-|+ + +..--||.||+-|-..+.+.+.=. .=.-.|||.-+.
T Consensus 74 ~LPpEl~lkvFS~LD----t----ksl~r~a~~c~~~n~~AlD~~~~q-~idL~t~~rDv~ 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD----T----KSLCRAAQCCTMWNKLALDGSCWQ-HIDLFTFQRDVD 125 (483)
T ss_pred cCCHHHHHHHHHHHh----H----HHHHHHHHHHHHhhhhhhccccce-eeehhcchhcCC
Confidence 599999999999993 3 345669999999999988877321 112256765554
No 11
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=30.32 E-value=34 Score=25.01 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.8
Q ss_pred CCCCCCCCHHHHHHHHhhhh
Q 029909 54 SGSWAGLLPELLGEIIRRVE 73 (185)
Q Consensus 54 ~~~Wa~LPpELL~dIi~Rve 73 (185)
++.|..||.|+-..|+..|.
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~ 88 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLS 88 (97)
T ss_pred CCchhhCCHHHHHHHHHcCC
Confidence 47899999999999998874
No 12
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.76 E-value=39 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHHhhhhc
Q 029909 53 SSGSWAGLLPELLGEIIRRVET 74 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~ 74 (185)
.++.|..||+|+-..|+..|..
T Consensus 383 ~~~~w~~LP~Eik~~Il~~l~~ 404 (413)
T PHA02875 383 DESKWNILPHEIKYLILEKIGN 404 (413)
T ss_pred cccchhcCcHHHHHHHHHHhcc
Confidence 4678999999999999999844
No 13
>PF14642 FAM47: FAM47 family
Probab=29.00 E-value=32 Score=31.03 Aligned_cols=37 Identities=24% Similarity=0.595 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHhhhhcc---CCCCCCccceeeecchhhhHHHHHHHhhc
Q 029909 58 AGLLPELLGEIIRRVETT---EDSWPHRQNVVACACVCKRWREITKDIVK 104 (185)
Q Consensus 58 a~LPpELL~dIi~Rve~s---e~~wP~rk~vVacA~VCr~WR~i~keiv~ 104 (185)
..||||||.+|+.=|+-. |+.| +-|.-++..+++..+
T Consensus 139 E~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept~ 178 (258)
T PF14642_consen 139 EDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPTE 178 (258)
T ss_pred ccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCcc
Confidence 459999999999988643 5666 457777777776643
No 14
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=26.98 E-value=62 Score=27.35 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=20.6
Q ss_pred eeeEEEecCCCceeEEeecCcccccCCC-eEE--EeeecCCCCCcccceee
Q 029909 128 HQCLIRRNKKTSTFYLYLALTPFLISLG-QTL--QFTTVGRLTMVQNPQAA 175 (185)
Q Consensus 128 vQCfIkRdk~~~tYyLyL~lt~~~~d~G-KFL--LAaRKrRkskTSNYlIS 175 (185)
.+|-++. .-|.+||||-. ++| +|| |+-.-+..+.--+|+-|
T Consensus 84 A~cnF~p-ipG~iYhLY~r------~~G~~ylSmisP~EWg~~~p~~flGs 127 (159)
T PF10504_consen 84 AKCNFEP-IPGQIYHLYRR------ENGQDYLSMISPEEWGGSCPHEFLGS 127 (159)
T ss_pred cccCcee-cCCCEEEEEEC------CCCCEEEEeeCHHHhCCCCCcCEEEE
Confidence 3444444 55678999953 344 332 33344444444455544
No 15
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=26.24 E-value=82 Score=30.69 Aligned_cols=34 Identities=15% Similarity=-0.128 Sum_probs=27.5
Q ss_pred CceeEEeecCcccccCCCeEEEeeecCCCCCcccceeec
Q 029909 138 TSTFYLYLALTPFLISLGQTLQFTTVGRLTMVQNPQAAG 176 (185)
Q Consensus 138 ~~tYyLyL~lt~~~~d~GKFLLAaRKrRkskTSNYlISl 176 (185)
...|||--. .++|.|+|-|=+..|+--=||.+|-
T Consensus 182 ~~SFhl~~~-----~~~~~f~l~aPpi~K~~kYNY~VSY 215 (465)
T PF01690_consen 182 TISFHLEAT-----GDDASFFLVAPPIQKTSKYNYVVSY 215 (465)
T ss_pred eEEEEEEec-----CCCceEEEecCCcccccccceEEEe
Confidence 336766643 4789999999999999999999884
No 16
