Query 029910
Match_columns 185
No_of_seqs 137 out of 1532
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 2E-34 4.4E-39 240.8 12.9 150 7-185 249-400 (400)
2 KOG0331 ATP-dependent RNA heli 100.0 1.7E-30 3.7E-35 233.3 14.1 147 6-182 324-472 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 1.5E-30 3.2E-35 224.7 13.0 141 8-181 288-430 (476)
4 COG0513 SrmB Superfamily II DN 100.0 8.9E-29 1.9E-33 224.8 15.9 143 4-175 252-398 (513)
5 KOG0326 ATP-dependent RNA heli 100.0 3.1E-29 6.7E-34 212.7 11.0 151 4-183 302-454 (459)
6 PRK04837 ATP-dependent RNA hel 100.0 2.1E-28 4.5E-33 216.8 14.6 152 4-184 235-388 (423)
7 KOG0333 U5 snRNP-like RNA heli 100.0 3.3E-28 7.3E-33 216.4 14.9 139 3-170 496-636 (673)
8 KOG0340 ATP-dependent RNA heli 100.0 3.4E-28 7.4E-33 208.2 13.7 144 7-180 238-383 (442)
9 PRK10590 ATP-dependent RNA hel 99.9 1.5E-26 3.3E-31 207.1 17.0 145 4-177 225-371 (456)
10 PTZ00110 helicase; Provisional 99.9 7.9E-27 1.7E-31 213.3 15.1 132 24-183 376-509 (545)
11 PRK11776 ATP-dependent RNA hel 99.9 2.6E-26 5.6E-31 205.4 16.9 143 7-178 225-369 (460)
12 PRK04537 ATP-dependent RNA hel 99.9 3.4E-26 7.5E-31 210.2 17.3 145 6-179 239-385 (572)
13 KOG0332 ATP-dependent RNA heli 99.9 4.8E-26 1E-30 196.1 14.2 129 23-179 328-465 (477)
14 PRK11192 ATP-dependent RNA hel 99.9 1.5E-25 3.2E-30 198.9 17.0 140 8-176 229-370 (434)
15 PRK01297 ATP-dependent RNA hel 99.9 1.7E-25 3.7E-30 201.0 17.4 139 8-175 319-459 (475)
16 PLN00206 DEAD-box ATP-dependen 99.9 9.8E-26 2.1E-30 205.0 15.4 132 25-183 367-500 (518)
17 PTZ00424 helicase 45; Provisio 99.9 1.3E-25 2.8E-30 196.4 15.4 148 9-185 252-401 (401)
18 PRK11634 ATP-dependent RNA hel 99.9 1.6E-25 3.5E-30 207.7 16.7 142 12-182 233-376 (629)
19 KOG0327 Translation initiation 99.9 8E-26 1.7E-30 194.9 12.6 144 7-185 252-397 (397)
20 KOG0335 ATP-dependent RNA heli 99.9 5.6E-25 1.2E-29 195.5 12.5 151 5-183 310-469 (482)
21 KOG0336 ATP-dependent RNA heli 99.9 3.1E-25 6.6E-30 193.4 10.5 147 8-182 448-596 (629)
22 KOG0342 ATP-dependent RNA heli 99.9 4.8E-24 1E-28 188.5 12.6 135 14-179 319-455 (543)
23 TIGR00614 recQ_fam ATP-depende 99.9 2.1E-23 4.5E-28 187.6 16.0 129 11-168 213-343 (470)
24 KOG0343 RNA Helicase [RNA proc 99.9 2.5E-23 5.5E-28 186.3 14.2 148 4-180 293-444 (758)
25 KOG0341 DEAD-box protein abstr 99.9 8.7E-24 1.9E-28 183.4 9.7 144 5-179 403-550 (610)
26 KOG0345 ATP-dependent RNA heli 99.9 9.9E-23 2.1E-27 179.7 14.3 143 10-180 241-386 (567)
27 PRK11057 ATP-dependent DNA hel 99.9 1.5E-22 3.3E-27 187.3 15.9 118 22-167 233-352 (607)
28 PLN03137 ATP-dependent DNA hel 99.9 1.2E-22 2.6E-27 195.3 15.7 119 22-168 677-797 (1195)
29 KOG0344 ATP-dependent RNA heli 99.9 1E-22 2.3E-27 183.0 13.4 146 7-180 370-517 (593)
30 KOG0338 ATP-dependent RNA heli 99.9 5.4E-23 1.2E-27 182.9 10.7 120 22-169 423-544 (691)
31 TIGR03817 DECH_helic helicase/ 99.9 1.6E-22 3.4E-27 190.8 14.1 140 10-180 259-410 (742)
32 KOG0347 RNA helicase [RNA proc 99.9 2E-22 4.3E-27 180.5 8.0 122 24-173 462-585 (731)
33 KOG0339 ATP-dependent RNA heli 99.9 9.3E-22 2E-26 175.1 12.0 155 1-184 445-601 (731)
34 TIGR01389 recQ ATP-dependent D 99.9 2.9E-21 6.2E-26 178.0 15.7 115 24-166 223-339 (591)
35 KOG0348 ATP-dependent RNA heli 99.9 2E-21 4.2E-26 173.8 13.7 134 11-172 412-568 (708)
36 PRK04914 ATP-dependent helicas 99.9 8.9E-21 1.9E-25 181.9 15.6 118 11-155 480-600 (956)
37 KOG0350 DEAD-box ATP-dependent 99.9 4.5E-21 9.8E-26 170.2 11.6 124 22-172 426-554 (620)
38 COG1111 MPH1 ERCC4-like helica 99.8 1.4E-20 3.1E-25 167.4 14.3 127 3-158 345-481 (542)
39 KOG0346 RNA helicase [RNA proc 99.8 4.1E-21 8.8E-26 168.6 10.7 141 5-170 249-422 (569)
40 KOG4284 DEAD box protein [Tran 99.8 7.1E-21 1.5E-25 173.2 11.2 131 7-166 255-388 (980)
41 PRK05298 excinuclease ABC subu 99.8 6.8E-20 1.5E-24 170.9 14.7 143 11-181 432-589 (652)
42 PRK13767 ATP-dependent helicas 99.8 1.1E-19 2.3E-24 174.3 16.0 138 11-178 273-420 (876)
43 KOG0334 RNA helicase [RNA proc 99.8 2.8E-20 6E-25 175.8 11.7 144 7-179 596-741 (997)
44 TIGR00631 uvrb excinuclease AB 99.8 1.9E-19 4.2E-24 167.7 15.2 131 11-169 428-564 (655)
45 COG0514 RecQ Superfamily II DN 99.8 1.9E-19 4E-24 164.6 14.5 120 22-169 227-348 (590)
46 PRK13766 Hef nuclease; Provisi 99.8 8.4E-19 1.8E-23 165.8 15.3 123 7-158 348-479 (773)
47 PRK09751 putative ATP-dependen 99.8 5.5E-19 1.2E-23 174.9 14.4 130 24-180 243-409 (1490)
48 PRK12898 secA preprotein trans 99.8 1.5E-18 3.3E-23 160.7 13.8 125 6-160 454-588 (656)
49 PRK09200 preprotein translocas 99.8 1.8E-18 3.8E-23 163.2 13.4 125 6-160 409-543 (790)
50 KOG0337 ATP-dependent RNA heli 99.8 7.3E-19 1.6E-23 153.7 7.2 144 5-176 241-386 (529)
51 TIGR00580 mfd transcription-re 99.8 3.3E-18 7.1E-23 164.4 11.6 130 24-180 659-802 (926)
52 cd00079 HELICc Helicase superf 99.8 2.2E-17 4.7E-22 121.7 13.5 102 24-153 27-130 (131)
53 PHA02653 RNA helicase NPH-II; 99.8 1E-17 2.2E-22 156.4 13.5 115 24-167 394-523 (675)
54 PF00271 Helicase_C: Helicase 99.7 5E-18 1.1E-22 116.5 7.9 76 44-147 2-77 (78)
55 KOG0349 Putative DEAD-box RNA 99.7 1E-17 2.2E-22 147.5 11.7 133 22-181 502-670 (725)
56 PRK10917 ATP-dependent DNA hel 99.7 1.8E-17 3.9E-22 155.3 14.1 131 23-180 469-616 (681)
57 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1.5E-17 3.2E-22 158.2 13.0 109 25-160 209-338 (819)
58 TIGR00643 recG ATP-dependent D 99.7 4.2E-17 9.1E-22 151.7 13.8 129 23-178 446-591 (630)
59 KOG0354 DEAD-box like helicase 99.7 7.3E-17 1.6E-21 149.9 15.2 130 6-163 395-534 (746)
60 TIGR01587 cas3_core CRISPR-ass 99.7 7.1E-17 1.5E-21 139.6 13.9 94 23-146 220-318 (358)
61 TIGR03714 secA2 accessory Sec 99.7 5.5E-17 1.2E-21 152.3 13.6 127 3-160 402-539 (762)
62 PRK02362 ski2-like helicase; P 99.7 8.1E-17 1.8E-21 152.0 14.9 127 24-178 242-416 (737)
63 PRK10689 transcription-repair 99.7 4.5E-17 9.7E-22 159.4 12.3 140 11-181 799-952 (1147)
64 PRK11664 ATP-dependent RNA hel 99.7 5.3E-17 1.1E-21 154.5 11.0 109 25-160 212-341 (812)
65 TIGR00963 secA preprotein tran 99.7 2.1E-16 4.5E-21 147.8 14.2 128 3-160 383-519 (745)
66 KOG0351 ATP-dependent DNA heli 99.7 1.9E-16 4.1E-21 151.6 12.5 140 2-170 462-604 (941)
67 TIGR02621 cas3_GSU0051 CRISPR- 99.7 3.5E-16 7.6E-21 148.2 12.9 112 23-156 270-389 (844)
68 TIGR00603 rad25 DNA repair hel 99.7 1.2E-15 2.6E-20 143.0 14.3 108 24-163 495-612 (732)
69 PRK00254 ski2-like helicase; P 99.7 1.1E-15 2.3E-20 144.1 13.9 108 24-159 237-389 (720)
70 PRK12906 secA preprotein trans 99.7 9.2E-16 2E-20 144.5 13.2 128 3-160 418-555 (796)
71 PHA02558 uvsW UvsW helicase; P 99.7 1.3E-15 2.8E-20 138.3 13.4 95 24-146 343-438 (501)
72 TIGR03158 cas3_cyano CRISPR-as 99.6 2.1E-15 4.6E-20 131.6 11.1 87 23-145 270-357 (357)
73 smart00490 HELICc helicase sup 99.6 2.7E-15 5.9E-20 101.8 8.7 80 40-147 2-81 (82)
74 COG1201 Lhr Lhr-like helicases 99.6 9.3E-15 2E-19 138.1 15.0 117 11-157 242-361 (814)
75 PRK12900 secA preprotein trans 99.6 4.9E-15 1.1E-19 141.3 12.7 129 3-161 576-714 (1025)
76 PRK11131 ATP-dependent RNA hel 99.6 3.8E-15 8.2E-20 146.0 11.8 109 23-160 284-413 (1294)
77 PRK01172 ski2-like helicase; P 99.6 8.4E-15 1.8E-19 137.0 13.3 120 24-173 235-391 (674)
78 TIGR01967 DEAH_box_HrpA ATP-de 99.6 2.5E-14 5.5E-19 140.5 13.0 119 11-160 267-406 (1283)
79 PRK09401 reverse gyrase; Revie 99.5 1.4E-14 3E-19 142.4 9.2 87 26-145 329-429 (1176)
80 PLN03142 Probable chromatin-re 99.5 6.8E-13 1.5E-17 128.6 16.0 135 8-170 473-613 (1033)
81 PRK09694 helicase Cas3; Provis 99.4 7.4E-13 1.6E-17 126.9 11.7 105 14-145 549-660 (878)
82 KOG0329 ATP-dependent RNA heli 99.4 1.5E-13 3.2E-18 114.6 5.0 75 103-181 302-379 (387)
83 KOG0352 ATP-dependent DNA heli 99.4 8.1E-13 1.8E-17 116.6 9.0 110 26-163 256-367 (641)
84 PRK14701 reverse gyrase; Provi 99.4 6.7E-13 1.5E-17 133.6 9.3 84 25-141 330-424 (1638)
85 TIGR01054 rgy reverse gyrase. 99.4 1.6E-12 3.5E-17 128.0 10.6 75 26-132 327-409 (1171)
86 COG0556 UvrB Helicase subunit 99.4 5.7E-12 1.2E-16 113.6 12.8 121 12-160 433-559 (663)
87 COG1061 SSL2 DNA or RNA helica 99.4 1.1E-11 2.4E-16 111.2 14.6 94 24-146 282-375 (442)
88 COG1202 Superfamily II helicas 99.4 2.7E-12 5.8E-17 116.7 9.2 123 8-158 416-553 (830)
89 COG4098 comFA Superfamily II D 99.3 9.8E-11 2.1E-15 101.1 15.1 127 13-168 293-426 (441)
90 KOG0353 ATP-dependent DNA heli 99.3 1.5E-11 3.2E-16 107.6 9.0 102 10-139 302-403 (695)
91 COG1200 RecG RecG-like helicas 99.2 8.3E-11 1.8E-15 108.7 12.5 148 7-181 455-619 (677)
92 PRK11448 hsdR type I restricti 99.2 1.6E-10 3.4E-15 113.6 13.3 94 25-146 698-799 (1123)
93 PRK12904 preprotein translocas 99.2 5.2E-10 1.1E-14 106.4 13.9 127 3-159 408-574 (830)
94 TIGR00595 priA primosomal prot 99.1 4.4E-10 9.5E-15 102.5 12.2 89 38-153 271-376 (505)
95 PRK13104 secA preprotein trans 99.1 5.3E-10 1.2E-14 106.7 12.8 127 3-159 422-588 (896)
96 PRK05580 primosome assembly pr 99.1 5.7E-10 1.2E-14 105.0 12.3 93 37-156 438-547 (679)
97 PRK13107 preprotein translocas 99.1 9.3E-10 2E-14 105.0 12.0 128 3-160 427-593 (908)
98 COG1204 Superfamily II helicas 99.0 2.6E-09 5.5E-14 101.6 9.7 109 22-157 250-407 (766)
99 COG1205 Distinct helicase fami 98.9 3.1E-09 6.7E-14 102.1 8.1 121 24-171 305-437 (851)
100 COG1197 Mfd Transcription-repa 98.8 5.9E-08 1.3E-12 94.4 13.0 120 23-169 801-930 (1139)
101 KOG4150 Predicted ATP-dependen 98.8 2.5E-08 5.3E-13 91.3 8.2 132 24-182 524-666 (1034)
102 KOG0950 DNA polymerase theta/e 98.7 8.6E-08 1.9E-12 91.4 10.6 115 24-166 459-619 (1008)
103 KOG0947 Cytoplasmic exosomal R 98.7 1.7E-07 3.7E-12 89.6 10.9 120 9-158 553-723 (1248)
104 KOG0384 Chromodomain-helicase 98.7 3.9E-07 8.5E-12 88.8 13.3 126 22-172 696-827 (1373)
105 COG1203 CRISPR-associated heli 98.6 4E-07 8.7E-12 86.6 11.3 111 20-157 435-549 (733)
106 KOG0953 Mitochondrial RNA heli 98.5 1E-06 2.2E-11 80.4 11.4 126 25-177 357-492 (700)
107 KOG0390 DNA repair protein, SN 98.5 2.5E-06 5.4E-11 80.9 14.1 115 26-166 596-717 (776)
108 KOG0391 SNF2 family DNA-depend 98.5 2.1E-06 4.6E-11 83.7 12.4 123 5-158 1259-1387(1958)
109 COG1643 HrpA HrpA-like helicas 98.4 1.2E-06 2.6E-11 84.0 9.7 110 23-159 257-388 (845)
110 KOG0385 Chromatin remodeling c 98.4 8.1E-06 1.8E-10 76.9 14.1 126 7-160 472-601 (971)
111 COG0553 HepA Superfamily II DN 98.4 9E-06 1.9E-10 77.2 14.3 124 7-159 693-823 (866)
112 KOG0387 Transcription-coupled 98.4 6.3E-06 1.4E-10 77.8 12.5 124 7-160 531-660 (923)
113 KOG0951 RNA helicase BRR2, DEA 98.3 3.7E-06 8.1E-11 82.5 11.0 121 15-164 537-708 (1674)
114 PRK12903 secA preprotein trans 98.3 6.6E-06 1.4E-10 78.8 11.9 127 3-159 404-540 (925)
115 KOG1000 Chromatin remodeling p 98.3 3.3E-06 7.1E-11 76.4 9.3 124 21-171 488-618 (689)
116 KOG0948 Nuclear exosomal RNA h 98.2 1.9E-06 4.1E-11 81.0 6.2 119 10-157 370-538 (1041)
117 PRK12326 preprotein translocas 98.2 2.1E-05 4.6E-10 74.3 12.8 127 3-159 405-548 (764)
118 KOG0392 SNF2 family DNA-depend 98.2 8.2E-06 1.8E-10 79.9 10.2 109 24-158 1339-1454(1549)
119 KOG0920 ATP-dependent RNA heli 98.2 4.4E-06 9.5E-11 80.5 8.1 125 8-160 397-546 (924)
120 KOG0389 SNF2 family DNA-depend 98.2 2.8E-05 6E-10 73.6 12.4 122 7-160 762-890 (941)
121 KOG0922 DEAH-box RNA helicase 98.2 4.5E-06 9.7E-11 77.4 7.1 112 22-160 255-392 (674)
122 KOG0952 DNA/RNA helicase MER3/ 98.1 3.2E-05 7E-10 75.0 11.6 116 24-166 348-499 (1230)
123 TIGR01407 dinG_rel DnaQ family 98.0 1.8E-05 3.8E-10 76.5 8.8 90 10-131 661-755 (850)
124 TIGR00348 hsdR type I site-spe 98.0 8E-05 1.7E-09 70.3 12.6 105 25-156 514-649 (667)
125 KOG0388 SNF2 family DNA-depend 98.0 5E-05 1.1E-09 71.5 10.4 123 7-159 1029-1155(1185)
126 COG4096 HsdR Type I site-speci 98.0 6.6E-05 1.4E-09 71.4 10.5 111 7-144 405-522 (875)
127 KOG1002 Nucleotide excision re 97.9 0.00011 2.4E-09 66.9 10.7 126 6-159 620-750 (791)
128 PRK12899 secA preprotein trans 97.9 0.00015 3.1E-09 70.4 12.0 128 3-160 546-683 (970)
129 PRK12901 secA preprotein trans 97.8 0.0002 4.4E-09 69.9 10.5 127 3-159 606-742 (1112)
130 COG4581 Superfamily II RNA hel 97.7 0.00015 3.3E-09 70.8 9.5 117 12-158 368-537 (1041)
131 KOG0923 mRNA splicing factor A 97.7 0.00016 3.4E-09 67.7 8.6 129 2-157 445-605 (902)
132 KOG1123 RNA polymerase II tran 97.7 0.0006 1.3E-08 62.3 12.1 110 22-163 540-658 (776)
133 PF06862 DUF1253: Protein of u 97.7 0.0013 2.8E-08 59.4 14.2 128 14-168 290-425 (442)
134 TIGR00596 rad1 DNA repair prot 97.6 0.00035 7.5E-09 67.4 10.2 42 6-47 270-317 (814)
135 COG1110 Reverse gyrase [DNA re 97.6 0.00031 6.6E-09 68.3 9.0 90 8-132 324-417 (1187)
136 PF13307 Helicase_C_2: Helicas 97.6 0.001 2.3E-08 52.0 10.3 77 25-132 9-92 (167)
137 PRK13103 secA preprotein trans 97.6 0.00053 1.2E-08 66.3 10.2 127 3-159 427-592 (913)
138 KOG0924 mRNA splicing factor A 97.4 0.00026 5.7E-09 66.5 5.9 107 24-157 562-696 (1042)
139 KOG0949 Predicted helicase, DE 97.3 0.00061 1.3E-08 66.1 6.7 78 53-157 965-1047(1330)
140 PRK08074 bifunctional ATP-depe 97.2 0.0056 1.2E-07 60.0 12.6 93 10-131 739-834 (928)
141 COG1199 DinG Rad3-related DNA 97.2 0.0046 1E-07 58.0 11.5 90 11-131 467-558 (654)
142 COG4889 Predicted helicase [Ge 97.2 0.00049 1.1E-08 66.4 4.6 108 24-155 459-585 (1518)
143 CHL00122 secA preprotein trans 97.2 0.007 1.5E-07 58.5 12.5 89 3-120 402-491 (870)
144 PRK07246 bifunctional ATP-depe 97.0 0.013 2.9E-07 56.8 13.0 88 10-131 635-724 (820)
145 KOG4439 RNA polymerase II tran 96.9 0.03 6.6E-07 53.1 13.9 124 7-158 730-858 (901)
146 COG1198 PriA Primosomal protei 96.9 0.011 2.5E-07 56.4 10.9 98 27-153 484-598 (730)
147 KOG0386 Chromatin remodeling c 96.8 0.015 3.2E-07 56.8 10.9 109 8-144 712-820 (1157)
148 PRK10917 ATP-dependent DNA hel 96.6 0.011 2.5E-07 56.0 8.9 80 23-129 308-391 (681)
149 PRK12902 secA preprotein trans 96.6 0.0095 2.1E-07 57.9 8.1 90 3-121 417-507 (939)
150 KOG1015 Transcription regulato 96.3 0.02 4.3E-07 56.1 8.7 121 11-157 1131-1276(1567)
151 PRK11747 dinG ATP-dependent DN 96.3 0.04 8.6E-07 52.6 10.4 93 9-131 521-615 (697)
152 KOG0926 DEAH-box RNA helicase 96.2 0.0027 5.8E-08 60.8 2.0 80 51-157 605-703 (1172)
153 TIGR00643 recG ATP-dependent D 96.1 0.03 6.5E-07 52.7 8.5 80 23-129 282-365 (630)
154 PRK05580 primosome assembly pr 96.0 0.051 1.1E-06 51.7 10.0 77 25-129 190-266 (679)
155 TIGR00595 priA primosomal prot 95.8 0.066 1.4E-06 49.2 9.2 90 9-129 12-101 (505)
156 PF13871 Helicase_C_4: Helicas 95.8 0.076 1.6E-06 45.3 8.9 67 99-169 61-141 (278)
157 PRK14873 primosome assembly pr 95.8 0.093 2E-06 49.9 10.4 93 7-130 173-266 (665)
158 KOG0925 mRNA splicing factor A 95.6 0.077 1.7E-06 48.7 8.9 108 24-157 252-386 (699)
159 KOG0701 dsRNA-specific nucleas 95.5 0.0072 1.6E-07 61.7 2.2 92 26-144 293-395 (1606)
160 TIGR00580 mfd transcription-re 95.4 0.075 1.6E-06 52.3 8.6 79 24-129 499-581 (926)
161 TIGR00604 rad3 DNA repair heli 95.3 0.18 3.8E-06 48.1 10.7 97 10-132 509-615 (705)
162 TIGR03117 cas_csf4 CRISPR-asso 95.1 0.17 3.8E-06 47.8 9.9 93 11-131 458-560 (636)
163 COG1200 RecG RecG-like helicas 95.1 0.14 3.1E-06 48.4 8.9 92 8-127 295-390 (677)
164 COG0513 SrmB Superfamily II DN 94.9 0.17 3.8E-06 46.5 9.0 91 10-127 83-180 (513)
165 COG0653 SecA Preprotein transl 94.7 0.081 1.8E-06 51.1 6.4 91 3-123 407-497 (822)
166 PRK10689 transcription-repair 94.3 0.22 4.8E-06 50.2 8.7 77 24-127 648-728 (1147)
167 smart00492 HELICc3 helicase su 94.2 0.25 5.4E-06 37.8 7.2 48 59-132 30-79 (141)
168 COG1198 PriA Primosomal protei 93.9 0.29 6.3E-06 47.0 8.3 92 7-129 230-321 (730)
169 TIGR02562 cas3_yersinia CRISPR 93.7 0.26 5.7E-06 49.0 7.9 107 29-145 760-877 (1110)
170 KOG2340 Uncharacterized conser 93.5 0.54 1.2E-05 43.7 8.9 116 25-166 552-676 (698)
171 cd00268 DEADc DEAD-box helicas 93.4 0.66 1.4E-05 36.4 8.6 91 11-129 54-151 (203)
172 COG1110 Reverse gyrase [DNA re 93.4 0.33 7.2E-06 48.0 7.9 72 13-108 114-190 (1187)
173 PF02399 Herpes_ori_bp: Origin 93.4 0.93 2E-05 44.0 10.8 87 24-144 281-373 (824)
174 PRK14701 reverse gyrase; Provi 93.3 0.42 9.1E-06 49.8 8.8 63 24-109 121-188 (1638)
175 PRK11776 ATP-dependent RNA hel 92.8 0.4 8.7E-06 43.1 7.2 90 12-129 60-155 (460)
176 PRK11634 ATP-dependent RNA hel 92.2 0.67 1.5E-05 43.8 8.1 88 12-127 62-155 (629)
177 PRK11192 ATP-dependent RNA hel 91.2 10 0.00022 33.7 14.2 78 25-129 73-155 (434)
178 TIGR00614 recQ_fam ATP-depende 91.0 0.85 1.8E-05 41.3 7.2 72 9-108 39-110 (470)
179 KOG1016 Predicted DNA helicase 90.1 1.3 2.9E-05 43.1 7.7 113 22-158 716-849 (1387)
180 cd01524 RHOD_Pyr_redox Member 89.7 0.66 1.4E-05 31.9 4.2 38 23-61 49-86 (90)
181 TIGR01054 rgy reverse gyrase. 89.7 0.82 1.8E-05 46.3 6.4 62 25-109 121-188 (1171)
182 KOG0330 ATP-dependent RNA heli 89.4 2.2 4.9E-05 38.3 8.2 90 9-126 114-209 (476)
183 TIGR01389 recQ ATP-dependent D 89.4 2.8 6E-05 39.1 9.3 91 9-127 41-133 (591)
184 KOG0347 RNA helicase [RNA proc 89.3 0.95 2.1E-05 42.3 5.9 44 28-71 266-312 (731)
185 PRK04837 ATP-dependent RNA hel 89.0 3 6.4E-05 37.0 8.9 77 25-128 83-164 (423)
186 cd00158 RHOD Rhodanese Homolog 89.0 0.86 1.9E-05 30.4 4.3 40 22-61 47-86 (89)
187 KOG1001 Helicase-like transcri 88.9 0.16 3.5E-06 48.3 0.8 92 26-144 540-632 (674)
188 PRK10590 ATP-dependent RNA hel 88.7 3.1 6.8E-05 37.4 8.9 75 26-127 76-155 (456)
189 cd01449 TST_Repeat_2 Thiosulfa 88.6 1.4 2.9E-05 31.6 5.4 38 23-60 76-113 (118)
190 PRK04537 ATP-dependent RNA hel 88.6 2 4.4E-05 40.1 7.8 76 25-127 84-165 (572)
191 smart00491 HELICc2 helicase su 88.4 1.8 4E-05 32.9 6.3 46 63-132 31-80 (142)
192 cd01528 RHOD_2 Member of the R 88.4 1.6 3.4E-05 30.6 5.5 53 9-62 43-95 (101)
193 KOG0951 RNA helicase BRR2, DEA 88.4 6.4 0.00014 40.4 11.2 115 22-166 1356-1502(1674)
194 cd01518 RHOD_YceA Member of th 88.3 1.2 2.6E-05 31.2 4.8 39 23-61 59-97 (101)
195 cd01448 TST_Repeat_1 Thiosulfa 87.7 1.5 3.3E-05 31.7 5.2 52 9-62 65-117 (122)
196 smart00450 RHOD Rhodanese Homo 87.1 1.1 2.4E-05 30.1 4.0 41 22-62 53-93 (100)
197 cd01529 4RHOD_Repeats Member o 87.1 1.4 3E-05 30.6 4.5 40 22-61 53-92 (96)
198 cd01523 RHOD_Lact_B Member of 86.5 1.1 2.5E-05 31.2 3.8 39 23-62 59-97 (100)
199 cd01519 RHOD_HSP67B2 Member of 86.2 1.3 2.9E-05 30.9 4.1 39 23-61 64-102 (106)
200 COG1197 Mfd Transcription-repa 86.0 4.1 8.8E-05 41.1 8.5 79 22-127 640-722 (1139)
201 cd01444 GlpE_ST GlpE sulfurtra 85.9 2 4.3E-05 29.4 4.8 39 23-61 54-92 (96)
202 KOG1513 Nuclear helicase MOP-3 85.6 1.4 3E-05 43.1 4.9 63 99-165 857-933 (1300)
203 PF10593 Z1: Z1 domain; Inter 85.1 6.2 0.00013 32.8 8.1 45 100-149 136-181 (239)
204 cd01532 4RHOD_Repeat_1 Member 84.9 1.6 3.4E-05 30.2 3.8 38 24-61 49-88 (92)
205 cd01520 RHOD_YbbB Member of th 84.2 2.8 6.1E-05 30.9 5.2 40 22-62 83-123 (128)
206 KOG0339 ATP-dependent RNA heli 84.1 3.1 6.7E-05 38.8 6.2 74 25-126 296-375 (731)
207 cd01527 RHOD_YgaP Member of th 83.9 2.1 4.5E-05 29.7 4.2 39 23-61 52-90 (99)
208 KOG0338 ATP-dependent RNA heli 83.7 8.8 0.00019 35.9 9.0 88 11-128 236-334 (691)
209 cd01533 4RHOD_Repeat_2 Member 82.7 4.4 9.5E-05 28.7 5.6 39 24-62 65-104 (109)
210 PLN03137 ATP-dependent DNA hel 82.6 5 0.00011 40.7 7.5 59 26-108 501-561 (1195)
211 PRK01297 ATP-dependent RNA hel 82.4 8.3 0.00018 34.8 8.4 77 25-127 162-243 (475)
212 PRK11057 ATP-dependent DNA hel 82.2 5.3 0.00011 37.5 7.3 49 26-75 66-114 (607)
213 PF00270 DEAD: DEAD/DEAH box h 81.9 13 0.00029 27.6 8.3 77 24-127 43-125 (169)
214 TIGR03817 DECH_helic helicase/ 81.6 6.6 0.00014 37.9 7.9 53 12-66 70-124 (742)
215 KOG0331 ATP-dependent RNA heli 81.3 4.7 0.0001 37.4 6.4 96 22-144 162-270 (519)
216 cd01447 Polysulfide_ST Polysul 81.2 1.5 3.3E-05 30.4 2.6 40 23-62 59-98 (103)
217 PTZ00110 helicase; Provisional 81.0 6.2 0.00013 36.6 7.2 76 25-127 203-283 (545)
218 cd01445 TST_Repeats Thiosulfat 81.0 5.1 0.00011 30.2 5.6 51 9-61 81-134 (138)
219 cd01525 RHOD_Kc Member of the 81.0 2.4 5.2E-05 29.6 3.6 37 25-61 65-101 (105)
220 cd01534 4RHOD_Repeat_3 Member 80.6 2.7 5.9E-05 29.0 3.7 37 24-61 55-91 (95)
221 cd01526 RHOD_ThiF Member of th 80.4 2.7 6E-05 30.6 3.9 40 23-62 70-110 (122)
222 cd01522 RHOD_1 Member of the R 80.1 4.9 0.00011 29.1 5.1 40 23-62 62-101 (117)
223 cd01535 4RHOD_Repeat_4 Member 79.1 6 0.00013 30.1 5.5 37 24-60 48-84 (145)
224 cd01521 RHOD_PspE2 Member of t 78.8 3.6 7.8E-05 29.3 4.0 40 22-62 61-102 (110)
225 PRK09401 reverse gyrase; Revie 77.3 6.3 0.00014 40.2 6.4 62 24-108 122-188 (1176)
226 PF00581 Rhodanese: Rhodanese- 77.2 6.3 0.00014 27.3 4.9 53 9-61 51-108 (113)
227 PRK09751 putative ATP-dependen 76.9 12 0.00025 39.2 8.3 78 25-129 37-132 (1490)
228 TIGR03865 PQQ_CXXCW PQQ-depend 76.4 7.2 0.00016 30.3 5.3 39 23-61 114-153 (162)
229 PRK11493 sseA 3-mercaptopyruva 75.5 6.8 0.00015 32.9 5.4 39 23-61 229-267 (281)
230 PLN02160 thiosulfate sulfurtra 75.4 8 0.00017 29.0 5.2 39 23-61 79-117 (136)
231 PRK12898 secA preprotein trans 75.3 14 0.0003 35.4 7.8 58 8-67 128-189 (656)
232 cd00046 DEXDc DEAD-like helica 74.1 26 0.00057 24.2 8.3 55 11-66 17-73 (144)
233 PRK13766 Hef nuclease; Provisi 73.6 11 0.00025 36.1 6.9 82 23-132 56-142 (773)
234 KOG0345 ATP-dependent RNA heli 73.3 20 0.00043 33.2 7.9 93 9-127 59-163 (567)
235 PLN00206 DEAD-box ATP-dependen 72.6 20 0.00043 33.0 8.0 77 24-127 195-276 (518)
236 cd01530 Cdc25 Cdc25 phosphatas 72.3 5.5 0.00012 29.2 3.6 39 23-61 66-117 (121)
237 PRK00162 glpE thiosulfate sulf 71.2 14 0.0003 26.0 5.4 40 23-62 56-95 (108)
238 PRK10287 thiosulfate:cyanide s 71.1 20 0.00043 25.8 6.2 50 9-61 46-95 (104)
239 PLN02723 3-mercaptopyruvate su 70.8 10 0.00023 32.6 5.5 51 9-61 255-305 (320)
240 PRK14873 primosome assembly pr 70.3 43 0.00094 32.1 9.9 54 99-157 471-538 (665)
241 PRK13767 ATP-dependent helicas 70.1 20 0.00044 35.3 7.9 78 25-129 84-180 (876)
242 PTZ00424 helicase 45; Provisio 69.7 38 0.00082 29.4 8.9 80 23-129 94-178 (401)
243 COG1205 Distinct helicase fami 69.1 23 0.0005 34.9 7.9 106 10-144 102-225 (851)
244 KOG0921 Dosage compensation co 68.6 8.1 0.00018 38.4 4.6 108 22-156 640-772 (1282)
245 KOG0340 ATP-dependent RNA heli 68.3 13 0.00027 33.3 5.4 59 11-70 62-123 (442)
246 KOG0350 DEAD-box ATP-dependent 67.4 17 0.00036 34.0 6.1 93 13-127 203-301 (620)
247 PRK05320 rhodanese superfamily 67.0 11 0.00024 31.6 4.7 40 24-63 174-213 (257)
248 PRK13104 secA preprotein trans 66.6 28 0.0006 34.6 7.9 59 9-69 108-170 (896)
249 KOG0385 Chromatin remodeling c 65.8 37 0.00081 33.4 8.3 60 14-75 206-265 (971)
250 cd00032 CASc Caspase, interleu 65.3 76 0.0016 26.0 11.1 88 24-142 8-108 (243)
251 KOG0342 ATP-dependent RNA heli 65.3 30 0.00065 32.1 7.3 61 22-109 151-215 (543)
252 PRK01415 hypothetical protein; 65.1 15 0.00033 30.8 5.2 43 22-64 168-210 (247)
253 COG0514 RecQ Superfamily II DN 64.5 22 0.00047 33.6 6.5 49 26-75 58-106 (590)
254 TIGR00963 secA preprotein tran 63.6 28 0.00062 33.8 7.2 58 9-68 82-143 (745)
255 PRK00142 putative rhodanese-re 63.1 13 0.00027 32.2 4.5 56 22-82 168-223 (314)
256 TIGR02981 phageshock_pspE phag 62.9 35 0.00075 24.3 6.1 36 24-60 57-92 (101)
257 PRK05728 DNA polymerase III su 59.2 26 0.00057 26.6 5.2 39 7-48 14-52 (142)
258 PLN02723 3-mercaptopyruvate su 58.7 22 0.00047 30.6 5.2 51 9-61 89-140 (320)
259 TIGR00696 wecB_tagA_cpsF bacte 58.3 91 0.002 24.6 8.4 52 24-75 47-99 (177)
260 PRK09200 preprotein translocas 57.7 41 0.00089 33.0 7.3 59 8-68 103-166 (790)
261 PF11496 HDA2-3: Class II hist 57.4 1.2E+02 0.0026 26.1 9.4 145 7-163 97-250 (297)
262 PRK12899 secA preprotein trans 57.3 45 0.00098 33.4 7.5 42 26-68 136-181 (970)
263 COG1111 MPH1 ERCC4-like helica 55.9 43 0.00093 31.2 6.7 121 25-173 58-189 (542)
264 PRK11493 sseA 3-mercaptopyruva 55.7 24 0.00051 29.7 4.8 53 9-63 73-126 (281)
265 COG1204 Superfamily II helicas 54.3 36 0.00078 33.2 6.3 39 25-64 76-117 (766)
266 PF12683 DUF3798: Protein of u 54.2 10 0.00022 32.4 2.3 80 22-135 59-144 (275)
267 COG4098 comFA Superfamily II D 54.2 1.7E+02 0.0036 26.4 9.9 56 7-65 129-185 (441)
268 COG0607 PspE Rhodanese-related 53.8 15 0.00032 25.4 2.8 37 24-61 60-97 (110)
269 PRK02362 ski2-like helicase; P 53.7 32 0.00069 33.1 5.8 39 24-63 66-107 (737)
270 PF01751 Toprim: Toprim domain 53.2 23 0.0005 24.8 3.8 32 28-60 1-32 (100)
271 cd06533 Glyco_transf_WecG_TagA 53.1 1.1E+02 0.0023 23.8 8.4 64 9-75 33-98 (171)
272 cd03028 GRX_PICOT_like Glutare 52.0 74 0.0016 21.7 6.4 41 25-66 7-53 (90)
273 cd03418 GRX_GRXb_1_3_like Glut 52.0 61 0.0013 20.7 6.8 44 28-72 2-46 (75)
274 PF04364 DNA_pol3_chi: DNA pol 51.5 34 0.00074 25.8 4.7 38 9-49 16-53 (137)
275 TIGR03167 tRNA_sel_U_synt tRNA 51.1 50 0.0011 28.6 6.1 51 12-63 61-112 (311)
276 TIGR00365 monothiol glutaredox 50.3 86 0.0019 21.9 7.3 42 26-68 12-59 (97)
277 KOG0298 DEAD box-containing he 50.2 35 0.00076 35.1 5.6 118 7-157 1204-1325(1394)
278 PRK12904 preprotein translocas 50.0 73 0.0016 31.5 7.6 59 9-69 107-169 (830)
279 KOG0389 SNF2 family DNA-depend 48.2 1.3E+02 0.0028 29.8 8.8 71 14-108 438-508 (941)
280 PRK05597 molybdopterin biosynt 47.5 27 0.00058 30.6 4.0 39 23-61 312-350 (355)
281 KOG0343 RNA Helicase [RNA proc 47.3 83 0.0018 30.0 7.2 52 11-62 124-181 (758)
282 PRK00254 ski2-like helicase; P 47.3 66 0.0014 30.8 6.9 39 24-63 67-108 (720)
283 smart00115 CASc Caspase, inter 47.1 1.6E+02 0.0035 24.1 11.2 89 23-141 6-106 (241)
284 KOG0329 ATP-dependent RNA heli 46.7 34 0.00074 29.5 4.3 75 25-126 110-190 (387)
285 KOG0334 RNA helicase [RNA proc 46.3 48 0.0011 33.2 5.8 47 25-75 438-488 (997)
286 cd01080 NAD_bind_m-THF_DH_Cycl 46.2 1.4E+02 0.0031 23.3 8.9 94 9-135 29-122 (168)
287 PRK08762 molybdopterin biosynt 45.2 32 0.0007 30.2 4.2 38 23-60 55-92 (376)
288 PRK13103 secA preprotein trans 45.0 1.1E+02 0.0024 30.6 7.9 61 8-70 107-171 (913)
289 PRK09629 bifunctional thiosulf 43.7 52 0.0011 31.2 5.5 50 9-60 209-258 (610)
290 smart00487 DEXDc DEAD-like hel 43.0 1.3E+02 0.0029 22.0 7.7 47 25-75 54-104 (201)
291 TIGR02621 cas3_GSU0051 CRISPR- 43.0 49 0.0011 32.7 5.3 43 24-66 60-129 (844)
292 KOG0335 ATP-dependent RNA heli 42.9 1.1E+02 0.0023 28.4 7.1 51 9-59 127-189 (482)
293 cd05212 NAD_bind_m-THF_DH_Cycl 42.0 1.5E+02 0.0033 22.4 9.3 91 9-132 13-103 (140)
294 KOG0346 RNA helicase [RNA proc 41.9 48 0.001 30.6 4.7 74 10-110 73-156 (569)
295 PF13245 AAA_19: Part of AAA d 41.9 66 0.0014 21.6 4.5 39 7-45 23-62 (76)
296 PF03808 Glyco_tran_WecB: Glyc 41.6 1.6E+02 0.0036 22.7 8.1 65 8-75 34-100 (172)
297 smart00493 TOPRIM topoisomeras 41.5 95 0.0021 20.0 6.1 45 28-74 2-46 (76)
298 cd03031 GRX_GRX_like Glutaredo 41.1 1.2E+02 0.0025 23.4 6.2 45 27-72 1-52 (147)
299 TIGR02329 propionate_PrpR prop 40.8 2.4E+02 0.0051 26.3 9.2 121 26-177 4-126 (526)
300 PRK07878 molybdopterin biosynt 39.9 40 0.00087 29.9 4.0 39 23-61 341-379 (392)
301 PRK09629 bifunctional thiosulf 39.6 59 0.0013 30.8 5.2 52 8-61 66-118 (610)
302 cd01446 DSP_MapKP N-terminal r 39.6 44 0.00094 24.4 3.6 37 24-60 74-121 (132)
303 PRK11784 tRNA 2-selenouridine 39.5 1.1E+02 0.0024 26.8 6.6 49 24-74 87-136 (345)
304 cd03027 GRX_DEP Glutaredoxin ( 39.4 1E+02 0.0023 19.8 6.2 43 27-70 2-45 (73)
305 TIGR02196 GlrX_YruB Glutaredox 39.2 56 0.0012 20.3 3.7 46 29-75 3-49 (74)
306 COG1182 AcpD Acyl carrier prot 38.8 41 0.00089 27.5 3.5 28 100-144 89-116 (202)
307 cd01443 Cdc25_Acr2p Cdc25 enzy 38.0 1.3E+02 0.0029 21.1 5.8 37 25-61 66-109 (113)
308 KOG0348 ATP-dependent RNA heli 37.6 55 0.0012 31.0 4.5 90 11-127 192-293 (708)
309 COG2519 GCD14 tRNA(1-methylade 37.3 61 0.0013 27.4 4.4 37 14-50 177-213 (256)
310 PRK10329 glutaredoxin-like pro 37.1 1.3E+02 0.0028 20.3 6.4 41 27-68 2-43 (81)
311 TIGR03714 secA2 accessory Sec 36.4 1.6E+02 0.0034 29.0 7.5 58 8-67 95-161 (762)
312 PRK06827 phosphoribosylpyropho 36.4 1.3E+02 0.0027 27.0 6.5 61 24-108 263-328 (382)
313 KOG0351 ATP-dependent DNA heli 36.1 1E+02 0.0022 31.0 6.3 49 27-76 306-354 (941)
314 PRK15483 type III restriction- 35.0 1.4E+02 0.0031 30.1 7.2 70 97-170 499-580 (986)
315 COG1922 WecG Teichoic acid bio 34.7 2.8E+02 0.0061 23.4 8.4 51 25-75 108-160 (253)
316 KOG0337 ATP-dependent RNA heli 34.6 1.5E+02 0.0033 27.3 6.6 92 9-127 74-170 (529)
317 TIGR00096 probable S-adenosylm 33.3 1.1E+02 0.0024 26.1 5.4 48 26-75 25-72 (276)
318 COG0194 Gmk Guanylate kinase [ 33.2 1.1E+02 0.0024 24.7 5.1 77 38-143 56-135 (191)
319 PRK09189 uroporphyrinogen-III 33.0 1.9E+02 0.0041 23.3 6.7 51 23-75 116-169 (240)
320 PF11019 DUF2608: Protein of u 32.6 1.4E+02 0.0031 24.8 6.0 48 7-59 163-211 (252)
321 PRK07411 hypothetical protein; 32.1 65 0.0014 28.6 4.0 38 24-62 341-378 (390)
322 KOG0352 ATP-dependent DNA heli 32.0 84 0.0018 29.1 4.6 49 26-75 62-110 (641)
323 cd01531 Acr2p Eukaryotic arsen 31.8 93 0.002 21.9 4.2 39 24-62 61-108 (113)
324 PF02602 HEM4: Uroporphyrinoge 31.6 1.5E+02 0.0032 23.4 5.7 52 22-75 114-167 (231)
325 PRK01172 ski2-like helicase; P 31.5 1.2E+02 0.0026 28.7 6.0 37 25-62 65-104 (674)
326 PRK12326 preprotein translocas 31.3 1.8E+02 0.004 28.5 7.0 62 7-70 102-167 (764)
327 TIGR03498 FliI_clade3 flagella 30.9 4E+02 0.0088 24.1 10.0 11 134-144 270-280 (418)
328 PF09419 PGP_phosphatase: Mito 30.9 2.6E+02 0.0057 21.9 7.0 61 9-75 62-130 (168)
329 KOG0327 Translation initiation 30.8 72 0.0016 28.6 4.0 58 99-160 122-180 (397)
330 COG3587 Restriction endonuclea 30.6 1.1E+02 0.0024 30.5 5.4 69 99-171 483-566 (985)
331 PHA03371 circ protein; Provisi 30.4 43 0.00094 27.9 2.4 32 113-144 30-75 (240)
332 PRK06646 DNA polymerase III su 29.9 1.2E+02 0.0025 23.5 4.7 39 7-48 14-52 (154)
333 COG1609 PurR Transcriptional r 29.2 3.7E+02 0.0079 23.0 10.2 46 30-75 155-200 (333)
334 PRK13107 preprotein translocas 28.5 2.7E+02 0.0059 27.9 7.8 58 8-67 107-168 (908)
335 PRK09280 F0F1 ATP synthase sub 28.4 3.3E+02 0.0073 25.0 8.0 67 7-75 184-262 (463)
336 PTZ00062 glutaredoxin; Provisi 28.2 3.2E+02 0.007 22.1 8.0 56 11-72 102-163 (204)
337 TIGR02181 GRX_bact Glutaredoxi 28.0 1.7E+02 0.0037 18.9 5.9 39 30-69 3-42 (79)
338 cd01132 F1_ATPase_alpha F1 ATP 27.8 2.3E+02 0.0051 24.1 6.5 66 8-75 109-185 (274)
339 COG0300 DltE Short-chain dehyd 27.5 2.8E+02 0.006 23.5 6.9 50 24-73 29-78 (265)
340 PRK09271 flavodoxin; Provision 27.5 2.7E+02 0.0059 21.0 7.7 28 28-56 4-35 (160)
341 PRK08972 fliI flagellum-specif 27.3 4.9E+02 0.011 23.9 9.3 11 134-144 292-302 (444)
342 PRK13958 N-(5'-phosphoribosyl) 27.1 3.3E+02 0.0072 21.8 7.1 39 25-66 53-91 (207)
343 PF00501 AMP-binding: AMP-bind 27.1 3.8E+02 0.0083 22.7 7.9 70 3-73 22-93 (417)
344 PF01583 APS_kinase: Adenylyls 26.9 1.2E+02 0.0025 23.6 4.2 38 37-75 18-66 (156)
345 PRK07960 fliI flagellum-specif 26.5 4.8E+02 0.01 24.0 8.6 11 134-144 305-315 (455)
346 PRK09281 F0F1 ATP synthase sub 26.5 2.3E+02 0.005 26.3 6.6 59 7-67 201-270 (502)
347 KOG0336 ATP-dependent RNA heli 26.4 1.6E+02 0.0035 27.1 5.4 50 22-75 291-343 (629)
348 COG1054 Predicted sulfurtransf 26.0 69 0.0015 27.8 2.9 53 22-79 169-221 (308)
349 PRK12906 secA preprotein trans 25.8 2E+02 0.0043 28.4 6.3 61 8-70 105-169 (796)
350 PRK06756 flavodoxin; Provision 25.6 2.8E+02 0.006 20.4 10.3 29 28-57 5-37 (148)
351 KOG0952 DNA/RNA helicase MER3/ 25.4 2.4E+02 0.0053 28.9 6.8 117 24-172 163-297 (1230)
352 PRK05600 thiamine biosynthesis 25.2 1.3E+02 0.0028 26.6 4.7 35 26-61 333-369 (370)
353 COG1129 MglA ABC-type sugar tr 25.2 3.3E+02 0.0072 25.3 7.4 85 31-159 371-461 (500)
354 TIGR01041 ATP_syn_B_arch ATP s 24.9 5.4E+02 0.012 23.6 9.9 17 133-149 277-293 (458)
355 TIGR03567 FMN_reduc_SsuE FMN r 24.5 3.2E+02 0.007 20.8 8.4 28 100-144 67-94 (171)
356 PRK04034 rps8p 30S ribosomal p 23.9 1.6E+02 0.0034 22.1 4.3 47 9-55 5-51 (130)
357 KOG1673 Ras GTPases [General f 23.8 98 0.0021 24.7 3.2 68 58-157 100-168 (205)
358 cd01133 F1-ATPase_beta F1 ATP 23.3 4.7E+02 0.01 22.3 8.2 67 7-75 109-187 (274)
359 TIGR03324 alt_F1F0_F1_al alter 22.5 2.8E+02 0.0061 25.8 6.4 59 7-67 201-270 (497)
360 TIGR01866 cas_Csn2 CRISPR-asso 22.4 2.1E+02 0.0045 23.5 5.0 34 25-59 162-200 (216)
361 PRK15424 propionate catabolism 22.3 6.5E+02 0.014 23.6 9.0 122 24-177 12-136 (538)
362 COG1201 Lhr Lhr-like helicases 22.0 80 0.0017 31.2 2.9 95 9-131 53-159 (814)
363 COG0547 TrpD Anthranilate phos 21.9 1.6E+02 0.0035 25.9 4.5 52 7-59 172-223 (338)
364 COG0610 Type I site-specific r 21.8 1.7E+02 0.0037 29.4 5.2 53 99-156 593-651 (962)
365 KOG0383 Predicted helicase [Ge 21.8 79 0.0017 30.6 2.7 65 22-108 628-692 (696)
366 KOG0326 ATP-dependent RNA heli 21.7 1.3E+02 0.0028 26.8 3.8 51 14-65 143-196 (459)
367 PF04273 DUF442: Putative phos 21.6 1.5E+02 0.0033 21.4 3.7 20 25-44 86-105 (110)
368 COG0529 CysC Adenylylsulfate k 21.6 2.4E+02 0.0051 23.0 5.0 39 37-76 39-88 (197)
369 CHL00059 atpA ATP synthase CF1 21.4 2.6E+02 0.0057 25.9 5.9 59 7-67 180-249 (485)
370 TIGR00631 uvrb excinuclease AB 21.2 7.4E+02 0.016 23.8 9.4 91 25-142 54-174 (655)
371 PF03853 YjeF_N: YjeF-related 20.7 4E+02 0.0086 20.4 6.7 61 13-75 14-80 (169)
372 PRK04196 V-type ATP synthase s 20.5 6.7E+02 0.014 23.0 10.6 17 133-149 279-295 (460)
373 cd00532 MGS-like MGS-like doma 20.2 3.3E+02 0.0071 19.3 6.7 62 2-75 5-67 (112)
374 COG2927 HolC DNA polymerase II 20.2 2.1E+02 0.0045 22.1 4.3 36 10-48 17-52 (144)
375 PF09711 Cas_Csn2: CRISPR-asso 20.2 3.2E+02 0.0069 22.0 5.6 48 9-59 116-168 (188)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-34 Score=240.84 Aligned_cols=150 Identities=25% Similarity=0.485 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
+.+++.+-|..|.. ...-.++||||||++.+++|.+.+++.. +.+.++||+|++++|.+++.+||+|
T Consensus 249 ~EewKfdtLcdLYd-~LtItQavIFcnTk~kVdwLtekm~~~n-ftVssmHGDm~qkERd~im~dFRsg----------- 315 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMEQKERDKIMNDFRSG----------- 315 (400)
T ss_pred hhhhhHhHHHHHhh-hhehheEEEEecccchhhHHHHHHHhhC-ceeeeccCCcchhHHHHHHHHhhcC-----------
Confidence 34444444444333 3444899999999999999999999987 7999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~ 164 (185)
+.++||+||+ .+||+|+|.|++|||||+|.+.+.|+||+||. .|+.|++|+||...|...++
T Consensus 316 ------------~SrvLitTDV----waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 316 ------------KSRVLITTDV----WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILR 379 (400)
T ss_pred ------------CceEEEEech----hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHH
Confidence 7999999999 99999999999999999999999999999995 68999999999999999999
Q ss_pred HHHHHhCCccccccCCccccC
Q 029910 165 SMEESLGLIVAEVPINISEIL 185 (185)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~l 185 (185)
++|+.+...+.++|+++.+++
T Consensus 380 dieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 380 DIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred HHHHHHhhhcccccchhhhcC
Confidence 999999999999999998874
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=233.26 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=131.6
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
.|.+++.++|..+. ...+.|+||||+|++.|+.|...|+..+ +.+..+||++++.+|..+|+.|++|
T Consensus 324 ~K~~~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~~-~~a~~iHGd~sQ~eR~~~L~~FreG---------- 390 (519)
T KOG0331|consen 324 AKLRKLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRKG-WPAVAIHGDKSQSERDWVLKGFREG---------- 390 (519)
T ss_pred HHHHHHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhcC-cceeeecccccHHHHHHHHHhcccC----------
Confidence 36677888888744 4566899999999999999999999988 8999999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHH
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTL 163 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~ 163 (185)
...||||||+ ++||+|+|+|++|||||+|.++++|+||+||++ +..|.+++|++..+....
