Query 029910
Match_columns 185
No_of_seqs 137 out of 1532
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 7E-30 2.4E-34 197.2 17.5 145 5-178 16-162 (163)
2 1t5i_A C_terminal domain of A 100.0 1.3E-29 4.5E-34 197.8 17.8 147 7-182 14-163 (172)
3 1fuk_A Eukaryotic initiation f 100.0 4.3E-30 1.5E-34 198.6 14.9 146 11-185 17-164 (165)
4 2rb4_A ATP-dependent RNA helic 100.0 3E-29 1E-33 195.5 18.6 146 9-183 19-172 (175)
5 3eaq_A Heat resistant RNA depe 100.0 8.7E-29 3E-33 199.3 17.2 146 7-181 14-161 (212)
6 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.5E-29 8.4E-34 198.7 12.4 151 5-183 26-178 (185)
7 2p6n_A ATP-dependent RNA helic 100.0 1.4E-28 4.8E-33 195.6 14.4 150 4-183 35-187 (191)
8 3i32_A Heat resistant RNA depe 100.0 1.5E-27 5.3E-32 202.3 16.2 147 6-181 10-158 (300)
9 2j0s_A ATP-dependent RNA helic 99.9 1.3E-26 4.5E-31 199.7 16.4 134 24-185 275-410 (410)
10 2yjt_D ATP-dependent RNA helic 99.9 4.3E-29 1.5E-33 194.0 0.0 143 9-180 15-159 (170)
11 2db3_A ATP-dependent RNA helic 99.9 3.6E-26 1.2E-30 200.9 16.4 131 26-184 301-434 (434)
12 1s2m_A Putative ATP-dependent 99.9 9.2E-26 3.1E-30 193.5 17.4 148 8-184 242-391 (400)
13 3eiq_A Eukaryotic initiation f 99.9 2.5E-26 8.4E-31 197.3 13.1 148 9-185 265-414 (414)
14 2i4i_A ATP-dependent RNA helic 99.9 1.2E-25 4.1E-30 193.5 12.8 149 6-182 257-407 (417)
15 1xti_A Probable ATP-dependent 99.9 2.1E-24 7.3E-29 183.9 18.1 142 12-182 238-382 (391)
16 3fht_A ATP-dependent RNA helic 99.9 1.9E-24 6.4E-29 185.2 15.9 144 9-181 251-403 (412)
17 1hv8_A Putative ATP-dependent 99.9 1E-23 3.5E-28 177.5 18.0 139 11-179 226-366 (367)
18 3pey_A ATP-dependent RNA helic 99.9 1.1E-23 3.6E-28 179.0 17.6 145 7-180 226-380 (395)
19 3i5x_A ATP-dependent RNA helic 99.9 6.3E-24 2.2E-28 190.9 16.6 128 22-177 336-468 (563)
20 3sqw_A ATP-dependent RNA helic 99.9 1.4E-23 4.7E-28 190.3 16.6 128 22-177 285-417 (579)
21 1fuu_A Yeast initiation factor 99.9 1.6E-25 5.3E-30 190.9 0.0 145 12-185 247-393 (394)
22 2v1x_A ATP-dependent DNA helic 99.9 1.8E-22 6.1E-27 184.8 16.1 125 13-166 256-382 (591)
23 3tbk_A RIG-I helicase domain; 99.9 4.7E-24 1.6E-28 188.9 4.8 132 7-166 372-515 (555)
24 1oyw_A RECQ helicase, ATP-depe 99.9 2.5E-22 8.4E-27 181.1 15.9 116 24-167 235-352 (523)
25 4a2p_A RIG-I, retinoic acid in 99.9 4.9E-23 1.7E-27 182.9 10.7 125 7-160 373-510 (556)
26 4gl2_A Interferon-induced heli 99.9 8.1E-23 2.8E-27 187.7 10.9 122 7-157 382-517 (699)
27 3fmp_B ATP-dependent RNA helic 99.9 2.3E-24 7.9E-29 190.5 0.0 130 23-180 331-469 (479)
28 3oiy_A Reverse gyrase helicase 99.9 9.2E-22 3.1E-26 170.4 14.3 130 7-178 240-385 (414)
29 2ykg_A Probable ATP-dependent 99.9 7.2E-23 2.5E-27 188.0 7.1 144 7-179 381-541 (696)
30 1wp9_A ATP-dependent RNA helic 99.9 6.8E-22 2.3E-26 170.3 12.5 126 7-161 344-478 (494)
31 2d7d_A Uvrabc system protein B 99.9 2.6E-21 8.8E-26 179.1 15.3 126 11-164 431-562 (661)
