Query 029909
Match_columns 185
No_of_seqs 132 out of 174
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5n_A Tubby-related protein 1 99.8 2.9E-21 9.8E-26 164.5 6.9 62 117-183 4-71 (246)
2 2fim_A Tubby related protein 1 99.8 6.2E-21 2.1E-25 165.0 7.2 62 117-183 28-95 (276)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.6 1.2E-08 4.2E-13 65.9 1.7 40 53-100 5-44 (53)
4 2ast_B S-phase kinase-associat 97.8 5.5E-06 1.9E-10 66.5 1.5 40 53-100 5-44 (336)
5 2p1m_B Transport inhibitor res 97.7 8.7E-06 3E-10 70.0 0.8 42 53-101 2-43 (594)
6 2e31_A FBS1, F-box only protei 97.6 1.5E-05 5.2E-10 69.3 1.9 40 54-101 48-88 (297)
7 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.00023 8E-09 58.5 1.3 41 53-101 15-55 (445)
8 3v7d_B Cell division control p 96.9 0.00011 3.8E-09 60.2 -1.1 41 53-101 11-51 (464)
9 1p22_A F-BOX/WD-repeat protein 96.4 0.0007 2.4E-08 55.8 0.6 41 53-101 7-51 (435)
10 3ogk_B Coronatine-insensitive 96.2 0.00097 3.3E-08 57.4 0.7 38 57-101 13-50 (592)
11 3l2o_B F-box only protein 4; s 96.2 0.00052 1.8E-08 60.8 -1.1 39 56-102 4-42 (312)
12 3o27_A Putative uncharacterize 42.6 24 0.00083 25.1 3.5 50 119-168 1-67 (68)
No 1
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=99.83 E-value=2.9e-21 Score=164.48 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=53.0
Q ss_pred cccCCCCCCCCeeeEEEecCCCc------eeEEeecCcccccCCCeEEEeeecCCCCCcccceeecccccccc
Q 029909 117 CLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPFLISLGQTLQFTTVGRLTMVQNPQAAGVVDDLQA 183 (185)
Q Consensus 117 sLkqPGPR~~~vQCfIkRdk~~~------tYyLyL~lt~~~~d~GKFLLAaRKrRkskTSNYlISld~~DL~~ 183 (185)
.|+||||+|++|||||+|||+|+ +||||++ .++++|||||||+|+++||||+||+|++||+.
T Consensus 4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr 71 (246)
T 3c5n_A 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSR 71 (246)
T ss_dssp GGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC---
T ss_pred HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCcccccc
Confidence 38999999999999999999985 8999987 56788999999999999999999999999974
No 2
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=99.82 E-value=6.2e-21 Score=165.00 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=53.7
Q ss_pred cccCCCCCCCCeeeEEEecCCCc------eeEEeecCcccccCCCeEEEeeecCCCCCcccceeecccccccc
Q 029909 117 CLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPFLISLGQTLQFTTVGRLTMVQNPQAAGVVDDLQA 183 (185)
Q Consensus 117 sLkqPGPR~~~vQCfIkRdk~~~------tYyLyL~lt~~~~d~GKFLLAaRKrRkskTSNYlISld~~DL~~ 183 (185)
.|+||||+|.++||||+|||+|+ +|||||+ .++|+|||||||+|+++|+||+||+|++||+.
T Consensus 28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr 95 (276)
T 2fim_A 28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSR 95 (276)
T ss_dssp GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC---
T ss_pred HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhccc
Confidence 49999999999999999999985 9999997 57899999999999999999999999999974
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.59 E-value=1.2e-08 Score=65.87 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=33.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHH
Q 029909 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~k 100 (185)
++..|++||+|+|..|+.++ | .++++.|+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 4 3689999999999999875
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.79 E-value=5.5e-06 Score=66.52 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=34.3
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHH
Q 029909 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~k 100 (185)
++..|.+||+|+|..|+.++ +.+ +++.|+.|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 45789999999999999999 444 78999999999999984
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.66 E-value=8.7e-06 Score=70.00 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHH
Q 029909 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~ke 101 (185)
+.+.|+.||+|+|..|+.+| |..+++++|+.|||+|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 8778999999999999999433
No 6
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.63 E-value=1.5e-05 Score=69.34 Aligned_cols=40 Identities=33% Similarity=0.628 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHhhhhccCCCCCCcccee-eecchhhhHHHHHHH
Q 029909 54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD 101 (185)
Q Consensus 54 ~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vV-acA~VCr~WR~i~ke 101 (185)
......||+|||.+||.|| |.+ +++ .|++|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence 3467899999999999999 774 788 999999999998754
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.91 E-value=0.00023 Score=58.51 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHH
Q 029909 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~ke 101 (185)
..+-.+.||+|++..|+..| + -++++.|+.|||+|+.++.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHTC
T ss_pred cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcCc
Confidence 45678999999999999999 3 36799999999999998753
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.85 E-value=0.00011 Score=60.21 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHH
Q 029909 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (185)
Q Consensus 53 ~~~~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~ke 101 (185)
+.+-...||+|+|..|+..| |. ++++.|+.|||.|+.++.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 45668889999999999999 44 4899999999999998865
No 9
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.37 E-value=0.0007 Score=55.84 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=33.8
Q ss_pred CCCCCCCCCHH----HHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHH
Q 029909 53 SSGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (185)
Q Consensus 53 ~~~~Wa~LPpE----LL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~ke 101 (185)
+.+--+.||+| |+..|+..|+. +++..|+.|||+|+.++.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 34445679999 99999999943 6789999999999988854
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.23 E-value=0.00097 Score=57.44 Aligned_cols=38 Identities=13% Similarity=0.485 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHH
Q 029909 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (185)
Q Consensus 57 Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~ke 101 (185)
...||+|+|..|+.+| +..+++++|+.|||+|+.+...
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhhc
Confidence 4579999999999999 5568899999999999998543
No 11
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.00052 Score=60.85 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCCccceeeecchhhhHHHHHHHh
Q 029909 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (185)
Q Consensus 56 ~Wa~LPpELL~dIi~Rve~se~~wP~rk~vVacA~VCr~WR~i~kei 102 (185)
-|.+||.|++..|+..|+. +|+..||.|||.||.++.+=
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTCH
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhccc
Confidence 3678999999999999943 57999999999999998763
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=42.61 E-value=24 Score=25.12 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=27.7
Q ss_pred cCCCCCC-CCeeeEEEecCCCc-eeEEeec--------Cccc-----ccC--CCeEEEeeecCCCCC
Q 029909 119 KQPGPRE-FPHQCLIRRNKKTS-TFYLYLA--------LTPF-----LIS--LGQTLQFTTVGRLTM 168 (185)
Q Consensus 119 kqPGPR~-~~vQCfIkRdk~~~-tYyLyL~--------lt~~-----~~d--~GKFLLAaRKrRksk 168 (185)
++||-|. ..|+=+|.+--+|+ |||+.+. ++.. ..| +|.+.|+.++-||-|
T Consensus 1 ~~~~~~~~~~~kp~~~kgg~g~etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~k 67 (68)
T 3o27_A 1 MRPGIRKLVVLNPRAYKGGSGHTTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKELK 67 (68)
T ss_dssp ---CCCCCCEECCEEC-----CCCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGGC
T ss_pred CCCCceEEEEEeeeeeeCCCCceEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhcc
Confidence 4677765 45566666655544 8999863 3332 123 788999998888765
Done!