T Consensus 391 -------------~~~vLVATdV----AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a 453 (519)
T KOG0331|consen 391 -------------KSPVLVATDV----AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLA 453 (519)
T ss_pred -------------CcceEEEccc----ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHH
Confidence 7999999999 999999999999999999999999999999984 578999999999999888
Q ss_pred HHHHHHhCCccccccCCcc
Q 029910 164 RSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~ 182 (185)
..+.+.+...-+++|..+.
T Consensus 454 ~~l~~~l~e~~q~v~~~l~ 472 (519)
T KOG0331|consen 454 RELIKVLREAGQTVPPDLL 472 (519)
T ss_pred HHHHHHHHHccCCCChHHH
Confidence 8888887766666665543
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=224.72 Aligned_cols=141 Identities=26% Similarity=0.422 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
...|+.|++. ..+.++||||+++.++++++-.|++.| +.+..|||+|++..|...+++|+.+
T Consensus 288 ~~yLV~ll~e-----~~g~s~iVF~~t~~tt~~la~~L~~lg-~~a~~LhGqmsq~~Rlg~l~~Fk~~------------ 349 (476)
T KOG0330|consen 288 DTYLVYLLNE-----LAGNSVIVFCNTCNTTRFLALLLRNLG-FQAIPLHGQMSQSKRLGALNKFKAG------------ 349 (476)
T ss_pred chhHHHHHHh-----hcCCcEEEEEeccchHHHHHHHHHhcC-cceecccchhhHHHHHHHHHHHhcc------------
Confidence 3445555554 445999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHH
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~ 165 (185)
...||||||+ ++||+|+|.|++|||||+|.+..+||||+||+ +|++|.+|++|+.+|++.+++
T Consensus 350 -----------~r~iLv~TDV----aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qr 414 (476)
T KOG0330|consen 350 -----------ARSILVCTDV----ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQR 414 (476)
T ss_pred -----------CCcEEEecch----hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHH
Confidence 6999999999 99999999999999999999999999999995 689999999999999999999
Q ss_pred HHHHhCCccccccCCc
Q 029910 166 MEESLGLIVAEVPINI 181 (185)
Q Consensus 166 l~~~~~~~~~~~~~~~ 181 (185)
||..++.++.+.+.+-
T Consensus 415 IE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 415 IEHALGKKLPEYKVDK 430 (476)
T ss_pred HHHHHhcCCCccCcch
Confidence 9999999998766543
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.9e-29 Score=224.76 Aligned_cols=143 Identities=24% Similarity=0.375 Sum_probs=129.2
Q ss_pred EecchHH-HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 4 SFTFQET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 4 ~~~~~~~-l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
++++.+. ++++|..++. .....++||||+|+..++.|+..|...| +++..+||+|++++|.+++++|++|
T Consensus 252 ~~v~~~~~k~~~L~~ll~-~~~~~~~IVF~~tk~~~~~l~~~l~~~g-~~~~~lhG~l~q~~R~~~l~~F~~g------- 322 (513)
T COG0513 252 LEVESEEEKLELLLKLLK-DEDEGRVIVFVRTKRLVEELAESLRKRG-FKVAALHGDLPQEERDRALEKFKDG------- 322 (513)
T ss_pred EEeCCHHHHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHHCC-CeEEEecCCCCHHHHHHHHHHHHcC-------
Confidence 3344333 7888888777 5555689999999999999999999999 8999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCc-h
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGG-E 159 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~-e 159 (185)
..+||||||+ ++||+|+|++++|||||+|.++++|+||+||+ +|+.|.+|+|+++. |
T Consensus 323 ----------------~~~vLVaTDv----aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e 382 (513)
T COG0513 323 ----------------ELRVLVATDV----AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEE 382 (513)
T ss_pred ----------------CCCEEEEech----hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHH
Confidence 7999999999 99999999999999999999999999999997 67889999999986 8
Q ss_pred HHHHHHHHHHhCCccc
Q 029910 160 VVTLRSMEESLGLIVA 175 (185)
Q Consensus 160 ~~~~~~l~~~~~~~~~ 175 (185)
...+..+++.++..++
T Consensus 383 ~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 383 VKKLKRIEKRLERKLP 398 (513)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999877654
No 5
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=212.69 Aligned_cols=151 Identities=24% Similarity=0.453 Sum_probs=141.8
Q ss_pred EecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
.|++..-++.-|++|++ +.+-.++|||||+..+++.|++.+.+.| +++.++|+.|.++.|..++.+|++|
T Consensus 302 afV~e~qKvhCLntLfs-kLqINQsIIFCNS~~rVELLAkKITelG-yscyyiHakM~Q~hRNrVFHdFr~G-------- 371 (459)
T KOG0326|consen 302 AFVEERQKVHCLNTLFS-KLQINQSIIFCNSTNRVELLAKKITELG-YSCYYIHAKMAQEHRNRVFHDFRNG-------- 371 (459)
T ss_pred eeechhhhhhhHHHHHH-HhcccceEEEeccchHhHHHHHHHHhcc-chhhHHHHHHHHhhhhhhhhhhhcc--------
Confidence 35677778888888887 7778999999999999999999999999 8999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHH
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVV 161 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~ 161 (185)
.++.|||||. +.||+|++.+++|||||+|++.++|+||+||. .|..|.+|++++-+|..
T Consensus 372 ---------------~crnLVctDL----~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 372 ---------------KCRNLVCTDL----FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred ---------------ccceeeehhh----hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 7999999999 99999999999999999999999999999996 57789999999999999
Q ss_pred HHHHHHHHhCCccccccCCccc
Q 029910 162 TLRSMEESLGLIVAEVPINISE 183 (185)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~ 183 (185)
.+.++|+.+|.+++++|..+..
T Consensus 433 ~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 433 NLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred hHHHHHHHhccccccCCCcCCc
Confidence 9999999999999999988754
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=2.1e-28 Score=216.79 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=135.3
Q ss_pred EecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
.|...+.+..+|..++. .....++||||++++.|+.++..|...| +.+..+||+|++++|.+++++|++|
T Consensus 235 ~~~~~~~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l~~F~~g-------- 304 (423)
T PRK04837 235 FYPSNEEKMRLLQTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRILEEFTRG-------- 304 (423)
T ss_pred EeCCHHHHHHHHHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHHHHHcC--------
Confidence 44455666667776666 4556899999999999999999999988 8999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHH
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVV 161 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~ 161 (185)
.+++|||||+ ++||+|+|++++|||||+|.++++|+||+||+ .|+.|.+|+|+++.+..
T Consensus 305 ---------------~~~vLVaTdv----~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 305 ---------------DLDILVATDV----AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred ---------------CCcEEEEech----hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 6999999999 99999999999999999999999999999997 56779999999999999
Q ss_pred HHHHHHHHhCCccccccCCcccc
Q 029910 162 TLRSMEESLGLIVAEVPINISEI 184 (185)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~ 184 (185)
.+..+++.++..+++.+.+..++
T Consensus 366 ~~~~i~~~~~~~~~~~~~~~~~~ 388 (423)
T PRK04837 366 NLPAIETYIGHSIPVSKYDSDAL 388 (423)
T ss_pred HHHHHHHHhCCCCCCccCChhhh
Confidence 99999999999887776665543
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.96 E-value=3.3e-28 Score=216.36 Aligned_cols=139 Identities=18% Similarity=0.362 Sum_probs=121.3
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|++...+...+-|..+++ .....|+|||+|+++.|+.|++.|...| +++..|||+.++++|.-+++.|+.+
T Consensus 496 v~m~~ed~k~kkL~eil~-~~~~ppiIIFvN~kk~~d~lAk~LeK~g-~~~~tlHg~k~qeQRe~aL~~fr~~------- 566 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILE-SNFDPPIIIFVNTKKGADALAKILEKAG-YKVTTLHGGKSQEQRENALADFREG------- 566 (673)
T ss_pred EEEecchHHHHHHHHHHH-hCCCCCEEEEEechhhHHHHHHHHhhcc-ceEEEeeCCccHHHHHHHHHHHHhc-------
Confidence 444544444555555565 4466899999999999999999999999 8999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchH
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEV 160 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~ 160 (185)
..+||||||+ ++||+|+|+|.+|||||++.+.++|+|||||+ +|+.|.+|+|+++.|-
T Consensus 567 ----------------t~dIlVaTDv----AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 567 ----------------TGDILVATDV----AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred ----------------CCCEEEEecc----cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchh
Confidence 6999999999 99999999999999999999999999999997 6788999999999887
Q ss_pred HHHHHHHHHh
Q 029910 161 VTLRSMEESL 170 (185)
Q Consensus 161 ~~~~~l~~~~ 170 (185)
..|.+|.+.+
T Consensus 627 ~v~ydLkq~l 636 (673)
T KOG0333|consen 627 AVFYDLKQAL 636 (673)
T ss_pred HHHHHHHHHH
Confidence 7666665553
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.4e-28 Score=208.23 Aligned_cols=144 Identities=24% Similarity=0.399 Sum_probs=131.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
+..-+..+|.. .+ ......++||+|+..+|+.|+..|...+ +.+..+|+.|++.+|...+.+|+++
T Consensus 238 kdaYLv~~Lr~-~~-~~~~~simIFvnttr~cQ~l~~~l~~le-~r~~~lHs~m~Q~eR~~aLsrFrs~----------- 303 (442)
T KOG0340|consen 238 KDAYLVHLLRD-FE-NKENGSIMIFVNTTRECQLLSMTLKNLE-VRVVSLHSQMPQKERLAALSRFRSN----------- 303 (442)
T ss_pred hHHHHHHHHhh-hh-hccCceEEEEeehhHHHHHHHHHHhhhc-eeeeehhhcchHHHHHHHHHHHhhc-----------
Confidence 44556666666 33 2256899999999999999999999998 9999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~ 164 (185)
..++|||||+ ++||+|+|.|++|||||+|.+|.+|+||+||+ +|+.|.+|+||+..|++.+.
T Consensus 304 ------------~~~iliaTDV----AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 304 ------------AARILIATDV----ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQ 367 (442)
T ss_pred ------------CccEEEEech----hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHH
Confidence 7999999999 99999999999999999999999999999995 78999999999999999999
Q ss_pred HHHHHhCCccccccCC
Q 029910 165 SMEESLGLIVAEVPIN 180 (185)
Q Consensus 165 ~l~~~~~~~~~~~~~~ 180 (185)
.+|+.+|.++.+.+..
T Consensus 368 aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 368 AIEEEIGKKLTEYNKV 383 (442)
T ss_pred HHHHHHhccccccccc
Confidence 9999999999987643
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=1.5e-26 Score=207.12 Aligned_cols=145 Identities=22% Similarity=0.345 Sum_probs=130.9
Q ss_pred EecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
.+...+...+++..++. .....++||||++++.++.+++.|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 225 ~~~~~~~k~~~l~~l~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g-------- 294 (456)
T PRK10590 225 HFVDKKRKRELLSQMIG-KGNWQQVLVFTRTKHGANHLAEQLNKDG-IRSAAIHGNKSQGARTRALADFKSG-------- 294 (456)
T ss_pred EEcCHHHHHHHHHHHHH-cCCCCcEEEEcCcHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHcC--------
Confidence 34455566777887666 5667899999999999999999999988 8999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHH
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVV 161 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~ 161 (185)
.++||||||+ ++||+|+|++++|||||+|.++++|+||+||++ +..|.+++|+...|..
T Consensus 295 ---------------~~~iLVaTdv----~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 295 ---------------DIRVLVATDI----AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred ---------------CCcEEEEccH----HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 7999999999 999999999999999999999999999999974 5679999999999999
Q ss_pred HHHHHHHHhCCccccc
Q 029910 162 TLRSMEESLGLIVAEV 177 (185)
Q Consensus 162 ~~~~l~~~~~~~~~~~ 177 (185)
.++.+++.++..+++.
T Consensus 356 ~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 356 LLRDIEKLLKKEIPRI 371 (456)
T ss_pred HHHHHHHHhcCCCccc
Confidence 9999999988887543
No 10
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=7.9e-27 Score=213.33 Aligned_cols=132 Identities=21% Similarity=0.362 Sum_probs=123.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.++||||+++++|+.|++.|...+ +.+..+||++++++|.+++++|++| ..+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~il~~F~~G-----------------------~~~IL 431 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWVLNEFKTG-----------------------KSPIM 431 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHHHHHHhcC-----------------------CCcEE
Confidence 56899999999999999999999887 8999999999999999999999999 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHhCCccccccCCc
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
||||+ ++||+|+|++++|||||+|.++++|+||+||+ .|+.|.+++|+++.+......+.+.+....+++|..+
T Consensus 432 VaTdv----~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l 507 (545)
T PTZ00110 432 IATDV----ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPEL 507 (545)
T ss_pred EEcch----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHH
Confidence 99999 99999999999999999999999999999997 5677999999999999999999999888888888766
Q ss_pred cc
Q 029910 182 SE 183 (185)
Q Consensus 182 ~~ 183 (185)
.+
T Consensus 508 ~~ 509 (545)
T PTZ00110 508 EK 509 (545)
T ss_pred HH
Confidence 54
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=2.6e-26 Score=205.35 Aligned_cols=143 Identities=22% Similarity=0.368 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
..+.+.+.+..++. .....++||||++++.++.+++.|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 225 ~~~~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~-~~v~~~hg~~~~~eR~~~l~~F~~g----------- 291 (460)
T PRK11776 225 SPDERLPALQRLLL-HHQPESCVVFCNTKKECQEVADALNAQG-FSALALHGDLEQRDRDQVLVRFANR----------- 291 (460)
T ss_pred CcHHHHHHHHHHHH-hcCCCceEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHcC-----------
Confidence 33445556665555 4556899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~ 164 (185)
..++|||||+ ++||+|+|++++|||||+|.++++|+||+||+ .|+.|.+++|+.+.|...+.
T Consensus 292 ------------~~~vLVaTdv----~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~ 355 (460)
T PRK11776 292 ------------SCSVLVATDV----AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRAN 355 (460)
T ss_pred ------------CCcEEEEecc----cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHH
Confidence 6999999999 99999999999999999999999999999997 45679999999999999999
Q ss_pred HHHHHhCCcccccc
Q 029910 165 SMEESLGLIVAEVP 178 (185)
Q Consensus 165 ~l~~~~~~~~~~~~ 178 (185)
.+++.++..++..+
T Consensus 356 ~i~~~~~~~~~~~~ 369 (460)
T PRK11776 356 AIEDYLGRKLNWEP 369 (460)
T ss_pred HHHHHhCCCCceec
Confidence 99999988776543
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=3.4e-26 Score=210.21 Aligned_cols=145 Identities=20% Similarity=0.362 Sum_probs=128.6
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
...+.+..++..++. ...+.++||||+|++.++.|++.|...+ +.+..+||+|++.+|.+++++|+++
T Consensus 239 ~~~~~k~~~L~~ll~-~~~~~k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il~~Fr~G---------- 306 (572)
T PRK04537 239 PADEEKQTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLLNRFQKG---------- 306 (572)
T ss_pred cCHHHHHHHHHHHHh-cccCCcEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHHcC----------
Confidence 344445555555555 5567899999999999999999999998 8999999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHH
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTL 163 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~ 163 (185)
..+||||||+ ++||+|+|++++|||||+|.++++|+||+||+ .|..|.+|+|+...+...+
T Consensus 307 -------------~~~VLVaTdv----~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l 369 (572)
T PRK04537 307 -------------QLEILVATDV----AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369 (572)
T ss_pred -------------CCeEEEEehh----hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHH
Confidence 7999999999 99999999999999999999999999999997 4577999999999999999
Q ss_pred HHHHHHhCCccccccC
Q 029910 164 RSMEESLGLIVAEVPI 179 (185)
Q Consensus 164 ~~l~~~~~~~~~~~~~ 179 (185)
..+++.++.++...+.
T Consensus 370 ~~i~~~~~~~~~~~~~ 385 (572)
T PRK04537 370 PDIEAYIEQKIPVEPV 385 (572)
T ss_pred HHHHHHHcCCCCcccc
Confidence 9999999888765443
No 13
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.8e-26 Score=196.12 Aligned_cols=129 Identities=21% Similarity=0.387 Sum_probs=118.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
..-.+.||||.|+++|.+|+..|+..| ..+..|||+|...+|..++++||.| ..++
T Consensus 328 ~tigqsiIFc~tk~ta~~l~~~m~~~G-h~V~~l~G~l~~~~R~~ii~~Fr~g-----------------------~~kV 383 (477)
T KOG0332|consen 328 LTIGQSIIFCHTKATAMWLYEEMRAEG-HQVSLLHGDLTVEQRAAIIDRFREG-----------------------KEKV 383 (477)
T ss_pred hhhhheEEEEeehhhHHHHHHHHHhcC-ceeEEeeccchhHHHHHHHHHHhcC-----------------------cceE
Confidence 344899999999999999999999999 6999999999999999999999999 7999
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCC------CHHHHHHHHhhh--cCCCCEEEEEeeC-chHHHHHHHHHHhCCc
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTC--LAADGSVINIVVG-GEVVTLRSMEESLGLI 173 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~------~~~~yiqR~GR~--~~~~g~~i~~v~~-~e~~~~~~l~~~~~~~ 173 (185)
||+|++ ++||+|++.|++|||||+|. +.++|+||+||+ .|+.|.+|+|+.. ...+.+..++++.+.+
T Consensus 384 LitTnV----~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 384 LITTNV----CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred EEEech----hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999 99999999999999999995 789999999997 5788999999975 5678888999999887
Q ss_pred cccccC
Q 029910 174 VAEVPI 179 (185)
Q Consensus 174 ~~~~~~ 179 (185)
+.++..
T Consensus 460 i~~~~~ 465 (477)
T KOG0332|consen 460 IKRLDP 465 (477)
T ss_pred ceecCC
Confidence 776654
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=1.5e-25 Score=198.93 Aligned_cols=140 Identities=17% Similarity=0.312 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
.+.+.+++..++. .....++||||+++++++.++..|...+ +.+..+||+|++.+|..++++|++|
T Consensus 229 ~~~k~~~l~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~R~~~l~~f~~G------------ 294 (434)
T PRK11192 229 LEHKTALLCHLLK-QPEVTRSIVFVRTRERVHELAGWLRKAG-INCCYLEGEMVQAKRNEAIKRLTDG------------ 294 (434)
T ss_pred HHHHHHHHHHHHh-cCCCCeEEEEeCChHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHhCC------------
Confidence 4667788888776 5567899999999999999999999987 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHH
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~ 165 (185)
..+||||||+ +++|+|+|++++|||||+|.+.+.|+||+||+ .|..|.+++++...|...+..
T Consensus 295 -----------~~~vLVaTd~----~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 295 -----------RVNVLVATDV----AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 359 (434)
T ss_pred -----------CCcEEEEccc----cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHH
Confidence 7999999999 99999999999999999999999999999997 456799999999999999999
Q ss_pred HHHHhCCcccc
Q 029910 166 MEESLGLIVAE 176 (185)
Q Consensus 166 l~~~~~~~~~~ 176 (185)
+++.+...+.+
T Consensus 360 i~~~~~~~~~~ 370 (434)
T PRK11192 360 IERYIEEPLKA 370 (434)
T ss_pred HHHHHhccccc
Confidence 99887766543
No 15
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.7e-25 Score=201.03 Aligned_cols=139 Identities=24% Similarity=0.361 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
......++..++. .....++||||+++++++.+++.|...+ +.+..+||+++.++|.+++++|++|
T Consensus 319 ~~~k~~~l~~ll~-~~~~~~~IVF~~s~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~Fr~G------------ 384 (475)
T PRK01297 319 GSDKYKLLYNLVT-QNPWERVMVFANRKDEVRRIEERLVKDG-INAAQLSGDVPQHKRIKTLEGFREG------------ 384 (475)
T ss_pred chhHHHHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHhCC------------
Confidence 3445566666665 5566899999999999999999999888 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHH
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~ 165 (185)
.+++||||++ +++|+|+|++++||+||+|.++.+|+||+||++ |+.|.+++|+..+|...+..
T Consensus 385 -----------~~~vLvaT~~----l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~ 449 (475)
T PRK01297 385 -----------KIRVLVATDV----AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPE 449 (475)
T ss_pred -----------CCcEEEEccc----cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHH
Confidence 7999999999 999999999999999999999999999999974 56799999999999999999
Q ss_pred HHHHhCCccc
Q 029910 166 MEESLGLIVA 175 (185)
Q Consensus 166 l~~~~~~~~~ 175 (185)
+++.++.++.
T Consensus 450 ~~~~~~~~~~ 459 (475)
T PRK01297 450 IEELLGRKIS 459 (475)
T ss_pred HHHHhCCCCc
Confidence 9999998874
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=9.8e-26 Score=204.97 Aligned_cols=132 Identities=21% Similarity=0.331 Sum_probs=120.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..++||||+++..++.+++.|....++.+..+||+|++.+|..++++|++| ..+|||
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-----------------------~~~ILV 423 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-----------------------EVPVIV 423 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-----------------------CCCEEE
Confidence 468999999999999999999864338999999999999999999999999 799999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHHHhCCccccccCCcc
Q 029910 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~~~~~ 182 (185)
|||+ ++||+|+|++++|||||+|.++++|+||+||+| |..|.+++|++.++...+..+.+.+....+++|.++.
T Consensus 424 aTdv----l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 499 (518)
T PLN00206 424 ATGV----LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELA 499 (518)
T ss_pred EecH----hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999 999999999999999999999999999999974 5679999999999998999998888877777776654
Q ss_pred c
Q 029910 183 E 183 (185)
Q Consensus 183 ~ 183 (185)
+
T Consensus 500 ~ 500 (518)
T PLN00206 500 N 500 (518)
T ss_pred h
Confidence 3
No 17
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=1.3e-25 Score=196.43 Aligned_cols=148 Identities=25% Similarity=0.479 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+...+.+..+.. .....++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|++|
T Consensus 252 ~~~~~~l~~~~~-~~~~~~~ivF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~R~~i~~~f~~g------------- 316 (401)
T PTZ00424 252 EWKFDTLCDLYE-TLTITQAIIYCNTRRKVDYLTKKMHERD-FTVSCMHGDMDQKDRDLIMREFRSG------------- 316 (401)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEEecCcHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 334444544444 4455799999999999999999999887 8999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHH
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l 166 (185)
.+++||||++ +++|+|+|++++||+||+|.+..+|+||+||++ |..|.|+.|+++.+...+..+
T Consensus 317 ----------~~~vLvaT~~----l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 317 ----------STRVLITTDL----LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred ----------CCCEEEEccc----ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 7999999999 999999999999999999999999999999974 567999999999999999999
Q ss_pred HHHhCCccccccCCccccC
Q 029910 167 EESLGLIVAEVPINISEIL 185 (185)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l 185 (185)
++.++..+++.++...+.|
T Consensus 383 e~~~~~~~~~~~~~~~~~~ 401 (401)
T PTZ00424 383 ERHYNTQIEEMPMEVADYL 401 (401)
T ss_pred HHHHCCcccccCcchhhcC
Confidence 9999999999998877653
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=1.6e-25 Score=207.68 Aligned_cols=142 Identities=20% Similarity=0.328 Sum_probs=127.1
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
.+.|..++. .....++||||+|+..++.|++.|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 233 ~~~L~~~L~-~~~~~~~IVF~~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~il~~Fr~G---------------- 294 (629)
T PRK11634 233 NEALVRFLE-AEDFDAAIIFVRTKNATLEVAEALERNG-YNSAALNGDMNQALREQTLERLKDG---------------- 294 (629)
T ss_pred HHHHHHHHH-hcCCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHHHHHHhCC----------------
Confidence 333443344 3445799999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEES 169 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~ 169 (185)
+.+||||||+ +++|+|+|++++|||||+|.++++|+||+||+ .|+.|.+++|+.+.+...++.+++.
T Consensus 295 -------~~~ILVATdv----~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 295 -------RLDILIATDV----AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred -------CCCEEEEcch----HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHH
Confidence 7999999999 99999999999999999999999999999997 4667999999999999999999999
Q ss_pred hCCccccccCCcc
Q 029910 170 LGLIVAEVPINIS 182 (185)
Q Consensus 170 ~~~~~~~~~~~~~ 182 (185)
++..+++++++-.
T Consensus 364 ~~~~i~~~~~p~~ 376 (629)
T PRK11634 364 MKLTIPEVELPNA 376 (629)
T ss_pred hCCCcceecCCcH
Confidence 9999988766544
No 19
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8e-26 Score=194.87 Aligned_cols=144 Identities=27% Similarity=0.547 Sum_probs=133.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|.+.++++.+ .-.+.+||||+++.+..+..+|...+ ..+..+||+|.+.+|..++.+|+.|
T Consensus 252 k~~~l~dl~~-------~~~q~~if~nt~r~v~~l~~~L~~~~-~~~s~~~~d~~q~~R~~~~~ef~~g----------- 312 (397)
T KOG0327|consen 252 KLDTLCDLYR-------RVTQAVIFCNTRRKVDNLTDKLRAHG-FTVSAIHGDMEQNERDTLMREFRSG----------- 312 (397)
T ss_pred cccHHHHHHH-------hhhcceEEecchhhHHHHHHHHhhCC-ceEEEeecccchhhhhHHHHHhhcC-----------
Confidence 3445555555 23799999999999999999998888 8999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~ 164 (185)
.+++||+||. ++||+|+.++++|||||+|.+.++|+||+||+ .|++|.+|+|++..++..++
T Consensus 313 ------------ssrvlIttdl----~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk 376 (397)
T KOG0327|consen 313 ------------SSRVLITTDL----LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLK 376 (397)
T ss_pred ------------CceEEeeccc----cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHH
Confidence 6999999999 99999999999999999999999999999997 68999999999999999999
Q ss_pred HHHHHhCCccccccCCccccC
Q 029910 165 SMEESLGLIVAEVPINISEIL 185 (185)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~l 185 (185)
+++++++..++++|.++.+++
T Consensus 377 ~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 377 DIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hHHHhcCCcceecccchhhcC
Confidence 999999999999999998875
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=5.6e-25 Score=195.51 Aligned_cols=151 Identities=22% Similarity=0.319 Sum_probs=132.4
Q ss_pred ecchHHHHHHHHHHHcc-------CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccc
Q 029910 5 FTFQETLVELLHLVVAG-------RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 77 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~-------~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~ 77 (185)
+.+.++..+|++.|... ...+++++|||+|++.|+.|+.+|...+ +++..+||+-++.+|.+.+..|+.|
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-~~~~sIhg~~tq~er~~al~~Fr~g-- 386 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG-YPAKSIHGDRTQIEREQALNDFRNG-- 386 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC-CCceeecchhhhhHHHHHHHHhhcC--
Confidence 33455555666554421 2223589999999999999999999998 8999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEe
Q 029910 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIV 155 (185)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v 155 (185)
+.++||||++ ++||+|+|+|++|||||+|.+.++|+|||||+ .|+.|.+++|+
T Consensus 387 ---------------------~~pvlVaT~V----aaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 387 ---------------------KAPVLVATNV----AARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred ---------------------CcceEEEehh----hhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 7999999999 99999999999999999999999999999997 67889999999
Q ss_pred eCchHHHHHHHHHHhCCccccccCCccc
Q 029910 156 VGGEVVTLRSMEESLGLIVAEVPINISE 183 (185)
Q Consensus 156 ~~~e~~~~~~l~~~~~~~~~~~~~~~~~ 183 (185)
...+....+.+.+.+.-.-+++|..+.+
T Consensus 442 n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 442 NEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred ccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 9988888899999988888888887765
No 21
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.1e-25 Score=193.37 Aligned_cols=147 Identities=22% Similarity=0.344 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
...++++...+++...+..|+||||..+..|+.|+.-|.-.| +.+-.|||+-++.+|...++.|++|
T Consensus 448 d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g-i~~q~lHG~r~Q~DrE~al~~~ksG------------ 514 (629)
T KOG0336|consen 448 DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG-ISSQSLHGNREQSDREMALEDFKSG------------ 514 (629)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc-cchhhccCChhhhhHHHHHHhhhcC------------
Confidence 445568888888878899999999999999999999998888 9999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHH
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~ 165 (185)
.++|||+||+ ++||+|+|++.+|+|||+|.+++.|+||+||+ +|+.|.+|+|++.+|-.+...
T Consensus 515 -----------~vrILvaTDl----aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 515 -----------EVRILVATDL----ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEE 579 (629)
T ss_pred -----------ceEEEEEech----hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHH
Confidence 6999999999 99999999999999999999999999999996 678899999999999999988
Q ss_pred HHHHhCCccccccCCcc
Q 029910 166 MEESLGLIVAEVPINIS 182 (185)
Q Consensus 166 l~~~~~~~~~~~~~~~~ 182 (185)
+-+.+...-+++|.++.
T Consensus 580 LI~ILe~aeQevPdeL~ 596 (629)
T KOG0336|consen 580 LIQILERAEQEVPDELV 596 (629)
T ss_pred HHHHHHHhhhhCcHHHH
Confidence 88888888788876654
No 22
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.91 E-value=4.8e-24 Score=188.54 Aligned_cols=135 Identities=20% Similarity=0.292 Sum_probs=117.5
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (185)
++-.+++......++||||+|+..+.+.++.|.... +.+..+||++++..|..+..+|++.
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk~~Q~kRT~~~~~F~ka------------------ 379 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGKQKQNKRTSTFFEFCKA------------------ 379 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcCCcccccchHHHHHhhc------------------
Confidence 333334424445999999999999999999999776 8999999999999999999999998
Q ss_pred CCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHHHhC
Q 029910 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEESLG 171 (185)
Q Consensus 94 ~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~~~~ 171 (185)
..-||||||+ ++||+|+|+|++||+||+|.++++||||+||++ |..|.++.+..+.|..+++.+. .
T Consensus 380 -----esgIL~cTDV----aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~ 447 (543)
T KOG0342|consen 380 -----ESGILVCTDV----AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---K 447 (543)
T ss_pred -----ccceEEecch----hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---h
Confidence 6889999999 999999999999999999999999999999975 4558999999999999999998 3
Q ss_pred CccccccC
Q 029910 172 LIVAEVPI 179 (185)
Q Consensus 172 ~~~~~~~~ 179 (185)
..+.+.+.
T Consensus 448 lpl~~~e~ 455 (543)
T KOG0342|consen 448 LPLEEFEF 455 (543)
T ss_pred CCCcccCC
Confidence 44444443
No 23
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.1e-23 Score=187.60 Aligned_cols=129 Identities=22% Similarity=0.360 Sum_probs=113.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+.+++..+.. ..+++++||||++++.++.++..|...| +.+..+||+|++++|.+++++|++|
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g-~~~~~~H~~l~~~eR~~i~~~F~~g--------------- 275 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLG-IAAGAYHAGLEISARDDVHHKFQRD--------------- 275 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcC-CCeeEeeCCCCHHHHHHHHHHHHcC---------------
Confidence 3344444332 4556778999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHH
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEE 168 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~ 168 (185)
..++||||++ +++|+|+|+|++||||++|.+++.|+||+||+ .|.+|.|+.|+.+.|...++.+..
T Consensus 276 --------~~~vLVaT~~----~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 276 --------EIQVVVATVA----FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred --------CCcEEEEech----hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 7999999999 99999999999999999999999999999997 456789999999888876666543
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.90 E-value=2.5e-23 Score=186.35 Aligned_cols=148 Identities=18% Similarity=0.305 Sum_probs=126.2
Q ss_pred EecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
+.+..+.++++|-.++. .....+.|||++|++++.++++.+... +++....|||.|++..|..++.+|-+.
T Consensus 293 ~~v~l~~Ki~~L~sFI~-shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~------- 364 (758)
T KOG0343|consen 293 VIVPLEDKIDMLWSFIK-SHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK------- 364 (758)
T ss_pred EEEehhhHHHHHHHHHH-hccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh-------
Confidence 34466777888877666 677799999999999999999999765 449999999999999999999999997
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCch-
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGE- 159 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e- 159 (185)
.--||+|||+ ++||+|||.|+|||+||.|.++++|+||+||++ ...|.++.++++.+
T Consensus 365 ----------------~~~vLF~TDv----~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 365 ----------------RAVVLFCTDV----AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred ----------------cceEEEeehh----hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 6779999999 999999999999999999999999999999975 45699999999887
Q ss_pred HHHHHHHHHHhCCccccccCC
Q 029910 160 VVTLRSMEESLGLIVAEVPIN 180 (185)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~ 180 (185)
..++..+++.. +.+.++..+
T Consensus 425 E~~l~~Lq~k~-I~i~~i~i~ 444 (758)
T KOG0343|consen 425 EAMLKKLQKKK-IPIKEIKID 444 (758)
T ss_pred HHHHHHHHHcC-CCHHhhccC
Confidence 56667776654 555555444
No 25
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.90 E-value=8.7e-24 Score=183.38 Aligned_cols=144 Identities=21% Similarity=0.351 Sum_probs=122.4
Q ss_pred ecc-hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 5 FTF-QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 5 ~~~-~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
|++ ..++.-||+-|.+ ...|++|||..+..++.+.++|.-.| +.+..+||+.++++|...++.||.|
T Consensus 403 yVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKG-VEavaIHGGKDQedR~~ai~afr~g-------- 470 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKG-VEAVAIHGGKDQEDRHYAIEAFRAG-------- 470 (610)
T ss_pred HHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHcc-ceeEEeecCcchhHHHHHHHHHhcC--------
Confidence 454 3455667777533 44799999999999999999999998 9999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCc-hH
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGG-EV 160 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~-e~ 160 (185)
+.++||+||+ ++.|+|+|++.+|||||+|..++.|+||+||++ |+.|.+.+|++.+ +.
T Consensus 471 ---------------kKDVLVATDV----ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 471 ---------------KKDVLVATDV----ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEE 531 (610)
T ss_pred ---------------CCceEEEecc----hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchH
Confidence 7999999999 999999999999999999999999999999974 5679999999875 56
Q ss_pred HHHHHHHHHhCCccccccC
Q 029910 161 VTLRSMEESLGLIVAEVPI 179 (185)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~ 179 (185)
..+..+...+--.-+++|.
T Consensus 532 svLlDLK~LL~EakQ~vP~ 550 (610)
T KOG0341|consen 532 SVLLDLKHLLQEAKQEVPP 550 (610)
T ss_pred HHHHHHHHHHHHhhccCCH
Confidence 6666666665544444443
No 26
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=9.9e-23 Score=179.67 Aligned_cols=143 Identities=14% Similarity=0.234 Sum_probs=118.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.+...+-+++. ....+++|||.+|+..+++....|... +...+..+||.|++.+|.++++.|+..
T Consensus 241 eK~~~lv~~L~-~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~------------- 306 (567)
T KOG0345|consen 241 EKLSQLVHLLN-NNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL------------- 306 (567)
T ss_pred HHHHHHHHHHh-ccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc-------------
Confidence 33333333455 466699999999999999999999876 568999999999999999999999996
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHH
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l 166 (185)
+..+|+|||+ ++||+|+|++++||+||+|.+++.|+||+||+ .|+.|.+|.|+.+.|..+..-+
T Consensus 307 ----------~~~vl~~TDV----aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 307 ----------SNGVLFCTDV----AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred ----------cCceEEeehh----hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 6889999999 99999999999999999999999999999997 6788999999999776655444
Q ss_pred HHHhCCccccccCC
Q 029910 167 EESLGLIVAEVPIN 180 (185)
Q Consensus 167 ~~~~~~~~~~~~~~ 180 (185)
.-.-...++++..+
T Consensus 373 ~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 373 RIKGKVELERIDTE 386 (567)
T ss_pred HhcCccchhhhccc
Confidence 43333445544433
No 27
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=1.5e-22 Score=187.27 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=107.9
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
...+.++||||+|++.++.++..|...| +.+..+||+|++++|.+++++|+.+ ..+
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g-~~v~~~Ha~l~~~~R~~i~~~F~~g-----------------------~~~ 288 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLDNDVRADVQEAFQRD-----------------------DLQ 288 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHHCC-----------------------CCC
Confidence 3456899999999999999999999998 8999999999999999999999999 799
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSME 167 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~ 167 (185)
|||||++ +++|+|+|+|++|||||+|.+.++|+||+||++ |.+|.|++|+++.|...++.+.
T Consensus 289 VLVaT~a----~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 289 IVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEech----hhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999974 4568999999988876655443
No 28
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=1.2e-22 Score=195.29 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=108.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.....+.||||++++.++.++..|...| +.+..+||+|++++|..++++|+.| .++
T Consensus 677 ~~~~esgIIYC~SRke~E~LAe~L~~~G-ika~~YHAGLs~eeR~~vqe~F~~G-----------------------ei~ 732 (1195)
T PLN03137 677 NHFDECGIIYCLSRMDCEKVAERLQEFG-HKAAFYHGSMDPAQRAFVQKQWSKD-----------------------EIN 732 (1195)
T ss_pred cccCCCceeEeCchhHHHHHHHHHHHCC-CCeeeeeCCCCHHHHHHHHHHHhcC-----------------------CCc
Confidence 4445789999999999999999999998 8999999999999999999999999 799
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEE 168 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~ 168 (185)
|||||++ +++|+|+|+|++|||||+|.+++.|+||+||+| |.+|.||+|+...|...++.+..
T Consensus 733 VLVATdA----FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 733 IICATVA----FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EEEEech----hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999974 56799999998877766665543
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1e-22 Score=183.01 Aligned_cols=146 Identities=21% Similarity=0.366 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
+...++-.+..++. ..-..|.+||+.+.++|.+|.+.|....++.+.++||+.++.+|...+++||.|
T Consensus 370 se~~K~lA~rq~v~-~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g----------- 437 (593)
T KOG0344|consen 370 SEKGKLLALRQLVA-SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG----------- 437 (593)
T ss_pred cchhHHHHHHHHHh-ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-----------
Confidence 34444444455455 445689999999999999999999655559999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~ 164 (185)
.+.+|||||+ ++||+|+.++++|||||+|.+..+|+||+||+ +|++|.+|+|++..+...++
T Consensus 438 ------------~IwvLicTdl----l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 438 ------------KIWVLICTDL----LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIR 501 (593)
T ss_pred ------------CeeEEEehhh----hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhh
Confidence 7999999999 99999999999999999999999999999996 67889999999999999999
Q ss_pred HHHHHhCCccccccCC
Q 029910 165 SMEESLGLIVAEVPIN 180 (185)
Q Consensus 165 ~l~~~~~~~~~~~~~~ 180 (185)
.+.+.+....-++|..
T Consensus 502 ~iae~~~~sG~evpe~ 517 (593)
T KOG0344|consen 502 SIAEVMEQSGCEVPEK 517 (593)
T ss_pred hHHHHHHHcCCcchHH
Confidence 8888776655555543
No 30
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.4e-23 Score=182.93 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=112.0
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+....++|||+.|+++|..+.-.|--.| +++.-+||.+++++|...++.|+.. .++
T Consensus 423 rtf~~~~ivFv~tKk~AHRl~IllGLlg-l~agElHGsLtQ~QRlesL~kFk~~-----------------------eid 478 (691)
T KOG0338|consen 423 RTFQDRTIVFVRTKKQAHRLRILLGLLG-LKAGELHGSLTQEQRLESLEKFKKE-----------------------EID 478 (691)
T ss_pred HhcccceEEEEehHHHHHHHHHHHHHhh-chhhhhcccccHHHHHHHHHHHHhc-----------------------cCC
Confidence 4445899999999999999988887777 8999999999999999999999999 699
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEES 169 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~ 169 (185)
+|||||+ ++||+|++.|..||||++|.+.+.|+||+||+ +|+.|.+++|+...|...++.+-+.
T Consensus 479 vLiaTDv----AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 479 VLIATDV----ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EEEEech----hhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999 99999999999999999999999999999996 7899999999999999988877665
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=1.6e-22 Score=190.78 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=119.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC--------CCceEEEEecCCCHHHHHHHHHHHhcccccccc
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--------~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~ 81 (185)
...+++..++. .+.++||||+|++.++.++..|+.. + ..+..+||++++++|.+++++|++|
T Consensus 259 ~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~-~~v~~~hgg~~~~eR~~ie~~f~~G------ 328 (742)
T TIGR03817 259 EAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLA-ERVAAYRAGYLPEDRRELERALRDG------ 328 (742)
T ss_pred HHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc-cchhheecCCCHHHHHHHHHHHHcC------
Confidence 34566666555 2479999999999999999988753 3 5788999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEee--C
Q 029910 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVV--G 157 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~--~ 157 (185)
++++|||||+ +++|+|+|++++|||||+|.+.++|+||+||+| |+.|.+++++. +
T Consensus 329 -----------------~i~vLVaTd~----lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~ 387 (742)
T TIGR03817 329 -----------------ELLGVATTNA----LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDP 387 (742)
T ss_pred -----------------CceEEEECch----HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCCh
Confidence 7999999999 999999999999999999999999999999985 45689998886 3
Q ss_pred chHHHHHHHHHHhCCccccccCC
Q 029910 158 GEVVTLRSMEESLGLIVAEVPIN 180 (185)
Q Consensus 158 ~e~~~~~~l~~~~~~~~~~~~~~ 180 (185)
.|...+...++.++..+++...+
T Consensus 388 ~d~~~~~~~~~~~~~~~e~~~~~ 410 (742)
T TIGR03817 388 LDTYLVHHPEALFDRPVEATVFD 410 (742)
T ss_pred HHHHHHhCHHHHhcCCCccceeC
Confidence 46677788888888887765443
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2e-22 Score=180.54 Aligned_cols=122 Identities=23% Similarity=0.355 Sum_probs=114.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
-+.++|||||+.+.+..|+-.|...+ |....||..|.+.+|.+.+++|++. ...+|
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~-i~p~~LHA~M~QKqRLknLEkF~~~-----------------------~~~VL 517 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLD-IPPLPLHASMIQKQRLKNLEKFKQS-----------------------PSGVL 517 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHhHHHHhcC-----------------------CCeEE
Confidence 35899999999999999999999998 9999999999999999999999998 68899
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHhCCc
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGLI 173 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~~~~ 173 (185)
||||+ ++||+|+|.|.+||+|.+|.+.+-|+||.||+ +++.|+.+.++.+.+...+..+.+.+...
T Consensus 518 iaTDV----AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 518 IATDV----AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred Eeehh----hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 99999 99999999999999999999999999999996 56779999999999999999888887644
No 33
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=9.3e-22 Score=175.08 Aligned_cols=155 Identities=18% Similarity=0.285 Sum_probs=139.9
Q ss_pred CeeEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccc
Q 029910 1 MSVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (185)
Q Consensus 1 ~~v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~ 80 (185)
++|+.....++-.|+++|.+ .....++|||+..+..++.++..|.-.+ +++..+||+|.+.+|.+++.+|+++
T Consensus 445 V~V~~s~~~Kl~wl~~~L~~-f~S~gkvlifVTKk~~~e~i~a~Lklk~-~~v~llhgdkdqa~rn~~ls~fKkk----- 517 (731)
T KOG0339|consen 445 VSVCPSEEKKLNWLLRHLVE-FSSEGKVLIFVTKKADAEEIAANLKLKG-FNVSLLHGDKDQAERNEVLSKFKKK----- 517 (731)
T ss_pred eeeccCcHHHHHHHHHHhhh-hccCCcEEEEEeccCCHHHHHHHhcccc-ceeeeecCchhhHHHHHHHHHHhhc-----
Confidence 45677778888889999777 6777899999999999999999999998 8999999999999999999999998
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCc
Q 029910 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGG 158 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~ 158 (185)
..+|||+||+ ++||+|+|++..|||||+-.++++|.||+||+ .|..|+++++|+..
T Consensus 518 ------------------~~~VlvatDv----aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeK 575 (731)
T KOG0339|consen 518 ------------------RKPVLVATDV----AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEK 575 (731)
T ss_pred ------------------CCceEEEeeH----hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechh
Confidence 7999999999 99999999999999999999999999999996 56679999999999
Q ss_pred hHHHHHHHHHHhCCccccccCCcccc
Q 029910 159 EVVTLRSMEESLGLIVAEVPINISEI 184 (185)
Q Consensus 159 e~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (185)
|..+.-.|.+.+...-+.+|.++.+|
T Consensus 576 Da~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 576 DAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred hHHHhhHHHHHHhhccccCChHHHHH
Confidence 99988888888777777777766543
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=2.9e-21 Score=178.00 Aligned_cols=115 Identities=21% Similarity=0.333 Sum_probs=105.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.++||||+|++.++.+++.|...| +.+..+||+|+.++|..++++|+.| ..++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g-~~~~~~H~~l~~~~R~~i~~~F~~g-----------------------~~~vl 278 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQG-ISALAYHAGLSNKVRAENQEDFLYD-----------------------DVKVM 278 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHcC-----------------------CCcEE
Confidence 36899999999999999999999988 8999999999999999999999999 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHH
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l 166 (185)
|||++ +++|+|+|++++||+||+|.+.+.|+||+||++ |.+|.|+.++.+.|...++.+
T Consensus 279 VaT~a----~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 279 VATNA----FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred EEech----hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 99999 999999999999999999999999999999985 566899999888776655544
No 35
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=173.76 Aligned_cols=134 Identities=22% Similarity=0.361 Sum_probs=113.4
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC---------------------CCceEEEEecCCCHHHHHHHH
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---------------------ADISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---------------------~~~~~~~l~g~~~~~~R~~~l 69 (185)
|..+|....+ .....++|||.+|++.+++=+..|+.. -..++.-|||+|++++|..++
T Consensus 412 Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 412 LAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 3444554444 445579999999999999877766431 126789999999999999999
Q ss_pred HHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCC
Q 029910 70 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 147 (185)
Q Consensus 70 ~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~ 147 (185)
+.|++. ...||+|||+ ++||+|+|+|.+||+||.|.++++|+||+||+ .|.