32 2z0m_A 337AA long hypothetical 99.9 1.1E-21 3.8E-26 163.5 10.8 118 22-172 217-336 (337)
33 3fho_A ATP-dependent RNA helic 99.9 1.7E-22 5.9E-27 181.0 6.1 145 8-181 341-494 (508)
34 1c4o_A DNA nucleotide excision 99.9 7.8E-21 2.7E-25 176.0 15.0 127 12-166 426-558 (664)
35 4a2q_A RIG-I, retinoic acid in 99.8 2.6E-21 8.9E-26 181.6 11.1 125 7-160 614-751 (797)
36 4a2w_A RIG-I, retinoic acid in 99.8 6.5E-21 2.2E-25 182.2 10.4 125 7-160 614-751 (936)
37 1z5z_A Helicase of the SNF2/RA 99.8 2.8E-20 9.6E-25 155.3 12.8 132 7-168 97-236 (271)
38 1tf5_A Preprotein translocase 99.8 4E-20 1.4E-24 174.0 11.2 106 24-159 431-546 (844)
39 1yks_A Genome polyprotein [con 99.8 2.6E-20 8.8E-25 164.6 8.0 114 25-171 177-315 (440)
40 3dmq_A RNA polymerase-associat 99.8 1.6E-19 5.4E-24 173.3 13.3 122 10-158 489-615 (968)
41 2whx_A Serine protease/ntpase/ 99.8 1.2E-19 3.9E-24 167.0 10.7 114 25-171 355-494 (618)
42 3jux_A Protein translocase sub 99.8 5.6E-19 1.9E-23 164.3 15.2 126 4-159 453-588 (822)
43 4ddu_A Reverse gyrase; topoiso 99.8 5.4E-19 1.8E-23 171.5 12.8 125 7-171 297-503 (1104)
44 2va8_A SSO2462, SKI2-type heli 99.8 4.5E-18 1.6E-22 157.4 16.2 143 9-182 239-431 (715)
45 2wv9_A Flavivirin protease NS2 99.8 6.7E-19 2.3E-23 163.4 10.0 114 24-170 409-548 (673)
46 2z83_A Helicase/nucleoside tri 99.8 1.5E-19 5.1E-24 160.4 5.0 101 25-158 190-313 (459)
47 2fsf_A Preprotein translocase 99.8 2.6E-18 8.8E-23 161.7 12.7 124 7-160 423-585 (853)
48 2zj8_A DNA helicase, putative 99.8 4.1E-18 1.4E-22 158.1 13.6 139 11-181 226-408 (720)
49 1gku_B Reverse gyrase, TOP-RG; 99.8 2.5E-18 8.7E-23 166.2 11.9 114 25-172 275-468 (1054)
50 2xau_A PRE-mRNA-splicing facto 99.8 5.5E-19 1.9E-23 166.1 6.9 111 23-160 301-445 (773)
51 2xgj_A ATP-dependent RNA helic 99.7 6.2E-18 2.1E-22 162.9 13.3 128 10-166 330-508 (1010)
52 2p6r_A Afuhel308 helicase; pro 99.7 7.8E-18 2.7E-22 155.8 13.2 140 11-182 231-410 (702)
53 1nkt_A Preprotein translocase 99.7 1.6E-17 5.4E-22 156.9 14.2 124 7-160 442-619 (922)
54 2jlq_A Serine protease subunit 99.7 5.4E-18 1.9E-22 149.9 10.3 99 25-156 188-309 (451)
55 1z63_A Helicase of the SNF2/RA 99.7 1.5E-17 5E-22 147.4 13.0 124 7-160 326-455 (500)
56 3l9o_A ATP-dependent RNA helic 99.7 7.7E-18 2.6E-22 163.5 11.8 121 8-158 426-597 (1108)
57 3o8b_A HCV NS3 protease/helica 99.7 1.6E-18 5.6E-23 160.4 6.0 118 24-178 395-538 (666)
58 3rc3_A ATP-dependent RNA helic 99.7 3.5E-17 1.2E-21 152.0 14.0 119 26-174 321-460 (677)
59 2fwr_A DNA repair protein RAD2 99.7 5.8E-18 2E-22 148.9 7.9 114 12-159 337-455 (472)
60 1z3i_X Similar to RAD54-like; 99.7 1.2E-16 4.1E-21 147.2 14.9 121 24-169 415-541 (644)
61 3h1t_A Type I site-specific re 99.7 5.6E-17 1.9E-21 147.0 11.9 97 22-146 436-542 (590)
62 2oca_A DAR protein, ATP-depend 99.7 4.6E-17 1.6E-21 144.5 10.3 104 11-145 336-440 (510)
63 3mwy_W Chromo domain-containin 99.7 1.9E-16 6.6E-21 149.0 14.4 138 7-172 557-700 (800)