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=26.20 E-value=83 Score=24.36 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHhhc
Q 029909 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVK 104 (185)
Q Consensus 57 Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~keiv~ 104 (185)
...+||.+.+ ++.++ |.. .|.|.|.|-+-++.+++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~-----PA~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEH-----QAFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCc-----cHHHHHHHHHHHHHHHc
Confidence 4578998665 88888 444 47899999998888774
No 17
>PF13013 F-box-like_2: F-box-like domain
Probab=25.38 E-value=34 Score=26.84 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhh---hHHHHHHHhhcCCCCCC
Q 029909 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCK---RWREITKDIVKSPFLSG 110 (185)
Q Consensus 56 ~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr---~WR~i~keiv~~pe~sg 110 (185)
+=-+||.|||..|+..-.. .+..+.-..|+ .||......+..|+.|-
T Consensus 21 tl~DLP~ELl~~I~~~C~~--------~~l~~l~~~~~~~r~~r~~~~~~L~~p~~c~ 70 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCND--------PILLALSRTCRAYRSWRDHIWYLLPKPQSCT 70 (109)
T ss_pred chhhChHHHHHHHHhhcCc--------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3567999999999998733 22333334444 56666555556666654
No 18
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=24.55 E-value=2.8e+02 Score=20.96 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHhhcCCCCCCcccc--cccccCCCCCCCCeeeEEEecCCC---
Q 029909 64 LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITF--PSCLKQPGPREFPHQCLIRRNKKT--- 138 (185)
Q Consensus 64 LL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~keiv~~pe~sgk~tf--P~sLkqPGPR~~~vQCfIkRdk~~--- 138 (185)
.+..++.|+ |-- +++....|+++..-.-..+-.| |+.+.-|++ +.-+-.|+.++...
T Consensus 26 ~~e~ll~ri-------P~v----------~~iY~~~k~~~~~~~~~~~~~f~~vVlV~~p~~-g~~~igFvT~~~~~~~~ 87 (108)
T PF04367_consen 26 WLERLLQRI-------PLV----------KSIYSSIKQLVESFSGDKKKSFKKVVLVEFPRP-GMYVIGFVTGEDPGELP 87 (108)
T ss_pred HHHHHHHHC-------Cch----------HHHHHHHHHHHHHHhhcccccCCeEEEEEecCC-CcEEEEEEeccCcchhh
Confidence 455677777 765 5677777777755433333334 888888766 67788999998665
Q ss_pred -----ceeEEeecCccc
Q 029909 139 -----STFYLYLALTPF 150 (185)
Q Consensus 139 -----~tYyLyL~lt~~ 150 (185)
--+-+|+..+|.
T Consensus 88 ~~~~~~~v~VfvPtsPn 104 (108)
T PF04367_consen 88 GKTGEEMVAVFVPTSPN 104 (108)
T ss_pred ccCCCCEEEEEeCCCCC
Confidence 367788887764
No 19
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.77 E-value=49 Score=29.34 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCCCCCCCCHHHHHHHHhhhhc
Q 029909 53 SSGSWAGLLPELLGEIIRRVET 74 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~ 74 (185)
.++.|..||+|+...|+..|..
T Consensus 444 ~~~~w~~lP~Eik~~Il~~l~~ 465 (480)
T PHA03100 444 KNTYWNILPIEIKYKILEYLSN 465 (480)
T ss_pred cCCchhhCcHHHHHHHHHhCCH
Confidence 3568999999999999999843
No 20
>PF10711 DUF2513: Hypothetical protein (DUF2513); InterPro: IPR019650 The function of this family is not known.
Probab=21.75 E-value=76 Score=23.70 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCHHHHHHHHhhhhccCCC
Q 029909 60 LLPELLGEIIRRVETTEDS 78 (185)
Q Consensus 60 LPpELL~dIi~Rve~se~~ 78 (185)
+.+||+|+|+-.+|+.+..
T Consensus 2 rd~DlIR~iLl~iE~~~~~ 20 (102)
T PF10711_consen 2 RDMDLIRDILLEIEENPDP 20 (102)
T ss_pred CCHHHHHHHHHHHHcCCCc
Confidence 6789999999999997653
Done!