T Consensus 491 ~~Fs~~-----------------------~~~VLLcTDV----AaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~ 543 (708)
T KOG0348|consen 491 QEFSHS-----------------------RRAVLLCTDV----AARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGE 543 (708)
T ss_pred Hhhccc-----------------------cceEEEehhh----hhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccC
Confidence 999998 5679999999 99999999999999999999999999999996 788
Q ss_pred CCEEEEEeeCchHHHHHHHHHHhCC
Q 029910 148 DGSVINIVVGGEVVTLRSMEESLGL 172 (185)
Q Consensus 148 ~g~~i~~v~~~e~~~~~~l~~~~~~ 172 (185)
.|.++.|..+.|.+++..++.....
T Consensus 544 kG~alLfL~P~Eaey~~~l~~~~~~ 568 (708)
T KOG0348|consen 544 KGEALLFLLPSEAEYVNYLKKHHIM 568 (708)
T ss_pred CCceEEEecccHHHHHHHHHhhcch
Confidence 8999999999999988777776443
No 36
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=8.9e-21 Score=181.93 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=100.1
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHh-cCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
+.+.|..++. ...+.|+||||+++.++..|.+.|+ ..| +.+..+||+|+..+|.++++.|++++
T Consensus 480 Ki~~L~~~L~-~~~~~KvLVF~~~~~t~~~L~~~L~~~~G-i~~~~ihG~~s~~eR~~~~~~F~~~~------------- 544 (956)
T PRK04914 480 RVEWLIDFLK-SHRSEKVLVICAKAATALQLEQALREREG-IRAAVFHEGMSIIERDRAAAYFADEE------------- 544 (956)
T ss_pred HHHHHHHHHH-hcCCCeEEEEeCcHHHHHHHHHHHhhccC-eeEEEEECCCCHHHHHHHHHHHhcCC-------------
Confidence 4444444444 3446899999999999999999995 456 89999999999999999999999851
Q ss_pred CCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEe
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIV 155 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v 155 (185)
+..++||||++ +++|+|++.+++|||||+|||++.|.||+||+ .|+.+.+..++
T Consensus 545 --------~~~~VLIsTdv----gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 545 --------DGAQVLLCSEI----GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred --------CCccEEEechh----hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 15899999999 99999999999999999999999999999996 56667655544
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.5e-21 Score=170.24 Aligned_cols=124 Identities=19% Similarity=0.307 Sum_probs=112.7
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHh-cC--CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVS-NL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~-~~--~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
...+.++|+|+++.+++..|++.|. .. .+.++..++|.++...|.+.++.|+.|
T Consensus 426 ~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g----------------------- 482 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG----------------------- 482 (620)
T ss_pred HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-----------------------
Confidence 5667999999999999999999997 22 237888899999999999999999999
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHhCC
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGL 172 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~~~ 172 (185)
.+++|||+|+ ++||+|+.+++.|||||+|.+..+|+||+||+ +|+.|.|++++.+.+...|.++-+..+.
T Consensus 483 ~i~vLIcSD~----laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 483 DINVLICSDA----LARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CceEEEehhh----hhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 7999999999 99999999999999999999999999999996 7888999999999998888887776544
No 38
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-20 Score=167.36 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=112.2
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEE--EEe-------cCCCHHHHHHHHHHHh
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS--SLH-------SDLAETERTLILEEFR 73 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~--~l~-------g~~~~~~R~~~l~~F~ 73 (185)
|-..|++.+.++++..++ ...+.++|||++.+++|+.+...|...+ +.+. ++- .||++.++.+++++|+
T Consensus 345 v~HPKl~~l~eilke~~~-k~~~~RvIVFT~yRdTae~i~~~L~~~~-~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr 422 (542)
T COG1111 345 VEHPKLEKLREILKEQLE-KNGDSRVIVFTEYRDTAEEIVNFLKKIG-IKARVRFIGQASREGDKGMSQKEQKEIIDQFR 422 (542)
T ss_pred CCCccHHHHHHHHHHHHh-cCCCceEEEEehhHhHHHHHHHHHHhcC-CcceeEEeeccccccccccCHHHHHHHHHHHh
Confidence 445689999999998776 5666999999999999999999999887 5553 222 4699999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC-CCCEEE
Q 029910 74 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-ADGSVI 152 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~-~~g~~i 152 (185)
+| ..++||||++ .++|+|+|++|+||.||+-.|+..++||+||+|+ ++|.++
T Consensus 423 ~G-----------------------e~nVLVaTSV----gEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~ 475 (542)
T COG1111 423 KG-----------------------EYNVLVATSV----GEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVV 475 (542)
T ss_pred cC-----------------------CceEEEEccc----ccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEE
Confidence 99 6999999999 9999999999999999999999999999999965 568998
Q ss_pred EEeeCc
Q 029910 153 NIVVGG 158 (185)
Q Consensus 153 ~~v~~~ 158 (185)
.+++.+
T Consensus 476 vLvt~g 481 (542)
T COG1111 476 VLVTEG 481 (542)
T ss_pred EEEecC
Confidence 888776
No 39
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.1e-21 Score=168.55 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=115.4
Q ss_pred ecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
..++++++-++.. ++-+.=.++.|||+||-+.+-.|.-.|...| ++...|+|.||...|..++++|..|
T Consensus 249 cse~DKflllyal-lKL~LI~gKsliFVNtIdr~YrLkLfLeqFG-iksciLNseLP~NSR~Hii~QFNkG--------- 317 (569)
T KOG0346|consen 249 CSEEDKFLLLYAL-LKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG-IKSCILNSELPANSRCHIIEQFNKG--------- 317 (569)
T ss_pred eccchhHHHHHHH-HHHHHhcCceEEEEechhhhHHHHHHHHHhC-cHhhhhcccccccchhhHHHHhhCc---------
Confidence 3455665554443 3223334899999999999999999999998 9999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCC-------C------------------------CcccCcCCCCCCcEEEEcCCCCC
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDAC-------L------------------------PLLSSGESAISARVLINYELPTK 133 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~-------~------------------------~~~~~G~d~~~v~~VI~~d~P~~ 133 (185)
..+++||||.. . --++||+|+..|..|||||+|.+
T Consensus 318 --------------~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t 383 (569)
T KOG0346|consen 318 --------------LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPET 383 (569)
T ss_pred --------------ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCc
Confidence 57777777710 0 00369999999999999999999
Q ss_pred HHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHh
Q 029910 134 KETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESL 170 (185)
Q Consensus 134 ~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~ 170 (185)
+..|+||+||+ ++++|.+++||.+.+......+|...
T Consensus 384 ~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 384 VTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred hHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 99999999996 78899999999998887666666553
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.84 E-value=7.1e-21 Score=173.22 Aligned_cols=131 Identities=17% Similarity=0.352 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
.++.++..|..+++ +.+..++||||+....|+-++..|++.| +.+.++.|.|++.+|..+++++|+.
T Consensus 255 emrlklq~L~~vf~-~ipy~QAlVF~~~~sra~~~a~~L~ssG-~d~~~ISgaM~Q~~Rl~a~~~lr~f----------- 321 (980)
T KOG4284|consen 255 EMRLKLQKLTHVFK-SIPYVQALVFCDQISRAEPIATHLKSSG-LDVTFISGAMSQKDRLLAVDQLRAF----------- 321 (980)
T ss_pred HHHHHHHHHHHHHh-hCchHHHHhhhhhhhhhhHHHHHhhccC-CCeEEeccccchhHHHHHHHHhhhc-----------
Confidence 45667788888777 8899999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchH-HHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEV-VTL 163 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~-~~~ 163 (185)
..+|||+||+ .+||+|.+.|++|||.|.|.+-++|.|||||+ .|..|.+++|+..+.. ..|
T Consensus 322 ------------~~rILVsTDL----taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f 385 (980)
T KOG4284|consen 322 ------------RVRILVSTDL----TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGF 385 (980)
T ss_pred ------------eEEEEEecch----hhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhh
Confidence 7999999999 99999999999999999999999999999997 5778999999976543 555
Q ss_pred HHH
Q 029910 164 RSM 166 (185)
Q Consensus 164 ~~l 166 (185)
..+
T Consensus 386 ~~m 388 (980)
T KOG4284|consen 386 TAM 388 (980)
T ss_pred HHH
Confidence 444
No 41
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=6.8e-20 Score=170.88 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=123.4
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+..++..|......+.++||||+|+..++.|++.|...| +.+..+||+++..+|.+++++|+.|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g--------------- 495 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLG--------------- 495 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcC---------------
Confidence 334455544334567899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC-----CCCHHHHHHHHhhhcC-CCCEEEEEeeC-------
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLA-ADGSVINIVVG------- 157 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~-----P~~~~~yiqR~GR~~~-~~g~~i~~v~~------- 157 (185)
...++|||++ +++|+|+|++++||++|. |.+..+|+||+||+++ ..|.+++|++.
T Consensus 496 --------~i~vlV~t~~----L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~ 563 (652)
T PRK05298 496 --------EFDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQK 563 (652)
T ss_pred --------CceEEEEeCH----HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHH
Confidence 7999999999 999999999999999985 8899999999999754 46999999984
Q ss_pred --chHHHHHHHHHHhCCccccccCCc
Q 029910 158 --GEVVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 158 --~e~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
.+...+++++..++.+...+|-++
T Consensus 564 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 564 AIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred HHHHHHHHHHHHHHhhhccCCCChhH
Confidence 467777888888888887777554
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.83 E-value=1.1e-19 Score=174.29 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=105.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC-----CceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-----~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
+.+.+..++. .++++||||||++.|+.++..|.... ...+..+||+|++++|..++++|++|
T Consensus 273 l~~~L~~~i~---~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G---------- 339 (876)
T PRK13767 273 LYETLHELIK---EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG---------- 339 (876)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC----------
Confidence 3444444333 35799999999999999999998631 25799999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCC---CEEEEEee-CchH-
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAD---GSVINIVV-GGEV- 160 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~---g~~i~~v~-~~e~- 160 (185)
..++||||+. +++|+|+|++++||+|+.|.++.+|+||+||+|++. +.++.+.. ..+.
T Consensus 340 -------------~i~vLVaTs~----Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~ 402 (876)
T PRK13767 340 -------------ELKVVVSSTS----LELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLV 402 (876)
T ss_pred -------------CCeEEEECCh----HHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHH
Confidence 6999999999 999999999999999999999999999999986543 23333333 3332
Q ss_pred HHHHHHHHHhCCcccccc
Q 029910 161 VTLRSMEESLGLIVAEVP 178 (185)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~ 178 (185)
+...-++......++++.
T Consensus 403 e~~~~~~~~~~~~ie~~~ 420 (876)
T PRK13767 403 ECAVLLKKAREGKIDRVH 420 (876)
T ss_pred HHHHHHHHHHhCCCCCCC
Confidence 222233444555555543
No 43
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.8e-20 Score=175.83 Aligned_cols=144 Identities=19% Similarity=0.374 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
+.+++..|+..|-. .....++||||..+..|+.+.+.|.+.| +.+..|||+.++.+|..++++|+++
T Consensus 596 e~eKf~kL~eLl~e-~~e~~~tiiFv~~qe~~d~l~~~L~~ag-~~~~slHGgv~q~dR~sti~dfK~~----------- 662 (997)
T KOG0334|consen 596 ENEKFLKLLELLGE-RYEDGKTIIFVDKQEKADALLRDLQKAG-YNCDSLHGGVDQHDRSSTIEDFKNG----------- 662 (997)
T ss_pred chHHHHHHHHHHHH-HhhcCCEEEEEcCchHHHHHHHHHHhcC-cchhhhcCCCchHHHHhHHHHHhcc-----------
Confidence 55566666665433 4446899999999999999999999888 7888899999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~ 164 (185)
.+.+||+|++ ++||+|+.+..+|||||+|...++|+||+||+ +|+.|.|++|+.+.+....-
T Consensus 663 ------------~~~LLvaTsv----varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~ 726 (997)
T KOG0334|consen 663 ------------VVNLLVATSV----VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAG 726 (997)
T ss_pred ------------CceEEEehhh----hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHH
Confidence 7999999999 99999999999999999999999999999997 67889999999998888878
Q ss_pred HHHHHhCCccccccC
Q 029910 165 SMEESLGLIVAEVPI 179 (185)
Q Consensus 165 ~l~~~~~~~~~~~~~ 179 (185)
.|.+.+...-.++|-
T Consensus 727 dl~~al~~~~~~~P~ 741 (997)
T KOG0334|consen 727 DLCKALELSKQPVPK 741 (997)
T ss_pred HHHHHHHhccCCCch
Confidence 887777554445553
No 44
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.82 E-value=1.9e-19 Score=167.71 Aligned_cols=131 Identities=16% Similarity=0.219 Sum_probs=113.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+..|++.|......+.++||||+|++.++.|++.|...| +.+..+||+++..+|.+++++|+.|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G--------------- 491 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLG--------------- 491 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcC---------------
Confidence 334555544434567899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC-----CCCCHHHHHHHHhhhcC-CCCEEEEEeeCchHHHHH
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLA-ADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d-----~P~~~~~yiqR~GR~~~-~~g~~i~~v~~~e~~~~~ 164 (185)
.+++||||+. +++|+|+|++++||++| .|.+..+|+||+||+++ ..|.++++++..+..+..
T Consensus 492 --------~i~VLV~t~~----L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 492 --------EFDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQK 559 (655)
T ss_pred --------CceEEEEcCh----hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHH
Confidence 7999999999 99999999999999999 89999999999999865 458999999887665555
Q ss_pred HHHHH
Q 029910 165 SMEES 169 (185)
Q Consensus 165 ~l~~~ 169 (185)
.+++.
T Consensus 560 ai~~~ 564 (655)
T TIGR00631 560 AIEET 564 (655)
T ss_pred HHHHH
Confidence 55544
No 45
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.9e-19 Score=164.62 Aligned_cols=120 Identities=20% Similarity=0.322 Sum_probs=109.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.......||||.|++.++.++++|...| +++..+|++|+.++|..+-++|..+ +.+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g-~~a~~YHaGl~~~eR~~~q~~f~~~-----------------------~~~ 282 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNG-ISAGAYHAGLSNEERERVQQAFLND-----------------------EIK 282 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCC-CceEEecCCCCHHHHHHHHHHHhcC-----------------------CCc
Confidence 4455779999999999999999999998 8999999999999999999999999 799
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEES 169 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~~ 169 (185)
|+|||.+ +.+|+|-|+|++|||||+|.|+++|.|-+||+| |.+..|+.++.+.|....+.+.+.
T Consensus 283 iiVAT~A----FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 283 VMVATNA----FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEEecc----ccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999984 677899999999887766555443
No 46
>PRK13766 Hef nuclease; Provisional
Probab=99.80 E-value=8.4e-19 Score=165.80 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecC--------CCHHHHHHHHHHHhccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD--------LAETERTLILEEFRHTAMK 78 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~--------~~~~~R~~~l~~F~~~~~~ 78 (185)
|.+.+.++|+.+.. ..++.++||||+++++|+.|.+.|...+ +.+..+||. |++.+|.+++++|+.+
T Consensus 348 K~~~L~~il~~~~~-~~~~~kvlIF~~~~~t~~~L~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g--- 422 (773)
T PRK13766 348 KLEKLREIVKEQLG-KNPDSRIIVFTQYRDTAEKIVDLLEKEG-IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG--- 422 (773)
T ss_pred HHHHHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHhCC-CceEEEEccccccccCCCCHHHHHHHHHHHHcC---
Confidence 56667777777554 4677999999999999999999998887 789999986 9999999999999998
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC-CCCEEEEEeeC
Q 029910 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-ADGSVINIVVG 157 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~-~~g~~i~~v~~ 157 (185)
..++||+|++ +++|+|+|++++||+||+|+++..|+||+||+++ .+|.++.++..
T Consensus 423 --------------------~~~vLvaT~~----~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 423 --------------------EFNVLVSTSV----AEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred --------------------CCCEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 6999999999 9999999999999999999999999999999855 34888888876
Q ss_pred c
Q 029910 158 G 158 (185)
Q Consensus 158 ~ 158 (185)
+
T Consensus 479 ~ 479 (773)
T PRK13766 479 G 479 (773)
T ss_pred C
Confidence 4
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=5.5e-19 Score=174.86 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC--------------------------------CceEEEEecCCCHHHHHHHHHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA--------------------------------DISFSSLHSDLAETERTLILEE 71 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~--------------------------------~~~~~~l~g~~~~~~R~~~l~~ 71 (185)
.+.++||||||++.|+.++..|++.. ...+..+||+|++++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35899999999999999999997531 0125789999999999999999
Q ss_pred HhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCC-CE
Q 029910 72 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAD-GS 150 (185)
Q Consensus 72 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~-g~ 150 (185)
|++| .+++||||+. +++|+|++++++||||+.|.++.+|+||+||++++. |.
T Consensus 323 fK~G-----------------------~LrvLVATss----LELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 323 LKSG-----------------------ELRCVVATSS----LELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHhC-----------------------CceEEEeCcH----HHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCc
Confidence 9999 7999999999 999999999999999999999999999999997654 33
Q ss_pred EEEEeeCchHHH-H---HHHHHHhCCccccccCC
Q 029910 151 VINIVVGGEVVT-L---RSMEESLGLIVAEVPIN 180 (185)
Q Consensus 151 ~i~~v~~~e~~~-~---~~l~~~~~~~~~~~~~~ 180 (185)
+..++.+.+... + --++..+...++++..+
T Consensus 376 s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p 409 (1490)
T PRK09751 376 SKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPP 409 (1490)
T ss_pred cEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCC
Confidence 333333323222 2 23677777777775544
No 48
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.5e-18 Score=160.74 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
++.++...|.+.+......+.++||||+|+..++.++..|...| +++..+||+++. |...+..|+.+
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g-i~~~~Lhg~~~~--rE~~ii~~ag~---------- 520 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG-LPHQVLNAKQDA--EEAAIVARAGQ---------- 520 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEeeCCcHH--HHHHHHHHcCC----------
Confidence 33444444444432222346889999999999999999999998 899999998664 44555566655
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC---CCc-----EEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEe
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTC--LAADGSVINIV 155 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~---~v~-----~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v 155 (185)
+..|+||||+ ++||+|++ +|. +|||||+|.+...|+||+||+ .|.+|.+++|+
T Consensus 521 -------------~g~VlVATdm----AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~i 583 (656)
T PRK12898 521 -------------RGRITVATNM----AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAIL 583 (656)
T ss_pred -------------CCcEEEEccc----hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEe
Confidence 4679999999 99999999 666 999999999999999999997 46779999999
Q ss_pred eCchH
Q 029910 156 VGGEV 160 (185)
Q Consensus 156 ~~~e~ 160 (185)
+..|.
T Consensus 584 s~eD~ 588 (656)
T PRK12898 584 SLEDD 588 (656)
T ss_pred chhHH
Confidence 87553
No 49
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.8e-18 Score=163.19 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=104.7
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
+..++...+++.+......+.|+||||+|++.++.++..|...| +.+..+||++++.++..+...++.
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g-i~~~~L~~~~~~~e~~~i~~ag~~----------- 476 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG-IPHNLLNAKNAAKEAQIIAEAGQK----------- 476 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCccHHHHHHHHHcCCC-----------
Confidence 34444444555543323567999999999999999999999998 899999999999888877777655
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCC---CCCc-----EEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEe
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTC--LAADGSVINIV 155 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~---~~v~-----~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v 155 (185)
.+|+||||+ ++||+|+ |+|. +|||||+|.+...|+||+||+ .|.+|.+++|+
T Consensus 477 --------------g~VlIATdm----AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 477 --------------GAVTVATNM----AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred --------------CeEEEEccc----hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 369999999 9999999 7998 999999999999999999997 46779999999
Q ss_pred eCchH
Q 029910 156 VGGEV 160 (185)
Q Consensus 156 ~~~e~ 160 (185)
+..|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 87543
No 50
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=7.3e-19 Score=153.75 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=127.2
Q ss_pred ecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
+...+.+...|-.++.+....+++||||.|+.+++++...|...| +.+..++|.|+++.|...+.+|+.+
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g-~~~s~iysslD~~aRk~~~~~F~~~--------- 310 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG-GEGSDIYSSLDQEARKINGRDFRGR--------- 310 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC-CCccccccccChHhhhhccccccCC---------
Confidence 344444444444445546667899999999999999999999998 7999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHH
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVT 162 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~ 162 (185)
+..+||+||+ ++||+|+|-.+.|||||+|.+..-|+||+||. +|+.|.++++|.+.+..+
T Consensus 311 --------------k~~~lvvTdv----aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~y 372 (529)
T KOG0337|consen 311 --------------KTSILVVTDV----AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPY 372 (529)
T ss_pred --------------ccceEEEehh----hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchh
Confidence 7999999999 99999999999999999999999999999996 689999999999999999
Q ss_pred HHHHHHHhCCcccc
Q 029910 163 LRSMEESLGLIVAE 176 (185)
Q Consensus 163 ~~~l~~~~~~~~~~ 176 (185)
+.++..+++..+..
T Consensus 373 l~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 373 LLDLQLFLGRPLIF 386 (529)
T ss_pred hhhhhhhcCCceee
Confidence 99999999876543
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.76 E-value=3.3e-18 Score=164.35 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=109.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.+.+++||||++++++.+++.|... +++++..+||+|++.+|.+++++|++| +.+|
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-----------------------k~~I 715 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-----------------------EFQV 715 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-----------------------CCCE
Confidence 3589999999999999999999875 347999999999999999999999999 7999
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhh--cCCCCEEEEEeeC------chHHHHHHHHHHh---
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTC--LAADGSVINIVVG------GEVVTLRSMEESL--- 170 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~--~~~~g~~i~~v~~------~e~~~~~~l~~~~--- 170 (185)
||||++ +++|+|+|++++||+++.|. +...|.||+||+ ++..|.|++++.. .....++.+++..
T Consensus 716 LVaT~i----ie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g 791 (926)
T TIGR00580 716 LVCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELG 791 (926)
T ss_pred EEECCh----hhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcch
Confidence 999999 99999999999999999976 678999999997 4566999999854 3456666776653
Q ss_pred -CCccccccCC
Q 029910 171 -GLIVAEVPIN 180 (185)
Q Consensus 171 -~~~~~~~~~~ 180 (185)
|..+++.++.
T Consensus 792 ~gf~ia~~Dl~ 802 (926)
T TIGR00580 792 AGFKIALHDLE 802 (926)
T ss_pred hhHHHHHHHHH
Confidence 5555544443
No 52
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=2.2e-17 Score=121.71 Aligned_cols=102 Identities=27% Similarity=0.509 Sum_probs=93.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
++.++||||++.+.++.+++.|...+ ..+..+||+++..+|..+++.|+.+ ...+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~-----------------------~~~il 82 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPG-IKVAALHGDGSQEEREEVLKDFREG-----------------------EIVVL 82 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHHHcC-----------------------CCcEE
Confidence 57899999999999999999998876 7899999999999999999999998 68999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEE
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVIN 153 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~ 153 (185)
++|.. +++|+|+|.+++||.+++|++...|.|++||++ ++.|.++.
T Consensus 83 i~t~~----~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 83 VATDV----IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEcCh----hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 99999 999999999999999999999999999999974 44565543
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.75 E-value=1e-17 Score=156.39 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=97.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC-CceEEEEecCCCHHHHHHHHHHH-hcccccccccccccCCCCCCCCCCCCcee
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEF-RHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~-~~~~~~l~g~~~~~~R~~~l~~F-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.+.++||||+++..++.+++.|.... ++.+..+||+|++. .+.+++| ++| +.+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g-----------------------k~k 448 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK-----------------------NPS 448 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC-----------------------cee
Confidence 45789999999999999999998761 38999999999975 5677887 566 799
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcC---CCC---------CHHHHHHHHhhhcC-CCCEEEEEeeCchHHHHHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYE---LPT---------KKETYIRRMTTCLA-ADGSVINIVVGGEVVTLRSME 167 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d---~P~---------~~~~yiqR~GR~~~-~~g~~i~~v~~~e~~~~~~l~ 167 (185)
||||||+ ++||+|+|+|++||+++ .|. |.++|+||+||+|+ ++|.|+.|++..+...+.++.
T Consensus 449 ILVATdI----AERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 449 IIISTPY----LESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred EEeccCh----hhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEECHHHhHHHHHHh
Confidence 9999999 99999999999999998 665 88999999999865 569999999876654444443
No 54
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=5e-18 Score=116.46 Aligned_cols=76 Identities=26% Similarity=0.421 Sum_probs=71.4
Q ss_pred HHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCc
Q 029910 44 AVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR 123 (185)
Q Consensus 44 ~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~ 123 (185)
.|+..+ +.+..+||+++..+|.+++++|+++ ..++||+|++ +++|+|+|+++
T Consensus 2 ~L~~~~-~~~~~i~~~~~~~~r~~~~~~f~~~-----------------------~~~vli~t~~----~~~Gid~~~~~ 53 (78)
T PF00271_consen 2 FLEKKG-IKVAIIHGDMSQKERQEILKKFNSG-----------------------EIRVLIATDI----LGEGIDLPDAS 53 (78)
T ss_dssp HHHHTT-SSEEEESTTSHHHHHHHHHHHHHTT-----------------------SSSEEEESCG----GTTSSTSTTES
T ss_pred ChHHCC-CcEEEEECCCCHHHHHHHHHHhhcc-----------------------CceEEEeecc----ccccccccccc
Confidence 567777 8999999999999999999999999 5799999999 99999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcCC
Q 029910 124 VLINYELPTKKETYIRRMTTCLAA 147 (185)
Q Consensus 124 ~VI~~d~P~~~~~yiqR~GR~~~~ 147 (185)
+||+|++|+++..|.|++||+++.
T Consensus 54 ~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 54 HVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp EEEESSSESSHHHHHHHHTTSSTT
T ss_pred cccccccCCCHHHHHHHhhcCCCC
Confidence 999999999999999999998654
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.75 E-value=1e-17 Score=147.53 Aligned_cols=133 Identities=23% Similarity=0.370 Sum_probs=116.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
+....++||||.|+..|+.|-+.+...| .+++.++||+..+.+|.+.++.|+++ .
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-----------------------d 558 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-----------------------D 558 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-----------------------C
Confidence 3455899999999999999999998875 37899999999999999999999999 7
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeC--------------------
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVG-------------------- 157 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~-------------------- 157 (185)
.+.|||||+ ++||+|+..+.++||..+|.+...|+||+||.+ -+-|.+|++|..
T Consensus 559 vkflictdv----aargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt 634 (725)
T KOG0349|consen 559 VKFLICTDV----AARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNT 634 (725)
T ss_pred eEEEEEehh----hhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCC
Confidence 999999999 999999999999999999999999999999964 355777776521
Q ss_pred ------------chHHHHHHHHHHhCCccccccCCc
Q 029910 158 ------------GEVVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 158 ------------~e~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
+|.+.+..+|+.+++.++.++..+
T Consensus 635 ~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 635 NLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred ccccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 466788899999999988776544
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.75 E-value=1.8e-17 Score=155.32 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=104.4
Q ss_pred CCCCcEEEEcCCh--------hhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 029910 23 RPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (185)
Q Consensus 23 ~~~~~~IIF~~~~--------~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (185)
..+.+++|||+.. ..++.+++.|... +.+.+..+||+|+.++|.+++++|++|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g------------------ 530 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG------------------ 530 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC------------------
Confidence 4568999999853 4566777777755 227899999999999999999999999
Q ss_pred CCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhhc--CCCCEEEEEee-C---chHHHHHHH
Q 029910 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCL--AADGSVINIVV-G---GEVVTLRSM 166 (185)
Q Consensus 94 ~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~~--~~~g~~i~~v~-~---~e~~~~~~l 166 (185)
+.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+| +..|.|+.++. + .....+..+
T Consensus 531 -----~~~ILVaT~v----ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~ 601 (681)
T PRK10917 531 -----EIDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIM 601 (681)
T ss_pred -----CCCEEEECcc----eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHH
Confidence 6999999999 99999999999999999998 4677888999974 56799999995 3 244556666
Q ss_pred HHH-hCCccccccCC
Q 029910 167 EES-LGLIVAEVPIN 180 (185)
Q Consensus 167 ~~~-~~~~~~~~~~~ 180 (185)
++. .|..+++.++.
T Consensus 602 ~~~~dgf~iae~dl~ 616 (681)
T PRK10917 602 RETNDGFVIAEKDLE 616 (681)
T ss_pred HHhcchHHHHHHhHh
Confidence 552 45555555443
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.74 E-value=1.5e-17 Score=158.25 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=97.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC--CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
..++||||+++..++.+++.|... .++.+..+||+|++++|.++++.|++| ..+|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-----------------------~rkV 265 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-----------------------RRKV 265 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-----------------------CeEE
Confidence 478999999999999999999863 238999999999999999999999999 7999
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCCC------------------HHHHHHHHhhhcC-CCCEEEEEeeCchH
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPTK------------------KETYIRRMTTCLA-ADGSVINIVVGGEV 160 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~------------------~~~yiqR~GR~~~-~~g~~i~~v~~~e~ 160 (185)
|||||+ +++|+|+|+|++|||+++|+. .++|+||+||+|+ .+|.|+.+++..+.
T Consensus 266 lVATnI----AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 266 VLATNI----AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQH 338 (819)
T ss_pred EEecch----HhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHH
Confidence 999999 999999999999999999863 3569999999876 67999999987544
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.73 E-value=4.2e-17 Score=151.68 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=101.3
Q ss_pred CCCCcEEEEcCCh--------hhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 029910 23 RPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (185)
Q Consensus 23 ~~~~~~IIF~~~~--------~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (185)
..+.+++|||+.. ..++.+++.|... +++.+..+||+|+..+|.+++++|++|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g------------------ 507 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG------------------ 507 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC------------------
Confidence 3568999999875 4566777777653 347899999999999999999999999
Q ss_pred CCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhhc--CCCCEEEEEe-eCch---HHHHHHH
Q 029910 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCL--AADGSVINIV-VGGE---VVTLRSM 166 (185)
Q Consensus 94 ~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~~--~~~g~~i~~v-~~~e---~~~~~~l 166 (185)
+.+|||||++ +++|+|+|++++||+|+.|. +...|.||+||+| +..|.|+.++ .+.. ...++.+
T Consensus 508 -----~~~ILVaT~v----ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~ 578 (630)
T TIGR00643 508 -----EVDILVATTV----IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVM 578 (630)
T ss_pred -----CCCEEEECce----eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHH
Confidence 7999999999 99999999999999999997 5778888999974 5679999998 3322 2334444
Q ss_pred HHH-hCCcccccc
Q 029910 167 EES-LGLIVAEVP 178 (185)
Q Consensus 167 ~~~-~~~~~~~~~ 178 (185)
++. -|..+++.+
T Consensus 579 ~~~~dgf~iae~d 591 (630)
T TIGR00643 579 ADTLDGFVIAEED 591 (630)
T ss_pred HhhcccHHHHHHH
Confidence 432 344444443
No 59
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.73 E-value=7.3e-17 Score=149.92 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC--CCceEEEEec--------CCCHHHHHHHHHHHhcc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHS--------DLAETERTLILEEFRHT 75 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~l~g--------~~~~~~R~~~l~~F~~~ 75 (185)
.+.+++.+.+..... ..+..++||||.+|..|..|..+|... .++++..+-| +|++.++.+++++|+.|
T Consensus 395 pkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 395 PKLEKLVEILVEQFE-QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred hhHHHHHHHHHHHhh-cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 356677777766556 788899999999999999999999832 1145555554 69999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEe
Q 029910 76 AMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIV 155 (185)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v 155 (185)
.+++||||++ +++|+|+++|++||.||.-.|+...+||+||+..+.|.++.+.
T Consensus 474 -----------------------~~NvLVATSV----~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~ 526 (746)
T KOG0354|consen 474 -----------------------EINVLVATSV----AEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLT 526 (746)
T ss_pred -----------------------CccEEEEecc----hhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEE
Confidence 6999999999 9999999999999999999999999999999555668888888
Q ss_pred eCchHHHH
Q 029910 156 VGGEVVTL 163 (185)
Q Consensus 156 ~~~e~~~~ 163 (185)
++.+...+
T Consensus 527 t~~~~~~~ 534 (746)
T KOG0354|consen 527 TGSEVIEF 534 (746)
T ss_pred cchhHHHH
Confidence 76554444
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.73 E-value=7.1e-17 Score=139.62 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=82.9
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCC-ceEEEEecCCCHHHHHHH----HHHHhcccccccccccccCCCCCCCCCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLI----LEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~l~g~~~~~~R~~~----l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
..+.++||||+|+++++.+++.|...+. ..+..+||++++.+|.+. +++|+++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~---------------------- 277 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN---------------------- 277 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC----------------------
Confidence 3468999999999999999999987651 369999999999999764 8899998
Q ss_pred CceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC
Q 029910 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (185)
Q Consensus 98 ~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~ 146 (185)
..++||||++ +++|+|++ +++||+++.| +++|+||+||+++
T Consensus 278 -~~~ilvaT~~----~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR 318 (358)
T TIGR01587 278 -EKFVIVATQV----IEASLDIS-ADVMITELAP--IDSLIQRLGRLHR 318 (358)
T ss_pred -CCeEEEECcc----hhceeccC-CCEEEEcCCC--HHHHHHHhccccC
Confidence 6999999999 99999995 8999999877 7899999999744
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.72 E-value=5.5e-17 Score=152.30 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=105.0
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+.+..++...+++.+......+.|+||||+|++.++.++..|...| +++..+||++++.+|..+.+.|+.
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g-i~~~~L~a~~~~~E~~ii~~ag~~-------- 472 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG-IPHNLLNAQNAAKEAQIIAEAGQK-------- 472 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCCChHHHHHHHHHcCCC--------
Confidence 34445555555555544323567999999999999999999999998 999999999999888777665555
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC---------CCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---------SARVLINYELPTKKETYIRRMTTC--LAADGSV 151 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~---------~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~ 151 (185)
..|+||||+ ++||+|++ ++.+|++|++|....+ +||+||+ .|.+|.+
T Consensus 473 -----------------g~VlIATdm----AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 473 -----------------GAVTVATSM----AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred -----------------CeEEEEccc----cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 469999999 99999999 9999999999998877 9999997 4677999
Q ss_pred EEEeeCchH
Q 029910 152 INIVVGGEV 160 (185)
Q Consensus 152 i~~v~~~e~ 160 (185)
++|++..|.
T Consensus 531 ~~~is~eD~ 539 (762)
T TIGR03714 531 QFFVSLEDD 539 (762)
T ss_pred EEEEccchh
Confidence 999987554
No 62
>PRK02362 ski2-like helicase; Provisional
Probab=99.72 E-value=8.1e-17 Score=152.01 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=101.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCC-----------------------------------ceEEEEecCCCHHHHHHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISFSSLHSDLAETERTLI 68 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~-----------------------------------~~~~~l~g~~~~~~R~~~ 68 (185)
.+.++||||++++.|+.++..|..... ..++++|++|++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 458999999999999998888764310 247899999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----cC-----CCCCHHHHHH
Q 029910 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE-----LPTKKETYIR 139 (185)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~----~d-----~P~~~~~yiq 139 (185)
.+.|++| .+++||||+. +++|+|+|.+++||+ || .|.+..+|.|
T Consensus 322 e~~Fr~G-----------------------~i~VLvaT~t----la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 322 EDAFRDR-----------------------LIKVISSTPT----LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHcC-----------------------CCeEEEechh----hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 9999999 7999999999 999999999999998 87 6899999999
Q ss_pred HHhhhcCC----CCEEEEEeeCchHHHHHHHHHHhCCcccccc
Q 029910 140 RMTTCLAA----DGSVINIVVGGEVVTLRSMEESLGLIVAEVP 178 (185)
Q Consensus 140 R~GR~~~~----~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~ 178 (185)
|+||+|+. .|.++.++...+. .-+.+++++....+++.
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~~~~l~~~~~~i~ 416 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDE-LDELFERYIWADPEDVR 416 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchh-HHHHHHHHHhCCCCcee
Confidence 99998653 3889998876432 11223444444444443
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.71 E-value=4.5e-17 Score=159.40 Aligned_cols=140 Identities=12% Similarity=0.155 Sum_probs=108.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
+..++..+.. +.+++||||+++.++.+++.|... ++..+..+||+|++.+|.+++.+|++|
T Consensus 799 k~~il~el~r----~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-------------- 860 (1147)
T PRK10689 799 REAILREILR----GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-------------- 860 (1147)
T ss_pred HHHHHHHHhc----CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc--------------
Confidence 3445555433 478999999999999999999876 237899999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCC-CCHHHHHHHHhhhc--CCCCEEEEEeeCc------hH
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCL--AADGSVINIVVGG------EV 160 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P-~~~~~yiqR~GR~~--~~~g~~i~~v~~~------e~ 160 (185)
+.+|||||++ +++|+|+|++++||..+.. .+...|+||+||+| +..|.|+.++... ..
T Consensus 861 ---------k~~VLVaTdI----ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~ 927 (1147)
T PRK10689 861 ---------RFNVLVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 (1147)
T ss_pred ---------CCCEEEECch----hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHH
Confidence 7999999999 9999999999999944332 24567999999975 4568999887442 34
Q ss_pred HHHHHHHHHh----CCccccccCCc
Q 029910 161 VTLRSMEESL----GLIVAEVPINI 181 (185)
Q Consensus 161 ~~~~~l~~~~----~~~~~~~~~~~ 181 (185)
..++.+++.. |..++..++.+
T Consensus 928 ~rl~~~~~~~~lg~gf~~a~~dl~~ 952 (1147)
T PRK10689 928 KRLEAIASLEDLGAGFALATHDLEI 952 (1147)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHh
Confidence 5556666552 45555544443
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.70 E-value=5.3e-17 Score=154.52 Aligned_cols=109 Identities=10% Similarity=0.163 Sum_probs=97.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC--CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
..++||||+++..++.+++.|... .++.+..+||+|+.++|.++++.|++| ..+|
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-----------------------~rkV 268 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-----------------------RRKV 268 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-----------------------CeEE
Confidence 589999999999999999999862 238899999999999999999999998 7999
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCCC------------------HHHHHHHHhhhcC-CCCEEEEEeeCchH
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPTK------------------KETYIRRMTTCLA-ADGSVINIVVGGEV 160 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~------------------~~~yiqR~GR~~~-~~g~~i~~v~~~e~ 160 (185)
+||||+ +++|+|+|+|++|||+++|+. .++|+||+||+|+ .+|.|+.+++..+.
T Consensus 269 lvATnI----AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 269 VLATNI----AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred EEecch----HHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHH
Confidence 999999 999999999999999887753 3689999999865 57999999987544
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.70 E-value=2.1e-16 Score=147.83 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=111.1
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+-++.++...+++.+......+.|+||||++...++.++..|...| +++..+|++ ..+|...+..|+.+
T Consensus 383 i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g-i~~~~Lna~--q~~rEa~ii~~ag~------- 452 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG-IPHNVLNAK--NHEREAEIIAQAGR------- 452 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEEeeCC--hHHHHHHHHHhcCC-------
Confidence 34445566666666654445678999999999999999999999998 899999998 88999999999988
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCC-------CcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------ARVLINYELPTKKETYIRRMTTCL--AADGSVIN 153 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~-------v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~ 153 (185)
+..|+|||++ ++||+|++. .-+||++++|.|...|.||.||+| |.+|.+.+
T Consensus 453 ----------------~g~VtIATnm----AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 453 ----------------KGAVTIATNM----AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ----------------CceEEEEecc----ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 7999999999 999999999 559999999999999999999974 67799999
Q ss_pred EeeCchH
Q 029910 154 IVVGGEV 160 (185)
Q Consensus 154 ~v~~~e~ 160 (185)
|++..|.
T Consensus 513 ~ls~eD~ 519 (745)
T TIGR00963 513 FLSLEDN 519 (745)
T ss_pred EEeccHH
Confidence 9987654
No 66
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.69 E-value=1.9e-16 Score=151.64 Aligned_cols=140 Identities=25% Similarity=0.328 Sum_probs=122.4
Q ss_pred eeEecc-hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccc
Q 029910 2 SVSFTF-QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (185)
Q Consensus 2 ~v~~~~-~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~ 80 (185)
+|...+ .+...+++..+.. ..+....||||.++..|+.++..|.+.+ +++..+|++|++.+|..+-++|..+
T Consensus 462 eV~~k~~~~~~~~~~~~~~~-~~~~~s~IIYC~sr~~ce~vs~~L~~~~-~~a~~YHAGl~~~~R~~Vq~~w~~~----- 534 (941)
T KOG0351|consen 462 EVSPKTDKDALLDILEESKL-RHPDQSGIIYCLSRKECEQVSAVLRSLG-KSAAFYHAGLPPKERETVQKAWMSD----- 534 (941)
T ss_pred EEEeccCccchHHHHHHhhh-cCCCCCeEEEeCCcchHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHhcC-----
Confidence 344444 4555666666333 7888999999999999999999999998 8999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCc
Q 029910 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGG 158 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~ 158 (185)
+++|++||-+ +++|+|.|||+.||+|.+|.+.+.|.|-+||+| |....|+.|+...
T Consensus 535 ------------------~~~VivATVA----FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 535 ------------------KIRVIVATVA----FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred ------------------CCeEEEEEee----ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 6999999999 999999999999999999999999999999984 5678999999988
Q ss_pred hHHHHHHHHHHh
Q 029910 159 EVVTLRSMEESL 170 (185)
Q Consensus 159 e~~~~~~l~~~~ 170 (185)
+...++.+....
T Consensus 593 D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 593 DISELRRLLTSG 604 (941)
T ss_pred HHHHHHHHHHcc
Confidence 887777665543
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.68 E-value=3.5e-16 Score=148.22 Aligned_cols=112 Identities=20% Similarity=0.269 Sum_probs=86.9
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHH-----HHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT-----LILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~-----~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
..+.++||||||++.|+.+++.|...+ + ..+||+|++.+|. +++++|++... .+.+ +...
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~---------~g~~---~~~~ 334 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEK-F--ELLTGTLRGAERDDLVKKEIFNRFLPQML---------SGSR---ARPQ 334 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcC-C--eEeeCCCCHHHHhhHHHHHHHHHHhcccc---------cccc---cccc
Confidence 346899999999999999999999887 4 8999999999999 78999987210 0000 0001
Q ss_pred CceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC--C-CCEEEEEee
Q 029910 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--A-DGSVINIVV 156 (185)
Q Consensus 98 ~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~--~-~g~~i~~v~ 156 (185)
...++||||++ +++|+|++. ++||++..| .++|+||+||+++ . .+..++++.
T Consensus 335 ~g~~ILVATdV----aerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 335 QGTVYLVCTSA----GEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred ccceEEeccch----hhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 13679999999 999999986 899998877 6999999999743 3 345566663
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.2e-15 Score=143.02 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.++||||++.+.++.++..| + +..+||+++..+|.+++++|+++. ..++|
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---~---~~~I~G~ts~~ER~~il~~Fr~~~----------------------~i~vL 546 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---G---KPFIYGPTSQQERMQILQNFQHNP----------------------KVNTI 546 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---C---CceEECCCCHHHHHHHHHHHHhCC----------------------CccEE
Confidence 6789999999999999999988 2 356999999999999999999763 68999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCC-CCHHHHHHHHhhhcC--CCC-------EEEEEeeCchHHHH
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLA--ADG-------SVINIVVGGEVVTL 163 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P-~~~~~yiqR~GR~~~--~~g-------~~i~~v~~~e~~~~ 163 (185)
|+|++ +.+|+|+|++++||+++.| .|...|+||+||.++ .+| ..+++|+.++.+..
T Consensus 547 v~SkV----gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 547 FLSKV----GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred EEecc----cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 99999 9999999999999999998 499999999999643 223 34889988755443
No 69
>PRK00254 ski2-like helicase; Provisional
Probab=99.66 E-value=1.1e-15 Score=144.14 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC---------------------------------CCceEEEEecCCCHHHHHHHHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL---------------------------------ADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
.++++||||+|++.|+.++..|... . ..+.++|++|++++|..+.+
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR-GGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh-hCEEEeCCCCCHHHHHHHHH
Confidence 3589999999999998877666321 1 24899999999999999999
Q ss_pred HHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE-------cCCCC-CHHHHHHHHh
Q 029910 71 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-------YELPT-KKETYIRRMT 142 (185)
Q Consensus 71 ~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~-------~d~P~-~~~~yiqR~G 142 (185)
.|++| .+++||||+. +++|+|+|.+++||. |+.|. +..+|.||+|
T Consensus 316 ~F~~G-----------------------~i~VLvaT~t----La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~G 368 (720)
T PRK00254 316 AFREG-----------------------LIKVITATPT----LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMG 368 (720)
T ss_pred HHHCC-----------------------CCeEEEeCcH----HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhh
Confidence 99999 7999999999 999999999999993 66655 5779999999
Q ss_pred hhcCC----CCEEEEEeeCch
Q 029910 143 TCLAA----DGSVINIVVGGE 159 (185)
Q Consensus 143 R~~~~----~g~~i~~v~~~e 159 (185)
|+|+. .|.++.++...+
T Consensus 369 RAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 369 RAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred ccCCCCcCCCceEEEEecCcc
Confidence 98763 489999987655
No 70
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=9.2e-16 Score=144.54 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=107.8
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+.++.++...+.+.+......+.|+||||+|+..++.|++.|...| +++..+|+++...++..+.+.++.|
T Consensus 418 i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g-i~~~~Lna~~~~~Ea~ii~~ag~~g------- 489 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG-IPHAVLNAKNHAKEAEIIMNAGQRG------- 489 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC-CCeeEecCCcHHHHHHHHHhcCCCc-------
Confidence 34445555555666554434578999999999999999999999998 8999999999988888888777776
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC---CCc-----EEEEcCCCCCHHHHHHHHhhhc--CCCCEEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCL--AADGSVI 152 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~---~v~-----~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i 152 (185)
.|+|||++ ++||+|++ +|. +||+++.|.+...|.|+.||+| |.+|.++
T Consensus 490 ------------------~VtIATnm----AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 490 ------------------AVTIATNM----AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ------------------eEEEEecc----ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 39999999 99999994 899 9999999999999999999974 6779999
Q ss_pred EEeeCchH
Q 029910 153 NIVVGGEV 160 (185)
Q Consensus 153 ~~v~~~e~ 160 (185)
.|++..|.
T Consensus 548 ~~~sleD~ 555 (796)
T PRK12906 548 FYLSLEDD 555 (796)
T ss_pred EEEeccch
Confidence 99987643
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.66 E-value=1.3e-15 Score=138.27 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=88.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.+++|||++.++++.|++.|...+ +++..+||+++..+|.++++.|+.+ ...+|
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g-~~v~~i~G~~~~~eR~~i~~~~~~~-----------------------~~~vL 398 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVY-DKVYYVSGEVDTEDRNEMKKIAEGG-----------------------KGIII 398 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHhCC-----------------------CCeEE
Confidence 45788888889999999999999988 8999999999999999999999988 67899
Q ss_pred EEe-cCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC
Q 029910 104 VVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (185)
Q Consensus 104 V~T-d~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~ 146 (185)
||| ++ +++|+|+|++++||++++|.+...|+||+||+++
T Consensus 399 vaT~~~----l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R 438 (501)
T PHA02558 399 VASYGV----FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLR 438 (501)
T ss_pred EEEcce----eccccccccccEEEEecCCcchhhhhhhhhcccc
Confidence 998 89 9999999999999999999999999999999744
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.63 E-value=2.1e-15 Score=131.61 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC-CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~-~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.++.++||||||++.++.++..|+..+ ++.+..+||.+++.+|.+. + +.+
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~-----------------------~~~ 320 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------M-----------------------QFD 320 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------c-----------------------cCC
Confidence 456899999999999999999998764 2578899999999998653 2 478
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~ 145 (185)
+|||||+ ++||+|++.+ +|| ++ |.+.++|+||+||+|
T Consensus 321 iLVaTdv----~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 321 ILLGTST----VDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEEecH----HhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999 9999999987 566 56 999999999999974
No 73
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=2.7e-15 Score=101.85 Aligned_cols=80 Identities=30% Similarity=0.479 Sum_probs=73.5
Q ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCC
Q 029910 40 AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 119 (185)
Q Consensus 40 ~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~ 119 (185)
.+.+.|...+ +.+..+||++++.+|..+++.|+.+ ...+||+|++ +++|+|+
T Consensus 2 ~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~vli~t~~----~~~Gi~~ 53 (82)
T smart00490 2 ELAELLKELG-IKVARLHGGLSQEEREEILEKFNNG-----------------------KIKVLVATDV----AERGLDL 53 (82)
T ss_pred HHHHHHHHCC-CeEEEEECCCCHHHHHHHHHHHHcC-----------------------CCeEEEECCh----hhCCcCh
Confidence 4667777776 8999999999999999999999998 5799999999 9999999
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHhhhcCC
Q 029910 120 ISARVLINYELPTKKETYIRRMTTCLAA 147 (185)
Q Consensus 120 ~~v~~VI~~d~P~~~~~yiqR~GR~~~~ 147 (185)
|.++.||.+++|++...|.|++||+++.