64 2eyq_A TRCF, transcription-rep 99.7 1.3E-16 4.3E-21 155.5 11.7 108 24-158 811-922 (1151)
65 1gm5_A RECG; helicase, replica 99.7 2.1E-17 7.2E-22 155.5 5.9 113 22-161 575-700 (780)
66 2v6i_A RNA helicase; membrane, 99.7 1.2E-16 4.1E-21 140.7 9.9 98 25-155 171-288 (431)
67 4a4z_A Antiviral helicase SKI2 99.7 3.8E-16 1.3E-20 150.4 12.8 126 10-166 323-502 (997)
68 4f92_B U5 small nuclear ribonu 99.5 3.1E-14 1.1E-18 143.2 12.7 118 22-166 1152-1316(1724)
69 4f92_B U5 small nuclear ribonu 99.5 1.5E-14 5E-19 145.5 9.6 118 22-166 314-481 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 2.7E-11 9.4E-16 117.0 10.8 106 24-157 536-708 (1038)
71 2vl7_A XPD; helicase, unknown 98.4 1.4E-06 4.9E-11 78.4 10.1 88 9-132 370-463 (540)
72 3hgt_A HDA1 complex subunit 3; 97.7 0.00062 2.1E-08 58.0 12.5 120 7-162 110-241 (328)
73 2ipc_A Preprotein translocase 97.4 0.00091 3.1E-08 63.9 10.4 44 3-46 421-464 (997)
74 4a15_A XPD helicase, ATP-depen 96.4 0.0066 2.3E-07 55.5 7.6 89 10-132 435-527 (620)
75 1gm5_A RECG; helicase, replica 95.9 0.022 7.6E-07 53.6 8.1 81 25-132 417-501 (780)
76 3oiy_A Reverse gyrase helicase 95.5 0.06 2E-06 45.6 8.8 84 23-130 62-148 (414)
77 3crv_A XPD/RAD3 related DNA he 94.6 0.15 5E-06 45.6 9.2 88 9-132 379-473 (551)
78 4ddu_A Reverse gyrase; topoiso 93.7 0.23 7.8E-06 48.4 9.0 83 23-129 119-204 (1104)
79 3ber_A Probable ATP-dependent 93.1 0.59 2E-05 37.0 9.3 87 13-128 100-193 (249)
80 2eyq_A TRCF, transcription-rep 92.6 0.44 1.5E-05 46.5 9.2 79 24-129 651-733 (1151)
81 1t6n_A Probable ATP-dependent 91.8 0.68 2.3E-05 35.4 7.8 80 24-129 81-166 (220)
82 1oyw_A RECQ helicase, ATP-depe 91.6 0.44 1.5E-05 42.3 7.4 49 26-75 66-114 (523)
83 2oxc_A Probable ATP-dependent 91.3 0.59 2E-05 36.3 7.0 85 14-127 82-172 (230)
84 2v1x_A ATP-dependent DNA helic 90.4 0.52 1.8E-05 42.6 6.7 48 25-73 84-131 (591)
85 3bor_A Human initiation factor 90.2 0.68 2.3E-05 36.1 6.5 79 23-127 96-179 (237)
86 1vec_A ATP-dependent RNA helic 90.1 4.6 0.00016 30.1 12.7 79 22-127 68-152 (206)
87 3gk5_A Uncharacterized rhodane 89.6 0.7 2.4E-05 31.9 5.5 39 22-61 52-90 (108)
88 2gxq_A Heat resistant RNA depe 89.3 1.5 5.2E-05 32.8 7.7 78 23-127 70-150 (207)
89 3fe2_A Probable ATP-dependent 89.3 1.2 4.3E-05 34.6 7.4 78 23-128 100-183 (242)
90 2jtq_A Phage shock protein E; 89.1 1.6 5.5E-05 28.4 6.8 50 9-61 27-76 (85)
91 3iuy_A Probable ATP-dependent 89.0 1.1 3.7E-05 34.5 6.8 78 24-128 93-174 (228)
92 1xti_A Probable ATP-dependent 88.6 1.5 5.2E-05 36.0 7.8 80 22-127 73-158 (391)
93 3hix_A ALR3790 protein; rhodan 87.5 1.4 4.7E-05 30.2 5.8 39 23-61 50-88 (106)
94 3foj_A Uncharacterized protein 87.4 0.62 2.1E-05 31.6 4.0 38 23-61 54-91 (100)
95 3eme_A Rhodanese-like domain p 86.9 0.61 2.1E-05 31.8 3.6 37 23-60 54-90 (103)
96 3iwh_A Rhodanese-like domain p 86.8 0.59 2E-05 32.4 3.6 37 23-60 54-90 (103)
97 3g5j_A Putative ATP/GTP bindin 86.6 0.62 2.1E-05 32.8 3.7 36 26-62 90-126 (134)
98 1tq1_A AT5G66040, senescence-a 86.6 0.61 2.1E-05 33.3 3.7 39 23-61 80-118 (129)
99 1qde_A EIF4A, translation init 86.4 1.6 5.4E-05 33.3 6.2 78 22-127 79-161 (224)
100 2lnd_A De novo designed protei 86.2 6.1 0.00021 26.8 9.0 66 5-75 34-101 (112)
101 1wv9_A Rhodanese homolog TT165 86.0 0.75 2.6E-05 30.8 3.7 37 23-61 52-88 (94)
102 3fmo_B ATP-dependent RNA helic 85.6 0.71 2.4E-05 37.8 4.0 86 13-129 151-243 (300)
103 2pl3_A Probable ATP-dependent 85.4 2.6 8.8E-05 32.5 7.0 77 23-127 95-177 (236)
104 1gmx_A GLPE protein; transfera 85.4 1.5 5.1E-05 30.0 5.1 39 23-61 56-94 (108)
105 3dkp_A Probable ATP-dependent 85.1 0.82 2.8E-05 35.6 4.0 90 13-129 86-183 (245)
106 3ly5_A ATP-dependent RNA helic 84.5 4.3 0.00015 32.1 8.2 77 24-127 125-207 (262)
107 2l82_A Designed protein OR32; 83.8 5.2 0.00018 28.8 7.3 48 27-75 4-51 (162)
108 2k0z_A Uncharacterized protein 83.4 1.7 5.8E-05 29.9 4.7 38 23-61 54-91 (110)
109 1wrb_A DJVLGB; RNA helicase, D 83.2 5.2 0.00018 31.0 8.1 76 25-127 100-180 (253)
110 1fuu_A Yeast initiation factor 82.9 4.7 0.00016 32.9 8.0 48 22-69 86-136 (394)
111 2fsx_A RV0390, COG0607: rhodan 82.7 1.4 4.7E-05 32.1 4.2 39 23-61 78-116 (148)
112 2db3_A ATP-dependent RNA helic 82.7 3.6 0.00012 35.1 7.4 89 12-127 112-209 (434)
113 1s2m_A Putative ATP-dependent 82.7 5.1 0.00017 33.0 8.2 80 23-129 87-171 (400)
114 3ilm_A ALR3790 protein; rhodan 82.7 1.6 5.4E-05 31.8 4.4 40 22-61 53-92 (141)
115 3tbk_A RIG-I helicase domain; 82.2 2.3 7.8E-05 36.6 6.0 76 25-128 52-134 (555)
116 3flh_A Uncharacterized protein 82.1 1.5 5E-05 31.0 4.0 39 22-61 68-108 (124)
117 1q0u_A Bstdead; DEAD protein, 81.1 1.2 4.1E-05 34.0 3.5 79 22-127 69-156 (219)
118 1qxn_A SUD, sulfide dehydrogen 81.0 1.3 4.4E-05 32.0 3.4 40 22-61 79-118 (137)
119 2j0s_A ATP-dependent RNA helic 80.8 5.3 0.00018 33.1 7.6 78 23-127 103-185 (410)
120 3d1p_A Putative thiosulfate su 80.6 1.5 5E-05 31.4 3.6 39 23-61 89-127 (139)
121 3nhv_A BH2092 protein; alpha-b 80.1 1.6 5.4E-05 31.8 3.7 38 23-61 70-109 (144)
122 1urh_A 3-mercaptopyruvate sulf 79.7 3.2 0.00011 33.1 5.8 41 23-63 228-268 (280)
123 4a2p_A RIG-I, retinoic acid in 79.3 3.6 0.00012 35.5 6.3 76 25-128 55-137 (556)
124 2hhg_A Hypothetical protein RP 79.3 1.2 4.1E-05 31.8 2.7 39 23-61 84-122 (139)
125 2i4i_A ATP-dependent RNA helic 79.2 9 0.00031 31.6 8.5 75 26-127 102-181 (417)
126 1vee_A Proline-rich protein fa 78.5 2.4 8.3E-05 30.2 4.2 39 23-61 72-110 (134)
127 2fsf_A Preprotein translocase 78.1 4.9 0.00017 38.2 7.1 57 9-67 100-160 (853)
128 1tf5_A Preprotein translocase 76.2 6.8 0.00023 37.2 7.5 58 9-68 109-170 (844)
129 4a2q_A RIG-I, retinoic acid in 75.9 5.5 0.00019 36.9 6.8 75 25-127 296-377 (797)
130 1wp9_A ATP-dependent RNA helic 75.5 6.9 0.00023 32.4 6.8 77 24-128 51-132 (494)
131 3eiq_A Eukaryotic initiation f 75.0 3.3 0.00011 34.2 4.6 80 22-127 105-189 (414)