T Consensus 54 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 54 PGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred hcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 9999999999999999999999997553
No 74
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.62 E-value=9.3e-15 Score=138.08 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=99.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
..+.+..+.+ ..+.++||+||+.+++.++..|+..+...+..+||+++.++|..+.++|++|
T Consensus 242 ~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G--------------- 303 (814)
T COG1201 242 LYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG--------------- 303 (814)
T ss_pred HHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC---------------
Confidence 3444444343 3369999999999999999999988657899999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc---CCCCEEEEEeeC
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL---AADGSVINIVVG 157 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~---~~~g~~i~~v~~ 157 (185)
..+++|||.- ++-|+|+.+++.||+|..|.++...+||+||++ +..+.++.+...
T Consensus 304 --------~lravV~TSS----LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 304 --------ELKAVVATSS----LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred --------CceEEEEccc----hhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 6999999999 999999999999999999999999999999974 333455555544
No 75
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=4.9e-15 Score=141.31 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=108.3
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
||.+..++...+++.+......+.|+||||+|++.++.|++.|...+ +.+..||+ .+.+|...+..|+.+
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g-I~h~vLna--kq~~REa~Iia~AG~------- 645 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR-IAHNVLNA--KQHDREAEIVAEAGQ------- 645 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeecC--CHHHhHHHHHHhcCC-------
Confidence 44455555555666543334567999999999999999999999998 99999997 588999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC---CCc-----EEEEcCCCCCHHHHHHHHhhh--cCCCCEEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTC--LAADGSVI 152 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~---~v~-----~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i 152 (185)
+..|+|||++ ++||+|++ .|. +||+++.|.+...|.||.||+ .|.+|.++
T Consensus 646 ----------------~g~VtIATNM----AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 646 ----------------KGAVTIATNM----AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred ----------------CCeEEEeccC----cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 7999999999 99999999 554 349999999999999999997 46779999
Q ss_pred EEeeCchHH
Q 029910 153 NIVVGGEVV 161 (185)
Q Consensus 153 ~~v~~~e~~ 161 (185)
+|++..|.-
T Consensus 706 ffvSleD~L 714 (1025)
T PRK12900 706 FYVSLEDEL 714 (1025)
T ss_pred EEechhHHH
Confidence 999876543
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.61 E-value=3.8e-15 Score=146.04 Aligned_cols=109 Identities=15% Similarity=0.289 Sum_probs=93.2
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
....++||||+++..++.+++.|...+ ...+..+||+|++.+|.++++. .+ ..
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g-----------------------~r 338 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS-----------------------GR 338 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC-----------------------Ce
Confidence 345789999999999999999998765 2347899999999999999875 34 58
Q ss_pred eEEEEecCCCCcccCcCCCCCCcEEEEcC---------------CC---CCHHHHHHHHhhhcC-CCCEEEEEeeCchH
Q 029910 101 HMIVVTDACLPLLSSGESAISARVLINYE---------------LP---TKKETYIRRMTTCLA-ADGSVINIVVGGEV 160 (185)
Q Consensus 101 ~iLV~Td~~~~~~~~G~d~~~v~~VI~~d---------------~P---~~~~~yiqR~GR~~~-~~g~~i~~v~~~e~ 160 (185)
+|+|||++ +++|+|+|+|++|||++ +| .|.++|.||+||+|+ .+|.|+.+++..+.
T Consensus 339 kIIVATNI----AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~ 413 (1294)
T PRK11131 339 RIVLATNV----AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDF 413 (1294)
T ss_pred eEEEeccH----HhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHH
Confidence 99999999 99999999999999985 44 456899999999866 56999999987554
No 77
>PRK01172 ski2-like helicase; Provisional
Probab=99.60 E-value=8.4e-15 Score=137.05 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=92.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC----C--------------------ceEEEEecCCCHHHHHHHHHHHhcccccc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA----D--------------------ISFSSLHSDLAETERTLILEEFRHTAMKW 79 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~----~--------------------~~~~~l~g~~~~~~R~~~l~~F~~~~~~~ 79 (185)
.++++||||++++.++.++..|.... . ..+.++||+|++++|..+.+.|++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g---- 310 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR---- 310 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC----
Confidence 46899999999999999998886431 0 1378899999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC---------CCCHHHHHHHHhhhcCC---
Q 029910 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAA--- 147 (185)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~---------P~~~~~yiqR~GR~~~~--- 147 (185)
.+++||||++ +++|+|+|+..+|| +|. |.++.+|.||+||+|+.
T Consensus 311 -------------------~i~VLvaT~~----la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 311 -------------------YIKVIVATPT----LAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred -------------------CCeEEEecch----hhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 7999999999 99999999865544 443 56889999999998654
Q ss_pred -CCEEEEEeeCchHHHHHHHHHHhCCc
Q 029910 148 -DGSVINIVVGGEVVTLRSMEESLGLI 173 (185)
Q Consensus 148 -~g~~i~~v~~~e~~~~~~l~~~~~~~ 173 (185)
.|.++.++...+ .+..+++++...
T Consensus 367 ~~g~~~i~~~~~~--~~~~~~~~l~~~ 391 (674)
T PRK01172 367 QYGIGYIYAASPA--SYDAAKKYLSGE 391 (674)
T ss_pred CcceEEEEecCcc--cHHHHHHHHcCC
Confidence 477777765433 123344555333
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.56 E-value=2.5e-14 Score=140.49 Aligned_cols=119 Identities=10% Similarity=0.183 Sum_probs=96.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+++..+.. .....+|||++++..++.+++.|...+ .+.+..+||+|+.++|.++++ .+.
T Consensus 267 i~~~I~~l~~--~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~---~~~------------ 329 (1283)
T TIGR01967 267 ILDAVDELFA--EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ---PHS------------ 329 (1283)
T ss_pred HHHHHHHHHh--hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC---CCC------------
Confidence 3445555443 244799999999999999999998653 367899999999999998854 331
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC------------------CHHHHHHHHhhhcC-CCC
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------------------KKETYIRRMTTCLA-ADG 149 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~------------------~~~~yiqR~GR~~~-~~g 149 (185)
..+|+|||++ +++|+|+|+|++||++++++ |.++|.||+||+|+ .+|
T Consensus 330 ----------~rkIVLATNI----AEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G 395 (1283)
T TIGR01967 330 ----------GRRIVLATNV----AETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPG 395 (1283)
T ss_pred ----------CceEEEeccH----HHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCc
Confidence 3789999999 99999999999999998543 66899999999865 469
Q ss_pred EEEEEeeCchH
Q 029910 150 SVINIVVGGEV 160 (185)
Q Consensus 150 ~~i~~v~~~e~ 160 (185)
.|+.+++..+.
T Consensus 396 ~cyRLyte~~~ 406 (1283)
T TIGR01967 396 ICIRLYSEEDF 406 (1283)
T ss_pred eEEEecCHHHH
Confidence 99999986544
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.54 E-value=1.4e-14 Score=142.37 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=79.7
Q ss_pred CcEEEEcCChhh---HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 26 LPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 26 ~~~IIF~~~~~~---~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.++||||++++. ++.+++.|...| +++..+||+| .+.+++|++| +.++
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~g-i~v~~~hg~l-----~~~l~~F~~G-----------------------~~~V 379 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLG-INAELAISGF-----ERKFEKFEEG-----------------------EVDV 379 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCC-CcEEEEeCcH-----HHHHHHHHCC-----------------------CCCE
Confidence 589999999888 999999999998 8999999999 2346999999 7999
Q ss_pred EEE----ecCCCCcccCcCCCCC-CcEEEEcCCCC------CHHHHHHHHhhhc
Q 029910 103 IVV----TDACLPLLSSGESAIS-ARVLINYELPT------KKETYIRRMTTCL 145 (185)
Q Consensus 103 LV~----Td~~~~~~~~G~d~~~-v~~VI~~d~P~------~~~~yiqR~GR~~ 145 (185)
||+ ||+ ++||+|+|+ +++|||||+|. ..+.|.||+||..
T Consensus 380 LVatas~tdv----~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 380 LVGVASYYGV----LVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEecCCCCc----eeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 999 689 999999999 89999999998 7789999999974
No 80
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.49 E-value=6.8e-13 Score=128.63 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
+..+..||..+ ...+.++||||......+.|...|...+ +....++|+++..+|.+++++|....
T Consensus 473 l~lLdkLL~~L---k~~g~KVLIFSQft~~LdiLed~L~~~g-~~y~rIdGsts~~eRq~~Id~Fn~~~----------- 537 (1033)
T PLN03142 473 MVLLDKLLPKL---KERDSRVLIFSQMTRLLDILEDYLMYRG-YQYCRIDGNTGGEDRDASIDAFNKPG----------- 537 (1033)
T ss_pred HHHHHHHHHHH---HhcCCeEEeehhHHHHHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHhcccc-----------
Confidence 34444555553 3357899999999999999999999888 89999999999999999999998652
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCc--hHH
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG--EVV 161 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~--e~~ 161 (185)
+...-+|++|.+ .+.|+|++.+++||+||+||||..+.|++||+ .|+. -.++.+++.+ |..
T Consensus 538 ---------s~~~VfLLSTrA----GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEk 604 (1033)
T PLN03142 538 ---------SEKFVFLLSTRA----GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEK 604 (1033)
T ss_pred ---------CCceEEEEeccc----cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHH
Confidence 113457899999 99999999999999999999999999999996 4554 3567778776 445
Q ss_pred HHHHHHHHh
Q 029910 162 TLRSMEESL 170 (185)
Q Consensus 162 ~~~~l~~~~ 170 (185)
.+....+.+
T Consensus 605 Ilera~~Kl 613 (1033)
T PLN03142 605 VIERAYKKL 613 (1033)
T ss_pred HHHHHHHHH
Confidence 555544443
No 81
>PRK09694 helicase Cas3; Provisional
Probab=99.44 E-value=7.4e-13 Score=126.90 Aligned_cols=105 Identities=16% Similarity=0.341 Sum_probs=83.6
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHH----HHHHHH-hccccccccccccc
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT----LILEEF-RHTAMKWNQKVTEQ 86 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~----~~l~~F-~~~~~~~~~~~~~~ 86 (185)
+++.+......+++++|||||++.|..+++.|+..+ ...+..+||.++..+|. ++++.| +++.
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~---------- 618 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGK---------- 618 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC----------
Confidence 444433323456899999999999999999998653 25799999999999994 577788 4441
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~ 145 (185)
.....|||+|++ +++|+|+ +++++|....| .+.|+||+||++
T Consensus 619 ----------r~~~~ILVaTQV----iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~ 660 (878)
T PRK09694 619 ----------RNQGRILVATQV----VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLH 660 (878)
T ss_pred ----------cCCCeEEEECcc----hhheeec-CCCeEEECCCC--HHHHHHHHhccC
Confidence 002579999999 9999999 68999998888 789999999973
No 82
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=1.5e-13 Score=114.63 Aligned_cols=75 Identities=23% Similarity=0.515 Sum_probs=68.2
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeC-chHHHHHHHHHHhCCccccccC
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVG-GEVVTLRSMEESLGLIVAEVPI 179 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~-~e~~~~~~l~~~~~~~~~~~~~ 179 (185)
+|+|++ +.||+|+..++.|+|||+|.+.++|+||.||+ .|.+|.+|+|++. ++...+..++......+.++|.
T Consensus 302 ~vat~l----fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpd 377 (387)
T KOG0329|consen 302 LVATDL----FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPD 377 (387)
T ss_pred hHHhhh----hccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCc
Confidence 899999 99999999999999999999999999999997 5788999999975 5778888999988888888886
Q ss_pred Cc
Q 029910 180 NI 181 (185)
Q Consensus 180 ~~ 181 (185)
.+
T Consensus 378 ei 379 (387)
T KOG0329|consen 378 EI 379 (387)
T ss_pred cc
Confidence 54
No 83
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.41 E-value=8.1e-13 Score=116.59 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=99.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 105 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~ 105 (185)
.-.||||.|++.|++++-.|+..| +.+..+|.++...+|.++-+.|-++ +..|+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~G-i~A~AYHAGLK~~ERTeVQe~WM~~-----------------------~~PvI~A 311 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAG-IPAMAYHAGLKKKERTEVQEKWMNN-----------------------EIPVIAA 311 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcC-cchHHHhcccccchhHHHHHHHhcC-----------------------CCCEEEE
Confidence 567999999999999999999998 9999999999999999999999999 7999999
Q ss_pred ecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHH
Q 029910 106 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTL 163 (185)
Q Consensus 106 Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~ 163 (185)
|.- +.+|+|-|+|+.||++|+|.|+..|.|-.||+| |.++.|=..+..+|...+
T Consensus 312 T~S----FGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 312 TVS----FGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNAL 367 (641)
T ss_pred Eec----cccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHH
Confidence 999 999999999999999999999999999999974 455777777766665544
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.40 E-value=6.7e-13 Score=133.56 Aligned_cols=84 Identities=8% Similarity=0.120 Sum_probs=76.3
Q ss_pred CCcEEEEcCChhh---HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~---~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+.+.||||++++. |+.+++.|...| +++..+||+ |.+++++|++| +.+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~G-i~a~~~h~~-----R~~~l~~F~~G-----------------------~~~ 380 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDG-FKIELVSAK-----NKKGFDLFEEG-----------------------EID 380 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCC-CeEEEecch-----HHHHHHHHHcC-----------------------CCC
Confidence 4689999999876 589999999998 899999995 88999999999 799
Q ss_pred EEEEec----CCCCcccCcCCCCC-CcEEEEcCCCC---CHHHHHHHH
Q 029910 102 MIVVTD----ACLPLLSSGESAIS-ARVLINYELPT---KKETYIRRM 141 (185)
Q Consensus 102 iLV~Td----~~~~~~~~G~d~~~-v~~VI~~d~P~---~~~~yiqR~ 141 (185)
+||+|+ + ++||+|+|+ |++|||||+|. +.+.|.|..
T Consensus 381 VLVaT~s~~gv----aaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 381 YLIGVATYYGT----LVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred EEEEecCCCCe----eEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 999994 7 899999999 99999999999 888777765
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.39 E-value=1.6e-12 Score=127.99 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=70.2
Q ss_pred CcEEEEcCCh---hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 26 LPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 26 ~~~IIF~~~~---~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.++||||+++ +.|+.|+..|...| +++..+||+++. +++++|++| +.++
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g-~~a~~lhg~~~~----~~l~~Fr~G-----------------------~~~v 378 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHG-VKAVAYHATKPK----EDYEKFAEG-----------------------EIDV 378 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCC-ceEEEEeCCCCH----HHHHHHHcC-----------------------CCCE
Confidence 6899999999 99999999999998 899999999973 789999999 7999
Q ss_pred EEEe----cCCCCcccCcCCCCC-CcEEEEcCCCC
Q 029910 103 IVVT----DACLPLLSSGESAIS-ARVLINYELPT 132 (185)
Q Consensus 103 LV~T----d~~~~~~~~G~d~~~-v~~VI~~d~P~ 132 (185)
||+| |+ ++||+|+|+ |++|||||+|.
T Consensus 379 LVata~~tdv----~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 379 LIGVASYYGT----LVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred EEEeccccCc----ccccCCCCccccEEEEECCCC
Confidence 9994 89 999999999 89999999997
No 86
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.38 E-value=5.7e-12 Score=113.65 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=105.5
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
-+|+..+......+.+++|-+=|++.|+.|.++|...| +++.++|++...-+|.+++++.|.|
T Consensus 433 dDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~g-ikv~YlHSdidTlER~eIirdLR~G---------------- 495 (663)
T COG0556 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELG-IKVRYLHSDIDTLERVEIIRDLRLG---------------- 495 (663)
T ss_pred HHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcC-ceEEeeeccchHHHHHHHHHHHhcC----------------
Confidence 45555544434456999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC-----CCCCHHHHHHHHhhhcCC-CCEEEEEeeCchH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-DGSVINIVVGGEV 160 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d-----~P~~~~~yiqR~GR~~~~-~g~~i~~v~~~e~ 160 (185)
..++||.-.. +-+|+|+|.|.+|..+| +.+|-.+.+|-|||++++ .|.+|.....-..
T Consensus 496 -------~~DvLVGINL----LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~ 559 (663)
T COG0556 496 -------EFDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITD 559 (663)
T ss_pred -------CccEEEeehh----hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhH
Confidence 6999999999 99999999999999887 567999999999998765 5999988765333
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=1.1e-11 Score=111.16 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=89.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.+++|||.++.++..++..+...+ + +..++|+.+..+|.+++++|+.| ..++|
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~-~-~~~it~~t~~~eR~~il~~fr~g-----------------------~~~~l 336 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG-I-VEAITGETPKEEREAILERFRTG-----------------------GIKVL 336 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC-c-eEEEECCCCHHHHHHHHHHHHcC-----------------------CCCEE
Confidence 56899999999999999999998887 5 89999999999999999999999 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~ 146 (185)
|++.+ +.+|+|+|+++++|......|...|+||+||..+
T Consensus 337 v~~~v----l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 337 VTVKV----LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEeee----ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999 9999999999999999999999999999999643
No 88
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.36 E-value=2.7e-12 Score=116.65 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHcc-------CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccc
Q 029910 8 QETLVELLHLVVAG-------RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (185)
Q Consensus 8 ~~~l~~ll~~l~~~-------~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~ 80 (185)
...+.+++..|.+. ..-..|+|||+++++.|..|+..|..+| +++..+|++++..+|..+-.+|..+
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG-~~a~pYHaGL~y~eRk~vE~~F~~q----- 489 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG-LKAAPYHAGLPYKERKSVERAFAAQ----- 489 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC-cccccccCCCcHHHHHHHHHHHhcC-----
Confidence 44556666665431 2234899999999999999999999998 9999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE---cCCCC-CHHHHHHHHhhhcCC----CCEEE
Q 029910 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN---YELPT-KKETYIRRMTTCLAA----DGSVI 152 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~---~d~P~-~~~~yiqR~GR~~~~----~g~~i 152 (185)
.+.++|+|-+ ++-|+|||.-.+|+- ...-| ++.+|.|++||+|+. .|+++
T Consensus 490 ------------------~l~~VVTTAA----L~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVy 547 (830)
T COG1202 490 ------------------ELAAVVTTAA----LAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVY 547 (830)
T ss_pred ------------------CcceEeehhh----hhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEE
Confidence 6999999999 999999997655431 12223 899999999998764 48999
Q ss_pred EEeeCc
Q 029910 153 NIVVGG 158 (185)
Q Consensus 153 ~~v~~~ 158 (185)
.++.++
T Consensus 548 llvepg 553 (830)
T COG1202 548 LLVEPG 553 (830)
T ss_pred EEecCC
Confidence 998664
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.30 E-value=9.8e-11 Score=101.12 Aligned_cols=127 Identities=19% Similarity=0.315 Sum_probs=101.0
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHH-hcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAV-SNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L-~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
.|+..|-+.+..+.|++||+++....+.++..| ...+....+++|+. ...|.+.+++||+|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G---------------- 354 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDG---------------- 354 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcC----------------
Confidence 344444444667899999999999999999999 55676677899976 67899999999999
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEE-EcCCC-CCHHHHHHHHhhhcCC----CCEEEEEeeCchHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI-NYELP-TKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI-~~d~P-~~~~~yiqR~GR~~~~----~g~~i~~v~~~e~~~~~~ 165 (185)
..++||+|.+ ++||+.+|+|++.| ..+-+ -+.++.+|-+||.|++ .|.++.|-.+....+.+.
T Consensus 355 -------~~~lLiTTTI----LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A 423 (441)
T COG4098 355 -------KITLLITTTI----LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQA 423 (441)
T ss_pred -------ceEEEEEeeh----hhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHH
Confidence 7999999999 99999999999855 44332 4788999999997654 388888887766666544
Q ss_pred HHH
Q 029910 166 MEE 168 (185)
Q Consensus 166 l~~ 168 (185)
..+
T Consensus 424 ~ke 426 (441)
T COG4098 424 RKE 426 (441)
T ss_pred HHH
Confidence 433
No 90
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=107.62 Aligned_cols=102 Identities=23% Similarity=0.352 Sum_probs=92.8
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
...+=+..+++++-.++..||||=++..++.++..|.+.| +.+..+|..|.+.+|...-+.|-.|
T Consensus 302 d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g-i~a~~yha~lep~dks~~hq~w~a~-------------- 366 (695)
T KOG0353|consen 302 DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG-IHAGAYHANLEPEDKSGAHQGWIAG-------------- 366 (695)
T ss_pred HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC-ccccccccccCcccccccccccccc--------------
Confidence 3333333446668889999999999999999999999999 9999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHH
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR 139 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiq 139 (185)
+++++|+|-+ +..|+|-|+|+.||+-.+|.+.+.|.|
T Consensus 367 ---------eiqvivatva----fgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 367 ---------EIQVIVATVA----FGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred ---------ceEEEEEEee----ecccCCCCCeeEEEecccchhHHHHHH
Confidence 6999999999 999999999999999999999999999
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.24 E-value=8.3e-11 Score=108.72 Aligned_cols=148 Identities=14% Similarity=0.220 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCCh--------hhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAM 77 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~--------~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~ 77 (185)
+.+.+-++++.+.+.-..+.|+.+-|+-. ..|..+++.|+.. ++.++..+||.|+..++.+++++|+++
T Consensus 455 ~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~-- 532 (677)
T COG1200 455 PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG-- 532 (677)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC--
Confidence 34455555555444344678999999743 3566777777743 457899999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHH-hhh--cCCCCEEEEE
Q 029910 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM-TTC--LAADGSVINI 154 (185)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~-GR~--~~~~g~~i~~ 154 (185)
+.+|||||.+ .+-|+|+|+++++|.+|.-+---+-+|+. ||. ++..+.|+.+
T Consensus 533 ---------------------e~~ILVaTTV----IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 533 ---------------------EIDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred ---------------------CCcEEEEeeE----EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 6999999999 99999999999999999777666667775 884 5566899998
Q ss_pred eeCch----HHHHHHHHHH-hCCccccccCCc
Q 029910 155 VVGGE----VVTLRSMEES-LGLIVAEVPINI 181 (185)
Q Consensus 155 v~~~e----~~~~~~l~~~-~~~~~~~~~~~~ 181 (185)
..+.. ...++-+.+. -|+.++|.++.+
T Consensus 588 ~~~~~~~~a~~RL~im~~t~DGF~IAE~DLkl 619 (677)
T COG1200 588 YKPPLSEVAKQRLKIMRETTDGFVIAEEDLKL 619 (677)
T ss_pred eCCCCChhHHHHHHHHHhcCCcceehhhhHhc
Confidence 86644 3556666555 667777766554
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.21 E-value=1.6e-10 Score=113.61 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=79.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC-----CC---ceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL-----AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~-----~~---~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (185)
..|+||||.++++|+.+.+.|... ++ ..+..+||+.+ ++.+++++|+++.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-------------------- 755 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-------------------- 755 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--------------------
Confidence 479999999999999998887642 11 24567899875 5678999999872
Q ss_pred CCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC
Q 029910 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (185)
Q Consensus 97 ~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~ 146 (185)
..+|+|++|+ +..|+|+|.+.+||.+++|.|...|+|++||+.+
T Consensus 756 --~p~IlVsvdm----L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 756 --LPNIVVTVDL----LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred --CCeEEEEecc----cccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 2369999999 9999999999999999999999999999999643
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=5.2e-10 Score=106.40 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=103.8
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+.+..++...+.+.+......+.|+||||+|+..++.|++.|...| +++..||+. +.+|...+..|+.+
T Consensus 408 i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g-i~~~vLnak--q~eREa~Iia~Ag~------- 477 (830)
T PRK12904 408 IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG-IPHNVLNAK--NHEREAEIIAQAGR------- 477 (830)
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CceEeccCc--hHHHHHHHHHhcCC-------
Confidence 44455555555555543323567999999999999999999999998 999999996 78999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC--------------------------------------cE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 124 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v--------------------------------------~~ 124 (185)
+.+|+|||++ ++||+|++-- =+
T Consensus 478 ----------------~g~VtIATNm----AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 478 ----------------PGAVTIATNM----AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ----------------CceEEEeccc----ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 7999999999 9999999864 16
Q ss_pred EEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCch
Q 029910 125 LINYELPTKKETYIRRMTTCL--AADGSVINIVVGGE 159 (185)
Q Consensus 125 VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e 159 (185)
||--..|.|..-=-|-.||+| |.+|.+-.|++-.|
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 888888998877778889975 45688888887654
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=4.4e-10 Score=102.52 Aligned_cols=89 Identities=15% Similarity=0.255 Sum_probs=72.1
Q ss_pred HHHHHHHHhcC-CCceEEEEecCCCHHHH--HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCccc
Q 029910 38 LDAVCSAVSNL-ADISFSSLHSDLAETER--TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 114 (185)
Q Consensus 38 ~~~l~~~L~~~-~~~~~~~l~g~~~~~~R--~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~ 114 (185)
.+.+.+.|... ++.++..+|++++..++ .+++++|++| +.+|||+|++ ++
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-----------------------~~~ILVgT~~----i~ 323 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-----------------------KADILIGTQM----IA 323 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-----------------------CCCEEEeCcc----cc
Confidence 57777887765 34789999999987766 8999999999 6999999999 99
Q ss_pred CcCCCCCCcEE--EEcCC----CC------CHHHHHHHHhhhcC--CCCEEEE
Q 029910 115 SGESAISARVL--INYEL----PT------KKETYIRRMTTCLA--ADGSVIN 153 (185)
Q Consensus 115 ~G~d~~~v~~V--I~~d~----P~------~~~~yiqR~GR~~~--~~g~~i~ 153 (185)
+|+|+|+|++| +|+|. |. ....|+|++||+++ ..|.++.
T Consensus 324 kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 324 KGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred cCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 99999999987 47775 42 24678999999754 5577663
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=5.3e-10 Score=106.73 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=105.4
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+-+..++...+++.+......+.|+||||+|++.++.|+..|...| +++..||+.+.+.+|..+.+.|+.|
T Consensus 422 v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~g-i~h~vLnak~~q~Ea~iia~Ag~~G------- 493 (896)
T PRK13104 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKEN-IKHQVLNAKFHEKEAQIIAEAGRPG------- 493 (896)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEeecCCCChHHHHHHHhCCCCC-------
Confidence 55666777777777765556788999999999999999999999998 9999999999999999999999997
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC--------------------------------------cE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 124 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v--------------------------------------~~ 124 (185)
. |+|||++ ++||+|+.-- =+
T Consensus 494 ----------------~--VtIATNm----AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~ 551 (896)
T PRK13104 494 ----------------A--VTIATNM----AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLR 551 (896)
T ss_pred ----------------c--EEEeccC----ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCE
Confidence 3 9999999 9999998732 16
Q ss_pred EEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCch
Q 029910 125 LINYELPTKKETYIRRMTTCL--AADGSVINIVVGGE 159 (185)
Q Consensus 125 VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e 159 (185)
||--..|.|..-=-|=.||+| |.+|.+-.|++-.|
T Consensus 552 VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 552 IIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred EEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 787788877665666678875 45688888887644
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.13 E-value=5.7e-10 Score=105.01 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=74.1
Q ss_pred hHHHHHHHHhcC-CCceEEEEecCCC--HHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcc
Q 029910 37 ELDAVCSAVSNL-ADISFSSLHSDLA--ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 113 (185)
Q Consensus 37 ~~~~l~~~L~~~-~~~~~~~l~g~~~--~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~ 113 (185)
.++.+.+.|... ++.++..+|+++. ..++.+++++|++| +.+|||+|++ +
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-----------------------~~~ILVgT~~----i 490 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-----------------------EADILIGTQM----L 490 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-----------------------CCCEEEEChh----h
Confidence 456777777765 3478999999986 46789999999999 6999999999 9
Q ss_pred cCcCCCCCCcEEE--EcCCCCC----------HHHHHHHHhhhc--CCCCEEEEEee
Q 029910 114 SSGESAISARVLI--NYELPTK----------KETYIRRMTTCL--AADGSVINIVV 156 (185)
Q Consensus 114 ~~G~d~~~v~~VI--~~d~P~~----------~~~yiqR~GR~~--~~~g~~i~~v~ 156 (185)
++|+|+|++++|+ ++|.+-+ ...|.|++||++ +..|.++....
T Consensus 491 akG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 491 AKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred ccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 9999999999985 5565533 367999999975 45677775543
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=9.3e-10 Score=105.01 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=107.2
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
||.++.++...+++.+......+.|+||||+|...++.++..|...+ +.+..||+++++.++..+.+.|+.|
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g-i~~~vLnak~~~~Ea~ii~~Ag~~G------- 498 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEK-IPHEVLNAKFHEREAEIVAQAGRTG------- 498 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC-CCeEeccCcccHHHHHHHHhCCCCC-------
Confidence 56677777777887766556778999999999999999999999998 9999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC-------------------------------------cEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVL 125 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v-------------------------------------~~V 125 (185)
. |+|||++ ++||+|+.-- =+|
T Consensus 499 ----------------~--VtIATnm----AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 556 (908)
T PRK13107 499 ----------------A--VTIATNM----AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHI 556 (908)
T ss_pred ----------------c--EEEecCC----cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEE
Confidence 4 9999999 9999998732 268
Q ss_pred EEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchH
Q 029910 126 INYELPTKKETYIRRMTTCL--AADGSVINIVVGGEV 160 (185)
Q Consensus 126 I~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~ 160 (185)
|--..|.|..-=-|=.||+| |.+|.+-.|++-.|.
T Consensus 557 IgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 557 LGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred EecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 88888887666666678875 456888888876543
No 98
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.97 E-value=2.6e-09 Score=101.63 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=90.1
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC------------------CC------------------ceEEEEecCCCHHHH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL------------------AD------------------ISFSSLHSDLAETER 65 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~------------------~~------------------~~~~~l~g~~~~~~R 65 (185)
-..+.+++|||++++.+...++.|+.. .. .-++++|++++.++|
T Consensus 250 ~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R 329 (766)
T COG1204 250 LAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDR 329 (766)
T ss_pred HhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHH
Confidence 345689999999999999999988830 00 126789999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEE----EcC-----CCCCHHH
Q 029910 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE-----LPTKKET 136 (185)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI----~~d-----~P~~~~~ 136 (185)
.-+-+.|+.| .++||+||+. ++.|+|.|.-.+|| -|| .+-++-+
T Consensus 330 ~~vE~~Fr~g-----------------------~ikVlv~TpT----LA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~d 382 (766)
T COG1204 330 QLVEDAFRKG-----------------------KIKVLVSTPT----LAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLD 382 (766)
T ss_pred HHHHHHHhcC-----------------------CceEEEechH----HhhhcCCcceEEEEeeeEEEcCCCCeEECchhh
Confidence 9999999999 7999999999 99999999887777 467 5678999
Q ss_pred HHHHHhhhcCCC----CEEEEEeeC
Q 029910 137 YIRRMTTCLAAD----GSVINIVVG 157 (185)
Q Consensus 137 yiqR~GR~~~~~----g~~i~~v~~ 157 (185)
|+|.+||+|+.. |.++.+.+.
T Consensus 383 v~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 383 VLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred HhhccCcCCCCCcCCCCcEEEEecC
Confidence 999999986543 666666643
No 99
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.91 E-value=3.1e-09 Score=102.13 Aligned_cols=121 Identities=22% Similarity=0.238 Sum_probs=98.0
Q ss_pred CCCcEEEEcCChhhHHHHH----HHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELDAVC----SAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~----~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (185)
++.++|+|+.+++.++.+. ..+...+ ...+...++++..++|.++...|++|
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g--------------------- 363 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG--------------------- 363 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC---------------------
Confidence 5689999999999999886 3333222 24688889999999999999999999
Q ss_pred CCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhhcCCCCEEEEEeeC----chHHHHHHHHHHhC
Q 029910 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAADGSVINIVVG----GEVVTLRSMEESLG 171 (185)
Q Consensus 97 ~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~~~~~g~~i~~v~~----~e~~~~~~l~~~~~ 171 (185)
....+++|.+ +.-|+|+.+++.||++..|. +..++.||.||++++...++.++.. -+..+...-+....
T Consensus 364 --~~~~~~st~A----lelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 364 --ELLGVIATNA----LELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred --CccEEecchh----hhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 7999999999 99999999999999999999 8999999999998777544444422 34455555555554
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.81 E-value=5.9e-08 Score=94.42 Aligned_cols=120 Identities=10% Similarity=0.107 Sum_probs=97.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
..+.|+---+|..++.+.++..|+.. +..++++.||.|++.+-.+++.+|.+| ..+
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-----------------------~~d 857 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-----------------------EYD 857 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-----------------------CCC
Confidence 34688888889999999999999876 557899999999999999999999999 799
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhhcCCC--CEEEEEeeCc------hHHHHHHHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAD--GSVINIVVGG------EVVTLRSMEES 169 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~~~~~--g~~i~~v~~~------e~~~~~~l~~~ 169 (185)
|||||.+ .+-|+|+|.++.+|.-+.-. -.+...|--||.|++. +.|+.++.+. -...++.++++
T Consensus 858 VLv~TTI----IEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~ 930 (1139)
T COG1197 858 VLVCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASF 930 (1139)
T ss_pred EEEEeee----eecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhh
Confidence 9999999 99999999999988765443 3566667679876554 7888888642 23445555543
No 101
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.76 E-value=2.5e-08 Score=91.27 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=100.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC----CC---ceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL----AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~---~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (185)
.+-++|-||..++.|+.+....++. +- -.+..+.|+-+.++|.++..+.-.|
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--------------------- 582 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--------------------- 582 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC---------------------
Confidence 5689999999999999776554432 20 1245667889999999999998888
Q ss_pred CCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCC--CEEEEEe--eCchHHHHHHHHHHhCC
Q 029910 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAD--GSVINIV--VGGEVVTLRSMEESLGL 172 (185)
Q Consensus 97 ~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~--g~~i~~v--~~~e~~~~~~l~~~~~~ 172 (185)
...-+|+|.+ ++-|+|+...+.|+...+|.+...+.|+.||+|++. +.++.++ .+-|..++..-+...+.
T Consensus 583 --~L~giIaTNA----LELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 583 --KLCGIIATNA----LELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGS 656 (1034)
T ss_pred --eeeEEEecch----hhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCC
Confidence 7999999999 999999999999999999999999999999997665 3333333 34456666666666555
Q ss_pred ccccccCCcc
Q 029910 173 IVAEVPINIS 182 (185)
Q Consensus 173 ~~~~~~~~~~ 182 (185)
.-.++-+++.
T Consensus 657 pN~EL~LD~~ 666 (1034)
T KOG4150|consen 657 PNEELHLDSQ 666 (1034)
T ss_pred CcceeEEecc
Confidence 5555544443
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.72 E-value=8.6e-08 Score=91.42 Aligned_cols=115 Identities=23% Similarity=0.343 Sum_probs=94.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC--------------------------------------CCceEEEEecCCCHHHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL--------------------------------------ADISFSSLHSDLAETER 65 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~--------------------------------------~~~~~~~l~g~~~~~~R 65 (185)
.+.++||||++++.|+.++..+... + .-++++|.+++.++|
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~-~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP-YGVAYHHAGLTSEER 537 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc-ccceecccccccchH
Confidence 3567999999999998777444220 2 347899999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC----CCCHHHHHHHH
Q 029910 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL----PTKKETYIRRM 141 (185)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~----P~~~~~yiqR~ 141 (185)
.-+-..|+.| -..++.||+. ++-|++.|..+++|-.-. +-+.-+|.|++
T Consensus 538 ~~iE~afr~g-----------------------~i~vl~aTST----laaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 538 EIIEAAFREG-----------------------NIFVLVATST----LAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred HHHHHHHHhc-----------------------CeEEEEecch----hhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 9999999999 6999999999 999999999999997643 34788999999
Q ss_pred hhhcC----CCCEEEEEeeCchHHHHHHH
Q 029910 142 TTCLA----ADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 142 GR~~~----~~g~~i~~v~~~e~~~~~~l 166 (185)
||+++ ..|.+|.++.+.|...+..+
T Consensus 591 GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 591 GRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhhhhcccccCcceEEEeeccchhHHHHH
Confidence 99754 45899999999888666544
No 103
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=1.7e-07 Score=89.56 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC--------------------------------------C
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--------------------------------------D 50 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--------------------------------------~ 50 (185)
...++++..|.. .+-.|+||||=+++.|++-+..|.+.. .
T Consensus 553 ~~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~ 630 (1248)
T KOG0947|consen 553 PTWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLL 630 (1248)
T ss_pred chHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHh
Confidence 457888888544 345899999999999999999887620 0
Q ss_pred ceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC
Q 029910 51 ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 130 (185)
Q Consensus 51 ~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~ 130 (185)
--++++||++=+--+.-+-.-|.+| -+++|+||+. ++.|++.|.-.+|+. .+
T Consensus 631 RGiaVHH~GlLPivKE~VE~LFqrG-----------------------lVKVLFATET----FAMGVNMPARtvVF~-Sl 682 (1248)
T KOG0947|consen 631 RGIAVHHGGLLPIVKEVVELLFQRG-----------------------LVKVLFATET----FAMGVNMPARTVVFS-SL 682 (1248)
T ss_pred hcchhhcccchHHHHHHHHHHHhcC-----------------------ceEEEeehhh----hhhhcCCCceeEEee-eh
Confidence 1267888998888888888889999 7999999999 999999997665553 33
Q ss_pred CC---------CHHHHHHHHhhhcCCC----CEEEEEeeCc
Q 029910 131 PT---------KKETYIRRMTTCLAAD----GSVINIVVGG 158 (185)
Q Consensus 131 P~---------~~~~yiqR~GR~~~~~----g~~i~~v~~~ 158 (185)
-+ .+-.|.|++||+|+++ |.+|.++...
T Consensus 683 ~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 683 RKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 22 5789999999987655 8888777543
No 104
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.66 E-value=3.9e-07 Score=88.78 Aligned_cols=126 Identities=14% Similarity=0.184 Sum_probs=108.9
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+..+.+++||..-+...+-|+++|..++ +..--|.|.+.-+-|++.++.|.... +....
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r~-ypfQRLDGsvrgelRq~AIDhFnap~--------------------SddFv 754 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLRG-YPFQRLDGSVRGELRQQAIDHFNAPD--------------------SDDFV 754 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHcC-CcceeccCCcchHHHHHHHHhccCCC--------------------CCceE
Confidence 4567999999999999999999999998 79999999999999999999999873 23677
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCC--EEEEEeeCc--hHHHHHHHHHHhCC
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADG--SVINIVVGG--EVVTLRSMEESLGL 172 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g--~~i~~v~~~--e~~~~~~l~~~~~~ 172 (185)
.|++|-+ .+-||++..++.||.||--|||..=+|-+.|| -|+.. .++-||+.+ |.+++++-...++.
T Consensus 755 FLLSTRA----GGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvL 827 (1373)
T KOG0384|consen 755 FLLSTRA----GGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVL 827 (1373)
T ss_pred EEEeccc----CcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhh
Confidence 9999999 99999999999999999999999999999997 45553 567788875 66777666666553
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.59 E-value=4e-07 Score=86.56 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=87.4
Q ss_pred ccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 20 AGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 20 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
.....+++++|-|||+..|..++..|+..+. ++..+|+.+....|.+.+++.+.-. . ...
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~---~----------------~~~ 494 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLF---K----------------QNE 494 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHH---h----------------ccC
Confidence 3366789999999999999999999999984 8999999999999999988765310 0 015
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC----CCCEEEEEeeC
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA----ADGSVINIVVG 157 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~----~~g~~i~~v~~ 157 (185)
..|+|+|.+ .+-|+|+. .+++|- =+..+++.+||+||+.| .+|.++.+...
T Consensus 495 ~~IvVaTQV----IEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 495 GFIVVATQV----IEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred CeEEEEeeE----EEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 789999999 99999975 666654 35668999999999733 34566665543
No 106
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.52 E-value=1e-06 Score=80.40 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=91.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..-|||.. +++..-.+...+...|+.++++++|++|++.|.+--..|...+ ...+|||
T Consensus 357 ~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~---------------------~e~dvlV 414 (700)
T KOG0953|consen 357 PGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPS---------------------NECDVLV 414 (700)
T ss_pred CCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCC---------------------CccceEE
Confidence 35566655 5677888999999888667999999999999999999999853 2699999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCC---------CCCHHHHHHHHhhhcCCCC-EEEEEeeCchHHHHHHHHHHhCCcc
Q 029910 105 VTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAADG-SVINIVVGGEVVTLRSMEESLGLIV 174 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~---------P~~~~~yiqR~GR~~~~~g-~~i~~v~~~e~~~~~~l~~~~~~~~ 174 (185)
|||+ .++|+++. ++-||.|++ |-+...-.|-+||+|+.++ ...=+++.-..+.+..+.+.+....
T Consensus 415 AsDA----IGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~ 489 (700)
T KOG0953|consen 415 ASDA----IGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPV 489 (700)
T ss_pred eecc----cccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCc
Confidence 9999 99999986 566676664 3467888898899865431 2222233334455566666666555
Q ss_pred ccc
Q 029910 175 AEV 177 (185)
Q Consensus 175 ~~~ 177 (185)
+++
T Consensus 490 epi 492 (700)
T KOG0953|consen 490 EPI 492 (700)
T ss_pred hHH
Confidence 543
No 107
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.51 E-value=2.5e-06 Score=80.88 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=88.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee-EEE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH-MIV 104 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iLV 104 (185)
.++++-.|.+.+.+.+....+-.| ..+..|||+|+..+|.++++.|....+ ... .|.
T Consensus 596 ~~~v~Isny~~tldl~e~~~~~~g-~~~~rLdG~~~~~qRq~~vd~FN~p~~---------------------~~~vfLl 653 (776)
T KOG0390|consen 596 VKSVLISNYTQTLDLFEQLCRWRG-YEVLRLDGKTSIKQRQKLVDTFNDPES---------------------PSFVFLL 653 (776)
T ss_pred eEEEEeccHHHHHHHHHHHHhhcC-ceEEEEcCCCchHHHHHHHHhccCCCC---------------------CceEEEE
Confidence 444444566666666666666666 899999999999999999999998741 224 456
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCc--hHHHHHHH
Q 029910 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG--EVVTLRSM 166 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~--e~~~~~~l 166 (185)
+|-+ .+.|+++-+++-||.||++|||+.=.|-|+|+ -|+. ..++-+++.+ |...+++-
T Consensus 654 SsKA----gg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 654 SSKA----GGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred eccc----ccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 6777 89999999999999999999999999999996 4555 4566677665 44555443
No 108
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.46 E-value=2.1e-06 Score=83.66 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=98.6
Q ss_pred ecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
..|.++|.-||..|.. .+.+++||+.--+..+-|-..|+.+| +.-.-|.|..+-++|+..+++|..+.
T Consensus 1259 cGKLQtLAiLLqQLk~---eghRvLIfTQMtkmLDVLeqFLnyHg-ylY~RLDg~t~vEqRQaLmerFNaD~-------- 1326 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKS---EGHRVLIFTQMTKMLDVLEQFLNYHG-YLYVRLDGNTSVEQRQALMERFNADR-------- 1326 (1958)
T ss_pred cchHHHHHHHHHHHHh---cCceEEehhHHHHHHHHHHHHHhhcc-eEEEEecCCccHHHHHHHHHHhcCCC--------
Confidence 3578899999998644 57999999999999999999999888 78888999999999999999999873
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCH------HHHHHHHhhhcCCCCEEEEEeeCc
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTCLAADGSVINIVVGG 158 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~------~~yiqR~GR~~~~~g~~i~~v~~~ 158 (185)
.-...+++|-- ..-|+|+.++|.||.||--||+ .+.-||||++ +.-..+-|++.+
T Consensus 1327 -------------RIfcfILSTrS----ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt--RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1327 -------------RIFCFILSTRS----GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT--RDVHIYRLISER 1387 (1958)
T ss_pred -------------ceEEEEEeccC----CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc--cceEEEEeeccc
Confidence 22445677887 8899999999999999999986 4556666655 223345566554
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.2e-06 Score=84.00 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhc--C-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSN--L-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~--~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
...+-++||.+-.+..+..++.|.. . ....+..|||.++..++.++++.--.+ +
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~-----------------------~ 313 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG-----------------------K 313 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC-----------------------c
Confidence 3468999999999999999999987 2 247899999999999999976655554 4
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCC------------------CCCHHHHHHHHhhhcCC-CCEEEEEeeCch
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAA-DGSVINIVVGGE 159 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~------------------P~~~~~yiqR~GR~~~~-~g~~i~~v~~~e 159 (185)
.+|+++|++ ++-++.+|+|++||.-.+ |-|-++-.||.||||+. +|.|+-+++..+
T Consensus 314 RKVVlATNI----AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~ 388 (845)
T COG1643 314 RKVVLATNI----AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEED 388 (845)
T ss_pred ceEEEEccc----cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHH
Confidence 669999999 999999999999995432 44778999999999874 599999998643
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.39 E-value=8.1e-06 Score=76.93 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|+..|-.||..|. ..+.+++||..-....+-|-.+..-++ +...-+.|.++.++|...++.|....
T Consensus 472 Km~vLDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~-y~ycRiDGSt~~eeR~~aI~~fn~~~---------- 537 (971)
T KOG0385|consen 472 KMLVLDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRG-YEYCRLDGSTSHEEREDAIEAFNAPP---------- 537 (971)
T ss_pred ceehHHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcC-ceeEeecCCCCcHHHHHHHHhcCCCC----------
Confidence 4455666676653 367999999988888888888888887 79999999999999999999998873
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCchH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGGEV 160 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~e~ 160 (185)
+...=.|++|-+ .+-|+++..+++||.||--|||..=+|-+-|| -|+. -.++.+++.+.+
T Consensus 538 ----------s~~FiFlLSTRA----GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 538 ----------SEKFIFLLSTRA----GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred ----------cceEEEEEeccc----cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 113447899999 99999999999999999999999999998887 3444 467788887644
No 111
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.37 E-value=9e-06 Score=77.24 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=100.9
Q ss_pred chHHHHHHH-HHHHccCCCCC--cEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 7 FQETLVELL-HLVVAGRRPGL--PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 7 ~~~~l~~ll-~~l~~~~~~~~--~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
|...+.+++ ..+.. .+. +++||++.....+-+...|...+ +....++|+++..+|...+++|..++
T Consensus 693 k~~~l~~ll~~~~~~---~~~~~kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~------- 761 (866)
T COG0553 693 KLQALDELLLDKLLE---EGHYHKVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADE------- 761 (866)
T ss_pred HHHHHHHHHHHHHHh---hcccccEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCC-------
Confidence 455566666 44332 345 99999999999999999999998 78999999999999999999999963
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCch
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGGE 159 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~e 159 (185)
...-.++++.+ .+-|+++..++.||.||..|++....|.+.|+ .|+. -.++.+++.+.
T Consensus 762 --------------~~~v~lls~ka----gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 762 --------------EEKVFLLSLKA----GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred --------------CCceEEEEecc----cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 12445667778 99999999999999999999999999999996 3444 35677777664
No 112
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.36 E-value=6.3e-06 Score=77.77 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc-CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
|++.+..||.. ...++.++++|..++...+.|-..|.. .+ ++.+-+.|..+...|..++++|..++
T Consensus 531 Km~vl~~ll~~---W~kqg~rvllFsqs~~mLdilE~fL~~~~~-ysylRmDGtT~~~~R~~lVd~Fne~~--------- 597 (923)
T KOG0387|consen 531 KMKVLAKLLKD---WKKQGDRVLLFSQSRQMLDILESFLRRAKG-YSYLRMDGTTPAALRQKLVDRFNEDE--------- 597 (923)
T ss_pred hHHHHHHHHHH---HhhCCCEEEEehhHHHHHHHHHHHHHhcCC-ceEEEecCCCccchhhHHHHhhcCCC---------
Confidence 45555666654 245668999999999999999999984 55 89999999999999999999999885
Q ss_pred cCCCCCCCCCCCCcee-EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCC-CCE-EEEEeeCchH
Q 029910 86 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA-DGS-VINIVVGGEV 160 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~-~g~-~i~~v~~~e~ 160 (185)
... .|++|-+ ..-|+++..++-||.||+-|||.+=.|-.-|+ .|+ +.+ ++-+++++.+
T Consensus 598 -------------s~~VFLLTTrv----GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 598 -------------SIFVFLLTTRV----GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred -------------ceEEEEEEecc----cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 555 5678888 99999999999999999999999999987775 444 444 4556777643
No 113
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.34 E-value=3.7e-06 Score=82.46 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=93.1
Q ss_pred HHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-------------------------------------CCceEEEEe
Q 029910 15 LHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-------------------------------------ADISFSSLH 57 (185)
Q Consensus 15 l~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~l~ 57 (185)
++++++ .....|+|||+.+|+.+...|++++.. + .-++.+|
T Consensus 537 yeKVm~-~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp-ygfaIHh 614 (1674)
T KOG0951|consen 537 YEKVLE-HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP-YGFAIHH 614 (1674)
T ss_pred HHHHHH-hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh-ccceeec
Confidence 345555 233389999999998888877777620 2 4578999
Q ss_pred cCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEE----EcCC---
Q 029910 58 SDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYEL--- 130 (185)
Q Consensus 58 g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI----~~d~--- 130 (185)
.+|+..+|...-+-|+.| .+++||+|-. ++.|+++|.=.++| -||+
T Consensus 615 AGl~R~dR~~~EdLf~~g-----------------------~iqvlvstat----lawgvnlpahtViikgtqvy~pekg 667 (1674)
T KOG0951|consen 615 AGLNRKDRELVEDLFADG-----------------------HIQVLVSTAT----LAWGVNLPAHTVIIKGTQVYDPEKG 667 (1674)
T ss_pred cCCCcchHHHHHHHHhcC-----------------------ceeEEEeehh----hhhhcCCCcceEEecCccccCcccC
Confidence 999999999999999999 7999999999 99999999877777 4665
Q ss_pred ---CCCHHHHHHHHhhhcCCC----CEEEEEeeCchHHHHH
Q 029910 131 ---PTKKETYIRRMTTCLAAD----GSVINIVVGGEVVTLR 164 (185)
Q Consensus 131 ---P~~~~~yiqR~GR~~~~~----g~~i~~v~~~e~~~~~ 164 (185)
+-++.+-.|+.||+++.. |..|..-...+...+.