132 3aay_A Putative thiosulfate su 74.5 7.3 0.00025 30.9 6.5 50 9-60 212-262 (277)
133 1gku_B Reverse gyrase, TOP-RG; 73.5 3.7 0.00013 39.7 5.1 76 24-127 98-181 (1054)
134 4f67_A UPF0176 protein LPG2838 72.3 4.1 0.00014 33.2 4.4 40 23-62 179-218 (265)
135 1e0c_A Rhodanese, sulfurtransf 71.1 3.4 0.00012 32.8 3.7 39 22-60 220-258 (271)
136 3i2v_A Adenylyltransferase and 70.9 2.2 7.7E-05 29.6 2.3 38 25-62 72-115 (127)
137 1nkt_A Preprotein translocase 70.7 9.4 0.00032 36.6 7.0 58 9-68 137-198 (922)
138 2ipc_A Preprotein translocase 70.1 11 0.00038 36.3 7.3 58 9-68 105-166 (997)
139 1rhs_A Sulfur-substituted rhod 69.6 5.3 0.00018 32.3 4.6 40 23-62 238-277 (296)
140 2wlr_A Putative thiosulfate su 68.8 7.5 0.00026 33.2 5.6 53 8-62 188-240 (423)
141 1uar_A Rhodanese; sulfurtransf 68.8 7.5 0.00026 31.0 5.3 38 23-60 231-269 (285)
142 2wci_A Glutaredoxin-4; redox-a 68.8 22 0.00075 25.6 7.4 44 26-70 35-84 (135)
143 1hv8_A Putative ATP-dependent 68.2 29 0.001 27.6 8.8 77 23-127 72-153 (367)
144 3ipz_A Monothiol glutaredoxin- 68.0 25 0.00087 23.8 7.5 53 12-69 8-66 (109)
145 3tg1_B Dual specificity protei 68.0 4.9 0.00017 29.4 3.7 35 25-60 93-136 (158)
146 2eg4_A Probable thiosulfate su 67.6 3.6 0.00012 32.0 3.0 39 22-61 181-219 (230)
147 3hzu_A Thiosulfate sulfurtrans 66.4 9.2 0.00032 31.4 5.5 50 9-60 97-147 (318)
148 3sqw_A ATP-dependent RNA helic 66.4 34 0.0012 30.1 9.5 77 25-127 95-181 (579)
149 1urh_A 3-mercaptopyruvate sulf 66.1 7.6 0.00026 30.9 4.8 51 9-61 72-123 (280)
150 2z0m_A 337AA long hypothetical 65.6 22 0.00075 28.0 7.5 42 25-66 56-100 (337)
151 3zyw_A Glutaredoxin-3; metal b 65.6 23 0.0008 24.3 6.8 52 12-68 6-63 (111)
152 2q5c_A NTRC family transcripti 65.3 26 0.0009 26.7 7.6 121 25-178 4-124 (196)
153 3aay_A Putative thiosulfate su 65.2 12 0.00041 29.6 5.8 50 10-61 64-114 (277)
154 3olh_A MST, 3-mercaptopyruvate 64.8 5.4 0.00018 32.6 3.7 53 8-62 239-291 (302)
155 2ykg_A Probable ATP-dependent 64.8 13 0.00044 33.3 6.5 77 26-129 62-144 (696)
156 1e0c_A Rhodanese, sulfurtransf 63.8 11 0.00037 29.8 5.2 51 9-61 67-118 (271)
157 3i5x_A ATP-dependent RNA helic 63.5 42 0.0014 29.0 9.5 77 25-127 146-232 (563)
158 2yan_A Glutaredoxin-3; oxidore 63.5 28 0.00096 23.2 6.7 57 11-72 6-68 (105)
159 4a2w_A RIG-I, retinoic acid in 60.9 8.2 0.00028 36.7 4.6 41 25-66 296-340 (936)
160 2wem_A Glutaredoxin-related pr 60.4 40 0.0014 23.5 7.6 42 26-68 20-68 (118)
161 1uar_A Rhodanese; sulfurtransf 60.4 9.6 0.00033 30.3 4.4 50 10-61 66-116 (285)
162 3b6e_A Interferon-induced heli 58.1 7.7 0.00026 28.8 3.3 40 24-64 81-124 (216)
163 3pey_A ATP-dependent RNA helic 58.0 22 0.00076 28.7 6.3 77 22-129 72-153 (395)
164 4gl2_A Interferon-induced heli 56.6 3.4 0.00012 37.1 1.2 44 24-67 55-101 (699)
165 1t3k_A Arath CDC25, dual-speci 55.4 16 0.00055 26.5 4.6 40 23-62 83-131 (152)
166 1wik_A Thioredoxin-like protei 55.0 37 0.0013 22.8 6.2 46 26-72 15-66 (109)
167 2wlr_A Putative thiosulfate su 53.9 17 0.00058 30.9 5.1 38 23-60 356-393 (423)
168 2dko_A Caspase-3; low barrier 53.8 50 0.0017 24.1 7.1 86 25-141 16-115 (146)
169 3h11_B Caspase-8; cell death, 53.8 29 0.00098 28.1 6.2 50 24-75 16-86 (271)
170 2eg4_A Probable thiosulfate su 53.4 22 0.00076 27.3 5.3 34 25-59 61-95 (230)
171 1rhs_A Sulfur-substituted rhod 53.3 16 0.00053 29.4 4.6 38 23-60 90-130 (296)
172 3hzu_A Thiosulfate sulfurtrans 52.9 10 0.00036 31.1 3.5 39 22-60 256-295 (318)
173 3e4c_A Caspase-1; zymogen, inf 51.5 34 0.0012 28.1 6.4 47 26-74 61-118 (302)
174 3h11_A CAsp8 and FADD-like apo 49.8 11 0.00039 30.6 3.2 50 24-75 42-91 (272)
175 2ouc_A Dual specificity protei 49.8 9.5 0.00032 26.6 2.4 35 25-60 83-126 (142)
176 1okg_A Possible 3-mercaptopyru 49.7 9.2 0.00031 32.4 2.7 40 25-64 246-285 (373)
177 1okg_A Possible 3-mercaptopyru 49.4 22 0.00076 29.9 5.0 39 23-62 93-133 (373)
178 2fwr_A DNA repair protein RAD2 49.3 26 0.0009 29.6 5.6 36 25-61 133-169 (472)
179 3ntd_A FAD-dependent pyridine 49.2 13 0.00044 32.4 3.7 39 22-61 521-559 (565)
180 2fz4_A DNA repair protein RAD2 49.1 36 0.0012 26.3 5.9 35 25-60 133-168 (237)
181 2vzf_A NADH-dependent FMN redu 47.1 70 0.0024 23.7 7.2 67 35-143 19-97 (197)
182 3fht_A ATP-dependent RNA helic 46.2 24 0.00082 28.8 4.7 39 23-61 93-135 (412)
183 3gx8_A Monothiol glutaredoxin- 46.1 71 0.0024 22.1 7.5 52 12-68 6-66 (121)
184 2fp3_A Caspase NC; apoptosis, 45.5 46 0.0016 27.5 6.3 50 24-75 60-121 (316)
185 2lqo_A Putative glutaredoxin R 45.1 65 0.0022 21.3 6.6 44 26-70 4-48 (92)
186 1qtn_A Caspase-8; apoptosis, d 45.0 70 0.0024 23.8 6.7 50 24-75 22-92 (164)
187 4ehd_A Caspase-3; caspase, apo 44.8 89 0.0031 25.2 7.9 85 26-141 45-143 (277)
188 1yt8_A Thiosulfate sulfurtrans 44.3 33 0.0011 30.2 5.6 49 10-60 50-98 (539)
189 3ics_A Coenzyme A-disulfide re 43.5 18 0.00062 31.9 3.7 39 22-61 538-576 (588)
190 2h54_A Caspase-1; allosteric s 43.3 80 0.0027 23.8 6.9 48 25-74 43-101 (178)
191 3olh_A MST, 3-mercaptopyruvate 42.7 28 0.00097 28.1 4.5 50 9-60 93-145 (302)
192 1yt8_A Thiosulfate sulfurtrans 42.3 21 0.00072 31.5 3.9 37 24-61 321-358 (539)
193 1pyo_A Caspase-2; apoptosis, c 41.6 58 0.002 24.3 5.8 49 24-74 32-94 (167)
194 4dik_A Flavoprotein; TM0755, e 41.5 1.2E+02 0.0042 25.7 8.6 67 8-75 248-320 (410)
195 3tp9_A Beta-lactamase and rhod 40.4 16 0.00055 31.4 2.8 40 22-61 424-463 (474)
196 3fmp_B ATP-dependent RNA helic 40.0 22 0.00075 30.2 3.6 73 25-127 162-241 (479)
197 3utn_X Thiosulfate sulfurtrans 39.9 38 0.0013 28.1 5.0 54 9-62 255-312 (327)
198 3sir_A Caspase; hydrolase; 2.6 39.9 41 0.0014 26.9 5.0 48 26-75 21-81 (259)
199 2oca_A DAR protein, ATP-depend 39.2 39 0.0013 28.8 5.1 73 26-131 158-235 (510)
200 3p45_A Caspase-6; protease, hu 39.1 1E+02 0.0035 23.4 6.9 48 26-75 45-106 (179)