T Consensus 668 ~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyl 708 (1674)
T KOG0951|consen 668 RWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYL 708 (1674)
T ss_pred ccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhH
Confidence 347999999999986543 5555554444544443
No 114
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.32 E-value=6.6e-06 Score=78.81 Aligned_cols=127 Identities=9% Similarity=0.109 Sum_probs=98.4
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+-+..++...+++.+......++|+||.|.+...++.|++.|...| +...+|+..-... =.+++. ..|.
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~e~-EA~IIa--~AG~------ 473 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN-IPHTVLNAKQNAR-EAEIIA--KAGQ------ 473 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCceeecccchhh-HHHHHH--hCCC------
Confidence 45566777777888766545678999999999999999999999998 8999999863322 222333 3342
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCc--------EEEEcCCCCCHHHHHHHHhhhc--CCCCEEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCL--AADGSVI 152 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~--------~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i 152 (185)
...|.|||.+ ++||.|+.--. +||....|.|..-=-|-.||+| |.+|.+-
T Consensus 474 ----------------~GaVTIATNM----AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 474 ----------------KGAITIATNM----AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred ----------------CCeEEEeccc----ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 5779999999 99999998554 8999999998777778889975 4568887
Q ss_pred EEeeCch
Q 029910 153 NIVVGGE 159 (185)
Q Consensus 153 ~~v~~~e 159 (185)
.|++-.|
T Consensus 534 f~lSLeD 540 (925)
T PRK12903 534 FFISLDD 540 (925)
T ss_pred EEEecch
Confidence 7776544
No 115
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.31 E-value=3.3e-06 Score=76.40 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=94.0
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 21 GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 21 ~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
...++.|++|||.-....+.+...+..++ +..+-+.|..+..+|....++|...+ ..
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~-vg~IRIDGst~s~~R~ll~qsFQ~se----------------------ev 544 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRK-VGSIRIDGSTPSHRRTLLCQSFQTSE----------------------EV 544 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcC-CCeEEecCCCCchhHHHHHHHhcccc----------------------ce
Confidence 36677999999999999999999999997 89999999999999999999999874 44
Q ss_pred eE-EEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhh---hcCCCCE-EEEEeeCc--hHHHHHHHHHHhC
Q 029910 101 HM-IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT---CLAADGS-VINIVVGG--EVVTLRSMEESLG 171 (185)
Q Consensus 101 ~i-LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR---~~~~~g~-~i~~v~~~--e~~~~~~l~~~~~ 171 (185)
+| +++-.+ ++.|+++..++.||..++|||+.-.+|-=-| .|..+++ ++.||..+ |...+..+.++++
T Consensus 545 ~VAvlsItA----~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 545 RVAVLSITA----AGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred EEEEEEEee----cccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 42 334455 7999999999999999999997555442222 2233333 45556554 5566666666543
No 116
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.24 E-value=1.9e-06 Score=81.00 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=88.8
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCC--------------------------------------c
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------I 51 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~--------------------------------------~ 51 (185)
.+..+.+.+.. .+..|+|||+=+++.|+.++..++...+ -
T Consensus 370 ~i~kiVkmi~~--~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~R 447 (1041)
T KOG0948|consen 370 DIYKIVKMIME--RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRR 447 (1041)
T ss_pred cHHHHHHHHHh--hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHh
Confidence 34556665444 5668999999999999999988865310 1
Q ss_pred eEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----
Q 029910 52 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN---- 127 (185)
Q Consensus 52 ~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~---- 127 (185)
-+..+|+++=+-=+..+-=-|..| -+++|.||+. ++.|++.|.-.+|+-
T Consensus 448 GIGIHHsGLLPIlKE~IEILFqEG-----------------------LvKvLFATET----FsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 448 GIGIHHSGLLPILKEVIEILFQEG-----------------------LVKVLFATET----FSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred ccccccccchHHHHHHHHHHHhcc-----------------------HHHHHHhhhh----hhhccCCcceeEEEeeccc
Confidence 145677777776666666678888 7999999999 999999998776662
Q ss_pred cC---CCC-CHHHHHHHHhhhcCCC----CEEEEEeeC
Q 029910 128 YE---LPT-KKETYIRRMTTCLAAD----GSVINIVVG 157 (185)
Q Consensus 128 ~d---~P~-~~~~yiqR~GR~~~~~----g~~i~~v~~ 157 (185)
|| +-| +.-.|+|+.||+|+++ |.||.+++.
T Consensus 501 fDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 501 FDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred cCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 22 222 5678999999986654 999999865
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.22 E-value=2.1e-05 Score=74.34 Aligned_cols=127 Identities=14% Similarity=0.088 Sum_probs=99.3
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+-++.++...+++.+......++|+||.|.+...++.|+..|...| ++...|+..-.. .-.+++.+=-.
T Consensus 405 iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g-I~h~vLNAk~~~-~EA~IIa~AG~-------- 474 (764)
T PRK12326 405 VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG-VPAVVLNAKNDA-EEARIIAEAGK-------- 474 (764)
T ss_pred eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC-CcceeeccCchH-hHHHHHHhcCC--------
Confidence 55667777777888766656788999999999999999999999998 999999986433 22444443222
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC---------------cEEEEcCCCCCHHHHHHHHhhhc--
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------RVLINYELPTKKETYIRRMTTCL-- 145 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v---------------~~VI~~d~P~~~~~yiqR~GR~~-- 145 (185)
...|-|||.+ ++||.|+.-- =+||--..|.|..-=-|=.||++
T Consensus 475 ----------------~gaVTIATNM----AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 475 ----------------YGAVTVSTQM----AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ----------------CCcEEEEecC----CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 4779999999 9999998733 27999999999877778889975
Q ss_pred CCCCEEEEEeeCch
Q 029910 146 AADGSVINIVVGGE 159 (185)
Q Consensus 146 ~~~g~~i~~v~~~e 159 (185)
|.+|.+-.|++-.|
T Consensus 535 GDpGss~f~lSleD 548 (764)
T PRK12326 535 GDPGSSVFFVSLED 548 (764)
T ss_pred CCCCceeEEEEcch
Confidence 55688888887544
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.22 E-value=8.2e-06 Score=79.91 Aligned_cols=109 Identities=15% Similarity=0.256 Sum_probs=89.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC--CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.+.+++|||.-+...+.+-+-|.+. +.+.-..|.|..++.+|.+++++|.++. .++
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp----------------------tID 1396 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP----------------------TID 1396 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC----------------------cee
Confidence 4689999999999999999888654 3233447889999999999999999984 688
Q ss_pred EE-EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCE--EEEEeeCc
Q 029910 102 MI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGS--VINIVVGG 158 (185)
Q Consensus 102 iL-V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~--~i~~v~~~ 158 (185)
+| ++|-+ .+-|+++.+++.||.++--|||-.=+|-|-|+ .|++.+ ++-+++.+
T Consensus 1397 vLlLTThV----GGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1397 VLLLTTHV----GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EEEEeeec----cccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 65 67888 99999999999999999999999999999997 455542 45556655
No 119
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.21 E-value=4.4e-06 Score=80.53 Aligned_cols=125 Identities=12% Similarity=0.156 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC------CCceEEEEecCCCHHHHHHHHHHHhcccccccc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~ 81 (185)
.+-+.+++..+.. ....+.+|||-+.......+.+.|... .++.+..+|+.|+..+++.++..--.|
T Consensus 397 ~~Li~~li~~I~~-~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g------ 469 (924)
T KOG0920|consen 397 YDLIEDLIEYIDE-REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG------ 469 (924)
T ss_pred HHHHHHHHHhccc-CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC------
Confidence 4556667777666 566799999999999999999999642 136789999999999999998777777
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE--------cCCCC----------CHHHHHHHHhh
Q 029910 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN--------YELPT----------KKETYIRRMTT 143 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~--------~d~P~----------~~~~yiqR~GR 143 (185)
..+|+++|.+ ++-.+.++||-+||. ||+-. +...-.||.||
T Consensus 470 -----------------~RKIIlaTNI----AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 470 -----------------TRKIILATNI----AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred -----------------cchhhhhhhh----HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 6899999999 999999999999994 55433 45667899999
Q ss_pred hcC-CCCEEEEEeeCchH
Q 029910 144 CLA-ADGSVINIVVGGEV 160 (185)
Q Consensus 144 ~~~-~~g~~i~~v~~~e~ 160 (185)
+|+ .+|.|+.+++....
T Consensus 529 AGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 529 AGRVRPGICYHLYTRSRY 546 (924)
T ss_pred ccCccCCeeEEeechhhh
Confidence 976 67999999987433
No 120
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.17 E-value=2.8e-05 Score=73.55 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|.+.|..||..+. ..+.+++||..--...+-|-..|...+ ++..-|.|...-..|+.++++|...+
T Consensus 762 K~r~L~~LLp~~k---~~G~RVLiFSQFTqmLDILE~~L~~l~-~~ylRLDGsTqV~~RQ~lId~Fn~d~---------- 827 (941)
T KOG0389|consen 762 KCRKLKELLPKIK---KKGDRVLIFSQFTQMLDILEVVLDTLG-YKYLRLDGSTQVNDRQDLIDEFNTDK---------- 827 (941)
T ss_pred hHhHHHHHHHHHh---hcCCEEEEeeHHHHHHHHHHHHHHhcC-ceEEeecCCccchHHHHHHHhhccCC----------
Confidence 5567777777753 456999999988888888888898888 89999999999999999999999885
Q ss_pred CCCCCCCCCCCCcee-EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCH------HHHHHHHhhhcCCCCEEEEEeeCch
Q 029910 87 SGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTCLAADGSVINIVVGGE 159 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~-iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~------~~yiqR~GR~~~~~g~~i~~v~~~e 159 (185)
.+. .|++|-+ .+-|+++..+++||.||+--|| ++--||+|-+ ++-.++-+++.+.
T Consensus 828 ------------difVFLLSTKA----GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt--kpVtV~rLItk~T 889 (941)
T KOG0389|consen 828 ------------DIFVFLLSTKA----GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT--KPVTVYRLITKST 889 (941)
T ss_pred ------------ceEEEEEeecc----CcceecccccceEEEeecCCCCcccchhHHHHHhhCCc--ceeEEEEEEecCc
Confidence 444 5788999 9999999999999999986554 5555555422 3356777888764
Q ss_pred H
Q 029910 160 V 160 (185)
Q Consensus 160 ~ 160 (185)
+
T Consensus 890 I 890 (941)
T KOG0389|consen 890 I 890 (941)
T ss_pred H
Confidence 4
No 121
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.17 E-value=4.5e-06 Score=77.41 Aligned_cols=112 Identities=15% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC----C---ceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA----D---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~----~---~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (185)
..+..-++||-..++..+.+++.|.+.. . ..+..+||.++.+++.++++.--.|
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g------------------- 315 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG------------------- 315 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-------------------
Confidence 3556799999999999999999997651 0 1357899999999999887766666
Q ss_pred CCCCceeEEEEecCCCCcccCcCCCCCCcEEEEc--------CC----------CCCHHHHHHHHhhhcCC-CCEEEEEe
Q 029910 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINY--------EL----------PTKKETYIRRMTTCLAA-DGSVINIV 155 (185)
Q Consensus 95 ~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~--------d~----------P~~~~~yiqR~GR~~~~-~g~~i~~v 155 (185)
..+++++|.+ ++-.+.++++.+||.- ++ |-|.+.-.||.||+|+. +|.|+-++
T Consensus 316 ----~RKvIlsTNI----AETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLY 387 (674)
T KOG0922|consen 316 ----KRKVILSTNI----AETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLY 387 (674)
T ss_pred ----cceEEEEcce----eeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEee
Confidence 6899999999 9999999999999954 32 56889999999999874 59999998
Q ss_pred eCchH
Q 029910 156 VGGEV 160 (185)
Q Consensus 156 ~~~e~ 160 (185)
+..+.
T Consensus 388 te~~~ 392 (674)
T KOG0922|consen 388 TESAY 392 (674)
T ss_pred eHHHH
Confidence 86544
No 122
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.11 E-value=3.2e-05 Score=74.96 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=89.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC----C-----------C-------ceEEEEecCCCHHHHHHHHHHHhcccccccc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL----A-----------D-------ISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~----~-----------~-------~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~ 81 (185)
.+.+++|||.++..+...++.|.+. | . .-...+|.+|...+|.-.-..|..|
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G------ 421 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG------ 421 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC------
Confidence 4699999999999888888888553 1 0 2367788999999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEE----EcCCCC------CHHHHHHHHhhhcC----C
Q 029910 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYELPT------KKETYIRRMTTCLA----A 147 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI----~~d~P~------~~~~yiqR~GR~~~----~ 147 (185)
.+++|+||.. ++-|+++|+=-++| .||.-. ..-+-+|-.||+|+ +
T Consensus 422 -----------------~i~vL~cTaT----LAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 422 -----------------HIKVLCCTAT----LAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDS 480 (1230)
T ss_pred -----------------CceEEEecce----eeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCC
Confidence 7999999999 99999999755555 345433 45678888888765 4
Q ss_pred CCEEEEEeeCchHHHHHHH
Q 029910 148 DGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 148 ~g~~i~~v~~~e~~~~~~l 166 (185)
.|.+|.+.+.+-...+.++
T Consensus 481 ~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 481 SGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred CceEEEEecccHHHHHHHH
Confidence 5888887776655555443
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.05 E-value=1.8e-05 Score=76.55 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=65.8
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
.+.+.+..+.. . ...+++||+++.+.++.++..|... .++. .+..+.. ..|.+++++|+.+
T Consensus 661 ~ia~~i~~l~~-~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~----------- 724 (850)
T TIGR01407 661 EIASYIIEITA-I-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNG----------- 724 (850)
T ss_pred HHHHHHHHHHH-h-cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhC-----------
Confidence 44555555444 2 3469999999999999999999752 1133 2333333 5789999999998
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcE--EEEcCCC
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINYELP 131 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~--VI~~d~P 131 (185)
+..+|++|+. +.+|+|+|+..+ ||...+|
T Consensus 725 ------------~~~iLlgt~s----f~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 725 ------------EKAILLGTSS----FWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred ------------CCeEEEEcce----eecccccCCCceEEEEEeCCC
Confidence 6889999999 999999999885 4544444
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.03 E-value=8e-05 Score=70.33 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=77.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCC----CceEEEEecCCCHH---------------------HHHHHHHHHhcccccc
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAET---------------------ERTLILEEFRHTAMKW 79 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~l~g~~~~~---------------------~R~~~l~~F~~~~~~~ 79 (185)
+.+++|||.++..|..+.+.|.... ...+..++++.+.. ...+++++|+...
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~--- 590 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEE--- 590 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCC---
Confidence 5899999999999999998886541 13566677665443 1235677776532
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC------CCCEEEE
Q 029910 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA------ADGSVIN 153 (185)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~------~~g~~i~ 153 (185)
..+|||++|+ +.-|+|.|.+++++..-+-.+ ..++|.+||+.+ ..|.++-
T Consensus 591 -------------------~~~ilIVvdm----llTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 591 -------------------NPKLLIVVDM----LLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred -------------------CceEEEEEcc----cccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEE
Confidence 6899999999 999999999999988775555 468999999744 1255555
Q ss_pred Eee
Q 029910 154 IVV 156 (185)
Q Consensus 154 ~v~ 156 (185)
|+.
T Consensus 647 y~g 649 (667)
T TIGR00348 647 YRG 649 (667)
T ss_pred CcC
Confidence 554
No 125
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.00 E-value=5e-05 Score=71.46 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|..+|.+||..|.+ .+.++++|..-.+..+.+-.+|..++ +.-+-|.|.....+|..++++|...+
T Consensus 1029 KL~~LDeLL~kLka---egHRvL~yfQMTkM~dl~EdYl~yr~-Y~ylRLDGSsk~~dRrd~vrDwQ~sd---------- 1094 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKA---EGHRVLMYFQMTKMIDLIEDYLVYRG-YTYLRLDGSSKASDRRDVVRDWQASD---------- 1094 (1185)
T ss_pred ceeeHHHHHHHhhc---CCceEEehhHHHHHHHHHHHHHHhhc-cceEEecCcchhhHHHHHHhhccCCc----------
Confidence 45667778877533 56899999999999999999999888 79999999999999999999999974
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCch
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGGE 159 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~e 159 (185)
..-.|++|-+ .+-|+++..++.||.||--|+|..=.|-|-|+ .|+. -.++-+++.+.
T Consensus 1095 ------------iFvFLLSTRA----GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1095 ------------IFVFLLSTRA----GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred ------------eEEEEEeccc----CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 5667899999 99999999999999999999999888988886 4544 34555666543
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.95 E-value=6.6e-05 Score=71.42 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHcc---CCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccc
Q 029910 7 FQETLVELLHLVVAG---RRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKW 79 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~---~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~ 79 (185)
..+.....+...+.. .....|+||||.+.++|+++...|.+. ++--+..++|+- ++-++.++.|...+
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke--- 479 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKE--- 479 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcC---
Confidence 345555555544442 223589999999999999999999764 223466777763 33344577776642
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh
Q 029910 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (185)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~ 144 (185)
+--+|-|+.|+ +.-|+|+|.|-.+|.+..-.|...|.|++||+
T Consensus 480 ------------------~~P~Iaitvdl----L~TGiDvpev~nlVF~r~VrSktkF~QMvGRG 522 (875)
T COG4096 480 ------------------KYPRIAITVDL----LTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRG 522 (875)
T ss_pred ------------------CCCceEEehhh----hhcCCCchheeeeeehhhhhhHHHHHHHhcCc
Confidence 24568888899 99999999999999999999999999999994
No 127
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.91 E-value=0.00011 Score=66.85 Aligned_cols=126 Identities=15% Similarity=0.090 Sum_probs=99.1
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
+|.+.|.+-|..|.+ +...-|.|||..-....+.+...|...| +.+.-|-|+|++..|...++.|++.-
T Consensus 620 TKIEAL~EEl~~l~~-rd~t~KsIVFSQFTSmLDLi~~rL~kaG-fscVkL~GsMs~~ardatik~F~nd~--------- 688 (791)
T KOG1002|consen 620 TKIEALVEELYFLRE-RDRTAKSIVFSQFTSMLDLIEWRLGKAG-FSCVKLVGSMSPAARDATIKYFKNDI--------- 688 (791)
T ss_pred hHHHHHHHHHHHHHH-cccchhhhhHHHHHHHHHHHHHHhhccC-ceEEEeccCCChHHHHHHHHHhccCC---------
Confidence 566777777776556 7777899999998888889989999998 89999999999999999999999973
Q ss_pred cCCCCCCCCCCCCceeEEEE-ecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh---c-CCCCEEEEEeeCch
Q 029910 86 QSGDESETGKDEHKSHMIVV-TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC---L-AADGSVINIVVGGE 159 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~-Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~---~-~~~g~~i~~v~~~e 159 (185)
.+++++. -.+ .+-.+++..++.|+..|+-||+.--.|-.-|. | -++-.++.|+-.+.
T Consensus 689 -------------~c~vfLvSLkA----GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 689 -------------DCRVFLVSLKA----GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred -------------CeEEEEEEecc----CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 6776655 455 66778999999999999999886555533331 1 24557788886553
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.90 E-value=0.00015 Score=70.38 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=98.1
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+.+..++...+++.+......+.|++|-|.+....+.|+..|...| +....|+..-...| .+++.+ .|.
T Consensus 546 iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~g-i~h~vLNak~~~~E-a~iia~--AG~------ 615 (970)
T PRK12899 546 FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNR-IEHTVLNAKNHAQE-AEIIAG--AGK------ 615 (970)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC-CcceecccchhhhH-HHHHHh--cCC------
Confidence 44555667777777766656778999999999999999999999998 89999988633222 233332 231
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCc--------EEEEcCCCCCHHHHHHHHhhhc--CCCCEEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCL--AADGSVI 152 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~--------~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i 152 (185)
...|.|||.+ ++||.|+.--. +||.-..|.|..--.|-.||+| |.+|.+.
T Consensus 616 ----------------~g~VTIATNm----AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~ 675 (970)
T PRK12899 616 ----------------LGAVTVATNM----AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAK 675 (970)
T ss_pred ----------------CCcEEEeecc----ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCcee
Confidence 4779999999 99999986432 7889899999988889899985 5569988
Q ss_pred EEeeCchH
Q 029910 153 NIVVGGEV 160 (185)
Q Consensus 153 ~~v~~~e~ 160 (185)
.|++-.|.
T Consensus 676 f~lSlEDd 683 (970)
T PRK12899 676 FFLSFEDR 683 (970)
T ss_pred EEEEcchH
Confidence 88876543
No 129
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.0002 Score=69.92 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=98.4
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
||-++.++...+++.+......++|+||=|.+.+..+.|++.|...| +...+|+......|- +++.+= |.
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g-I~H~VLNAK~h~~EA-eIVA~A--G~------ 675 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK-IPHNVLNAKLHQKEA-EIVAEA--GQ------ 675 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC-CcHHHhhccchhhHH-HHHHhc--CC------
Confidence 45567777777888777656788999999999999999999999998 888888876443332 333332 21
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC--------CCcEEEEcCCCCCHHHHHHHHhhhcC--CCCEEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLA--ADGSVI 152 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~--------~v~~VI~~d~P~~~~~yiqR~GR~~~--~~g~~i 152 (185)
...|-|||.+ ++||.|+. +==+||--..|.|..---|-.||+|+ .+|.+-
T Consensus 676 ----------------~GaVTIATNM----AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 676 ----------------PGTVTIATNM----AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred ----------------CCcEEEeccC----cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 4679999999 99999987 23478999999998888888899864 568888
Q ss_pred EEeeCch
Q 029910 153 NIVVGGE 159 (185)
Q Consensus 153 ~~v~~~e 159 (185)
.|++-.|
T Consensus 736 f~lSLED 742 (1112)
T PRK12901 736 FYVSLED 742 (1112)
T ss_pred EEEEccc
Confidence 8887644
No 130
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00015 Score=70.84 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=88.5
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC---------------------------Cce------------
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---------------------------DIS------------ 52 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---------------------------~~~------------ 52 (185)
.++++.+. ..+..|+|+||=+++.|+..+..+.... ++.
T Consensus 368 ~~iv~~l~--~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~R 445 (1041)
T COG4581 368 PEIVNKLD--KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLR 445 (1041)
T ss_pred hHHHhhhh--hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhh
Confidence 34455433 2456899999999999999888876310 011
Q ss_pred -EEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC-
Q 029910 53 -FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL- 130 (185)
Q Consensus 53 -~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~- 130 (185)
.+++|++|=+..|..+-..|..| -++++++|+. ++.|++.|.-.+|+ +.+
T Consensus 446 GiavHH~GlLP~~K~~vE~Lfq~G-----------------------LvkvvFaTeT----~s~GiNmPartvv~-~~l~ 497 (1041)
T COG4581 446 GIAVHHAGLLPAIKELVEELFQEG-----------------------LVKVVFATET----FAIGINMPARTVVF-TSLS 497 (1041)
T ss_pred hhhhhccccchHHHHHHHHHHhcc-----------------------ceeEEeehhh----hhhhcCCcccceee-eeeE
Confidence 34788999999999999999999 7999999999 99999999765554 332
Q ss_pred --------CCCHHHHHHHHhhhcCCC----CEEEEEeeCc
Q 029910 131 --------PTKKETYIRRMTTCLAAD----GSVINIVVGG 158 (185)
Q Consensus 131 --------P~~~~~yiqR~GR~~~~~----g~~i~~v~~~ 158 (185)
+-++..|.|..||+|+++ |.+|+...+.
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 337899999999886654 8888876553
No 131
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.72 E-value=0.00016 Score=67.69 Aligned_cols=129 Identities=12% Similarity=0.182 Sum_probs=96.3
Q ss_pred eeEecc---hHHHHHHHHHHHc--cCCCCCcEEEEcCChhhHHHHHHHHhcC----C----CceEEEEecCCCHHHHHHH
Q 029910 2 SVSFTF---QETLVELLHLVVA--GRRPGLPMIVCCSSRDELDAVCSAVSNL----A----DISFSSLHSDLAETERTLI 68 (185)
Q Consensus 2 ~v~~~~---~~~l~~ll~~l~~--~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~----~~~~~~l~g~~~~~~R~~~ 68 (185)
.++|++ .+-+-..+..++. -..+..-+|||-.-.+..+...+.|... | .+-+..+|+.+|.+.+.++
T Consensus 445 di~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI 524 (902)
T KOG0923|consen 445 DIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI 524 (902)
T ss_pred eeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh
Confidence 445553 2333334444432 2455688999998888777666655432 2 3678999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC------------------
Q 029910 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------ 130 (185)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~------------------ 130 (185)
++.--.| ..++++||++ ++-.+.++++.+||.-.+
T Consensus 525 FePtP~g-----------------------aRKVVLATNI----AETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~ 577 (902)
T KOG0923|consen 525 FEPTPPG-----------------------ARKVVLATNI----AETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVT 577 (902)
T ss_pred cCCCCCC-----------------------ceeEEEeecc----hhhceeecCeEEEecCccccccCcCCCcCceeEEEe
Confidence 8776666 5889999999 999999999999994332
Q ss_pred CCCHHHHHHHHhhhcCC-CCEEEEEeeC
Q 029910 131 PTKKETYIRRMTTCLAA-DGSVINIVVG 157 (185)
Q Consensus 131 P~~~~~yiqR~GR~~~~-~g~~i~~v~~ 157 (185)
|-|..+-.||+||+|+. +|.|.-+++.
T Consensus 578 piSKAsA~QRaGRAGRtgPGKCfRLYt~ 605 (902)
T KOG0923|consen 578 PISKASANQRAGRAGRTGPGKCFRLYTA 605 (902)
T ss_pred eechhhhhhhccccCCCCCCceEEeech
Confidence 55778899999999875 5999999875
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.72 E-value=0.0006 Score=62.30 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=84.2
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
...+.|+|||..++-.....+-.| + --+++|..++.+|.++++.|+... .++
T Consensus 540 E~RgDKiIVFsDnvfALk~YAikl---~---KpfIYG~Tsq~ERm~ILqnFq~n~----------------------~vN 591 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIKL---G---KPFIYGPTSQNERMKILQNFQTNP----------------------KVN 591 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHHc---C---CceEECCCchhHHHHHHHhcccCC----------------------ccc
Confidence 446799999988776655555544 3 246889999999999999999874 788
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhhc----CC----CCEEEEEeeCchHHHH
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCL----AA----DGSVINIVVGGEVVTL 163 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~~----~~----~g~~i~~v~~~e~~~~ 163 (185)
-+...-+ ..-.+|+|.++++|+..-.. |-..=.||.||.. ++ ....+++|+.+..+++
T Consensus 592 TIFlSKV----gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 592 TIFLSKV----GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred eEEEeec----cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 8888888 88899999999999988764 5667789999942 11 1367778887765555
No 133
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.71 E-value=0.0013 Score=59.42 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=101.1
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (185)
+|-.+.. ......++||+++--.--.|.+.|+..+ +....+|-..+..+-..+-..|.+|
T Consensus 290 iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~-~sF~~i~EYts~~~isRAR~~F~~G------------------ 349 (442)
T PF06862_consen 290 ILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKEN-ISFVQISEYTSNSDISRARSQFFHG------------------ 349 (442)
T ss_pred HHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcC-CeEEEecccCCHHHHHHHHHHHHcC------------------
Confidence 3444332 4456899999999999999999999776 8999999999999999999999999
Q ss_pred CCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCC--------CCEEEEEeeCchHHHHHH
Q 029910 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--------DGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 94 ~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~--------~g~~i~~v~~~e~~~~~~ 165 (185)
..++|+.|+-. ..-+=..+-+++.||.|.+|..+.=|..-+.--..+ ...|..+++..|.-.++.
T Consensus 350 -----~~~iLL~TER~--HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 350 -----RKPILLYTERF--HFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred -----CceEEEEEhHH--hhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 79999999861 023455677899999999999999998887543222 357888888888876665
Q ss_pred HHH
Q 029910 166 MEE 168 (185)
Q Consensus 166 l~~ 168 (185)
+-.
T Consensus 423 IVG 425 (442)
T PF06862_consen 423 IVG 425 (442)
T ss_pred HhC
Confidence 543
No 134
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.65 E-value=0.00035 Score=67.38 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHcc------CCCCCcEEEEcCChhhHHHHHHHHhc
Q 029910 6 TFQETLVELLHLVVAG------RRPGLPMIVCCSSRDELDAVCSAVSN 47 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~------~~~~~~~IIF~~~~~~~~~l~~~L~~ 47 (185)
.|-+.|.++|+.+... ..+..++||||+.+++|.+|.+.|..
T Consensus 270 PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 270 PKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3566778888776552 14557899999999999999999965
No 135
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00031 Score=68.35 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCC---hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~---~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
.++..++++. + +.-.|||++. ++-+++|++.|++.| +++..+|.. ..+.++.|..|
T Consensus 324 ~e~~~elvk~-l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~G-i~a~~~~a~-----~~~~le~F~~G--------- 382 (1187)
T COG1110 324 LEKVVELVKK-L-----GDGGLIFVPIDYGREKAEELAEYLRSHG-INAELIHAE-----KEEALEDFEEG--------- 382 (1187)
T ss_pred HHHHHHHHHH-h-----CCCeEEEEEcHHhHHHHHHHHHHHHhcC-ceEEEeecc-----chhhhhhhccC---------
Confidence 3455566665 2 2578999999 899999999999999 899999973 37789999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCC-CcEEEEcCCCC
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-ARVLINYELPT 132 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~-v~~VI~~d~P~ 132 (185)
++++||....+---+.||+|+|. ++++|.|..|+
T Consensus 383 --------------eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 383 --------------EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred --------------ceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 69999886432222799999997 56899999994
No 136
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.57 E-value=0.001 Score=52.02 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=56.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+..++||+++.+..+.+...+...+ ++. .... +..++.+.+++|+.+ ...
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q---~~~~~~~~l~~~~~~-----------------------~~~ 61 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQ---GSKSRDELLEEFKRG-----------------------EGA 61 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEES---TCCHHHHHHHHHCCS-----------------------SSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeec---CcchHHHHHHHHHhc-----------------------cCe
Confidence 3899999999999999999998764 122 2222 367888999999998 577
Q ss_pred EEEEec--CCCCcccCcCCCCC--CcEEEEcCCCC
Q 029910 102 MIVVTD--ACLPLLSSGESAIS--ARVLINYELPT 132 (185)
Q Consensus 102 iLV~Td--~~~~~~~~G~d~~~--v~~VI~~d~P~ 132 (185)
+|+++. . +++|+|+++ ++.||...+|-
T Consensus 62 il~~v~~g~----~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 62 ILLAVAGGS----FSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp EEEEETTSC----CGSSS--ECESEEEEEEES---
T ss_pred EEEEEeccc----EEEeecCCCchhheeeecCCCC
Confidence 999997 7 899999997 66788888773
No 137
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.57 E-value=0.00053 Score=66.33 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=95.9
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
||-++.++...+++.+......+.|+||-|.|.+..+.|++.|...+ +..-+|+..-. +.-.+++. ..|.
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g-i~h~VLNAk~~-~~EA~IIa--~AG~------ 496 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEG-IEHKVLNAKYH-EKEAEIIA--QAGR------ 496 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC-CcHHHhccccc-hhHHHHHH--cCCC------
Confidence 56667777777887766656788999999999999999999999998 88888887633 22233433 2332
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCC--------------------------------C-----cEE
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--------------------------------A-----RVL 125 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~--------------------------------v-----~~V 125 (185)
...|-|||.+ ++||.|+.- | =+|
T Consensus 497 ----------------~GaVTIATNM----AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhV 556 (913)
T PRK13103 497 ----------------PGALTIATNM----AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHV 556 (913)
T ss_pred ----------------CCcEEEeccC----CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEE
Confidence 5779999999 999999951 1 268
Q ss_pred EEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCch
Q 029910 126 INYELPTKKETYIRRMTTCL--AADGSVINIVVGGE 159 (185)
Q Consensus 126 I~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e 159 (185)
|--..|.|..-=-|=.||+| |.+|.+-.|++-.|
T Consensus 557 IgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 557 IASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 88888888766667678875 45688888887644
No 138
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.43 E-value=0.00026 Score=66.52 Aligned_cols=107 Identities=13% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCcEEEEcCChhhHH----HHHHHHhcC---C--CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELD----AVCSAVSNL---A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~----~l~~~L~~~---~--~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (185)
...-++||...++..+ .+.+.|... + .+.++.+++.++..-+.++++.--.+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~------------------- 622 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG------------------- 622 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-------------------
Confidence 4477999998766555 444444332 2 48899999999999999887776666
Q ss_pred CCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC------------------CCCCHHHHHHHHhhhcCC-CCEEEEEe
Q 029910 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYE------------------LPTKKETYIRRMTTCLAA-DGSVINIV 155 (185)
Q Consensus 95 ~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d------------------~P~~~~~yiqR~GR~~~~-~g~~i~~v 155 (185)
-.+++|+|.+ ++-.+.+|++.+||... .|-|-..--||.||+|+. +|.|+-++
T Consensus 623 ----vRK~IvATNI----AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlY 694 (1042)
T KOG0924|consen 623 ----VRKCIVATNI----AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLY 694 (1042)
T ss_pred ----ceeEEEeccc----hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeeh
Confidence 6889999999 99999999999999654 366778889999999774 59999988
Q ss_pred eC
Q 029910 156 VG 157 (185)
Q Consensus 156 ~~ 157 (185)
+.
T Consensus 695 Te 696 (1042)
T KOG0924|consen 695 TE 696 (1042)
T ss_pred hh
Confidence 76
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.28 E-value=0.00061 Score=66.13 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=64.7
Q ss_pred EEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC-CC
Q 029910 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-LP 131 (185)
Q Consensus 53 ~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d-~P 131 (185)
..++|++|+..+|..+.--||.| ...+|++|.. ++-|++.|--.+|+--| +-
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g-----------------------~L~VlfaT~T----LsLGiNMPCrTVvF~gDsLQ 1017 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQG-----------------------HLQVLFATET----LSLGINMPCRTVVFAGDSLQ 1017 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcC-----------------------ceEEEEEeee----hhcccCCCceeEEEeccccc
Confidence 57889999999999999999999 7999999999 99999999766666555 44
Q ss_pred CCHHHHHHHHhhhcCCC----CEEEEEeeC
Q 029910 132 TKKETYIRRMTTCLAAD----GSVINIVVG 157 (185)
Q Consensus 132 ~~~~~yiqR~GR~~~~~----g~~i~~v~~ 157 (185)
-++-.|-|.+||+|+++ |-++.+-.+
T Consensus 1018 L~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 1018 LDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred cCchhHHhhhccccccccccccceEEEeCc
Confidence 57899999999987765 666655443
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.19 E-value=0.0056 Score=60.05 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=65.1
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCce-EEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.+.+.+..+.. ....+++||+++.+..+.++..|....... ...+.-+++...|.+++++|+.+
T Consensus 739 ~la~~i~~l~~--~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~------------- 803 (928)
T PRK08074 739 EVAAYIAKIAK--ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF------------- 803 (928)
T ss_pred HHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-------------
Confidence 44444444333 234689999999999999999997543111 22232244446788999999987
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC--cEEEEcCCC
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELP 131 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v--~~VI~~d~P 131 (185)
...||++|.. +.+|+|+|+- ++||...+|
T Consensus 804 ----------~~~iLlG~~s----FwEGVD~pg~~l~~viI~kLP 834 (928)
T PRK08074 804 ----------DKAILLGTSS----FWEGIDIPGDELSCLVIVRLP 834 (928)
T ss_pred ----------CCeEEEecCc----ccCccccCCCceEEEEEecCC
Confidence 4679999999 9999999986 567765544
No 141
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0046 Score=57.98 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=64.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+...+..++. ..+ .+++||+++.+.++.+.+.+...........+|. ..+...+++|+...
T Consensus 467 ~~~~i~~~~~-~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~-------------- 527 (654)
T COG1199 467 LAAYLREILK-ASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASG-------------- 527 (654)
T ss_pred HHHHHHHHHh-hcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhc--------------
Confidence 3444444444 333 4999999999999999999987651123444444 55558899999872
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCC--cEEEEcCCC
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELP 131 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v--~~VI~~d~P 131 (185)
..-++|+|.- +++|+|+|+= +.||...+|
T Consensus 528 --------~~~~lv~~gs----f~EGVD~~g~~l~~vvI~~lP 558 (654)
T COG1199 528 --------EGLILVGGGS----FWEGVDFPGDALRLVVIVGLP 558 (654)
T ss_pred --------CCeEEEeecc----ccCcccCCCCCeeEEEEEecC
Confidence 2279999999 9999999987 456666555
No 142
>COG4889 Predicted helicase [General function prediction only]
Probab=97.16 E-value=0.00049 Score=66.38 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=76.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhc-----------C-CCceEEE--EecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSN-----------L-ADISFSS--LHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~-----------~-~~~~~~~--l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
+.+++|-||.+.++...++..+.. . .++++.+ +.|.|+-.+|.+.++--...+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~------------- 525 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFE------------- 525 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCC-------------
Confidence 346788899888887777765532 1 2244444 448899999944433211111
Q ss_pred CCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh-----cCCCCEEEEEe
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-----LAADGSVINIV 155 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~-----~~~~g~~i~~v 155 (185)
+..++||--.-. +++|+|+|..+.||.||+-.+..+.+|-+||. +...|..|.-+
T Consensus 526 -------~neckIlSNaRc----LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 526 -------PNECKILSNARC----LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred -------cchheeeccchh----hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 115777766666 99999999999999999999999999999995 23347777765
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.16 E-value=0.007 Score=58.55 Aligned_cols=89 Identities=9% Similarity=0.166 Sum_probs=68.7
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC-CHHHHHHHHHHHhcccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL-AETERTLILEEFRHTAMKWNQ 81 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~-~~~~R~~~l~~F~~~~~~~~~ 81 (185)
|+-+..++...+++.+......++|++|-|.+....+.|+..|...| ++..+|+..- ..+.=.+++.+ .|.
T Consensus 402 v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIA~--AG~----- 473 (870)
T CHL00122 402 IYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYR-LPHQLLNAKPENVRRESEIVAQ--AGR----- 473 (870)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcC-CccceeeCCCccchhHHHHHHh--cCC-----
Confidence 44556667777777766656788999999999999999999999998 9999999862 22333345554 332
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC
Q 029910 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 120 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~ 120 (185)
+..|-|||.+ ++||.|+.
T Consensus 474 -----------------~G~VTIATNM----AGRGTDI~ 491 (870)
T CHL00122 474 -----------------KGSITIATNM----AGRGTDII 491 (870)
T ss_pred -----------------CCcEEEeccc----cCCCcCee
Confidence 5779999999 99998864
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.01 E-value=0.013 Score=56.76 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=61.3
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
.+.+.+..+. ..+++++|++++.+..+.++..|.... ..+ ..-|.-. .|.+++++|+++
T Consensus 635 ~~~~~i~~~~---~~~g~~LVLFtS~~~l~~v~~~l~~~~-~~~-l~Qg~~~--~~~~l~~~F~~~-------------- 693 (820)
T PRK07246 635 EIAKRLEELK---QLQQPILVLFNSKKHLLAVSDLLDQWQ-VSH-LAQEKNG--TAYNIKKRFDRG-------------- 693 (820)
T ss_pred HHHHHHHHHH---hcCCCEEEEECcHHHHHHHHHHHhhcC-CcE-EEeCCCc--cHHHHHHHHHcC--------------
Confidence 3444444433 245799999999999999999997654 444 4444322 256689999987
Q ss_pred CCCCCCCCCceeEEEEecCCCCcccCcCCCCC--CcEEEEcCCC
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELP 131 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~--v~~VI~~d~P 131 (185)
...||++|+. +.+|+|+|+ ...||..-+|
T Consensus 694 ---------~~~vLlG~~s----FwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 694 ---------EQQILLGLGS----FWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred ---------CCeEEEecch----hhCCCCCCCCCeEEEEEecCC
Confidence 5779999999 999999974 4445544443
No 145
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.92 E-value=0.03 Score=53.11 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|....++.++.++ .....++||-..-.....-+...|...| .....+||.....+|+.+++.|....
T Consensus 730 Ki~~~l~~le~i~--~~skeK~viVSQwtsvLniv~~hi~~~g-~~y~si~Gqv~vK~Rq~iv~~FN~~k---------- 796 (901)
T KOG4439|consen 730 KIAMVLEILETIL--TSSKEKVVIVSQWTSVLNIVRKHIQKGG-HIYTSITGQVLVKDRQEIVDEFNQEK---------- 796 (901)
T ss_pred HHHHHHHHHHHHh--hcccceeeehhHHHHHHHHHHHHHhhCC-eeeeeecCccchhHHHHHHHHHHhcc----------
Confidence 5566677777752 3444677777666666677788888888 79999999999999999999998752
Q ss_pred CCCCCCCCCCCCceeEE-EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC-CEEE-EEeeCc
Q 029910 87 SGDESETGKDEHKSHMI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD-GSVI-NIVVGG 158 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iL-V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~-g~~i-~~v~~~ 158 (185)
+..+++ +.=.+ .+-|+++...+++|..|+.||+.-=-|-+-|. .|+. -+.| -|+..+
T Consensus 797 -----------~~~rVmLlSLtA----GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 797 -----------GGARVMLLSLTA----GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred -----------CCceEEEEEEcc----CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 124444 44455 78899999999999999999998777777773 4444 3433 355554
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.011 Score=56.42 Aligned_cols=98 Identities=10% Similarity=0.181 Sum_probs=65.0
Q ss_pred cEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHH--HHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 27 PMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETE--RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 27 ~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~--R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
..|+++- ..++++.+.|... ++.+++.+.++..... =...+.+|..| +.+||
T Consensus 484 ~~L~~~G--~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-----------------------e~dIL 538 (730)
T COG1198 484 EHLRAVG--PGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-----------------------EADIL 538 (730)
T ss_pred CeeEEec--ccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-----------------------CCCee
Confidence 3455552 2344555555443 3467888888865544 45689999999 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEE--cCC----C--CCH----HHHHHHHhhhcC--CCCEEEE
Q 029910 104 VVTDACLPLLSSGESAISARVLIN--YEL----P--TKK----ETYIRRMTTCLA--ADGSVIN 153 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~--~d~----P--~~~----~~yiqR~GR~~~--~~g~~i~ 153 (185)
|.|.+ ++.|.|+|++.+|.- .|. | +.. .-+.|=+||+++ .+|.++.
T Consensus 539 iGTQm----iaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 539 IGTQM----IAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred ecchh----hhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 99999 999999999998654 332 2 233 445555688755 4454443
No 147
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.76 E-value=0.015 Score=56.85 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
.+-+..+|-+| ...+.+++.||.-..-.+-+-.+|.-.+ ++-.-+.|....++|-..++.|..+.+
T Consensus 712 fELLDRiLPKL---katgHRVLlF~qMTrlmdimEdyL~~~~-~kYlRLDG~TK~~eRg~ll~~FN~Pds---------- 777 (1157)
T KOG0386|consen 712 FELLDRILPKL---KATGHRVLLFSQMTRLMDILEDYLQIRE-YKYLRLDGQTKVEERGDLLEIFNAPDS---------- 777 (1157)
T ss_pred HHHHHhhhHHH---HhcCcchhhHHHHHHHHHHHHHHHhhhh-hheeeecCCcchhhHHHHHHHhcCCCC----------
Confidence 33444444443 3467999999988888888888887777 789999999999999999999998731
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~ 144 (185)
.-...|..|.+ ...|++++-++.||.||.-|++-...|+--|+
T Consensus 778 ----------~yf~Fllstra----gglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 778 ----------PYFIFLLSTRA----GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred ----------ceeeeeeeecc----cccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 23557889999 99999999999999999999999888888775
No 148
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.59 E-value=0.011 Score=56.01 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
..+.+++|-++|+.-|.+.++.+... + +++..+||+++..+|.+.++...+|
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g----------------------- 363 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASG----------------------- 363 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCC-----------------------
Confidence 34679999999999999888777643 5 8999999999999999999999998
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcC
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
..+|+|+|.. ++...+.+.++.+||.=+
T Consensus 364 ~~~IvVgT~~---ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 364 EADIVIGTHA---LIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred CCCEEEchHH---HhcccchhcccceEEEec
Confidence 6999999986 256677888999888533
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.55 E-value=0.0095 Score=57.85 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=70.0
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecC-CCHHHHHHHHHHHhcccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWNQ 81 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~-~~~~~R~~~l~~F~~~~~~~~~ 81 (185)
|+-++.++...+++.+......+.|++|-|.+.+..+.|++.|...| +...+|+.. ...+.=.+++.+ .|.
T Consensus 417 vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIa~--AG~----- 488 (939)
T PRK12902 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQG-IPHNLLNAKPENVEREAEIVAQ--AGR----- 488 (939)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcC-CchheeeCCCcchHhHHHHHHh--cCC-----
Confidence 45556677777777766656688999999999999999999999998 899999986 333344445554 332
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCC
Q 029910 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS 121 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~ 121 (185)
...|-|||.+ ++||.|+.-
T Consensus 489 -----------------~GaVTIATNM----AGRGTDIkL 507 (939)
T PRK12902 489 -----------------KGAVTIATNM----AGRGTDIIL 507 (939)
T ss_pred -----------------CCcEEEeccC----CCCCcCEee
Confidence 5779999999 999998753
No 150
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.32 E-value=0.02 Score=56.07 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=90.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC---C------------------CceEEEEecCCCHHHHHHHH
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---A------------------DISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~------------------~~~~~~l~g~~~~~~R~~~l 69 (185)
|+++|.. -..-+.+++||..+-.+.+.+-..|+.. | +..-.-|.|.....+|.+..
T Consensus 1131 LleIL~m---ceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1131 LLEILRM---CEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred HHHHHHH---HHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 4455543 1345689999999998888888777531 1 14556778889999999999
Q ss_pred HHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCC
Q 029910 70 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 147 (185)
Q Consensus 70 ~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~ 147 (185)
++|...+-+ .-.-.||+|-+ .+-|+++-.++-||.||..|||..=+|-+=|. .|+
T Consensus 1208 ~~FNdp~Nl-------------------RaRl~LISTRA----GsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQ 1264 (1567)
T KOG1015|consen 1208 EEFNDPTNL-------------------RARLFLISTRA----GSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQ 1264 (1567)
T ss_pred HHhcCcccc-------------------eeEEEEEeecc----CccccceeecceEEEEecccCCccchHHHHHHHhhcC
Confidence 999987411 01337899999 99999999999999999999999999988774 444
Q ss_pred C--CEEEEEeeC
Q 029910 148 D--GSVINIVVG 157 (185)
Q Consensus 148 ~--g~~i~~v~~ 157 (185)
. -+++-|+..
T Consensus 1265 tKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1265 TKPVYIYRFIAQ 1276 (1567)
T ss_pred cCceeehhhhhc
Confidence 3 445555544
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.25 E-value=0.04 Score=52.57 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+.+.+..+.. ....++||+++.+..+.++..|..... .-+..+|. ..|.+++++|++.-
T Consensus 521 ~~~~~~i~~l~~---~~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~---~~~~~ll~~f~~~~------------ 581 (697)
T PRK11747 521 AEMAEFLPELLE---KHKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGD---QPRQRLLEKHKKRV------------ 581 (697)
T ss_pred HHHHHHHHHHHh---cCCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCC---chHHHHHHHHHHHh------------
Confidence 344555555444 334589999999999999999875421 33555664 35778888887520
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCC--CcEEEEcCCC
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELP 131 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~--v~~VI~~d~P 131 (185)
..+...||++|.. +.+|+|+|+ .++||..-+|
T Consensus 582 -------~~~~~~VL~g~~s----f~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 582 -------DEGEGSVLFGLQS----FAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred -------ccCCCeEEEEecc----ccccccCCCCceEEEEEEcCC
Confidence 0003569999999 999999997 5678766655
No 152
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.0027 Score=60.83 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=61.3
Q ss_pred ceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEc--
Q 029910 51 ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY-- 128 (185)
Q Consensus 51 ~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~-- 128 (185)
..++.|++=++.+++.++++.--.| ..-++|+|.+ ++-.+.+|++.+||..
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g-----------------------~RLcVVaTNV----AETSLTIPgIkYVVD~Gr 657 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKG-----------------------ERLCVVATNV----AETSLTIPGIKYVVDCGR 657 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCC-----------------------ceEEEEeccc----hhcccccCCeeEEEeccc
Confidence 3466667777888887777766666 4668999999 9999999999999954
Q ss_pred ------CCCC----------CHHHHHHHHhhhcCC-CCEEEEEeeC
Q 029910 129 ------ELPT----------KKETYIRRMTTCLAA-DGSVINIVVG 157 (185)
Q Consensus 129 ------d~P~----------~~~~yiqR~GR~~~~-~g~~i~~v~~ 157 (185)
|--. |..+--||+||+|+. +|.|+-++++
T Consensus 658 ~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSS 703 (1172)
T KOG0926|consen 658 VKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSS 703 (1172)
T ss_pred hhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhh
Confidence 4322 445567999999875 4999988865
No 153
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.06 E-value=0.03 Score=52.68 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
..+.+++|-++|+.-|.+.++.++.. | +++..+||+++..+|...++...+|
T Consensus 282 ~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g----------------------- 337 (630)
T TIGR00643 282 EAGYQVALMAPTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASG----------------------- 337 (630)
T ss_pred HcCCcEEEECCHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCC-----------------------
Confidence 34679999999999999888777643 4 8999999999999999999999998
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcC
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
..+|+|+|.. ++...+++.++.+||.=+
T Consensus 338 ~~~IiVgT~~---ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 338 QIHLVVGTHA---LIQEKVEFKRLALVIIDE 365 (630)
T ss_pred CCCEEEecHH---HHhccccccccceEEEec
Confidence 6899999987 356677888888877533
No 154
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.03 E-value=0.051 Score=51.66 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=63.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
+.++||.+++++-+.++.+.|++.-+..+..+||+++..+|.+.+.+...+ ..+|+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-----------------------~~~IVV 246 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-----------------------EAKVVI 246 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-----------------------CCCEEE
Confidence 579999999999999999999875227899999999999999999999988 689999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcC
Q 029910 105 VTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
+|.. .. -..+.++.+||.-+
T Consensus 247 gTrs----al-~~p~~~l~liVvDE 266 (679)
T PRK05580 247 GARS----AL-FLPFKNLGLIIVDE 266 (679)
T ss_pred eccH----Hh-cccccCCCEEEEEC
Confidence 9975 21 24567778877655
No 155
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.77 E-value=0.066 Score=49.22 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+..+.++...+. .++++||-+++..-+.++.+.|+..-+..+..+||+++..+|.+.+.+.++|
T Consensus 12 ~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g------------- 75 (505)
T TIGR00595 12 EVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG------------- 75 (505)
T ss_pred HHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-------------
Confidence 344455554443 3578999999999999999999865336899999999999999999988888
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
..+|+|+|.. +. -..+.+..+||.-+
T Consensus 76 ----------~~~IVVGTrs----al-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 76 ----------EILVVIGTRS----AL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ----------CCCEEECChH----HH-cCcccCCCEEEEEC
Confidence 6889999975 21 23467778877544
No 156
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.77 E-value=0.076 Score=45.31 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=48.1
Q ss_pred ceeEEEEecCCCCcccCcCCCCC--------CcEEEEcCCCCCHHHHHHHHhhhcCCC---CEEEEEeeC---chHHHHH
Q 029910 99 KSHMIVVTDACLPLLSSGESAIS--------ARVLINYELPTKKETYIRRMTTCLAAD---GSVINIVVG---GEVVTLR 164 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~--------v~~VI~~d~P~~~~~yiqR~GR~~~~~---g~~i~~v~~---~e~~~~~ 164 (185)
..+|+|.+++ .+-|+.++. -++-|-.++||+.+..+|..||+.++. ...+.++.. +|.....
T Consensus 61 ~k~v~iis~A----gstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas 136 (278)
T PF13871_consen 61 EKDVAIISDA----GSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFAS 136 (278)
T ss_pred CceEEEEecc----cccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHH
Confidence 6899999999 999987764 357788999999999999999974433 333444433 4555555
Q ss_pred HHHHH
Q 029910 165 SMEES 169 (185)
Q Consensus 165 ~l~~~ 169 (185)
.+.+.
T Consensus 137 ~va~r 141 (278)
T PF13871_consen 137 TVARR 141 (278)
T ss_pred HHHHH
Confidence 54444
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.76 E-value=0.093 Score=49.87 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCC-ceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
|-+..+++++..+. .++++||-++....+..+.+.|+..-+ ..+..+|++++..+|.+.+.+.++|
T Consensus 173 KTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G---------- 239 (665)
T PRK14873 173 WARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG---------- 239 (665)
T ss_pred HHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC----------
Confidence 45566677776555 468999999999999999999987632 5799999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 130 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~ 130 (185)
..+|+|.|-. +--.=+++..+||..|-
T Consensus 240 -------------~~~IViGtRS-----AvFaP~~~LgLIIvdEE 266 (665)
T PRK14873 240 -------------QARVVVGTRS-----AVFAPVEDLGLVAIWDD 266 (665)
T ss_pred -------------CCcEEEEcce-----eEEeccCCCCEEEEEcC
Confidence 6999999975 34445567778887664
No 158
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.65 E-value=0.077 Score=48.72 Aligned_cols=108 Identities=14% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC--------CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 95 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~--------~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 95 (185)
...-++||....+..+..++.+... |.+++..|| +.++..+ |+.. ++...
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~i---Fep~---------------p~~~~ 309 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRI---FEPA---------------PEKRN 309 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccc---cCCC---------------CcccC
Confidence 3578999999998888888777632 457888888 4444433 2222 13334
Q ss_pred CCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC------------------CCCHHHHHHHHhhhcC-CCCEEEEEee
Q 029910 96 DEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLA-ADGSVINIVV 156 (185)
Q Consensus 96 ~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~------------------P~~~~~yiqR~GR~~~-~~g~~i~~v~ 156 (185)
+....+++|+|.+ ++-.+.++++.+||.-.+ |-|..+--||.||+++ ++|.|.-+++
T Consensus 310 ~~~~RkvVvstni----aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 310 GAYGRKVVVSTNI----AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred CCccceEEEEecc----hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 5567889999999 999999999999996432 6688889999999866 5699988886
Q ss_pred C
Q 029910 157 G 157 (185)
Q Consensus 157 ~ 157 (185)
.
T Consensus 386 e 386 (699)
T KOG0925|consen 386 E 386 (699)
T ss_pred H
Confidence 5
No 159
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.54 E-value=0.0072 Score=61.70 Aligned_cols=92 Identities=13% Similarity=0.234 Sum_probs=75.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC-----------CHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL-----------AETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~-----------~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (185)
--.|+||+.+.++..+.+.++...-.....+.|.+ ..-.+.+++..|+..
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~------------------- 353 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH------------------- 353 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-------------------
Confidence 56799999999999888888765322333455543 123356688889888
Q ss_pred CCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh
Q 029910 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (185)
Q Consensus 95 ~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~ 144 (185)
..++|++|.+ +.+|+|++.++.|+.++.|..-..|+|+.||+
T Consensus 354 ----~ln~L~~~~~----~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~ 395 (1606)
T KOG0701|consen 354 ----ELNLLIATSV----LEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRA 395 (1606)
T ss_pred ----hhhHHHHHHH----HHhhcchhhhhhheeccCcchHHHHHHhhccc
Confidence 6999999999 99999999999999999999999999999996
No 160
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.38 E-value=0.075 Score=52.29 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
.+.+++|.++|+.-|.+.++.+... + +++..++|..+..++.++++.++.| .
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g-----------------------~ 554 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASG-----------------------K 554 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcC-----------------------C
Confidence 3589999999999999988877653 4 7889999999999999999999998 6
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcC
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
.+|+|+|.. ++.+.+.+.++.+||-=+
T Consensus 555 ~dIVIGTp~---ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 555 IDILIGTHK---LLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred ceEEEchHH---HhhCCCCcccCCEEEeec
Confidence 999999985 367778889999887643
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.33 E-value=0.18 Score=48.13 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=65.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCC------ceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD------ISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~------~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
.+.+++..+.+ . .+..++||.++....+.+.+.+...+. .+.+..-+. ...++.+++++|+..-
T Consensus 509 ~l~~~i~~~~~-~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~------- 578 (705)
T TIGR00604 509 NLGELLVEFSK-I-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAV------- 578 (705)
T ss_pred HHHHHHHHHhh-c-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHH-------
Confidence 34445545444 2 347899999999999999988875431 122333222 2267889999997630
Q ss_pred cccCCCCCCCCCCCCceeEEEEe--cCCCCcccCcCCCCC--CcEEEEcCCCC
Q 029910 84 TEQSGDESETGKDEHKSHMIVVT--DACLPLLSSGESAIS--ARVLINYELPT 132 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~T--d~~~~~~~~G~d~~~--v~~VI~~d~P~ 132 (185)
..+...||+++ .. +++|+|+++ .+.||...+|-
T Consensus 579 ------------~~~~gavL~av~gGk----~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 579 ------------SEGRGAVLLSVAGGK----VSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ------------hcCCceEEEEecCCc----ccCccccCCCCCcEEEEEccCC
Confidence 00034589988 77 899999998 57888888775
No 162
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.14 E-value=0.17 Score=47.83 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=63.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+.+.+..++. ... .+++|-+.+.+.++.+++.|...- -..+.+.|+.+ .+.+.+++|+..-
T Consensus 458 ~~~~~~~~~~-~~~-G~~lvLfTS~~~~~~~~~~l~~~l-~~~~l~qg~~~--~~~~l~~~f~~~~-------------- 518 (636)
T TIGR03117 458 VSLSTAAILR-KAQ-GGTLVLTTAFSHISAIGQLVELGI-PAEIVIQSEKN--RLASAEQQFLALY-------------- 518 (636)
T ss_pred HHHHHHHHHH-HcC-CCEEEEechHHHHHHHHHHHHhhc-CCCEEEeCCCc--cHHHHHHHHHHhh--------------
Confidence 4455555444 333 577777778899999999997643 13456666543 4567899999730
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCC----------CCCcEEEEcCCC
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESA----------ISARVLINYELP 131 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~----------~~v~~VI~~d~P 131 (185)
.++...||++|+- +-+|+|+ ..++.||...+|
T Consensus 519 -----~~~~~~vL~gt~s----fweGvDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 519 -----ANGIQPVLIAAGG----AWTGIDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred -----cCCCCcEEEeCCc----cccccccCCccCCCCCCCcccEEEEEeCC
Confidence 0013679999999 9999999 347788877776
No 163
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.07 E-value=0.14 Score=48.42 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHH----HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELD----AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~----~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
..++..++..+.. -..+.|+..-++|---|+ .+.++|...| +.+..+.|.+...+|.+++++..+|
T Consensus 295 GKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G-------- 364 (677)
T COG1200 295 GKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASG-------- 364 (677)
T ss_pred CHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCC--------
Confidence 3466666666444 667899999999965554 5556666667 9999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN 127 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~ 127 (185)
.++++|.|-+ |+...+++.+.-+||-
T Consensus 365 ---------------~~~ivVGTHA---LiQd~V~F~~LgLVIi 390 (677)
T COG1200 365 ---------------EIDIVVGTHA---LIQDKVEFHNLGLVII 390 (677)
T ss_pred ---------------CCCEEEEcch---hhhcceeecceeEEEE
Confidence 6999999998 5788999999988876
No 164
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.87 E-value=0.17 Score=46.49 Aligned_cols=91 Identities=14% Similarity=0.229 Sum_probs=63.7
Q ss_pred HHHHHHHHHHc-cCCCCCcEEEEcCChhhHHHHHHHHhcCC----CceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 10 TLVELLHLVVA-GRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 10 ~l~~ll~~l~~-~~~~~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
-++-+|+.+.. ......++||.++|++-|.++++.+...+ .+.+..+.|+++...+.+.+++ +
T Consensus 83 f~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~--------- 150 (513)
T COG0513 83 FLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G--------- 150 (513)
T ss_pred HHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C---------
Confidence 34556666442 12222239999999999999998886542 3678999999998888755544 5
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCC-CcccCc-CCCCCCcEEEE
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACL-PLLSSG-ESAISARVLIN 127 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~-~~~~~G-~d~~~v~~VI~ 127 (185)
.+|+|+|+.++ -++.++ +++..+.++|.
T Consensus 151 ---------------~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 151 ---------------VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ---------------CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 78999998631 113455 88888988774
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.66 E-value=0.081 Score=51.15 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=70.1
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
|+.+..++....+..+......++|+||-+.+.+..+.+++.|...| +...+|...-. +|..-+-.+.-.
T Consensus 407 vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~-i~h~VLNAk~h--~~EA~Iia~AG~------- 476 (822)
T COG0653 407 VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG-IPHNVLNAKNH--AREAEIIAQAGQ------- 476 (822)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC-CCceeeccccH--HHHHHHHhhcCC-------
Confidence 56677888888888877767889999999999999999999999998 89888887644 333322222221
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCc
Q 029910 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR 123 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~ 123 (185)
...+-|+|.+ ++||.|+.--.
T Consensus 477 ----------------~gaVTiATNM----AGRGTDIkLg~ 497 (822)
T COG0653 477 ----------------PGAVTIATNM----AGRGTDIKLGG 497 (822)
T ss_pred ----------------CCcccccccc----ccCCcccccCC
Confidence 3557899999 99999986433
No 166
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.28 E-value=0.22 Score=50.16 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
.+.+++|-|+|+.-|.+.++.+... + +.+..++|..+..++.++++..+.+ .
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g-----------------------~ 703 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEG-----------------------K 703 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhC-----------------------C
Confidence 4689999999999999998887653 3 6888999999999999999999988 6
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEE
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~ 127 (185)
.+|+|+|.. ++...+.+.++.++|-
T Consensus 704 ~dIVVgTp~---lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHK---LLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHH---HHhCCCCHhhCCEEEE
Confidence 899999974 2566677888888774
No 167
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.24 E-value=0.25 Score=37.77 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC--cEEEEcCCCC
Q 029910 59 DLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (185)
Q Consensus 59 ~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v--~~VI~~d~P~ 132 (185)
+.+..+..+++++|+... ...||+++.- +++|+|+|+- +.||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~----------------------~~~iL~~~~~----~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEAC----------------------ENAILLATAR----FSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcC----------------------CCEEEEEccc----eecceecCCCCeeEEEEEecCC
Confidence 344556788999999862 2369999988 9999999985 5788777763
No 168
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.29 Score=46.99 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|-|..++++...++ .++++||-++.......+...|..+-+.++..+|+++++.+|.+...+.++|
T Consensus 230 KTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G----------- 295 (730)
T COG1198 230 KTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG----------- 295 (730)
T ss_pred HHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-----------
Confidence 45667777877665 5699999999999888888888876448999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
..+|+|.|-- +--.=+++.-+||-.+
T Consensus 296 ------------~~~vVIGtRS-----AlF~Pf~~LGLIIvDE 321 (730)
T COG1198 296 ------------EARVVIGTRS-----ALFLPFKNLGLIIVDE 321 (730)
T ss_pred ------------CceEEEEech-----hhcCchhhccEEEEec
Confidence 6999999974 3334456666666543
No 169
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=93.74 E-value=0.26 Score=48.97 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=66.3
Q ss_pred EEEcCChhhHHHHHHHHhcCC-----CceEEEEecCCCHHHHHHHHHHH---h---cccccccccccccCCCCCCCCCCC
Q 029910 29 IVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEF---R---HTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 29 IIF~~~~~~~~~l~~~L~~~~-----~~~~~~l~g~~~~~~R~~~l~~F---~---~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
+|=.++.+.+-.++..|.... .+...++|+..+...|..+.++. - .++..|.-.+..+.... +.-.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~---~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQN---SPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhc---cccc
Confidence 455567777777777775441 25688899999888888766553 1 11111211111111100 0011
Q ss_pred CceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc
Q 029910 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (185)
Q Consensus 98 ~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~ 145 (185)
+...|+|+|.+ .+-|+|+ +.+++| .-|.+....+||+||+.
T Consensus 837 ~~~~i~v~Tqv----~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 837 NHLFIVLATPV----EEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVN 877 (1110)
T ss_pred CCCeEEEEeee----EEEEecc-cCCeee--eccCcHHHHHHHhhccc
Confidence 24679999999 9999995 355554 34778999999999973
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.54 Score=43.70 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..-++||.++--.-..+.+.++..+ +....+|--.+...-..+-+-|.+| ...+|+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~-i~F~~i~EYssk~~vsRAR~lF~qg-----------------------r~~vlL 607 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE-ISFVMINEYSSKSKVSRARELFFQG-----------------------RKSVLL 607 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh-cchHHHhhhhhHhhhhHHHHHHHhc-----------------------CceEEE
Confidence 4678999999988889999998887 7888888666666666666779998 688999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHH---HHHhhhcCCC------CEEEEEeeCchHHHHHHH
Q 029910 105 VTDACLPLLSSGESAISARVLINYELPTKKETYI---RRMTTCLAAD------GSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yi---qR~GR~~~~~------g~~i~~v~~~e~~~~~~l 166 (185)
-|+-+ - .-|-.++.+|.-||.|.+|.+|.=|. ..++|+..++ -.|..+++..|.-.+..+
T Consensus 608 yTER~-h-ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 608 YTERA-H-FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred Eehhh-h-hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 99860 0 24677999999999999999987664 4557752222 355566677776555444
No 171
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.44 E-value=0.66 Score=36.40 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=59.4
Q ss_pred HHHHHHHHHccC--CCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 11 LVELLHLVVAGR--RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 11 l~~ll~~l~~~~--~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
+..++..+.. . ..+.++||.|+++.-+.+..+.++.. .++.+..++|+.+..++...++ .
T Consensus 54 ~~~~l~~~~~-~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------- 118 (203)
T cd00268 54 LIPILEKLDP-SPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----R---------- 118 (203)
T ss_pred HHHHHHHHHh-hcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----C----------
Confidence 4445565444 3 45678999999999988877766543 2378899999988776654332 2
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCC--cccCcCCCCCCcEEEEcC
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLINYE 129 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~--~~~~G~d~~~v~~VI~~d 129 (185)
..+++|+|.-.+- +...-.++++++++|.=+
T Consensus 119 -------------~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 119 -------------GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred -------------CCCEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 4789999952100 012335677888877543
No 172
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.43 E-value=0.33 Score=48.02 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=55.6
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC----CceEEE-EecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSS-LHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~-l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
-++-.+.. ...++++++-++|.--+.+.++.|...+ ...+.+ +|+.|+.+++.+++++|.+|
T Consensus 114 g~~~sl~~-a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g------------ 180 (1187)
T COG1110 114 GLLMSLYL-AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG------------ 180 (1187)
T ss_pred HHHHHHHH-HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC------------
Confidence 34444343 3455899999999998888888886642 122222 99999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecC
Q 029910 88 GDESETGKDEHKSHMIVVTDA 108 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~ 108 (185)
..+|||+|..
T Consensus 181 -----------dfdIlitTs~ 190 (1187)
T COG1110 181 -----------DFDILITTSQ 190 (1187)
T ss_pred -----------CccEEEEeHH
Confidence 7999999987
No 173
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.40 E-value=0.93 Score=44.00 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.++++-|||+|...++.+++.....+ .++..++++.+..+ ++.|. ..+++
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~-~~Vl~l~s~~~~~d----v~~W~-------------------------~~~Vv 330 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFT-KKVLVLNSTDKLED----VESWK-------------------------KYDVV 330 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcC-CeEEEEcCCCCccc----ccccc-------------------------ceeEE
Confidence 45888899999999999999998887 68999988766662 23343 48899
Q ss_pred EEecCCCCcccCcCCCCCC--cEEEEc--CCC--CCHHHHHHHHhhh
Q 029910 104 VVTDACLPLLSSGESAISA--RVLINY--ELP--TKKETYIRRMTTC 144 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v--~~VI~~--d~P--~~~~~yiqR~GR~ 144 (185)
+-|++ +.-|+++.+. +-|.-| ... .+..+..|.+||.
T Consensus 331 iYT~~----itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 331 IYTPV----ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred EEece----EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 99999 9999988754 335545 222 3456788999994
No 174
>PRK14701 reverse gyrase; Provisional
Probab=93.27 E-value=0.42 Score=49.81 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=54.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC-----CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~-----~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
++.++||.++|+.-+.++...|...+ ++.+..+||+++..++.+.++.+++|
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g----------------------- 177 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG----------------------- 177 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC-----------------------
Confidence 45799999999999999998887631 26789999999999999999999988
Q ss_pred ceeEEEEecCC
Q 029910 99 KSHMIVVTDAC 109 (185)
Q Consensus 99 ~~~iLV~Td~~ 109 (185)
..+|||+|+..
T Consensus 178 ~~dILV~TPgr 188 (1638)
T PRK14701 178 DFDILVTTAQF 188 (1638)
T ss_pred CCCEEEECCch
Confidence 68899999874
No 175
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=92.85 E-value=0.4 Score=43.07 Aligned_cols=90 Identities=23% Similarity=0.285 Sum_probs=60.7
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
+-++..+.. .....++||.|+|++-|.++++.++.. .++.+..++|+.+...+.+.++ .
T Consensus 60 lpil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~------------- 122 (460)
T PRK11776 60 LGLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---H------------- 122 (460)
T ss_pred HHHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---C-------------
Confidence 345555332 333457999999999999988877643 2378999999998877654443 3
Q ss_pred CCCCCCCCCCCceeEEEEecCCCC-ccc-CcCCCCCCcEEEEcC
Q 029910 88 GDESETGKDEHKSHMIVVTDACLP-LLS-SGESAISARVLINYE 129 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~-~~~-~G~d~~~v~~VI~~d 129 (185)
..+|+|+|+-++- ++. ..+++.++++||.=+
T Consensus 123 -----------~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 123 -----------GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred -----------CCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 3789999964211 022 456788888887533
No 176
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.22 E-value=0.67 Score=43.82 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=57.9
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
+.+++.+.. .....++||.|+|++-|.++++.+... .++.+..+||+.+...+...+ +.+
T Consensus 62 lpll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~~~------------ 125 (629)
T PRK11634 62 LPLLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---RQG------------ 125 (629)
T ss_pred HHHHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---cCC------------
Confidence 334555333 334568999999999999988776543 237899999998876665433 343
Q ss_pred CCCCCCCCCCCceeEEEEecCCCC-ccc-CcCCCCCCcEEEE
Q 029910 88 GDESETGKDEHKSHMIVVTDACLP-LLS-SGESAISARVLIN 127 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~-~~~-~G~d~~~v~~VI~ 127 (185)
.+|+|+|+.++- ++. ..+++.++.+||.
T Consensus 126 ------------~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 126 ------------PQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred ------------CCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 679999953210 022 3467788887774
No 177
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.23 E-value=10 Score=33.71 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
..++||.++|++-+.++.+.+... .++.+..++|+.+...+...+ .. ..+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~------------------------~~~ 125 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---SE------------------------NQD 125 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---cC------------------------CCC
Confidence 468999999999988877665432 238899999999887765443 22 378
Q ss_pred EEEEecCCC--CcccCcCCCCCCcEEEEcC
Q 029910 102 MIVVTDACL--PLLSSGESAISARVLINYE 129 (185)
Q Consensus 102 iLV~Td~~~--~~~~~G~d~~~v~~VI~~d 129 (185)
|+|+|+-++ -+....+++.++++||.=+
T Consensus 126 IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 126 IVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999997310 0023566788888887533
No 178
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.02 E-value=0.85 Score=41.28 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.++.-++-.+.. ...+||.+++++-+......|...| +.+..++++.+..++..++.+...+
T Consensus 39 KTl~y~lp~l~~----~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~~~~~~~i~~~~~~~------------- 100 (470)
T TIGR00614 39 KSLCYQLPALCS----DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQSKEQQKNVLTDLKDG------------- 100 (470)
T ss_pred HhHHHHHHHHHc----CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC-------------
Confidence 344444544332 3689999999999998889998888 8999999999999999999999887
Q ss_pred CCCCCCCCCCceeEEEEecC
Q 029910 89 DESETGKDEHKSHMIVVTDA 108 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~ 108 (185)
..+++++|+-
T Consensus 101 ----------~~~il~~TPe 110 (470)
T TIGR00614 101 ----------KIKLLYVTPE 110 (470)
T ss_pred ----------CCCEEEECHH
Confidence 6888988875
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=90.05 E-value=1.3 Score=43.10 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC-----------------CceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~-----------------~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
..-+.++|||..+-.+.+.+-+.|.... +..-.-+.|..+..+|.+.+.+|.....
T Consensus 716 ~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~------- 788 (1387)
T KOG1016|consen 716 TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPG------- 788 (1387)
T ss_pred cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCC-------
Confidence 3446899999998888888888886641 1334467788999999999999988631
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCC--CCEEEEEeeCc
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA--DGSVINIVVGG 158 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~--~g~~i~~v~~~ 158 (185)
...-+|++|-+ ..-|+++-.++-+|.||.-|++..=.|-+-|. .|+ +..++-+|..+
T Consensus 789 -------------lsWlfllstra----g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 789 -------------LSWLFLLSTRA----GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred -------------ceeeeeehhcc----ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 12457788999 89999999999999999999998777766553 343 36677777654
No 180
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=89.72 E-value=0.66 Score=31.89 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||++-..+...+..|+..|. .+..+.|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHH
Confidence 4458999999987788888999999995 8999999875
No 181
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.67 E-value=0.82 Score=46.29 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCC---Cce---EEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLA---DIS---FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~---~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
+.+++|.++|+.-|.++++.+.... ++. +..+||+++..+|...+++++++
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~----------------------- 177 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG----------------------- 177 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC-----------------------
Confidence 5899999999999999988887542 133 34689999999999999999987
Q ss_pred ceeEEEEecCC
Q 029910 99 KSHMIVVTDAC 109 (185)
Q Consensus 99 ~~~iLV~Td~~ 109 (185)
..+|+|+|+.+
T Consensus 178 ~~dIlV~Tp~r 188 (1171)
T TIGR01054 178 DFDILITTTMF 188 (1171)
T ss_pred CCCEEEECHHH
Confidence 58899999874
No 182
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.43 E-value=2.2 Score=38.32 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
...+-+++.|+. ....-.++|.++|++-|.++++.+...| ++.+..+-|+++...+ .+..+++
T Consensus 114 afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q--~~~L~kk----------- 179 (476)
T KOG0330|consen 114 AFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ--ANQLSKK----------- 179 (476)
T ss_pred hhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH--HHHhhcC-----------
Confidence 345678888887 5556889999999999999999887652 3899999999876544 4555655
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCC--cc-cCcCCCCCCcEEE
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLP--LL-SSGESAISARVLI 126 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~--~~-~~G~d~~~v~~VI 126 (185)
.+|||||+-++- |- ..|+.+..+.+.|
T Consensus 180 --------------PhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 180 --------------PHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred --------------CCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 457999986310 00 3566666655544
No 183
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=89.39 E-value=2.8 Score=39.05 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.+++-++-.+.. ...+||.+++..-+..-...|...| +.+..+|++++..++..+++....+
T Consensus 41 KTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~~~~~~~~~~l~~~------------- 102 (591)
T TIGR01389 41 KSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSAKEQQDIEKALVNG------------- 102 (591)
T ss_pred HhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCC-------------
Confidence 344444544332 3578999999999998888998888 8999999999999999999999888
Q ss_pred CCCCCCCCCCceeEEEEecCCC--CcccCcCCCCCCcEEEE
Q 029910 89 DESETGKDEHKSHMIVVTDACL--PLLSSGESAISARVLIN 127 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~--~~~~~G~d~~~v~~VI~ 127 (185)
..+++++|+-.+ +...+-+....+.+||.
T Consensus 103 ----------~~~il~~tpe~l~~~~~~~~l~~~~l~~iVi 133 (591)
T TIGR01389 103 ----------ELKLLYVAPERLEQDYFLNMLQRIPIALVAV 133 (591)
T ss_pred ----------CCCEEEEChhHhcChHHHHHHhcCCCCEEEE
Confidence 688888886521 00112233445666664
No 184
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=89.26 E-value=0.95 Score=42.33 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.1
Q ss_pred EEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHH
Q 029910 28 MIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEE 71 (185)
Q Consensus 28 ~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~ 71 (185)
.+||++||+-|-++...|... .++.++.+.|+|+...++.++.+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 999999999999999888543 34999999999999999999887
No 185
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.01 E-value=3 Score=37.04 Aligned_cols=77 Identities=6% Similarity=0.042 Sum_probs=52.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+.++||.++|++-|.++.+.+... -++++..++|+.+...+... +..+ .+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~~------------------------~~ 135 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LESG------------------------VD 135 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcCC------------------------CC
Confidence 468999999999999887655432 23889999999876665443 3333 68
Q ss_pred EEEEecCCCC-cc-cCcCCCCCCcEEEEc
Q 029910 102 MIVVTDACLP-LL-SSGESAISARVLINY 128 (185)
Q Consensus 102 iLV~Td~~~~-~~-~~G~d~~~v~~VI~~ 128 (185)
|+|+|+-++- ++ ...+++..+.++|.=
T Consensus 136 IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 136 ILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 9999974210 01 245678888887753
No 186
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=88.97 E-value=0.86 Score=30.36 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
..+..++|++|++...+...+..|...|+..+..+.|++.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4567999999999889999999999998677888888864
No 187
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.94 E-value=0.16 Score=48.33 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=79.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE-E
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI-V 104 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL-V 104 (185)
.++|||+.-..-++-+...|...+ +....+.|.|+...|.+.+..|..+. ..++| +
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~-~~~~~~~g~~~~~~r~~s~~~~~~~~----------------------~~~vll~ 596 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG-FVFLRYDGEMLMKIRTKSFTDFPCDP----------------------LVTALLM 596 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc-cccchhhhhhHHHHHHhhhcccccCc----------------------cHHHHHH
Confidence 499999999999998888888777 78899999999999999999999662 45544 5
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh
Q 029910 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~ 144 (185)
+.-+ ..-|+++..+.+|+-.|+-|++..--|-+-|+
T Consensus 597 Slka----g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 597 SLKA----GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRA 632 (674)
T ss_pred HHHH----hhhhhchhhhhHHHhhchhcChHHHHHHHHHH
Confidence 5666 88999999999999999999999888888776
No 188
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=88.72 E-value=3.1 Score=37.44 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=52.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.++||.|+|++-|.++.+.+... ..+.+..++|+.+...+.. .++. ..+|
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~------------------------~~~I 128 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRG------------------------GVDV 128 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcC------------------------CCcE
Confidence 47999999999999888877643 1278889999988766543 2333 4789
Q ss_pred EEEecCCCC--cccCcCCCCCCcEEEE
Q 029910 103 IVVTDACLP--LLSSGESAISARVLIN 127 (185)
Q Consensus 103 LV~Td~~~~--~~~~G~d~~~v~~VI~ 127 (185)
+|+|+-++- +....+++..+++||.
T Consensus 129 iV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 129 LVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred EEEChHHHHHHHHcCCcccccceEEEe
Confidence 999963210 0244567888888775
No 189
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=88.63 E-value=1.4 Score=31.62 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+.+++|+||++-..+...+..|...|+-.+..+.|++
T Consensus 76 ~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 76 TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 46789999999988888899999998843577888875
No 190
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.56 E-value=2 Score=40.07 Aligned_cols=76 Identities=9% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
..++||.|+|++-+.++.+.+...+ ++.+..++|+.+...+...+. . ..+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~---~------------------------~~d 136 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---Q------------------------GVD 136 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh---C------------------------CCC
Confidence 3689999999999998887765431 278999999998877655442 2 378
Q ss_pred EEEEecCCC-CcccC--cCCCCCCcEEEE
Q 029910 102 MIVVTDACL-PLLSS--GESAISARVLIN 127 (185)
Q Consensus 102 iLV~Td~~~-~~~~~--G~d~~~v~~VI~ 127 (185)
|+|+|+-.+ .++.+ .+++..+++||.
T Consensus 137 IiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 137 VIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEECHHHHHHHHHhccccchhheeeeEe
Confidence 999996310 00222 356777777664
No 191
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=88.44 E-value=1.8 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEe--cCCCCcccCcCCCCC--CcEEEEcCCCC
Q 029910 63 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVT--DACLPLLSSGESAIS--ARVLINYELPT 132 (185)
Q Consensus 63 ~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~T--d~~~~~~~~G~d~~~--v~~VI~~d~P~ 132 (185)
.+..+++++|+... +.+ ..||+++ .. +++|+|+|+ ++.||...+|-
T Consensus 31 ~~~~~~l~~f~~~~-----------------~~~---g~iL~~v~~G~----~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAAC-----------------EAR---GALLLAVARGK----VSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhc-----------------CCC---CEEEEEEeCCe----eecceecCCCccEEEEEEecCC
Confidence 35578899999862 000 2467665 34 699999998 46788877773
No 192
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=88.42 E-value=1.6 Score=30.57 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
+.+.+.+..+.. ..+.+++++||++-..+...+..|...|.-.+..+.|++..
T Consensus 43 ~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 43 SEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 334444444322 23468999999998888888999988885468889998654
No 193
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=88.41 E-value=6.4 Score=40.39 Aligned_cols=115 Identities=13% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC--C-------------------CceEEEEecCCCHHHHHHHHHHHhccccccc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL--A-------------------DISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~--~-------------------~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~ 80 (185)
..+.++.+||+++++.|..++-.|-.. + .++...=|-+++.....-+-.-|..|
T Consensus 1356 a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g----- 1430 (1674)
T KOG0951|consen 1356 AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG----- 1430 (1674)
T ss_pred hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC-----
Confidence 456799999999999999887655321 0 01112225666666666555666666
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEE-----EcC------CCCCHHHHHHHHhhhcCCCC
Q 029910 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI-----NYE------LPTKKETYIRRMTTCLAADG 149 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI-----~~d------~P~~~~~yiqR~GR~~~~~g 149 (185)
.+.++|...-| .|+-.. .+.|| .|| .+.......|.+|++.| .|
T Consensus 1431 ------------------~i~v~v~s~~~-----~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-~~ 1485 (1674)
T KOG0951|consen 1431 ------------------AIQVCVMSRDC-----YGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-AG 1485 (1674)
T ss_pred ------------------cEEEEEEEccc-----cccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC-Cc
Confidence 68888876432 122222 23344 233 35568999999999977 78
Q ss_pred EEEEEeeCchHHHHHHH
Q 029910 150 SVINIVVGGEVVTLRSM 166 (185)
Q Consensus 150 ~~i~~v~~~e~~~~~~l 166 (185)
.|+.++......+++++
T Consensus 1486 k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1486 KCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cEEEEecCchHHHHHHh
Confidence 88888877766666543
No 194
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=88.34 E-value=1.2 Score=31.22 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=30.8
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 456899999998777778888898888435888888864
No 195
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=87.68 E-value=1.5 Score=31.65 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCC-hhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSS-RDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~-~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
+.+.+.+.. .. ..+.+++|+||++ -..+...+..|...|.-.+..+.|++..
T Consensus 65 ~~~~~~~~~-~~-~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 65 EEFAELLGS-LG-ISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred HHHHHHHHH-cC-CCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 444455544 22 4567899999998 4778888888988885558888888743
No 196
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=87.14 E-value=1.1 Score=30.13 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
..+..++||||.+...+..++..|...|.-.+..|.|++..
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 55678999999998999999999999985448889998643
No 197
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=87.10 E-value=1.4 Score=30.58 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
..+.+++|+||++...+...+..|...|.-++..+.|++.
T Consensus 53 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 53 PGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3566899999999888888899998888446888888863
No 198
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=86.46 E-value=1.1 Score=31.20 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+++||+|.+-..+...+..|...| +.+..|.|++..
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G-~~~~~l~GG~~~ 97 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERG-YDVDYLAGGMKA 97 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcC-ceeEEeCCcHHh
Confidence 456899999998888899999999998 678889898743
No 199
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=86.24 E-value=1.3 Score=30.94 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||++-..+...+..|...|+-.+..+.|++.
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 346899999999888889999999998445777888764
No 200
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=86.03 E-value=4.1 Score=41.08 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHH----hcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAV----SNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L----~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
-..++|+.|.|+|---|++=++.+ ...+ +++..|..=.+..+..++++..++|
T Consensus 640 V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G---------------------- 696 (1139)
T COG1197 640 VMDGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEG---------------------- 696 (1139)
T ss_pred hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcC----------------------
Confidence 445799999999977666555555 4457 8999999999999999999999999
Q ss_pred CceeEEEEecCCCCcccCcCCCCCCcEEEE
Q 029910 98 HKSHMIVVTDACLPLLSSGESAISARVLIN 127 (185)
Q Consensus 98 ~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~ 127 (185)
+++|+|.|-. |++.++-+.+.-++|.
T Consensus 697 -~vDIvIGTHr---LL~kdv~FkdLGLlII 722 (1139)
T COG1197 697 -KVDIVIGTHR---LLSKDVKFKDLGLLII 722 (1139)
T ss_pred -CccEEEechH---hhCCCcEEecCCeEEE
Confidence 7999999976 5889999999998874
No 201
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=85.88 E-value=2 Score=29.40 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||+|++-..+...+..|...|+-.+..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 456899999999999999999999998556888888753
No 202
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.61 E-value=1.4 Score=43.06 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=44.0
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEE--------EEcCCCCCHHHHHHHHhhhcCCC---CEEEEEe-e--CchHHHHH
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVL--------INYELPTKKETYIRRMTTCLAAD---GSVINIV-V--GGEVVTLR 164 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~V--------I~~d~P~~~~~yiqR~GR~~~~~---g~~i~~v-~--~~e~~~~~ 164 (185)
...|-|..++ ++.|+.++.=+-| |-+++||+.+.-||+.||+.++. +--+.|+ + .+|..+..
T Consensus 857 eK~vAIISEA----aSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRFAS 932 (1300)
T KOG1513|consen 857 EKLVAIISEA----ASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRFAS 932 (1300)
T ss_pred cceeeeeehh----hccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHHHH
Confidence 4667778888 9999988765444 55789999999999999986554 3334444 2 24554443
Q ss_pred H
Q 029910 165 S 165 (185)
Q Consensus 165 ~ 165 (185)
.
T Consensus 933 ~ 933 (1300)
T KOG1513|consen 933 I 933 (1300)
T ss_pred H
Confidence 3
No 203
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.11 E-value=6.2 Score=32.82 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=36.2
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh-cCCCC
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-LAADG 149 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~-~~~~g 149 (185)
..|+|.=+. ++||+.+++..+.....-|.+.+++.|| ||= |-++|
T Consensus 136 ~~I~VGGn~----LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~g 181 (239)
T PF10593_consen 136 NVIAVGGNK----LSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPG 181 (239)
T ss_pred eEEEECCcc----ccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcc
Confidence 778999999 9999999999998888888877777665 574 44444
No 204
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=84.87 E-value=1.6 Score=30.24 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCCcEEEEcCC--hhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 24 PGLPMIVCCSS--RDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 24 ~~~~~IIF~~~--~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+++||||.+ +..+...+..|...|+-++..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36799999998 455778888888888557888988874
No 205
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=84.17 E-value=2.8 Score=30.90 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=31.7
Q ss_pred CCCCCcEEEEcC-ChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 22 RRPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 22 ~~~~~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
-.+.+++||||+ +-..+...+..|+..| +.+..|.|+++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G-~~v~~L~GG~~a 123 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLG-IDVPLLEGGYKA 123 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcC-CceeEeCCcHHH
Confidence 456689999996 4566777888888888 589999999754
No 206
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.06 E-value=3.1 Score=38.79 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----cCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~----~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
+.=.+|.|+|++-|.++...-+ .+| +.+.++||+++..++.+-|+ .| .
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk---~g------------------------~ 347 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELK---EG------------------------A 347 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhh---cC------------------------C
Confidence 3446778899998887765544 345 89999999999999987776 44 6
Q ss_pred eEEEEecCCCC--cccCcCCCCCCcEEE
Q 029910 101 HMIVVTDACLP--LLSSGESAISARVLI 126 (185)
Q Consensus 101 ~iLV~Td~~~~--~~~~G~d~~~v~~VI 126 (185)
.++|||+-++= +--.+.|+..+.++|
T Consensus 348 EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 348 EIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred eEEEechHHHHHHHHhhcccceeeeEEE
Confidence 78999975310 002466777777655
No 207
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=83.94 E-value=2.1 Score=29.71 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
...++++++|++-..+...+..|...|+-.+..+.|++.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 456899999999888888999998887546888999863
No 208
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.75 E-value=8.8 Score=35.90 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=63.3
Q ss_pred HHHHHHHHHc--cCCCCCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 11 LVELLHLVVA--GRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 11 l~~ll~~l~~--~~~~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
.+-+|+.|+. ...+-.++||.|+|++-+-++...... .-.|.+...-|+++...+.+.++ +.
T Consensus 236 ~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR---s~---------- 302 (691)
T KOG0338|consen 236 ALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR---SR---------- 302 (691)
T ss_pred HHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh---hC----------
Confidence 4556666554 133458999999999988776655543 33488888889999999987764 33
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcc------cCcCCCCCCcEEEEc
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLL------SSGESAISARVLINY 128 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~------~~G~d~~~v~~VI~~ 128 (185)
-+|+|||+-+ + +-++++.++.++|.=
T Consensus 303 --------------PDIVIATPGR---lIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 303 --------------PDIVIATPGR---LIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred --------------CCEEEecchh---HHHHhccCCCccccceeEEEec
Confidence 6799999863 2 457788888877753
No 209
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=82.67 E-value=4.4 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCce-EEEEecCCCH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLAE 62 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~l~g~~~~ 62 (185)
+.++++|||.+-..+...+..|...|+-. +..+.|+++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 45799999998877777888898888324 7889999744
No 210
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=82.63 E-value=5 Score=40.70 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=50.3
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc--ccccccccccccCCCCCCCCCCCCceeEE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH--TAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
..+||.+++++-+..-...|...+ +.+..++++++..++.++++++.. + ..++|
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g-----------------------~~~IL 556 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQAN-IPAASLSAGMEWAEQLEILQELSSEYS-----------------------KYKLL 556 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHhcCC-----------------------CCCEE
Confidence 679999999999876566666677 899999999999999999999876 5 58899
Q ss_pred EEecC
Q 029910 104 VVTDA 108 (185)
Q Consensus 104 V~Td~ 108 (185)
++|+-
T Consensus 557 yvTPE 561 (1195)
T PLN03137 557 YVTPE 561 (1195)
T ss_pred EEChH
Confidence 99975
No 211
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.36 E-value=8.3 Score=34.82 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
..++||.++|++-+.++.+.++.. .++.+..++|+.+...+. +++... ..+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~-----------------------~~~ 215 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR-----------------------FCD 215 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC-----------------------CCC
Confidence 368999999999999888877643 137889999998766554 344444 478
Q ss_pred EEEEecCCC-Cccc-CcCCCCCCcEEEE
Q 029910 102 MIVVTDACL-PLLS-SGESAISARVLIN 127 (185)
Q Consensus 102 iLV~Td~~~-~~~~-~G~d~~~v~~VI~ 127 (185)
|+|+|+-.+ ++.. ..+.+..+++||.
T Consensus 216 Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 216 ILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999997421 1112 2456677777765
No 212
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=82.17 E-value=5.3 Score=37.51 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=44.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
..+||.+++++-+......|...| +.+..+++..+..++..+++..+.+
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~~~~~~~~~~~~~~g 114 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQTREQQLEVMAGCRTG 114 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHhCC
Confidence 578999999999999899998888 8999999999999999999988887
No 213
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=81.89 E-value=13 Score=27.60 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHH-HHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAET-ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~-~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
...++|+.|+++..++.....+.... ++++..++++.+.. +....+ .+ .
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------~ 95 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SN-----------------------Q 95 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HT-----------------------T
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cc-----------------------c
Confidence 44699999999999998888876552 26889999998855 333333 33 4
Q ss_pred eeEEEEecCCCCc-c-cCcCCCCCCcEEEE
Q 029910 100 SHMIVVTDACLPL-L-SSGESAISARVLIN 127 (185)
Q Consensus 100 ~~iLV~Td~~~~~-~-~~G~d~~~v~~VI~ 127 (185)
.+|+|+|..++-- . ....++..+++||.
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred ccccccCcchhhccccccccccccceeecc
Confidence 8899999752100 1 12346677777775
No 214
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=81.61 E-value=6.6 Score=37.93 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHH
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 66 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~ 66 (185)
+-+|+.+.. .+..++|+.++|++-+.+..+.|...+ ++.+..++|+.+..+|.
T Consensus 70 LPiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~ 124 (742)
T TIGR03817 70 LPVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERR 124 (742)
T ss_pred HHHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHH
Confidence 445555443 345789999999999999998887652 37889999999987764
No 215
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.26 E-value=4.7 Score=37.39 Aligned_cols=96 Identities=10% Similarity=0.142 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
+..+..+||-++||+-|.++...+...+ .++..+++|+.+...+. ++.++|
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g----------------------- 215 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG----------------------- 215 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC-----------------------
Confidence 3345779999999999999998886652 26799999999888875 445565
Q ss_pred ceeEEEEecCCCC-cccC-cCCCCCCcEEEEc--------CCCCCHHHHHHHHhhh
Q 029910 99 KSHMIVVTDACLP-LLSS-GESAISARVLINY--------ELPTKKETYIRRMTTC 144 (185)
Q Consensus 99 ~~~iLV~Td~~~~-~~~~-G~d~~~v~~VI~~--------d~P~~~~~yiqR~GR~ 144 (185)
+.|+|+|+-++- ++.+ -+|+..+.++|-= ++-.++...++++.|.
T Consensus 216 -vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~ 270 (519)
T KOG0331|consen 216 -VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP 270 (519)
T ss_pred -CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC
Confidence 889999986311 1233 4577788887731 2333455555565554
No 216
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=81.17 E-value=1.5 Score=30.35 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.++++|||.+-..+...+..|...|.-.+..+.|++..
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~ 98 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKD 98 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHH
Confidence 4568999999987778888899988884347888887643
No 217
>PTZ00110 helicase; Provisional
Probab=81.04 E-value=6.2 Score=36.60 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+..+||.|+|++-|.++.+.+...+ .+.+..++|+.+...+.. ..+.+ .+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~~------------------------~~ 255 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRRG------------------------VE 255 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHcC------------------------CC
Confidence 4579999999999998888776542 367888999887665543 33444 78
Q ss_pred EEEEecCCC-CcccC-cCCCCCCcEEEE
Q 029910 102 MIVVTDACL-PLLSS-GESAISARVLIN 127 (185)
Q Consensus 102 iLV~Td~~~-~~~~~-G~d~~~v~~VI~ 127 (185)
|+|+|+-++ -++.+ -.++..+++||.
T Consensus 256 IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 256 ILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred EEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 999996310 00333 356777887764
No 218
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=80.97 E-value=5.1 Score=30.21 Aligned_cols=51 Identities=6% Similarity=-0.049 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCC---hhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~---~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+..++.. .. -.+..++||||.+ -..+..++-.|...|.-.+..+.|+++
T Consensus 81 ~~~~~~~~~-~G-I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEA-KG-IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHH-cC-CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 355556655 23 4566899999986 455667777788888656888988854
No 219
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=80.96 E-value=2.4 Score=29.60 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=30.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.++++++|.+...+...+..|...|+-.+..+.|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 5789999998888888888999988545888999864
No 220
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=80.64 E-value=2.7 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
..+++|+||.+-..+...+..|...| +.+..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G-~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMG-WEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcC-CEEEEecCcHH
Confidence 35789999998777888888998888 56777888863
No 221
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=80.41 E-value=2.7 Score=30.58 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCC-ceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~l~g~~~~ 62 (185)
...+++++||++-..+...+..|...|+ -.+..+.|++..
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 4568999999998888899999999984 368999998743
No 222
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=80.15 E-value=4.9 Score=29.13 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+++|+||.+-..+...+..|...|+-++..+.|++..
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4568999999998888899999999985567778887643
No 223
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=79.12 E-value=6 Score=30.12 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
...++||+|.+...+...+..|...|+.++..+.|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 4589999999988888888999988856899999995
No 224
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=78.76 E-value=3.6 Score=29.31 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCCCCcEEEEcCCh--hhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 22 RRPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 22 ~~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
-.+..++||||++- ..+...+..|...| +.+..+.|++..
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G-~~v~~l~GG~~~ 102 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELG-FPVKEMIGGLDW 102 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcC-CeEEEecCCHHH
Confidence 34568999999875 36788888998888 578889998643
No 225
>PRK09401 reverse gyrase; Reviewed
Probab=77.33 E-value=6.3 Score=40.15 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=47.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEE--ecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSL--HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l--~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
.+.+++|.++|+.-+.++++.+...+ ++.+..+ +++++..++.+..+.+.++
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~----------------------- 178 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG----------------------- 178 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC-----------------------
Confidence 46899999999999999999887653 1344444 4556677888888888887
Q ss_pred ceeEEEEecC
Q 029910 99 KSHMIVVTDA 108 (185)
Q Consensus 99 ~~~iLV~Td~ 108 (185)
..+|+|+|+-
T Consensus 179 ~~~IlV~Tp~ 188 (1176)
T PRK09401 179 DFDILVTTSQ 188 (1176)
T ss_pred CCCEEEECHH
Confidence 5889999964
No 226
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=77.23 E-value=6.3 Score=27.27 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHH-----HhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSA-----VSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~-----L~~~~~~~~~~l~g~~~ 61 (185)
+.+...+...........++|+||++.......+.. |...|.-++..+.|++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 51 DKLDEFLKELGKKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHHHHHHHTHGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccccccccccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 344444444333356667899999666655555555 77777448889988854
No 227
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=76.91 E-value=12 Score=39.16 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---------------CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSN---------------LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~---------------~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
+.++|+.++++.-+.++.+.|+. ..++++...||+.+..+|.+.++ +
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~---~--------------- 98 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR---N--------------- 98 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc---C---------------
Confidence 57899999999999888887742 11388999999999999876433 2
Q ss_pred CCCCCCCCCceeEEEEecCCCCcc--cCc-CCCCCCcEEEEcC
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLL--SSG-ESAISARVLINYE 129 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~--~~G-~d~~~v~~VI~~d 129 (185)
..+|||+|+-.+-++ .++ ..+.++++||.=+
T Consensus 99 ---------ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 99 ---------PPDILITTPESLYLMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred ---------CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEec
Confidence 367999997532211 222 3578888888644
No 228
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=76.39 E-value=7.2 Score=30.29 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=30.4
Q ss_pred CCCCcEEEEcCChh-hHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||.+-. .+...+..|...|+-.+..+.|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 46789999999753 5666788888888666888999853
No 229
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=75.52 E-value=6.8 Score=32.93 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||++-.++..++..|...|.-.+..+.|++.