201 1u6t_A SH3 domain-binding glut 38.7 33 0.0011 24.5 3.8 40 32-72 13-52 (121)
202 2ql9_A Caspase-7; cysteine pro 38.6 90 0.0031 23.5 6.5 48 26-75 45-106 (173)
203 1m72_A Caspase-1; caspase, cys 38.4 79 0.0027 25.4 6.5 48 26-75 33-93 (272)
204 3hjh_A Transcription-repair-co 37.9 26 0.0009 30.8 3.8 65 25-129 382-446 (483)
205 2j32_A Caspase-3; Pro-caspase3 37.9 67 0.0023 25.4 6.0 48 26-75 17-78 (250)
206 2q9u_A A-type flavoprotein; fl 37.4 1.7E+02 0.0058 24.0 8.8 18 127-144 319-336 (414)
207 4fn4_A Short chain dehydrogena 37.1 1.3E+02 0.0043 23.8 7.5 42 25-67 31-72 (254)
208 2ohh_A Type A flavoprotein FPR 36.8 1.7E+02 0.0059 23.8 9.6 18 127-144 319-336 (404)
209 3dmn_A Putative DNA helicase; 35.2 1.3E+02 0.0044 21.9 7.7 24 100-130 100-123 (174)
210 3qmx_A Glutaredoxin A, glutare 35.2 96 0.0033 20.4 5.7 45 23-68 13-58 (99)
211 2p6r_A Afuhel308 helicase; pro 35.0 29 0.001 31.3 3.8 75 25-130 68-147 (702)
212 2nn3_C Caspase-1; cysteine pro 33.8 1.2E+02 0.004 25.0 7.0 49 25-75 60-121 (310)
213 3sxu_A DNA polymerase III subu 33.8 65 0.0022 23.6 4.9 37 9-48 26-62 (150)
214 3od5_A Caspase-6; caspase doma 33.7 1.1E+02 0.0037 24.7 6.7 49 25-75 21-83 (278)
215 3l9o_A ATP-dependent RNA helic 33.3 58 0.002 31.6 5.7 37 24-61 226-262 (1108)
216 2zj8_A DNA helicase, putative 32.1 39 0.0013 30.6 4.1 40 25-65 68-110 (720)
217 4a4z_A Antiviral helicase SKI2 32.0 59 0.002 31.1 5.5 38 24-61 81-119 (997)
218 3o8b_A HCV NS3 protease/helica 31.9 34 0.0011 31.5 3.6 71 25-130 257-327 (666)
219 2j6p_A SB(V)-AS(V) reductase; 31.3 32 0.0011 24.7 2.8 37 26-62 68-112 (152)
220 3hly_A Flavodoxin-like domain; 30.6 1.1E+02 0.0039 21.8 5.8 60 12-73 69-135 (161)
221 2b4a_A BH3024; flavodoxin-like 30.1 1.2E+02 0.0041 20.0 7.3 108 8-150 24-134 (138)
222 2pju_A Propionate catabolism o 28.9 2E+02 0.007 22.3 9.0 124 24-178 11-136 (225)
223 1c25_A CDC25A; hydrolase, cell 28.9 37 0.0013 24.4 2.8 38 24-61 86-136 (161)
224 2j48_A Two-component sensor ki 28.8 1.1E+02 0.0037 19.1 5.0 24 51-74 46-69 (119)
225 1t1v_A SH3BGRL3, SH3 domain-bi 28.5 98 0.0034 19.8 4.7 45 27-72 3-54 (93)
226 3s5u_A Putative uncharacterize 27.8 78 0.0027 24.8 4.7 50 8-60 146-200 (220)
227 2a2k_A M-phase inducer phospha 27.6 60 0.002 23.6 3.8 37 24-60 88-137 (175)
228 3fho_A ATP-dependent RNA helic 27.4 93 0.0032 26.8 5.5 27 22-48 186-212 (508)
229 1nw9_B Caspase 9, apoptosis-re 26.9 1.1E+02 0.0038 24.4 5.6 50 24-75 20-83 (277)
230 1f1j_A Caspase-7 protease; cas 26.4 83 0.0028 25.8 4.8 48 26-75 70-131 (305)
231 3mwd_B ATP-citrate synthase; A 26.2 1.3E+02 0.0044 25.1 6.0 49 26-75 81-130 (334)
232 1qb0_A Protein (M-phase induce 25.8 54 0.0018 25.0 3.4 37 24-60 108-157 (211)
233 1c4o_A DNA nucleotide excision 25.2 3.4E+02 0.012 24.4 9.1 50 26-75 54-129 (664)
234 3qhq_A CSN2, SAG0897 family cr 24.9 76 0.0026 25.1 4.1 49 8-59 146-199 (229)
235 3ipl_A 2-succinylbenzoate--COA 24.8 3.1E+02 0.01 22.9 9.2 69 2-72 26-94 (501)