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 456799999999999999999998888445888888843
No 230
>PLN02160 thiosulfate sulfurtransferase
Probab=75.42 E-value=8 Score=29.05 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||.+-..+...+..|...|+-.+..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 456899999999999999999999888445777888853
No 231
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=75.26 E-value=14 Score=35.39 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 67 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~ 67 (185)
..++.-++-.+.. ...+.+++|.++|+.-|.+.++.+.. .| +++..+.|+++.++|..
T Consensus 128 GKTla~~lp~~~~-al~G~~v~VvTptreLA~qdae~~~~l~~~lG-lsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 128 GKTLTATLPAGTA-ALAGLPVHVITVNDYLAERDAELMRPLYEALG-LTVGCVVEDQSPDERRA 189 (656)
T ss_pred CcHHHHHHHHHHH-hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCHHHHHH
Confidence 3445555554444 45578999999999999888777754 46 89999999998876664
No 232
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.13 E-value=26 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHH
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 66 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~ 66 (185)
...++..+.. ....++++|+|+++..++.....+.... ...+..+++......+.
T Consensus 17 ~~~~~~~~~~-~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 17 ALLPILELLD-SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred HHHHHHHHHh-cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 3444444333 3456899999999999988887776554 26788888876655554
No 233
>PRK13766 Hef nuclease; Provisional
Probab=73.59 E-value=11 Score=36.09 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=55.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCC---ceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~---~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
.++.++||.|+++.-+.+..+.+....+ .++..++|+.+..+|.+.. ..
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~---~~------------------------- 107 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW---EK------------------------- 107 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH---hC-------------------------
Confidence 3558999999999888777776665321 3788999999988875443 22
Q ss_pred eeEEEEecCCC--CcccCcCCCCCCcEEEEcCCCC
Q 029910 100 SHMIVVTDACL--PLLSSGESAISARVLINYELPT 132 (185)
Q Consensus 100 ~~iLV~Td~~~--~~~~~G~d~~~v~~VI~~d~P~ 132 (185)
.+|+|+|+-.+ -++..-+++.++++||.-+...
T Consensus 108 ~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 108 AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR 142 (773)
T ss_pred CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc
Confidence 56889886300 0023455777888888766553
No 234
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.28 E-value=20 Score=33.17 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcc--CCCCC--cEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHHHHHHhccccccc
Q 029910 9 ETLVELLHLVVAG--RRPGL--PMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (185)
Q Consensus 9 ~~l~~ll~~l~~~--~~~~~--~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~ 80 (185)
..++-+++.+... ..++. -.+|-.+|++-|.++.+.+.. ..++.+..+-|+.+.++. +..|++.
T Consensus 59 AFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~D---i~~fkee----- 130 (567)
T KOG0345|consen 59 AFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEED---IKTFKEE----- 130 (567)
T ss_pred hHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHH---HHHHHHh-----
Confidence 4455666665432 22333 569999999999887766532 245789999999777665 5667776
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCC-ccc---CcCCCCCCcEEEE
Q 029910 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLS---SGESAISARVLIN 127 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~~---~G~d~~~v~~VI~ 127 (185)
..+|||+|+-++- ++. .++|+-...++|.
T Consensus 131 ------------------~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 131 ------------------GPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred ------------------CCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 5789999986410 022 3566556776663
No 235
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=72.63 E-value=20 Score=32.96 Aligned_cols=77 Identities=17% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
.+.++||.++|++-|.++...++..+ .+.+..+.|+.+..++. .+.+.+ .
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~~------------------------~ 247 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQG------------------------V 247 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcCC------------------------C
Confidence 45689999999999887776654331 25777777776655443 334444 7
Q ss_pred eEEEEecCCC-Ccc-cCcCCCCCCcEEEE
Q 029910 101 HMIVVTDACL-PLL-SSGESAISARVLIN 127 (185)
Q Consensus 101 ~iLV~Td~~~-~~~-~~G~d~~~v~~VI~ 127 (185)
+|+|+|+-++ -++ ..++++..+.+||.
T Consensus 248 ~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 248 ELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred CEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 8999995311 002 33567777777664
No 236
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=72.33 E-value=5.5 Score=29.21 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=29.8
Q ss_pred CCCCcEEEEcC-ChhhHHHHHHHHhcC------------CCceEEEEecCCC
Q 029910 23 RPGLPMIVCCS-SRDELDAVCSAVSNL------------ADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~-~~~~~~~l~~~L~~~------------~~~~~~~l~g~~~ 61 (185)
.+.+++|++|. +-..+...+..|... |+..+..|.|++.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 45688999997 777777777788763 6567899999864
No 237
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=71.15 E-value=14 Score=26.03 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
...++++|+|.+...+...+..|...|.-.+..+.|++..
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 3457899999988888888889999885457888888643
No 238
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=71.12 E-value=20 Score=25.76 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+...+..+. .....++|+||++-..+...+..|...| +....+.|++.
T Consensus 46 ~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G-~~~v~~~GG~~ 95 (104)
T PRK10287 46 KEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMG-YTHAENAGGLK 95 (104)
T ss_pred HHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcC-CCeEEecCCHH
Confidence 34444455422 2345789999999888888899998888 45445567754
No 239
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=70.82 E-value=10 Score=32.60 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+..++.. . +-.+.+++|+||++-..+..++-.|...|+-.+..+.|++.
T Consensus 255 ~el~~~~~~-~-gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQ-E-GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHh-c-CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 444444543 1 23456899999999888888888888888545788888753
No 240
>PRK14873 primosome assembly protein PriA; Provisional
Probab=70.30 E-value=43 Score=32.10 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=31.8
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcC------CCC--CHH----HHHHHHhhhcC--CCCEEEEEeeC
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYE------LPT--KKE----TYIRRMTTCLA--ADGSVINIVVG 157 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d------~P~--~~~----~yiqR~GR~~~--~~g~~i~~v~~ 157 (185)
+.+|||.|..+.|+++ +++.+|+..| .|. ..+ -+.|-+||+++ .+|.++.-..+
T Consensus 471 ~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 471 GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 5899999996555576 3566665544 232 223 33455688743 45766654333
No 241
>PRK13767 ATP-dependent helicase; Provisional
Probab=70.07 E-value=20 Score=35.26 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=50.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHh---------------cCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVS---------------NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~---------------~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
+.++|+.+++++-+.++.+.|. ..+.+.+...||+.+..+|.+.+. +
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~---~--------------- 145 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK---K--------------- 145 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh---C---------------
Confidence 4579999999999887765443 111378899999999988865442 3
Q ss_pred CCCCCCCCCceeEEEEecCCCCcc-cCc---CCCCCCcEEEEcC
Q 029910 90 ESETGKDEHKSHMIVVTDACLPLL-SSG---ESAISARVLINYE 129 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~~~-~~G---~d~~~v~~VI~~d 129 (185)
..+|+|+|+-.+-++ ..+ -.+.++++||.=+
T Consensus 146 ---------~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 146 ---------PPHILITTPESLAILLNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred ---------CCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEec
Confidence 367999997421101 111 1356778877543
No 242
>PTZ00424 helicase 45; Provisional
Probab=69.71 E-value=38 Score=29.41 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=51.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
....++||.+++++-+.++.+.+...+ .+.+..+.|+....+. ++.+..+
T Consensus 94 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~------------------------ 146 (401)
T PTZ00424 94 LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG------------------------ 146 (401)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC------------------------
Confidence 345789999999999888887766542 2566777787665433 3444444
Q ss_pred eeEEEEecCCC--CcccCcCCCCCCcEEEEcC
Q 029910 100 SHMIVVTDACL--PLLSSGESAISARVLINYE 129 (185)
Q Consensus 100 ~~iLV~Td~~~--~~~~~G~d~~~v~~VI~~d 129 (185)
.+|+|+|+-.+ -+..+.+.+..+++||.=+
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred CCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 67999997410 0012345677778777533
No 243
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=69.11 E-value=23 Score=34.95 Aligned_cols=106 Identities=15% Similarity=0.266 Sum_probs=66.6
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChh----hHHHHHHHHhcCC-CceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRD----ELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~----~~~~l~~~L~~~~-~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
-++-+++.++.. +..++|++-+++. +++++.+.+...+ .+.+..++|+.++++|. .+...
T Consensus 102 FllPIld~~l~~--~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~--------- 166 (851)
T COG1205 102 FLLPILDHLLRD--PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRN--------- 166 (851)
T ss_pred HHHHHHHHHhhC--cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhC---------
Confidence 456677776662 2247888889864 5567777777665 58899999999999997 33444
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCc-ccCcC-----CCCCCcEEEEcCCC-------CCHHHHHHHHhhh
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPL-LSSGE-----SAISARVLINYELP-------TKKETYIRRMTTC 144 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~~~G~-----d~~~v~~VI~~d~P-------~~~~~yiqR~GR~ 144 (185)
+.+||++|+--+-+ +-|.. .+-...+||.=++. .++.-.+.|..|.
T Consensus 167 --------------pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 167 --------------PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred --------------CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 58899887531100 11111 12235666654444 3566666777764
No 244
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=68.62 E-value=8.1 Score=38.41 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC------CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 95 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 95 (185)
+.-.+-++||-.--...-.|..+|..+ .......+|+.+...+..++.+.-..+
T Consensus 640 ~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g-------------------- 699 (1282)
T KOG0921|consen 640 RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG-------------------- 699 (1282)
T ss_pred cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc--------------------
Confidence 444577899998888888898888664 235688999999999999998887776
Q ss_pred CCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC------------------CCCHHHHHHHHhhhcC-CCCEEEEEee
Q 029910 96 DEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLA-ADGSVINIVV 156 (185)
Q Consensus 96 ~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~------------------P~~~~~yiqR~GR~~~-~~g~~i~~v~ 156 (185)
..+++++|.+ +.--+.+.++..||.-+. -.+.-..+||-||+++ ++|.|-..+.
T Consensus 700 ---v~kii~stni----aetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs 772 (1282)
T KOG0921|consen 700 ---VTKIILSTNI----AETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCS 772 (1282)
T ss_pred ---ccccccccce----eeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccH
Confidence 4667777777 666666666555553321 2255677899999754 5677766553
No 245
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.33 E-value=13 Score=33.32 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=45.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHH
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~ 70 (185)
-+.+|+.|.+ ...+.=++||++|++-+-++++.|...| ++++..+.|+++.-.....+.
T Consensus 62 aLPil~rLse-dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~ 123 (442)
T KOG0340|consen 62 ALPILNRLSE-DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILS 123 (442)
T ss_pred hHHHHHhhcc-CCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcc
Confidence 3556777444 6677889999999999999999997654 378999999987766655543
No 246
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.38 E-value=17 Score=33.95 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=61.1
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
-++..|.+...+--++||-++++.-+.+++..+... .++.+..+.|.-+.+.-..-+..--.+
T Consensus 203 PIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~-------------- 268 (620)
T KOG0350|consen 203 PIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE-------------- 268 (620)
T ss_pred HHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc--------------
Confidence 345554443456689999999999999999888654 236788888776655443333322222
Q ss_pred CCCCCCCCCceeEEEEecCCCC--c-ccCcCCCCCCcEEEE
Q 029910 90 ESETGKDEHKSHMIVVTDACLP--L-LSSGESAISARVLIN 127 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~--~-~~~G~d~~~v~~VI~ 127 (185)
+.++|||+|+.++= | .-.|+|+...+++|.
T Consensus 269 --------~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 269 --------CRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred --------cccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 26899999997410 0 046888888887664
No 247
>PRK05320 rhodanese superfamily protein; Provisional
Probab=67.01 E-value=11 Score=31.63 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=34.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAET 63 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~ 63 (185)
..+++++||.+-..++..+..|...|+-.+..|.|++..-
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w 213 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKY 213 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHH
Confidence 5689999999999999999999999844588999998553
No 248
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=66.57 E-value=28 Score=34.57 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~l 69 (185)
.++.-.+-.+.. -..+..+.|-++|+.-|.+.++++.. .| +++.++.|+++..+|....
T Consensus 108 KTL~a~Lpa~~~-al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y 170 (896)
T PRK13104 108 KTLVATLPAYLN-AISGRGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQEAY 170 (896)
T ss_pred chHHHHHHHHHH-HhcCCCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHHHHh
Confidence 344444444333 23457899999999999988888764 36 8999999999999886554
No 249
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=65.80 E-value=37 Score=33.35 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+|..|...+.-..|.+|.|+---...+..+.-+-.+.+.+..+||+ .++|....+.+...
T Consensus 206 ~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~ 265 (971)
T KOG0385|consen 206 LLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLP 265 (971)
T ss_pred HHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhcc
Confidence 4444333244468999999865544455555555567999999998 59999999988776
No 250
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=65.31 E-value=76 Score=26.02 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=64.4
Q ss_pred CCCcEEEEcCC------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 24 PGLPMIVCCSS------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 24 ~~~~~IIF~~~------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
+...+||+.|. ...++.|++.|+..| +.+ .++.+++..+-.+.+++|.+..+
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lg-F~V-~~~~nlt~~~~~~~l~~f~~~~~-------------- 71 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLG-YEV-EVKNNLTAEEILEELKEFASPDH-------------- 71 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCC-CEE-EEeCCCCHHHHHHHHHHHHhccC--------------
Confidence 45678888874 355889999999999 565 56778999999999999985210
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcC-CCCCHHHHHHHHh
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-LPTKKETYIRRMT 142 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d-~P~~~~~yiqR~G 142 (185)
....++|+. . ++.|.. +.++-.| -+-+.++.++...
T Consensus 72 ------~~~d~~v~~-~----~sHG~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 72 ------SDSDSFVCV-I----LSHGEE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred ------CCCCeeEEE-E----CCCCCC----CEEEEecCcEEEHHHHHHhhc
Confidence 134455555 4 688865 7777777 6667788877775
No 251
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=65.29 E-value=30 Score=32.11 Aligned_cols=61 Identities=10% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
..++..+||.|+|++-|-+.+..++. +..+.+..+-|+-+...- .++..++
T Consensus 151 ~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e---~~kl~k~---------------------- 205 (543)
T KOG0342|consen 151 PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE---ADKLVKG---------------------- 205 (543)
T ss_pred CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH---HHHhhcc----------------------
Confidence 55778999999999988776655543 323667777777443333 3334445
Q ss_pred CceeEEEEecCC
Q 029910 98 HKSHMIVVTDAC 109 (185)
Q Consensus 98 ~~~~iLV~Td~~ 109 (185)
+++||||+-+
T Consensus 206 --~niliATPGR 215 (543)
T KOG0342|consen 206 --CNILIATPGR 215 (543)
T ss_pred --ccEEEeCCch
Confidence 8899999874
No 252
>PRK01415 hypothetical protein; Validated
Probab=65.13 E-value=15 Score=30.76 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~ 64 (185)
....+++++||.+-..++..+..|.+.|+-.+..|.|++..-.
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~ 210 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYL 210 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHH
Confidence 3456899999999999999999999999546888999975543
No 253
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=64.50 E-value=22 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.-+||-.+=..-.+.=...|...| +.+..+++.++.++|.+++.++..|
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~G-i~A~~lnS~l~~~e~~~v~~~l~~g 106 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAAG-IRAAYLNSTLSREERQQVLNQLKSG 106 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHcC-ceeehhhcccCHHHHHHHHHHHhcC
Confidence 466666666666665566677778 9999999999999999999999999
No 254
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=63.56 E-value=28 Score=33.82 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~ 68 (185)
.++..++-.++. ...+.++.|-++|..-|.+.++++.. .| +++..+.|+++.++|...
T Consensus 82 KTLva~lpa~l~-aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~ 143 (745)
T TIGR00963 82 KTLTATLPAYLN-ALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLILSGMSPEERREA 143 (745)
T ss_pred cHHHHHHHHHHH-HHhCCCEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEeCCCCHHHHHHh
Confidence 445555544333 23467899999999988888877654 36 899999999998877654
No 255
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=63.15 E-value=13 Score=32.25 Aligned_cols=56 Identities=9% Similarity=0.157 Sum_probs=41.2
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~ 82 (185)
..+.++++|||.+-..+...+.+|...|+-.+..|.|++..-. +.+....++|.+.
T Consensus 168 ~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~-----~~~~~~~~~w~G~ 223 (314)
T PRK00142 168 PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYG-----EDPETQGLLWDGK 223 (314)
T ss_pred CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHH-----HhhccccceeecC
Confidence 3466899999999888999999999998445889999975543 3444444456554
No 256
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=62.92 E-value=35 Score=24.27 Aligned_cols=36 Identities=3% Similarity=0.075 Sum_probs=27.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
...++|++|++-..+...+..|...|+-.+.. -|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAEN-AGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEe-cCCH
Confidence 45789999999888888899999988433443 4664
No 257
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=59.17 E-value=26 Score=26.58 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 48 (185)
+.+.++.|+++... .+.+++|.|.+.+.++.|-+.|=..
T Consensus 14 ~~~~~c~L~~ka~~---~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 14 LEALLCELAEKALR---AGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred HHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 45567777776544 5799999999999999999988544
No 258
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=58.66 E-value=22 Score=30.62 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCCh-hhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~-~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+.+++..+ . -.+..++||||.+- ..+..++..|...|+-++..|.|+++
T Consensus 89 ~~~~~~l~~~-G-i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 89 EAFAAAVSAL-G-IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 4555666652 2 34567999999765 34567777888888656899999864
No 259
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=58.26 E-value=91 Score=24.61 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.+.++-++-.+...++.+++.|+.. +++.+...||..++.+...++++-+..
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s 99 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS 99 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 3467777778888999999999754 557777779999888888888887775
No 260
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=57.66 E-value=41 Score=32.99 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHh----cCCCceEEEEecCCC-HHHHHHH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLA-ETERTLI 68 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~----~~~~~~~~~l~g~~~-~~~R~~~ 68 (185)
..++..++-.++. ...+.++.|.++|+.-|.+-++.+. ..| +++..+.|+++ .++|...
T Consensus 103 GKTL~a~lp~~l~-al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~~~ 166 (790)
T PRK09200 103 GKTLTATMPLYLN-ALEGKGVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLNFSDIDDASEKKAI 166 (790)
T ss_pred cchHHHHHHHHHH-HHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCcHHHHHHh
Confidence 3455555544333 3457899999999988887766654 446 89999999999 7777643
No 261
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=57.36 E-value=1.2e+02 Score=26.06 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHc--cCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 7 FQETLVELLHLVVA--GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 7 ~~~~l~~ll~~l~~--~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
|...+-+|+..++. ......+++|.++..++.+.+-..|...+ +..--+.|.+-..+....-. +...+ .
T Consensus 97 KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~-~~~kr~sg~~l~~~~~~~~~-~~~~~-------~ 167 (297)
T PF11496_consen 97 KFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKK-LNYKRYSGESLYDEKHKVPK-NGNTE-------S 167 (297)
T ss_dssp HHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSS-SEEEESSS--S--S---S----------------
T ss_pred hHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCC-eeEEecCCCCCcCccccCCc-ccccc-------c
Confidence 45566667776533 14556899999999999999988888776 78878887755554443220 00000 0
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccC----cCCCCCCcEEEEcCCCCCH-HHHHHHHhhhcC--CCCEEEEEeeC
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSS----GESAISARVLINYELPTKK-ETYIRRMTTCLA--ADGSVINIVVG 157 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~----G~d~~~v~~VI~~d~P~~~-~~yiqR~GR~~~--~~g~~i~~v~~ 157 (185)
.-..+.....++.....|-++|+-. +.. ..+-..+++||-||.--++ ...++++-...+ +.-.+|-++..
T Consensus 168 ~~~~~~~~~~~~~~~~~i~L~ts~~---l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~ 244 (297)
T PF11496_consen 168 NSSNNSKKKDKGSLSVWIHLITSDQ---LYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPS 244 (297)
T ss_dssp --------------SEEEEEEESS------TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEET
T ss_pred ccccccccccccccceEEEEecCcc---ccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeC
Confidence 0011111222333345555554430 333 2334477899999975432 244555522222 35667777776
Q ss_pred chHHHH
Q 029910 158 GEVVTL 163 (185)
Q Consensus 158 ~e~~~~ 163 (185)
+..+.+
T Consensus 245 nSiEHi 250 (297)
T PF11496_consen 245 NSIEHI 250 (297)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 655544
No 262
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=57.27 E-value=45 Score=33.38 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=34.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHH
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~ 68 (185)
.+++|-++|+.-|.+.++++... | +++.++.|+++..++.+.
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHH
Confidence 46888899999999888887643 5 889999999999988644
No 263
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=55.89 E-value=43 Score=31.21 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
++++|+-.+|+=-+.+=+..+..- +.-.++.++|..++++|.+. |.+ .+
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~---w~~-------------------------~k 109 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREEL---WAK-------------------------KK 109 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHH---Hhh-------------------------CC
Confidence 348888889986555444444332 22478899999999999765 333 67
Q ss_pred EEEEecCC--CCcccCcCCCCCCcEEEEcCCCCCHH--HHHHHHhhhc---CCC-CEEEEEeeCchHHHHHHHHHHhCCc
Q 029910 102 MIVVTDAC--LPLLSSGESAISARVLINYELPTKKE--TYIRRMTTCL---AAD-GSVINIVVGGEVVTLRSMEESLGLI 173 (185)
Q Consensus 102 iLV~Td~~--~~~~~~G~d~~~v~~VI~~d~P~~~~--~yiqR~GR~~---~~~-g~~i~~v~~~e~~~~~~l~~~~~~~ 173 (185)
|+|+|+-- --|.+-=+|+.++.++|.=+.++.+- .|+.=+-.-. .++ =.+++--.+.+.+..+.+.+.+|..
T Consensus 110 VfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe 189 (542)
T COG1111 110 VFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIE 189 (542)
T ss_pred EEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcc
Confidence 89998530 00034557999999988755554322 2333222211 111 1222222345777777777777643
No 264
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=55.66 E-value=24 Score=29.66 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChh-hHHHHHHHHhcCCCceEEEEecCCCHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLAET 63 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~l~g~~~~~ 63 (185)
+.+.+++..+ . ..+..++||||.+.. .+..++..|...|+-.+..+.|+++.=
T Consensus 73 ~~~~~~~~~~-G-i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W 126 (281)
T PRK11493 73 ETFAVAMREL-G-VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGW 126 (281)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHH
Confidence 4555555552 2 456689999998754 355677778888855588888886443
No 265
>COG1204 Superfamily II helicase [General function prediction only]
Probab=54.28 E-value=36 Score=33.23 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh---cCCCceEEEEecCCCHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVS---NLADISFSSLHSDLAETE 64 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~---~~~~~~~~~l~g~~~~~~ 64 (185)
+.|+|--|+++.-|.+.++.++ ..| +++..++|+.+...
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~G-irV~~~TgD~~~~~ 117 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELG-IRVGISTGDYDLDD 117 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcC-CEEEEecCCcccch
Confidence 5789999999999999998888 567 99999999987554
No 266
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=54.20 E-value=10 Score=32.36 Aligned_cols=80 Identities=14% Similarity=0.292 Sum_probs=48.9
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.++.-|+||+|+.........+.+++.- -..+.+.|.... .-..+++ ..+
T Consensus 59 dDp~mKaIVv~q~vpGt~~af~kIkekR-pDIl~ia~~~~E--Dp~~i~~---------------------------~aD 108 (275)
T PF12683_consen 59 DDPDMKAIVVSQAVPGTAEAFRKIKEKR-PDILLIAGEPHE--DPEVISS---------------------------AAD 108 (275)
T ss_dssp G-TTEEEEEEE-SS---HHHHHHHHHH--TTSEEEESS--S---HHHHHH---------------------------HSS
T ss_pred cCCCccEEEEeCCCcchHHHHHHHHhcC-CCeEEEcCCCcC--CHHHHhh---------------------------ccC
Confidence 6778999999998877777777776542 246666666433 2222322 377
Q ss_pred EEEEecCCCCcccCcCCCC------CCcEEEEcCCCCCHH
Q 029910 102 MIVVTDACLPLLSSGESAI------SARVLINYELPTKKE 135 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~------~v~~VI~~d~P~~~~ 135 (185)
+.+.+|- .+||..++ ++...|+|.+|+...
T Consensus 109 i~~~~D~----~~~G~~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 109 IVVNPDE----ISRGYTIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp EEEE--H----HHHHHHHHHHHHHTT-S-EEEEEETTGGG
T ss_pred eEeccch----hhccHHHHHHHHHcCCceEEEEechhhcc
Confidence 8888998 89988765 578999999999776
No 267
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=54.18 E-value=1.7e+02 Score=26.40 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHH
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETER 65 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R 65 (185)
|-|.+..-++..+ +++..+-|=.+..+.|.+|+..|+.. .++.+..+||+-++.-|
T Consensus 129 KTEMif~~i~~al---~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr 185 (441)
T COG4098 129 KTEMIFQGIEQAL---NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR 185 (441)
T ss_pred chhhhHHHHHHHH---hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc
Confidence 4556666666543 46788999999999999999999764 33789999999877666
No 268
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=53.83 E-value=15 Score=25.43 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEE-EEecCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLA 61 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~l~g~~~ 61 (185)
..++++|+|.+-......+..|+..| +... .+.|++.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G-~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAG-FTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcC-CccccccCCcHH
Confidence 46899999999999999999999998 5655 6667643
No 269
>PRK02362 ski2-like helicase; Provisional
Probab=53.67 E-value=32 Score=33.09 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=31.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAET 63 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~ 63 (185)
++.++|+.+++++-|.+..+.++.. | +++..++|+.+..
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g-~~v~~~tGd~~~~ 107 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELG-VRVGISTGDYDSR 107 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCC-CEEEEEeCCcCcc
Confidence 4578999999999999988887754 5 7899999987543
No 270
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=53.22 E-value=23 Score=24.78 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=24.2
Q ss_pred EEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 28 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.||.+.....+..+++.|.... ..+....|-+
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~-~~v~~~~Ghl 32 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEE-YIVIATSGHL 32 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTT-EEEEEESSSS
T ss_pred CEEEEeCHHHHHHHHHHcCCCC-EEEEEeCCcc
Confidence 3678889999999999997443 5677777754
No 271
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=53.06 E-value=1.1e+02 Score=23.81 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEE-EecCCCHHHHHHHHHHHhcc
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~-l~g~~~~~~R~~~l~~F~~~ 75 (185)
+-+.++++.. ..++.++-++-.+.+.++.+.+.|+.. +++.+.. .||-+...+...++++.+..
T Consensus 33 dl~~~ll~~~---~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~ 98 (171)
T cd06533 33 DLMPALLELA---AQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS 98 (171)
T ss_pred HHHHHHHHHH---HHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc
Confidence 4444555552 223578888888889999999888754 5577766 78888888887788887776
No 272
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=52.03 E-value=74 Score=21.74 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCcEEEEcC------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHH
Q 029910 25 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERT 66 (185)
Q Consensus 25 ~~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~ 66 (185)
..+++||.. .+--|..+.+.|...+ +....+.=....+.|.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-i~y~~idv~~~~~~~~ 53 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-VDFGTFDILEDEEVRQ 53 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-CCeEEEEcCCCHHHHH
Confidence 389999975 5777888999999887 7777776444444333
No 273
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=51.97 E-value=61 Score=20.73 Aligned_cols=44 Identities=5% Similarity=0.037 Sum_probs=31.7
Q ss_pred EEEEc-CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 28 MIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 28 ~IIF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
+.||. +++-.|......|.+.+ +....++-+.++..+.+..+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~-i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG-VDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 55666 46788888889998887 8888888777666665544443
No 274
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=51.52 E-value=34 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 49 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~ 49 (185)
+.++.|+++... .+.+++|+|...+.+++|-+.|=...
T Consensus 16 ~~~c~L~~k~~~---~g~rv~V~~~d~~~a~~lD~~LW~~~ 53 (137)
T PF04364_consen 16 RFACRLAEKAYR---QGQRVLVLCPDEEQAEALDELLWTFS 53 (137)
T ss_dssp HHHHHHHHHHHH---TT--EEEE-SSHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHCCC
Confidence 556777777655 46899999999999999999995553
No 275
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=51.13 E-value=50 Score=28.58 Aligned_cols=51 Identities=6% Similarity=-0.004 Sum_probs=34.6
Q ss_pred HHHHHHHHccCCCCCcEEEEcC-ChhhHHHHHHHHhcCCCceEEEEecCCCHH
Q 029910 12 VELLHLVVAGRRPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAET 63 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~ 63 (185)
.+.++.+........++||||. +-..+...+..|...| +.+..+.|++..-
T Consensus 61 ~~~i~~~~~~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G-~~v~~L~GG~~aw 112 (311)
T TIGR03167 61 AAHVEQWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIG-FRVPRLEGGYKAY 112 (311)
T ss_pred HHHHHHHHhhcCCCCcEEEEECCCChHHHHHHHHHHHcC-CCEEEecChHHHH
Confidence 3344443332233446999995 5567888899999998 5888999986443
No 276
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=50.26 E-value=86 Score=21.94 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=28.1
Q ss_pred CcEEEEcC------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHH
Q 029910 26 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 26 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~ 68 (185)
.+++||.. ++--|..+.+.|...+ +....+.=...++.|...
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~-i~~~~~di~~~~~~~~~l 59 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACG-VPFAYVNVLEDPEIRQGI 59 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcC-CCEEEEECCCCHHHHHHH
Confidence 89999963 4666777778888877 676666544445444443
No 277
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=50.21 E-value=35 Score=35.12 Aligned_cols=118 Identities=12% Similarity=0.003 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|.+....++..+.. .+...++|+|+.-....+-+...+...+ ++...--++ +.-...+..|++=
T Consensus 1204 kI~~v~~~il~iK~-k~~qekvIvfsqws~~ldV~e~~~~~N~-I~~~~~~~t---~d~~dc~~~fk~I----------- 1267 (1394)
T KOG0298|consen 1204 KIDSVVIAILYIKF-KNEQEKVIVFSQWSVVLDVKELRYLMNL-IKKQLDGET---EDFDDCIICFKSI----------- 1267 (1394)
T ss_pred CchhHHHHHHHHhc-cCcCceEEEEEehHHHHHHHHHHHHhhh-hHhhhccCC---cchhhhhhhcccc-----------
Confidence 45555556665444 6666899999988777777777776655 444333222 3333445566553
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeC
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVG 157 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~ 157 (185)
-..|+-+.. .+-|+++-.+.+|+..++=-++..=.|-+||. -|+. -.+..|+..
T Consensus 1268 -------------~clll~~~~----~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~ 1325 (1394)
T KOG0298|consen 1268 -------------DCLLLFVSK----GSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVN 1325 (1394)
T ss_pred -------------eEEEEEecc----CcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhc
Confidence 234455666 79999999999999999989999999999995 3332 344445443
No 278
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=50.03 E-value=73 Score=31.48 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHh----cCCCceEEEEecCCCHHHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~----~~~~~~~~~l~g~~~~~~R~~~l 69 (185)
.++...+-.++. ...+.++-|.++|..-|.+-++++. ..| +++..+.|+++..+|.+..
T Consensus 107 KTLva~lpa~l~-aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~y 169 (830)
T PRK12904 107 KTLVATLPAYLN-ALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLG-LSVGVILSGMSPEERREAY 169 (830)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEecCHHHHHHHHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHhc
Confidence 445555544333 2345678899999877776666654 446 8999999999999998774
No 279
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=48.17 E-value=1.3e+02 Score=29.79 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=46.3
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (185)
.|..|.. .....|=+|-|++---=.++.+.=+-.+.+++..+||. +.+|.++-..+..+.
T Consensus 438 FlayLkq-~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~----------------- 497 (941)
T KOG0389|consen 438 FLAYLKQ-IGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNK----------------- 497 (941)
T ss_pred HHHHHHH-cCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccC-----------------
Confidence 3444444 33356666777763333344444444566889999987 589999888888763
Q ss_pred CCCCCceeEEEEecC
Q 029910 94 GKDEHKSHMIVVTDA 108 (185)
Q Consensus 94 ~~~~~~~~iLV~Td~ 108 (185)
...+|||+|--
T Consensus 498 ----~~ydVllTTY~ 508 (941)
T KOG0389|consen 498 ----DDYDVLLTTYN 508 (941)
T ss_pred ----CCccEEEEEee
Confidence 26899999966
No 280
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.46 E-value=27 Score=30.63 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++++||++-..+...+..|...|+-.+..+.|++.
T Consensus 312 ~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 312 SAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 355789999999888899999999988445788899864
No 281
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=47.35 E-value=83 Score=30.00 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHHHHc---cCCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCH
Q 029910 11 LVELLHLVVA---GRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAE 62 (185)
Q Consensus 11 l~~ll~~l~~---~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~ 62 (185)
+.-.|+.|.. ....+--+||-.+|++-|-+.+..|+.-| .+++..+-|+...
T Consensus 124 lvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~ 181 (758)
T KOG0343|consen 124 LVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDV 181 (758)
T ss_pred hHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchh
Confidence 4445555443 14456789999999999999999997653 3678888888653
No 282
>PRK00254 ski2-like helicase; Provisional
Probab=47.27 E-value=66 Score=30.83 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=31.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCHH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAET 63 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~~ 63 (185)
.+.++|+-+++++-+.+..+.+.. .| +++..++|+.+..
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g-~~v~~~~Gd~~~~ 108 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLG-LRVAMTTGDYDST 108 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCCc
Confidence 357899999999999988877753 35 7899999997754
No 283
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=47.13 E-value=1.6e+02 Score=24.14 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCh-----------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 23 RPGLPMIVCCSSR-----------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 23 ~~~~~~IIF~~~~-----------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
.+..-+||+.|.. ..++.|.+.|+..| +++ .++-+++..+-.+.+++|.+..
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lg-F~V-~~~~dlt~~em~~~l~~~~~~~--------------- 68 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLG-YEV-HVKNNLTAEEMLEELKEFAERP--------------- 68 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHhcc---------------
Confidence 4557788888863 47999999999999 565 5577899999999999998731
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC-CCCHHHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRM 141 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~-P~~~~~yiqR~ 141 (185)
.+ ...+++|+. + ++.|. .+.|+-.|- +-+.++.....
T Consensus 69 --~~--~~~d~~v~~-~----~sHG~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 69 --EH--SDSDSFVCV-L----LSHGE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred --cc--CCCCEEEEE-E----cCCCC----CCeEEEecCCEEEHHHHHHhc
Confidence 00 124455555 5 78884 367777665 55677766666
No 284
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.66 E-value=34 Score=29.48 Aligned_cols=75 Identities=13% Similarity=0.253 Sum_probs=53.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
.-.++|.|.|++-|-++.+.... .+.++++++.|+++-....+.+.. . -
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~---~------------------------P 162 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN---C------------------------P 162 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC---C------------------------C
Confidence 35789999999988887765432 256899999999998887777655 2 5
Q ss_pred eEEEEecCCCCcc--cCcCCCCCCcEEE
Q 029910 101 HMIVVTDACLPLL--SSGESAISARVLI 126 (185)
Q Consensus 101 ~iLV~Td~~~~~~--~~G~d~~~v~~VI 126 (185)
+|+|+|+-+.--+ .+.+++..+.+-|
T Consensus 163 hivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 163 HIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred eEEEcCcHHHHHHHHhccCchhhcceee
Confidence 6899998632222 3566777777654
No 285
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=46.28 E-value=48 Score=33.23 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+.=+||-|+|+..+.++.+.++.. + +.+..++|+....+. +.+.++|
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~q---iaelkRg 488 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQQ---IAELKRG 488 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHHH---HHHHhcC
Confidence 566899999999999988877543 5 889999998665555 5666666
No 286
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=46.21 E-value=1.4e+02 Score=23.27 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
...+++++.+.. ...+++++|.=...-....++..|...| ..+...+...+ + +.+.-.
T Consensus 29 ~a~v~l~~~~~~-~l~gk~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~~~--~----l~~~l~-------------- 86 (168)
T cd01080 29 AGILELLKRYGI-DLAGKKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSKTK--N----LKEHTK-------------- 86 (168)
T ss_pred HHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECCch--h----HHHHHh--------------
Confidence 344566666433 5666777777655444556899998887 67777776531 1 222222
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHH
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKE 135 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~ 135 (185)
..+++|++.....++.+. ++..-.++|+...|++++
T Consensus 87 ----------~aDiVIsat~~~~ii~~~-~~~~~~viIDla~prdvd 122 (168)
T cd01080 87 ----------QADIVIVAVGKPGLVKGD-MVKPGAVVIDVGINRVPD 122 (168)
T ss_pred ----------hCCEEEEcCCCCceecHH-HccCCeEEEEccCCCccc
Confidence 366777655411111111 344456899999999877
No 287
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=45.20 E-value=32 Score=30.23 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+.+++++||++-..+...+..|...|+-++..+.|++
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 45689999999987788888899988854678888764
No 288
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=45.01 E-value=1.1e+02 Score=30.64 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHH----HHHHHHhcCCCceEEEEecCCCHHHHHHHHH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELD----AVCSAVSNLADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~----~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
..++...+..++. ...+.++-|.+.+..-|. .+...+...| +++.++.+++++.+|.+++.
T Consensus 107 GKTLvA~l~a~l~-al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 107 GKTLVGTLAVYLN-ALSGKGVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred CChHHHHHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHHHHhc
Confidence 3456666655444 456788888888865555 4445555567 89999999999999998765
No 289
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=43.74 E-value=52 Score=31.19 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
+.+.+++.. .. -.+.+++|+||++-..+...+-.|+..|.-.+..+.|++
T Consensus 209 ~el~~~~~~-~G-i~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 209 QDMPEILRD-LG-ITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred HHHHHHHHH-cC-CCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 445555554 22 346689999999988888888888888843578888883
No 290
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=43.04 E-value=1.3e+02 Score=22.03 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=29.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCC----CceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
..++++.+++...+..+...+.... ......+++... .....++..+
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 104 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESG 104 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcC
Confidence 4789999999888888877776543 133444544432 3334455554
No 291
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=43.02 E-value=49 Score=32.73 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhcCC--------------------------CceEEEEecCCCHHHHH
Q 029910 24 PGLPMIVCC-SSRDELDAVCSAVSNLA--------------------------DISFSSLHSDLAETERT 66 (185)
Q Consensus 24 ~~~~~IIF~-~~~~~~~~l~~~L~~~~--------------------------~~~~~~l~g~~~~~~R~ 66 (185)
...+.|||| +++.-+.++++.+...+ .+++..+.|+.+.....
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~ 129 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW 129 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH
Confidence 345677766 99888887776654432 26788889997766543
No 292
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.90 E-value=1.1e+02 Score=28.41 Aligned_cols=51 Identities=6% Similarity=0.157 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHccCC---------CCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecC
Q 029910 9 ETLVELLHLVVAGRR---------PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSD 59 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~---------~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~ 59 (185)
+-|+-++..++.... ....+||..+|++-++++++.-+.. ...++...+|+
T Consensus 127 aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg 189 (482)
T KOG0335|consen 127 AFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGG 189 (482)
T ss_pred HHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCC
Confidence 445566666555221 2478999999999999998776543 23678888888
No 293
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=41.98 E-value=1.5e+02 Score=22.43 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+...+|++. ...+..++++.|+-.+....+-++..|.+.| ..+...|.... .+++.-+
T Consensus 13 ~a~~~ll~~-~~~~~~gk~v~VvGrs~~vG~pla~lL~~~g-atV~~~~~~t~------~l~~~v~-------------- 70 (140)
T cd05212 13 KAVKELLNK-EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKTI------QLQSKVH-------------- 70 (140)
T ss_pred HHHHHHHHH-cCCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeCCCCc------CHHHHHh--------------
Confidence 445667776 4447788999999999999999999999887 78988886432 2222222
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT 132 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~ 132 (185)
..+|+|+.-...|++ .+-.+..=.+||++++..
T Consensus 71 ----------~ADIVvsAtg~~~~i-~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 71 ----------DADVVVVGSPKPEKV-PTEWIKPGATVINCSPTK 103 (140)
T ss_pred ----------hCCEEEEecCCCCcc-CHHHcCCCCEEEEcCCCc
Confidence 377777765523332 233344445788888776
No 294
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=41.95 E-value=48 Score=30.64 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=52.7
Q ss_pred HHHHHHHHHHc-----cCCCCCcEEEEcCChhhHHHHHHHHhcC----C-CceEEEEecCCCHHHHHHHHHHHhcccccc
Q 029910 10 TLVELLHLVVA-----GRRPGLPMIVCCSSRDELDAVCSAVSNL----A-DISFSSLHSDLAETERTLILEEFRHTAMKW 79 (185)
Q Consensus 10 ~l~~ll~~l~~-----~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~-~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~ 79 (185)
-++-+++.|++ +...+...+|.++|++-|.+++..+... + .+.++-+..+|+...-...+ .+
T Consensus 73 YliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L----~d---- 144 (569)
T KOG0346|consen 73 YLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL----MD---- 144 (569)
T ss_pred HHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH----cc----
Confidence 34555555543 2455688999999999999988887654 1 36788888888887766443 33
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCC
Q 029910 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACL 110 (185)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~ 110 (185)
.-+|+|+|+.++
T Consensus 145 -------------------~pdIvV~TP~~l 156 (569)
T KOG0346|consen 145 -------------------LPDIVVATPAKL 156 (569)
T ss_pred -------------------CCCeEEeChHHH
Confidence 477999998754
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=41.93 E-value=66 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHc-cCCCCCcEEEEcCChhhHHHHHHHH
Q 029910 7 FQETLVELLHLVVA-GRRPGLPMIVCCSSRDELDAVCSAV 45 (185)
Q Consensus 7 ~~~~l~~ll~~l~~-~~~~~~~~IIF~~~~~~~~~l~~~L 45 (185)
|-..+.+++..+.. ....+++++|.+.++..++.+.+.|
T Consensus 23 KT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 23 KTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34466677776663 1233789999999999999999999
No 296
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.65 E-value=1.6e+02 Score=22.71 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEE-EecCCCHHHHHHHHHHHhcc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~-l~g~~~~~~R~~~l~~F~~~ 75 (185)
.+-+.++++.. ..++.++-++-.+.+.++.+...|+.. +++.+.. .||-+++.+..++++..+..
T Consensus 34 ~dl~~~l~~~~---~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 34 SDLFPDLLRRA---EQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS 100 (172)
T ss_pred HHHHHHHHHHH---HHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc
Confidence 34444555542 233467777778888889999999765 4477774 55768888999999988876
No 297
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=41.51 E-value=95 Score=19.96 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=29.2
Q ss_pred EEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 28 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
.++.|.....+..+.+..... ..+..+.|.....+....+.++..
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~--~~~~~~~G~~~~~~~~~~l~~~~~ 46 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFG--GNVVALGGHLLKKEIIKLLKRLAK 46 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCC--EEEEEEeeeecHHHHHHHHHHHhc
Confidence 467788888888887766422 356666666655666666666544
No 298
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=41.08 E-value=1.2e+02 Score=23.35 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=35.6
Q ss_pred cEEEEcCC-------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 27 PMIVCCSS-------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 27 ~~IIF~~~-------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
+++||+.+ ...+..+...|...+ +....+.=+|+.+.+.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~-V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFR-VKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 46777765 788899999999998 8888888888888787755543
No 299
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=40.83 E-value=2.4e+02 Score=26.30 Aligned_cols=121 Identities=10% Similarity=0.106 Sum_probs=70.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCC-ceEEEEecCCCHHHHHHHH-HHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLIL-EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~l~g~~~~~~R~~~l-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.|.|.+++...-.+.+.+....++. ..+..+.|++.... +.. ++.... ..+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~v~~~~~~~~~--~~a~~~~~~~-----------------------~~dvi 58 (526)
T TIGR02329 4 KPVIWTVSVSRLFDLFRDIAPEFDHRANITPIQLGFEDAV--REIRQRLGAE-----------------------RCDVV 58 (526)
T ss_pred CCEEEEEcHHHHHHHHHHHHHhCCCCceEEEEeccHHHHH--HHHHHHHHhC-----------------------CCcEE
Confidence 6777777766655555555555554 45777777764433 333 223333 37889
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEeeCchHHHHHHHHHHhCCccccc
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIVAEV 177 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~ 177 (185)
|+--..+.++..-+++|-| +++-+.-++++-+-.+.+.++....+-.++-...++.+...++..+...
T Consensus 59 IsrG~ta~~i~~~~~iPVv------~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~ 126 (526)
T TIGR02329 59 VAGGSNGAYLKSRLSLPVI------VIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQR 126 (526)
T ss_pred EECchHHHHHHHhCCCCEE------EecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEE
Confidence 8865544445666777733 4455666777776655333333222223445566778888888776544
No 300
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=39.95 E-value=40 Score=29.91 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.++++++|.+-..+...+..|...|.-.+..+.|++.
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 456899999999888899999999998445888889863
No 301
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=39.58 E-value=59 Score=30.81 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCCh-hhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~-~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+..++.. +. -.+..++||||++. ..+..++..|...|+-++..|+|+++
T Consensus 66 ~~~l~~~l~~-lG-I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~ 118 (610)
T PRK09629 66 TADLEQLFGE-LG-HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL 118 (610)
T ss_pred HHHHHHHHHH-cC-CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH
Confidence 3456666665 23 45678999999865 46678888898888667889999843
No 302
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=39.56 E-value=44 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCCcEEEEcCChhh---------HHHHHHHHhc--CCCceEEEEecCC
Q 029910 24 PGLPMIVCCSSRDE---------LDAVCSAVSN--LADISFSSLHSDL 60 (185)
Q Consensus 24 ~~~~~IIF~~~~~~---------~~~l~~~L~~--~~~~~~~~l~g~~ 60 (185)
...++||||.+-.. +..+.+.|.. .++.++..|.|++
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~ 121 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF 121 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH
Confidence 56899999986654 6677788876 2346899999985
No 303
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=39.50 E-value=1.1e+02 Score=26.84 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=36.5
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 24 PGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 24 ~~~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
+..++||||. .-..+..++..|...| +.+..+.|++..- |...++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G-~~v~~L~GG~~aw-r~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAG-IDVPRLEGGYKAY-RRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcC-CCcEEEcCCHHHH-HHhhHHHHhh
Confidence 5689999995 4566778888998888 6889999997665 4445555543
No 304
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=39.40 E-value=1e+02 Score=19.78 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=29.9
Q ss_pred cEEEEcC-ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHH
Q 029910 27 PMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 27 ~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
++.||+. ++..|.....+|...+ +....++=...+..+.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~g-i~~~~~di~~~~~~~~el~~ 45 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKG-LPYVEINIDIFPERKAELEE 45 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHH
Confidence 4566654 4788889999999888 88888876655555544433
No 305
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=39.19 E-value=56 Score=20.26 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=30.6
Q ss_pred EEEc-CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 29 IVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 29 IIF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.+|. +.+..|..+...|...+ +....+.-+-.++.+.+..+.+...
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~~-i~~~~vdi~~~~~~~~~~~~~~~~~ 49 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSKG-IAFEEIDVEKDSAAREEVLKVLGQR 49 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHCC-CeEEEEeccCCHHHHHHHHHHhCCC
Confidence 3454 45677888888888877 7777776655555555566666544
No 306
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=38.79 E-value=41 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.539 Sum_probs=23.5
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~ 144 (185)
-.+++++++ .||.+|.....|+-++-|+
T Consensus 89 D~vVi~~PM-----------------~Nf~iPa~LK~yiD~i~~a 116 (202)
T COG1182 89 DKVVIAAPM-----------------YNFNIPAQLKAYIDHIAVA 116 (202)
T ss_pred CeEEEEecc-----------------cccCCCHHHHHHHHHHhcC
Confidence 568889998 7999999999998887664
No 307
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=38.01 E-value=1.3e+02 Score=21.10 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCcEEEEcCCh-----hhHHHHHHHHhcCC--CceEEEEecCCC
Q 029910 25 GLPMIVCCSSR-----DELDAVCSAVSNLA--DISFSSLHSDLA 61 (185)
Q Consensus 25 ~~~~IIF~~~~-----~~~~~l~~~L~~~~--~~~~~~l~g~~~ 61 (185)
..++|++|.+. ..+..+...|...| +..+..|.|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 46899999752 23456666666666 235777888763
No 308
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.60 E-value=55 Score=30.97 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=55.8
Q ss_pred HHHHHHHHHc-----cCCCCCcEEEEcCChhhHHHHHHHHhcCCC----ceEEEEecCCCHHHHHHHHHHHhcccccccc
Q 029910 11 LVELLHLVVA-----GRRPGLPMIVCCSSRDELDAVCSAVSNLAD----ISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (185)
Q Consensus 11 l~~ll~~l~~-----~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~----~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~ 81 (185)
++-+++.|.. .+..+.=++|-++|++-|.++++.+...-+ |-..++-|+ +.|..--.+.|.|
T Consensus 192 llPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGG---EkkKSEKARLRKG------ 262 (708)
T KOG0348|consen 192 LLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGG---EKKKSEKARLRKG------ 262 (708)
T ss_pred HHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecc---cccccHHHHHhcC------
Confidence 4445555443 144567789999999999998888766521 222223333 3333344567887
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCC---cccCcCCCCCCcEEEE
Q 029910 82 KVTEQSGDESETGKDEHKSHMIVVTDACLP---LLSSGESAISARVLIN 127 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~---~~~~G~d~~~v~~VI~ 127 (185)
++|||.|+-++- .-...+++..+++||.
T Consensus 263 ------------------iNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 263 ------------------INILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred ------------------ceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999986310 0024667777888774
No 309
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=37.33 E-value=61 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCC
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD 50 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~ 50 (185)
.+.++...-.++..+++|++|..+++.+...|++.|.
T Consensus 177 ~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 177 VLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3333333345679999999999999999999998863
No 310
>PRK10329 glutaredoxin-like protein; Provisional
Probab=37.13 E-value=1.3e+02 Score=20.26 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=30.0
Q ss_pred cEEEEc-CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHH
Q 029910 27 PMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 27 ~~IIF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~ 68 (185)
++.||+ +.+-.|..+...|...| +....+.-+.+++.+...
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~g-I~~~~idi~~~~~~~~~~ 43 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRG-FDFEMINVDRVPEAAETL 43 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCC-CceEEEECCCCHHHHHHH
Confidence 467777 56788888999999888 888888766665554443
No 311
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=36.44 E-value=1.6e+02 Score=28.96 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHH----hcCCCceEEEEecC-----CCHHHHHH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAV----SNLADISFSSLHSD-----LAETERTL 67 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L----~~~~~~~~~~l~g~-----~~~~~R~~ 67 (185)
..++.-++-.++. ...+..++|.++++.-|.+.++++ ...| +++....++ +.+++|..
T Consensus 95 GKTLta~Lpa~l~-aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LG-Lsv~~~~~~s~~~~~~~~~rr~ 161 (762)
T TIGR03714 95 GKTLTATMPLYLN-ALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLG-LTVSLGVVDDPDEEYDANEKRK 161 (762)
T ss_pred chHHHHHHHHHHH-hhcCCceEEeCCCHHHHHHHHHHHHHHHhhcC-CcEEEEECCCCccccCHHHHHH
Confidence 3455555554443 345578999999999998888877 4456 788776654 55555544
No 312
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=36.40 E-value=1.3e+02 Score=26.99 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=46.8
Q ss_pred CCCcEEEE---cCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 24 PGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 24 ~~~~~IIF---~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
.++.+||. +.|-.+....++.|++.| .+.+++.||-++ ....++.+.|.++
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g----------------------- 318 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEG----------------------- 318 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccC-----------------------
Confidence 45567665 467788888899998875 367888899888 7777777778777
Q ss_pred ceeEEEEecC
Q 029910 99 KSHMIVVTDA 108 (185)
Q Consensus 99 ~~~iLV~Td~ 108 (185)
.++-+|+||.
T Consensus 319 ~i~~iv~TdT 328 (382)
T PRK06827 319 YFDRIIGTNL 328 (382)
T ss_pred CCCEEEEeCC
Confidence 5888889987
No 313
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=36.09 E-value=1e+02 Score=30.98 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=40.3
Q ss_pred cEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccc
Q 029910 27 PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 76 (185)
Q Consensus 27 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~ 76 (185)
=+||-.+=..-++.....|...+ |.+..|+++++..+|..+++.++.+.
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~-I~a~~L~s~q~~~~~~~i~q~l~~~~ 354 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKG-IPACFLSSIQTAAERLAILQKLANGN 354 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcC-cceeeccccccHHHHHHHHHHHhCCC
Confidence 45555666666777777776776 99999999999999999999999983
No 314
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=34.99 E-value=1.4e+02 Score=30.08 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=50.9
Q ss_pred CCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC----CC-------CEEEEEeeC-chHHHHH
Q 029910 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA----AD-------GSVINIVVG-GEVVTLR 164 (185)
Q Consensus 97 ~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~----~~-------g~~i~~v~~-~e~~~~~ 164 (185)
..+.+.+++-.+ +.+|-|.|.+=++.-+.-..|...-.|-+||..+ +. .+.++++.. ....+..
T Consensus 499 ~~~~~fifs~~a----l~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~ 574 (986)
T PRK15483 499 WNTRRFLFSKWT----LREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFAS 574 (986)
T ss_pred CCCeEEEEEhHH----hhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHH
Confidence 346899999999 9999999999888888888888888999999521 11 234444443 4555556
Q ss_pred HHHHHh
Q 029910 165 SMEESL 170 (185)
Q Consensus 165 ~l~~~~ 170 (185)
.|++.+
T Consensus 575 ~LQ~EI 580 (986)
T PRK15483 575 KLVGEI 580 (986)
T ss_pred HHHHHH
Confidence 665554
No 315
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.71 E-value=2.8e+02 Score=23.40 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEe-cCCCHHHHHHHHHHHhcc
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH-SDLAETERTLILEEFRHT 75 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~-g~~~~~~R~~~l~~F~~~ 75 (185)
++++-.+-.+...+++.+..|... ++.++...| |-.++++...++++-...
T Consensus 108 ~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s 160 (253)
T COG1922 108 GKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAAS 160 (253)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhc
Confidence 467777777788888888888765 336666666 888888888888888776
No 316
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.57 E-value=1.5e+02 Score=27.29 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
..++.++..|......+.+++|-.+|++-+.+..+.++..| +...+.+.|+-+.+++...+. .
T Consensus 74 af~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~---~----------- 139 (529)
T KOG0337|consen 74 AFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN---E----------- 139 (529)
T ss_pred hHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc---c-----------
Confidence 34555666655444567899999999999998888887764 245665666655555443321 1
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCC--cccCcCCCCCCcEEEE
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLIN 127 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~--~~~~G~d~~~v~~VI~ 127 (185)
.-++++||+-+.- .+..-+++..|.+||.
T Consensus 140 -------------npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 140 -------------NPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred -------------CCCEEEecCceeeeeehheeccccceeeeee
Confidence 2568888875210 0244577889999885
No 317
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=33.34 E-value=1.1e+02 Score=26.10 Aligned_cols=48 Identities=2% Similarity=-0.126 Sum_probs=31.5
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.--+|+|...++...|-+.+.-.. +...+|---..+....+++....|
T Consensus 25 ~~d~i~~EDTR~t~kLL~~~~I~~--~~~~~~~hn~~~~~~~l~~~l~~g 72 (276)
T TIGR00096 25 CVDLFAEEDTRTSKLLLHLGIIAT--PKAFHIDNEFQEKQNLLAAKLEIG 72 (276)
T ss_pred hCCEEEecCchhHHHHHHhcCCCC--ceEEEecccHhHHHHHHHHHHHcC
Confidence 455899998888888888775432 355666544445555566667666
No 318
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=33.23 E-value=1.1e+02 Score=24.74 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCc-
Q 029910 38 LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG- 116 (185)
Q Consensus 38 ~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G- 116 (185)
.+..-+.+....++.-+.+||..--+-+..+-+....| .++++-.|.. .++-
T Consensus 56 ~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~~~~~G------------------------~~vildId~q---Ga~qv 108 (191)
T COG0194 56 EEEFEELIERDEFLEWAEYHGNYYGTSREPVEQALAEG------------------------KDVILDIDVQ---GALQV 108 (191)
T ss_pred HHHHHHHHhcCCcEEEEEEcCCcccCcHHHHHHHHhcC------------------------CeEEEEEehH---HHHHH
Confidence 34555566655667888889887777777888888887 6677777751 1221
Q ss_pred -CCCCCCcEEEEcCCCCCHHHHHHHH-hh
Q 029910 117 -ESAISARVLINYELPTKKETYIRRM-TT 143 (185)
Q Consensus 117 -~d~~~v~~VI~~d~P~~~~~yiqR~-GR 143 (185)
-..| +.|..|-.|.|.+.+..|. ||
T Consensus 109 k~~~p--~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 109 KKKMP--NAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred HHhCC--CeEEEEEcCCCHHHHHHHHHcc
Confidence 1344 7899999999999999997 54
No 319
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=32.98 E-value=1.9e+02 Score=23.29 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=30.5
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEE--EecCC-CHHHHHHHHHHHhcc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSS--LHSDL-AETERTLILEEFRHT 75 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~--l~g~~-~~~~R~~~l~~F~~~ 75 (185)
.+++++++++.... -+.|.+.|+..| +.+.. ++... .........+.++.+
T Consensus 116 ~~~~~vL~~rg~~~-r~~l~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~l~~~ 169 (240)
T PRK09189 116 APTARLLYLAGRPR-APVFEDRLAAAG-IPFRVAECYDMLPVMYSPATLSAILGGA 169 (240)
T ss_pred CCCCcEEEeccCcc-cchhHHHHHhCC-CeeEEEEEEEeecCCCChHHHHHHHhcC
Confidence 35678888886654 488999999887 44433 33222 222233455666666
No 320
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=32.59 E-value=1.4e+02 Score=24.78 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEc-CChhhHHHHHHHHhcCCCceEEEEecC
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
|.+.|..+|.. .....+.|||+ ++.+....+.+.+...+ +....+|-.
T Consensus 163 KG~~L~~fL~~----~~~~pk~IIfIDD~~~nl~sv~~a~k~~~-I~f~G~~Yt 211 (252)
T PF11019_consen 163 KGEVLKYFLDK----INQSPKKIIFIDDNKENLKSVEKACKKSG-IDFIGFHYT 211 (252)
T ss_pred cHHHHHHHHHH----cCCCCCeEEEEeCCHHHHHHHHHHHhhCC-CcEEEEEEc
Confidence 44555555554 34445567776 56788889999999877 898888854
No 321
>PRK07411 hypothetical protein; Validated
Probab=32.14 E-value=65 Score=28.63 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=31.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
+.+++|+||.+-..+...+..|...| ++...+.|++..
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G-~~~~~l~GG~~~ 378 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAG-IEGTNVKGGITA 378 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcC-CCeEEecchHHH
Confidence 45799999999999999999999998 576678887543
No 322
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=31.99 E-value=84 Score=29.09 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=39.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.=+|||.+--.-...=...|...- +.+..|++.|+..+|.+++.+...-
T Consensus 62 gITIV~SPLiALIkDQiDHL~~LK-Vp~~SLNSKlSt~ER~ri~~DL~~e 110 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHLKRLK-VPCESLNSKLSTVERSRIMGDLAKE 110 (641)
T ss_pred CeEEEehHHHHHHHHHHHHHHhcC-CchhHhcchhhHHHHHHHHHHHHhc
Confidence 467888776666555556666665 8999999999999999999998764
No 323
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=31.82 E-value=93 Score=21.88 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCCcEEEEcC-Chh----hHHHHHHHHhc----CCCceEEEEecCCCH
Q 029910 24 PGLPMIVCCS-SRD----ELDAVCSAVSN----LADISFSSLHSDLAE 62 (185)
Q Consensus 24 ~~~~~IIF~~-~~~----~~~~l~~~L~~----~~~~~~~~l~g~~~~ 62 (185)
...++|+||+ +.. .+..+.+.|.. .|+.++..+.|++..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~ 108 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNA 108 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHH
Confidence 4478999997 322 23344443432 365679999998643
No 324
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=31.55 E-value=1.5e+02 Score=23.41 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=35.2
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEe--cCCCHHHHHHHHHHHhcc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLH--SDLAETERTLILEEFRHT 75 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~--g~~~~~~R~~~l~~F~~~ 75 (185)
...++++++++.... -..|.+.|+..| +.+..+. ...+...+.+..+.|..+
T Consensus 114 ~~~~~~vl~~~g~~~-~~~l~~~L~~~g-~~v~~~~vY~~~~~~~~~~~~~~l~~~ 167 (231)
T PF02602_consen 114 QLRGKRVLILRGEGG-RPDLPEKLREAG-IEVTEVIVYETPPEELSPELKEALDRG 167 (231)
T ss_dssp CCTTEEEEEEESSSS-CHHHHHHHHHTT-EEEEEEECEEEEEHHHHHHHHHHHHHT
T ss_pred hCCCCeEEEEcCCCc-cHHHHHHHHHCC-CeEEEEEEeecccccchHHHHHHHHcC
Confidence 445577877776544 577889998887 4443333 225577788888889887
No 325
>PRK01172 ski2-like helicase; Provisional
Probab=31.54 E-value=1.2e+02 Score=28.69 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAE 62 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~ 62 (185)
+.++|+.++++.-|.+.++.+.. .| +.+..++|+.+.
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~ 104 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLG-MRVKISIGDYDD 104 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCC
Confidence 46888888998888887776653 35 677778887654
No 326
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=31.34 E-value=1.8e+02 Score=28.49 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHH----HHHHHhcCCCceEEEEecCCCHHHHHHHHH
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDA----VCSAVSNLADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~----l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
+..++...+...+. -..++++-|.+.+..-|.. ....+...| +++..+.++++..+|.++.+
T Consensus 102 EGKTLvA~l~a~l~-AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LG-Lsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 102 EGKTLAGAIAAAGY-ALQGRRVHVITVNDYLARRDAEWMGPLYEALG-LTVGWITEESTPEERRAAYA 167 (764)
T ss_pred CCHHHHHHHHHHHH-HHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCCCHHHHHHHHc
Confidence 34556666655444 4667899999988655554 444455567 89999999999999988764
No 327
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=30.91 E-value=4e+02 Score=24.06 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=7.4
Q ss_pred HHHHHHHHhhh
Q 029910 134 KETYIRRMTTC 144 (185)
Q Consensus 134 ~~~yiqR~GR~ 144 (185)
....+.|+|+.
T Consensus 270 l~~L~ERag~~ 280 (418)
T TIGR03498 270 LPRLLERAGPG 280 (418)
T ss_pred hhHHHHHhccC
Confidence 45667788874
No 328
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=30.87 E-value=2.6e+02 Score=21.93 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCC--------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSS--------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~--------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+.+.+.++.+.+ .....+++|+.|+ ...|+.+.+.| | +.+. .|+...+....++++-|+..
T Consensus 62 ~~~~~~~~~l~~-~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---g-Ipvl-~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 62 PEYAEWLNELKK-QFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---G-IPVL-RHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHHHH-HCCCCeEEEEECCCCcccCccHHHHHHHHHhh---C-CcEE-EeCCCCCccHHHHHHHHhhc
Confidence 344555555433 3333579999997 45566666666 3 5544 45554557777888888753
No 329
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=30.85 E-value=72 Score=28.65 Aligned_cols=58 Identities=5% Similarity=-0.051 Sum_probs=46.0
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh-cCCCCEEEEEeeCchH
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-LAADGSVINIVVGGEV 160 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~-~~~~g~~i~~v~~~e~ 160 (185)
...+..|+.- ..++.|...+..+.++-...++..+.+++.|. ....+.-+.+.+.-+.
T Consensus 122 ~~~v~~~igg----~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 122 DVSVHACIGG----TNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred ceeeeeecCc----ccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 5778888888 88888888888888888889999999999765 6677777777766444
No 330
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=30.64 E-value=1.1e+02 Score=30.54 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=51.7
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC----CCCE-----------EEEEeeCchHHHH
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA----ADGS-----------VINIVVGGEVVTL 163 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~----~~g~-----------~i~~v~~~e~~~~ 163 (185)
+.+.+.+--+ +.+|-|-|.|=.+.-.....|..+=.|.+||+.+ ..|. -..++...+..+.
T Consensus 483 plRFIFS~wa----LrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv 558 (985)
T COG3587 483 PLRFIFSKWA----LREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFV 558 (985)
T ss_pred cceeeeehhH----HhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHH
Confidence 3889999999 9999999999999999999999999999999622 2231 1224455566666
Q ss_pred HHHHHHhC
Q 029910 164 RSMEESLG 171 (185)
Q Consensus 164 ~~l~~~~~ 171 (185)
..+++.+.
T Consensus 559 ~~LqkEI~ 566 (985)
T COG3587 559 KALQKEIN 566 (985)
T ss_pred HHHHHHHH
Confidence 66666543
No 331
>PHA03371 circ protein; Provisional
Probab=30.42 E-value=43 Score=27.89 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=22.9
Q ss_pred ccCcCCCCCCcEE-EEcCCCC-------------CHHHHHHHHhhh
Q 029910 113 LSSGESAISARVL-INYELPT-------------KKETYIRRMTTC 144 (185)
Q Consensus 113 ~~~G~d~~~v~~V-I~~d~P~-------------~~~~yiqR~GR~ 144 (185)
+.|-+|+|.=+-+ |..|.+. +--.|+|.|||+
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRA 75 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRA 75 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehh
Confidence 5677788887776 6444433 556789999997
No 332
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=29.93 E-value=1.2e+02 Score=23.54 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 48 (185)
+.+.++.|+++.+. .+.+++|.|.+.+.++.|=+.|=..
T Consensus 14 ~~~~acrL~~Ka~~---~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 14 LLKSILLLIEKCYY---SDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred HHHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 34566677776544 5789999999999999998888444
No 333
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=29.19 E-value=3.7e+02 Score=23.01 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=27.5
Q ss_pred EEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 30 VCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 30 IF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
|..+....+....+.|-+.|+-+++++.|........+-++.|+..
T Consensus 155 V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a 200 (333)
T COG1609 155 VGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAA 200 (333)
T ss_pred EEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHH
Confidence 4445666777788888887755688888764222222224455543
No 334
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=28.54 E-value=2.7e+02 Score=27.93 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 67 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~ 67 (185)
..++.-.+-.++. -..+..+.|-+.+..-|...++++.. .| +++.++.++++..+|.+
T Consensus 107 GKTL~a~lp~~l~-al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lG-lsv~~i~~~~~~~~r~~ 168 (908)
T PRK13107 107 GKTLTATLPAYLN-ALTGKGVHVITVNDYLARRDAENNRPLFEFLG-LTVGINVAGLGQQEKKA 168 (908)
T ss_pred CchHHHHHHHHHH-HhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHh
Confidence 3455555554444 34567799999999888877777653 46 89999999999876654
No 335
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=28.45 E-value=3.3e+02 Score=25.04 Aligned_cols=67 Identities=4% Similarity=-0.175 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhh-----------HHHHHHHHhc-CCCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~-----------~~~l~~~L~~-~~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
..+...++++.+.. ..-.++++|+++|-+. +-.++++++. .| ..++.+--+++...+..-.-....
T Consensus 184 R~rEv~efi~~~~~-~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G-~~VLll~DslTR~A~A~REisl~~ 261 (463)
T PRK09280 184 RTREGNDLYHEMKE-SGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEG-QDVLLFIDNIFRFTQAGSEVSALL 261 (463)
T ss_pred CcHHHHHHHHHHHh-cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC-CceEEEecchHHHHHHHHHHHHhc
Confidence 34556677777655 5556788999887544 5678899988 87 688888888877776654444444
Q ss_pred c
Q 029910 75 T 75 (185)
Q Consensus 75 ~ 75 (185)
|
T Consensus 262 g 262 (463)
T PRK09280 262 G 262 (463)
T ss_pred C
Confidence 4
No 336
>PTZ00062 glutaredoxin; Provisional
Probab=28.22 E-value=3.2e+02 Score=22.07 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEcC------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
+.+.++.+++ ..|++||.. ++.-|..+...|++.+ +....+.=....+.|.. +.++
T Consensus 102 ~~~~v~~li~----~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~-i~y~~~DI~~d~~~~~~-l~~~ 163 (204)
T PTZ00062 102 TVEKIERLIR----NHKILLFMKGSKTFPFCRFSNAVVNMLNSSG-VKYETYNIFEDPDLREE-LKVY 163 (204)
T ss_pred HHHHHHHHHh----cCCEEEEEccCCCCCCChhHHHHHHHHHHcC-CCEEEEEcCCCHHHHHH-HHHH
Confidence 4444555443 389999977 5778889999999887 77777765555544443 4444
No 337
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=28.03 E-value=1.7e+02 Score=18.88 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=27.5
Q ss_pred EEc-CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHH
Q 029910 30 VCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 30 IF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l 69 (185)
||. +++..|....+.|...+ +....++-+.++..+.+..
T Consensus 3 ly~~~~Cp~C~~a~~~L~~~~-i~~~~~di~~~~~~~~~~~ 42 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSSKG-VTFTEIRVDGDPALRDEMM 42 (79)
T ss_pred EEecCCChhHHHHHHHHHHcC-CCcEEEEecCCHHHHHHHH
Confidence 444 56677888888888887 7888887777666555543
No 338
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=27.83 E-value=2.3e+02 Score=24.12 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhh-----------HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~-----------~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.+...++++.+.. .....+++||+++-+. +-.++++++..| ..++.+--+++...+....-...-+
T Consensus 109 ~~ev~e~~~~~~~-~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G-~~Vlvl~DslTr~A~A~rEisl~~g 185 (274)
T cd01132 109 ASTVAQVVKTLEE-HGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNG-KHALIIYDDLSKQAVAYRQMSLLLR 185 (274)
T ss_pred hHHHHHHHHHHHh-cCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCC-CCEEEEEcChHHHHHHHHHHHHhcC
Confidence 4556677777554 4455777888876443 557788888887 5888888887777665443333333
No 339
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=27.54 E-value=2.8e+02 Score=23.51 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHh
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 73 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~ 73 (185)
.+..+|+...+++..+.|++.|.....+.+..+--|++..+....+.+.-
T Consensus 29 ~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 29 RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHH
Confidence 45789999999999999999998764588999999988777766666543
No 340
>PRK09271 flavodoxin; Provisional
Probab=27.51 E-value=2.7e+02 Score=21.02 Aligned_cols=28 Identities=4% Similarity=0.113 Sum_probs=18.5
Q ss_pred EEEEc----CChhhHHHHHHHHhcCCCceEEEE
Q 029910 28 MIVCC----SSRDELDAVCSAVSNLADISFSSL 56 (185)
Q Consensus 28 ~IIF~----~~~~~~~~l~~~L~~~~~~~~~~l 56 (185)
+|||. ||.+.|+.+++.|...| +.+...
T Consensus 4 ~IvY~S~tGnTe~~A~~ia~~l~~~g-~~v~~~ 35 (160)
T PRK09271 4 LLAYASLSGNTREVAREIEERCEEAG-HEVDWV 35 (160)
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCC-CeeEEE
Confidence 56665 46677777788887777 555443
No 341
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=27.28 E-value=4.9e+02 Score=23.86 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=6.8
Q ss_pred HHHHHHHHhhh
Q 029910 134 KETYIRRMTTC 144 (185)
Q Consensus 134 ~~~yiqR~GR~ 144 (185)
......|+|+.
T Consensus 292 l~~L~ERAg~~ 302 (444)
T PRK08972 292 LPALVERAGNG 302 (444)
T ss_pred hHHHHHHhcCC
Confidence 44566677764
No 342
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=27.13 E-value=3.3e+02 Score=21.85 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=29.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 66 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~ 66 (185)
-+++-||++. ..+.+.+.+...+ +.++=|||+-+++.-.
T Consensus 53 ~~~VgVf~~~--~~~~i~~~~~~~~-~d~vQLHG~e~~~~~~ 91 (207)
T PRK13958 53 IDKVCVVVNP--DLTTIEHILSNTS-INTIQLHGTESIDFIQ 91 (207)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhCC-CCEEEECCCCCHHHHH
Confidence 3679999865 5566777777777 7899999998866533
No 343
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=27.12 E-value=3.8e+02 Score=22.68 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=43.5
Q ss_pred eEecchHHHHHHHH-HHHc-cCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHh
Q 029910 3 VSFTFQETLVELLH-LVVA-GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 73 (185)
Q Consensus 3 v~~~~~~~l~~ll~-~l~~-~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~ 73 (185)
++|.+......-+. .|.+ +-.++..++|+++.....-...-.+...| ..+..++...+..+...++++-+
T Consensus 22 ~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G-~~~v~l~~~~~~~~~~~~l~~~~ 93 (417)
T PF00501_consen 22 LTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAG-AIPVPLDPSLSEDELRHILRQSG 93 (417)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT--EEEEEETTSSHHHHHHHHHHHT
T ss_pred EEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccc-ccccccccccccccccccccccc
Confidence 45555444444333 3222 23556789999987654444444445566 78999999999988777776653
No 344
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=26.94 E-value=1.2e+02 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCceEEEEecC-----------CCHHHHHHHHHHHhcc
Q 029910 37 ELDAVCSAVSNLADISFSSLHSD-----------LAETERTLILEEFRHT 75 (185)
Q Consensus 37 ~~~~l~~~L~~~~~~~~~~l~g~-----------~~~~~R~~~l~~F~~~ 75 (185)
-|..|.+.|...| ..+..|.|+ .+.++|.+.++++..-
T Consensus 18 lA~~L~~~L~~~g-~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~ 66 (156)
T PF01583_consen 18 LARALERRLFARG-IKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEV 66 (156)
T ss_dssp HHHHHHHHHHHTT-S-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 4568888888888 899999874 5789999988876553
No 345
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=26.49 E-value=4.8e+02 Score=23.99 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=8.1
Q ss_pred HHHHHHHHhhh
Q 029910 134 KETYIRRMTTC 144 (185)
Q Consensus 134 ~~~yiqR~GR~ 144 (185)
......|+|+.
T Consensus 305 l~~l~ERag~~ 315 (455)
T PRK07960 305 LPALVERAGNG 315 (455)
T ss_pred hhHHHHHHhcC
Confidence 45677889985
No 346
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=26.48 E-value=2.3e+02 Score=26.33 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhh-----------HHHHHHHHhcCCCceEEEEecCCCHHHHHH
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSNLADISFSSLHSDLAETERTL 67 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~-----------~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~ 67 (185)
+.+...++++.+.. ...-.+++|+++|-+. +-.++++++..| -.++.+--+++...+..
T Consensus 201 r~~ev~e~~~~~~~-~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G-~~VLli~DdlTr~A~A~ 270 (502)
T PRK09281 201 KASTVAQVVRKLEE-HGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNG-KDALIVYDDLSKQAVAY 270 (502)
T ss_pred ChHHHHHHHHHHhh-cCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecCchHHHHHH
Confidence 45666778887655 5556889999988655 677889998887 68999888887776654
No 347
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.45 E-value=1.6e+02 Score=27.15 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=35.1
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHh---cCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVS---NLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~---~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+.++..++|+..|++-+..+--... ..| .+..++.|+-+..++ +++.+.|
T Consensus 291 qr~~p~~lvl~ptreLalqie~e~~kysyng-~ksvc~ygggnR~eq---ie~lkrg 343 (629)
T KOG0336|consen 291 QRNGPGVLVLTPTRELALQIEGEVKKYSYNG-LKSVCVYGGGNRNEQ---IEDLKRG 343 (629)
T ss_pred ccCCCceEEEeccHHHHHHHHhHHhHhhhcC-cceEEEecCCCchhH---HHHHhcC
Confidence 4556789999999987776544332 235 789999998665555 5666776
No 348
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=25.99 E-value=69 Score=27.81 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=40.8
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccc
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKW 79 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~ 79 (185)
...++|++.||.---.|+..+.+|...|+-.+.-|+|+.-.. +++.....++|
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y-----~e~~~~~g~lw 221 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKY-----LEDVGTEGSLW 221 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHH-----hhhcCccCcee
Confidence 445689999999999999999999999987899999985333 34444443455
No 349
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=25.84 E-value=2e+02 Score=28.40 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChh----hHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRD----ELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~----~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
..++...+...+. -..+.++-|.+.+.. .++.+...+...| +++..+.+++++++|.+...
T Consensus 105 GKTLvA~l~a~l~-al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LG-l~vg~i~~~~~~~~r~~~y~ 169 (796)
T PRK12906 105 GKTLTATLPVYLN-ALTGKGVHVVTVNEYLSSRDATEMGELYRWLG-LTVGLNLNSMSPDEKRAAYN 169 (796)
T ss_pred CCcHHHHHHHHHH-HHcCCCeEEEeccHHHHHhhHHHHHHHHHhcC-CeEEEeCCCCCHHHHHHHhc
Confidence 3455555555444 456788888888754 4556666777778 99999999999999987654
No 350
>PRK06756 flavodoxin; Provisional
Probab=25.56 E-value=2.8e+02 Score=20.44 Aligned_cols=29 Identities=3% Similarity=0.237 Sum_probs=18.0
Q ss_pred EEEEc----CChhhHHHHHHHHhcCCCceEEEEe
Q 029910 28 MIVCC----SSRDELDAVCSAVSNLADISFSSLH 57 (185)
Q Consensus 28 ~IIF~----~~~~~~~~l~~~L~~~~~~~~~~l~ 57 (185)
+|||. ||++.|+.+++.|...| +.+...+
T Consensus 5 ~IiY~S~tGnTe~vA~~ia~~l~~~g-~~v~~~~ 37 (148)
T PRK06756 5 VMIFASMSGNTEEMADHIAGVIRETE-NEIEVID 37 (148)
T ss_pred EEEEECCCchHHHHHHHHHHHHhhcC-CeEEEee
Confidence 56665 45666777777777666 5655444
No 351
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=25.35 E-value=2.4e+02 Score=28.92 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=68.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
+..|+|--++.++-|.+.......+ | +++..|+|++....-. +. .
T Consensus 163 ~~fKiVYIaPmKALa~Em~~~~~kkl~~~g-i~v~ELTGD~ql~~te-i~-----------------------------~ 211 (1230)
T KOG0952|consen 163 DDFKIVYIAPMKALAAEMVDKFSKKLAPLG-ISVRELTGDTQLTKTE-IA-----------------------------D 211 (1230)
T ss_pred CCceEEEEechHHHHHHHHHHHhhhccccc-ceEEEecCcchhhHHH-HH-----------------------------h
Confidence 4567777778888888777666543 5 9999999998765544 21 4
Q ss_pred eeEEEEecCCCCcccCcCC-----CCCCcEEEEcCCC-------CCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHH
Q 029910 100 SHMIVVTDACLPLLSSGES-----AISARVLINYELP-------TKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d-----~~~v~~VI~~d~P-------~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~ 165 (185)
.+|||+|+----.+.|--. +..|.+||.=++. ..+++.+-|.=|- ......=|.-++ -....+.+
T Consensus 212 tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLS-ATlPN~eD 290 (1230)
T KOG0952|consen 212 TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLS-ATLPNYED 290 (1230)
T ss_pred cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEee-ccCCCHHH
Confidence 7889998641111443221 3456666654332 2578888888775 233332222222 23444455
Q ss_pred HHHHhCC
Q 029910 166 MEESLGL 172 (185)
Q Consensus 166 l~~~~~~ 172 (185)
+.++++.
T Consensus 291 vA~fL~v 297 (1230)
T KOG0952|consen 291 VARFLRV 297 (1230)
T ss_pred HHHHhcC
Confidence 5555554
No 352
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=25.24 E-value=1.3e+02 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCce--EEEEecCCC
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADIS--FSSLHSDLA 61 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~--~~~l~g~~~ 61 (185)
.++||+|.+-..+...++.|.+.| +. +..+.|++.
T Consensus 333 ~~Ivv~C~sG~RS~~Aa~~L~~~G-~~~~v~~l~GG~~ 369 (370)
T PRK05600 333 DNVVVYCASGIRSADFIEKYSHLG-HELTLHNLPGGVN 369 (370)
T ss_pred CcEEEECCCChhHHHHHHHHHHcC-CCCceEEeccccC
Confidence 489999999988889999999988 44 677888864
No 353
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=25.24 E-value=3.3e+02 Score=25.34 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=55.8
Q ss_pred EcCChhhHHHHHHHHhcCC------CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 31 CCSSRDELDAVCSAVSNLA------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 31 F~~~~~~~~~l~~~L~~~~------~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
|.+.++..+...++..... +..+..|.|+ .+++-++.+|-.. ..++||
T Consensus 371 ~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGG---NQQKVvlarwL~~-----------------------~p~vLi 424 (500)
T COG1129 371 LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGG---NQQKVVLARWLAT-----------------------DPKVLI 424 (500)
T ss_pred ccChHHHHHHHHHHHHhcCcccCCccchhhcCCch---hhhhHHHHHHHhc-----------------------CCCEEE
Confidence 5555555444444444432 1345566666 6667778888876 578888
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEeeCch
Q 029910 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGE 159 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v~~~e 159 (185)
.-+ -.||+|+. ...-++++=|.....|.+|.+++++-
T Consensus 425 lDE-----PTRGIDVG-------------AK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 425 LDE-----PTRGIDVG-------------AKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred ECC-----CCcCcccc-------------hHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 877 58999986 34556666566666788898888743
No 354
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=24.91 E-value=5.4e+02 Score=23.58 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=10.0
Q ss_pred CHHHHHHHHhhhcCCCC
Q 029910 133 KKETYIRRMTTCLAADG 149 (185)
Q Consensus 133 ~~~~yiqR~GR~~~~~g 149 (185)
.....+-|+|+..+..|
T Consensus 277 ~l~~LlERaG~~~~~~G 293 (458)
T TIGR01041 277 DLATIYERAGRVKGKKG 293 (458)
T ss_pred HhHHHHHhcccCCCCCc
Confidence 34566678887643344
No 355
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=24.52 E-value=3.2e+02 Score=20.83 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=23.3
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~ 144 (185)
-.++++|+. .|+.+|.....++.|++..
T Consensus 67 D~iI~~sP~-----------------Y~~sip~~LK~~iD~~~~~ 94 (171)
T TIGR03567 67 DGVVVATPV-----------------YKASYSGVLKALLDLLPQR 94 (171)
T ss_pred CEEEEECCc-----------------ccCCCCHHHHHHHHhCChh
Confidence 447888887 6889999999999999753
No 356
>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed
Probab=23.91 E-value=1.6e+02 Score=22.07 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEE
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSS 55 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~ 55 (185)
+.+.+++..|-.+....++.+++.+.-+....+...|.+.|++.-..
T Consensus 5 d~iad~lt~IrNa~~a~~~~v~~~p~Sk~~~~il~iL~~eGyI~~~~ 51 (130)
T PRK04034 5 DPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFE 51 (130)
T ss_pred cHHHHHHHHhHhHHHcCCceEEEEcccHHHHHHHHHHHHCCCceEEE
Confidence 56778888876656666777778888888999999999999766544
No 357
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=23.82 E-value=98 Score=24.70 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=40.3
Q ss_pred cCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHH
Q 029910 58 SDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETY 137 (185)
Q Consensus 58 g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~y 137 (185)
=+++...-...+..|.+.+-.||.. .++|||.|.- +. ..++|.+...-
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~Nkt----------------AiPilvGTKy--------------D~--fi~lp~e~Q~~ 147 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKT----------------AIPILVGTKY--------------DL--FIDLPPELQET 147 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCc----------------cceEEeccch--------------Hh--hhcCCHHHHHH
Confidence 3566666666777777765555555 6778888864 11 13567666666
Q ss_pred HHHHhhhc-CCCCEEEEEeeC
Q 029910 138 IRRMTTCL-AADGSVINIVVG 157 (185)
Q Consensus 138 iqR~GR~~-~~~g~~i~~v~~ 157 (185)
+-|-.|+. ..-...+.|++.
T Consensus 148 I~~qar~YAk~mnAsL~F~St 168 (205)
T KOG1673|consen 148 ISRQARKYAKVMNASLFFCST 168 (205)
T ss_pred HHHHHHHHHHHhCCcEEEeec
Confidence 66666652 222344556543
No 358
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=23.31 E-value=4.7e+02 Score=22.25 Aligned_cols=67 Identities=3% Similarity=-0.182 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChh-----------hHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRD-----------ELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~-----------~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
..+...++++.+.. ..-..+++|++++-+ .+-.++++|+.. | ..++.+--+++...+....-....
T Consensus 109 r~~Ev~e~~~~~~~-~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g-~~Vl~~~Dsltr~a~A~reis~~~ 186 (274)
T cd01133 109 RTREGNDLYHEMKE-SGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEG-QDVLLFIDNIFRFTQAGSEVSALL 186 (274)
T ss_pred CcHHHHHHHHHHHh-cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEEeChhHHHHHHHHHHHHc
Confidence 34566677777555 455578888887643 345678888877 7 689999888888888766666666
Q ss_pred c
Q 029910 75 T 75 (185)
Q Consensus 75 ~ 75 (185)
|
T Consensus 187 g 187 (274)
T cd01133 187 G 187 (274)
T ss_pred C
Confidence 5
No 359
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=22.47 E-value=2.8e+02 Score=25.76 Aligned_cols=59 Identities=8% Similarity=0.065 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhh-----------HHHHHHHHhcCCCceEEEEecCCCHHHHHH
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSNLADISFSSLHSDLAETERTL 67 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~-----------~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~ 67 (185)
+.....++++.+.. ...-.+++|++++-+. +-.++++++..| -.++.+--+++...+..
T Consensus 201 R~rev~e~i~~l~~-~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G-~~VLlv~DdlTr~A~A~ 270 (497)
T TIGR03324 201 RASAVAKVVANLRE-HGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQG-RDVLIVYDDLTQHARAY 270 (497)
T ss_pred CcHHHHHHHHHhhh-cCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcChhHHHHHH
Confidence 45667778888655 5566788888887544 557888998888 68999988887776654
No 360
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=22.43 E-value=2.1e+02 Score=23.54 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=27.0
Q ss_pred CCcEEEEcC-----ChhhHHHHHHHHhcCCCceEEEEecC
Q 029910 25 GLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 25 ~~~~IIF~~-----~~~~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
.++++|||| |.++...+.+...... +++..+-..
T Consensus 162 ~kki~ifvNl~~YLt~eei~el~~~i~~~~-~~vlliE~~ 200 (216)
T TIGR01866 162 KKKLFIFINSGAFLTKDELAELQKFISYTK-LTVLFLEPR 200 (216)
T ss_pred cCcEEEEEcHHHhCCHHHHHHHHHHHHHhc-ccEEEEecc
Confidence 399999999 6678888888887765 788887654
No 361
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=22.34 E-value=6.5e+02 Score=23.55 Aligned_cols=122 Identities=8% Similarity=0.057 Sum_probs=68.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEE--EecCCCHHHHHHHH-HHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSS--LHSDLAETERTLIL-EEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~--l~g~~~~~~R~~~l-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
+..|.|..++...-.+.........+ ..+.. +.++ .++-.+.. ++...+ ..
T Consensus 12 ~~~p~~~~~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~-----------------------~~ 65 (538)
T PRK15424 12 DDKPVIWTVSVSRLFELFRDISLEFD-HLANITPIQLG--FEKAVTYIRKRLATE-----------------------RC 65 (538)
T ss_pred CCCCeEEEeeHHHHHHHHHHHHHhcC-CCceEEehhhh--HHHHHHHHHHHHhhC-----------------------CC
Confidence 34777777765554444444455554 23333 3444 44444445 334443 47
Q ss_pred eEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEeeCchHHHHHHHHHHhCCccccc
Q 029910 101 HMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIVAEV 177 (185)
Q Consensus 101 ~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~ 177 (185)
+++|+--..+.++..-+++|-| +++-+.-++++-+-++.+..+..-.+-.++-...++.+...++..+...
T Consensus 66 dviIsrG~ta~~i~~~~~iPVv------~i~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~ 136 (538)
T PRK15424 66 DAIIAAGSNGAYLKSRLSVPVI------LIKPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQR 136 (538)
T ss_pred cEEEECchHHHHHHhhCCCCEE------EecCCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEE
Confidence 8999865433345666777744 4455666777777665333333222223445667778888888776544
No 362
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=21.98 E-value=80 Score=31.16 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHccC-CCC--CcEEEEc-CChh----hHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccc
Q 029910 9 ETLVELLHLVVAGR-RPG--LPMIVCC-SSRD----ELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (185)
Q Consensus 9 ~~l~~ll~~l~~~~-~~~--~~~IIF~-~~~~----~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~ 80 (185)
..++-.+..|++.. .+. +=..+|. +=+. .-..|-..++..| +++..-||+.++.+|.+.. ..
T Consensus 53 AAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G-~~v~vRhGDT~~~er~r~~----~~----- 122 (814)
T COG1201 53 AAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG-IEVAVRHGDTPQSEKQKML----KN----- 122 (814)
T ss_pred HHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-CccceecCCCChHHhhhcc----CC-----
Confidence 34555666666621 111 1223443 3333 3334445555667 8999999999999997432 22
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCcccCc----CCCCCCcEEEEcCCC
Q 029910 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG----ESAISARVLINYELP 131 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G----~d~~~v~~VI~~d~P 131 (185)
+-+|||+|+--+.++--+ -.+.++++||-=.+.
T Consensus 123 ------------------PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiH 159 (814)
T COG1201 123 ------------------PPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIH 159 (814)
T ss_pred ------------------CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhh
Confidence 578999998633333222 256778888865443
No 363
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=21.86 E-value=1.6e+02 Score=25.91 Aligned_cols=52 Identities=12% Similarity=0.037 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecC
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
..++++++|.-|.. .-..+.-||=+...+-++.+++.|+..|.-++.++||.
T Consensus 172 G~RTifN~LGPL~N-Pa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~ 223 (338)
T COG0547 172 GVRTIFNLLGPLLN-PARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGL 223 (338)
T ss_pred CCCchHHhhccccC-CCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECC
Confidence 34567788887666 34556677777789999999999999985589999994
No 364
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=21.82 E-value=1.7e+02 Score=29.39 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=41.3
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh----cC--CCCEEEEEee
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC----LA--ADGSVINIVV 156 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~----~~--~~g~~i~~v~ 156 (185)
..++||++|+ +-=|+|.|..+.+. .|=|----..+|-+.|+ .+ ..|.++.|+.
T Consensus 593 ~~kilIV~dm----lLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 593 PLDLLIVVDM----LLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCEEEEEcc----ccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 6899999999 99999999887655 47777777888988885 22 3477777765
No 365
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=21.81 E-value=79 Score=30.61 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=53.5
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
...+.+++||..-.+..+-|-.++...+ ...-+.|..+..+|+..+++|.... +....
T Consensus 628 ~~~ghrvl~~~q~~~~ldlled~~~~~~--~~~r~dG~~~~~~rq~ai~~~n~~~--------------------~~~~c 685 (696)
T KOG0383|consen 628 KSSGHRVLIFSQMIHMLDLLEDYLTYEG--KYERIDGPITGPERQAAIDRFNAPG--------------------SNQFC 685 (696)
T ss_pred HhcchhhHHHHHHHHHHHHhHHHHhccC--cceeccCCccchhhhhhccccCCCC--------------------ccceE
Confidence 4567999999988888888888887776 7788999999999999999999652 23577
Q ss_pred EEEEecC
Q 029910 102 MIVVTDA 108 (185)
Q Consensus 102 iLV~Td~ 108 (185)
.|.+|-+
T Consensus 686 fllstra 692 (696)
T KOG0383|consen 686 FLLSTRA 692 (696)
T ss_pred EEeeccc
Confidence 8888876
No 366
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.66 E-value=1.3e+02 Score=26.82 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHH---HHHHhcCCCceEEEEecCCCHHHH
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAV---CSAVSNLADISFSSLHSDLAETER 65 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l---~~~L~~~~~~~~~~l~g~~~~~~R 65 (185)
.|+.+-. ....-+++|.++|++-|-.. +..|+..-++++.+..|+.+..+.
T Consensus 143 ~Lekid~-~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDD 196 (459)
T KOG0326|consen 143 VLEKIDP-KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDD 196 (459)
T ss_pred hhhhcCc-cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccc
Confidence 4444322 44557899999999877654 455555534899999999877654
No 367
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.64 E-value=1.5e+02 Score=21.45 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSA 44 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~ 44 (185)
.+|+++||.|-..+..|+..
T Consensus 86 ~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 86 PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TTSEEEE-SCSHHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHHH
Confidence 37999999998888776654
No 368
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=21.62 E-value=2.4e+02 Score=22.96 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=30.8
Q ss_pred hHHHHHHHHhcCCCceEEEEecC-----------CCHHHHHHHHHHHhccc
Q 029910 37 ELDAVCSAVSNLADISFSSLHSD-----------LAETERTLILEEFRHTA 76 (185)
Q Consensus 37 ~~~~l~~~L~~~~~~~~~~l~g~-----------~~~~~R~~~l~~F~~~~ 76 (185)
-|.+|.+.|...| ..+..|.|+ .+.++|.+.+.+-..-.
T Consensus 39 iA~ale~~L~~~G-~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 39 IANALEEKLFAKG-YHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred HHHHHHHHHHHcC-CeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 3558889999998 899999985 68899998887754433
No 369
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=21.43 E-value=2.6e+02 Score=25.91 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhh-----------HHHHHHHHhcCCCceEEEEecCCCHHHHHH
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSNLADISFSSLHSDLAETERTL 67 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~-----------~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~ 67 (185)
+.....++++.+.. ...-.+++|++++-+. +-.++++++..| -.++.+.-+++...+..
T Consensus 180 r~rev~e~~~~l~~-~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G-~~VLlv~DdlTr~A~A~ 249 (485)
T CHL00059 180 KASSVAQVVTTLQE-RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRG-RHTLIIYDDLSKQAQAY 249 (485)
T ss_pred CchHHHHHHHHhhc-ccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcC-CCEEEEEcChhHHHHHH
Confidence 45666778888655 5556788888887544 456888998888 68999988887776654
No 370
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=21.24 E-value=7.4e+02 Score=23.77 Aligned_cols=91 Identities=10% Similarity=0.148 Sum_probs=57.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC-CCceEEEE-------------------------ecCCCHHHHHHHHHHHhccccc
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSL-------------------------HSDLAETERTLILEEFRHTAMK 78 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l-------------------------~g~~~~~~R~~~l~~F~~~~~~ 78 (185)
++|+||-++++..|..|+..|+.. +.-.+.++ ...--...|..++.....+
T Consensus 54 ~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~~~--- 130 (655)
T TIGR00631 54 NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLLER--- 130 (655)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHHhC---
Confidence 479999999999999999999765 32224444 1122345677778887765
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCC----CcEEEEcCCCCCHHHHHHHHh
Q 029910 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS----ARVLINYELPTKKETYIRRMT 142 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~----v~~VI~~d~P~~~~~yiqR~G 142 (185)
.-.|+|+|-. +..|+--|+ ..+.+.-.-.-+.+..+.+.-
T Consensus 131 --------------------~~~ivVasv~----~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 131 --------------------RDVIVVASVS----CIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred --------------------CCeEEEEcHH----HhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 3346666655 445554343 445555555566777777654
No 371
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.66 E-value=4e+02 Score=20.44 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=35.3
Q ss_pred HHHHHHHccCCCCCcEEEEcCCh---hhHHHHHHHHhcCCCceEEEEe---cCCCHHHHHHHHHHHhcc
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISFSSLH---SDLAETERTLILEEFRHT 75 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~---~~~~~l~~~L~~~~~~~~~~l~---g~~~~~~R~~~l~~F~~~ 75 (185)
+.+...+. .....+++|||-.- ...-.+++.|.+.| +.+..+. .+....+-...++.+++-
T Consensus 14 ~~i~~~~~-~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 14 ELIRKLFG-SPKGPRVLILCGPGNNGGDGLVAARHLANRG-YNVTVYLVGPPEKLSEDAKQQLEILKKM 80 (169)
T ss_dssp HHHHHHST-CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTT-CEEEEEEEESSSSTSHHHHHHHHHHHHT
T ss_pred HHHHHHhc-ccCCCeEEEEECCCCChHHHHHHHHHHHHCC-CeEEEEEEeccccCCHHHHHHHHHHHhc
Confidence 34444332 35678999999653 34457889998888 6766633 223334444556666654
No 372
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=20.52 E-value=6.7e+02 Score=22.99 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=10.6
Q ss_pred CHHHHHHHHhhhcCCCC
Q 029910 133 KKETYIRRMTTCLAADG 149 (185)
Q Consensus 133 ~~~~yiqR~GR~~~~~g 149 (185)
....++-|+|+..++.|
T Consensus 279 ~l~~LlERaG~~~~~~G 295 (460)
T PRK04196 279 DLATIYERAGRIKGKKG 295 (460)
T ss_pred HhHHHHHHhhcCCCCCe
Confidence 35667778887643344
No 373
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.22 E-value=3.3e+02 Score=19.30 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=36.4
Q ss_pred eeEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc-c
Q 029910 2 SVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH-T 75 (185)
Q Consensus 2 ~v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~-~ 75 (185)
|+.-...+.+.++.+.+.. ...=|| .|..++++|.+ .| +.+..+..- +...+.++.+..++ +
T Consensus 5 sv~d~~K~~~~~~a~~l~~-----~G~~i~-AT~gTa~~L~~----~G-i~~~~v~~~-~~~g~~~i~~~i~~~g 67 (112)
T cd00532 5 SVSDHVKAMLVDLAPKLSS-----DGFPLF-ATGGTSRVLAD----AG-IPVRAVSKR-HEDGEPTVDAAIAEKG 67 (112)
T ss_pred EEEcccHHHHHHHHHHHHH-----CCCEEE-ECcHHHHHHHH----cC-CceEEEEec-CCCCCcHHHHHHhCCC
Confidence 3444455677777777554 334455 46677777654 55 776655421 11124667888888 8
No 374
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=20.22 E-value=2.1e+02 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 48 (185)
.++.|+++- -..++|++|-|.+..++++|-+.|=..
T Consensus 17 ~~c~L~~k~---~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 17 AACRLAEKA---WRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred HHHHHHHHH---HHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 344555543 346789999999999999998888544
No 375
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=20.16 E-value=3.2e+02 Score=21.95 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcC-----ChhhHHHHHHHHhcCCCceEEEEecC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~-----~~~~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
+++.+.++- .. ....+|++||+| |.+....+.+...-.. +++..+-..
T Consensus 116 eklieyl~v-~~-~L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~-i~VL~IE~r 168 (188)
T PF09711_consen 116 EKLIEYLKV-FS-ELLKKKLLVFVNLRSYLTEEELQELYEYIKYNK-IKVLFIENR 168 (188)
T ss_dssp HHHHHHHHH-HH-H-TT--EEEEESGGGGS-HHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred HHHHHHHHH-HH-HHcCCCEEEEEchHHhcCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 444454443 22 344599999999 5677888888887776 899998764
Done!