236 2a5l_A Trp repressor binding p 24.2 1.2E+02 0.004 22.1 4.9 17 127-143 83-99 (200)
237 2l82_A Designed protein OR32; 23.0 2.1E+02 0.0071 20.3 7.8 66 8-75 61-128 (162)
238 3hjh_A Transcription-repair-co 22.9 1.8E+02 0.0061 25.4 6.5 91 25-142 39-146 (483)
239 3mwy_W Chromo domain-containin 22.7 1.8E+02 0.0062 26.7 6.8 43 22-65 283-326 (800)
240 3r2u_A Metallo-beta-lactamase 22.4 18 0.00063 31.2 0.0 40 23-62 423-462 (466)
241 2ark_A Flavodoxin; FMN, struct 22.1 2.3E+02 0.0078 20.5 7.9 62 34-143 18-80 (188)
242 2va8_A SSO2462, SKI2-type heli 21.6 79 0.0027 28.4 4.1 39 25-64 75-116 (715)
243 3ff4_A Uncharacterized protein 21.3 77 0.0026 22.3 3.2 55 117-174 54-108 (122)
244 2vsw_A Dual specificity protei 20.8 19 0.00066 25.7 -0.2 39 23-61 76-122 (153)
245 1rif_A DAR protein, DNA helica 20.6 1.1E+02 0.0036 23.8 4.3 36 26-61 158-196 (282)
246 3u5c_W 40S ribosomal protein S 20.1 1.6E+02 0.0055 21.0 4.7 52 8-59 4-55 (130)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=7e-30 Score=197.24 Aligned_cols=145 Identities=22% Similarity=0.411 Sum_probs=129.9
Q ss_pred ecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
....+.+.+.|..++. ..++.++||||+++++++.+++.|...| +.+..+||+|++.+|.+++++|+++
T Consensus 16 ~~~~~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g--------- 84 (163)
T 2hjv_A 16 QVREENKFSLLKDVLM-TENPDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFDVMNEFKRG--------- 84 (163)
T ss_dssp ECCGGGHHHHHHHHHH-HHCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------
T ss_pred ECChHHHHHHHHHHHH-hcCCCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcC---------
Confidence 3444555666655555 3456899999999999999999999998 8999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHH
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVT 162 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~ 162 (185)
..++||+|++ +++|+|+|++++||+||+|+++..|+||+||+ .|+.|.+++|+++.+...
T Consensus 85 --------------~~~vlv~T~~----~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 85 --------------EYRYLVATDV----AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp --------------SCSEEEECGG----GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred --------------CCeEEEECCh----hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 6999999999 99999999999999999999999999999997 456799999999999999
Q ss_pred HHHHHHHhCCcccccc
Q 029910 163 LRSMEESLGLIVAEVP 178 (185)
Q Consensus 163 ~~~l~~~~~~~~~~~~ 178 (185)
++.+++.++.++++++
T Consensus 147 ~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 147 LADIEEYIGFEIQKIE 162 (163)
T ss_dssp HHHHHHHHTSCCEECC
T ss_pred HHHHHHHHCCCcCccC
Confidence 9999999999988764
No 2
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.3e-29 Score=197.83 Aligned_cols=147 Identities=16% Similarity=0.297 Sum_probs=128.3
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
+.+.+.+.|..++. ..++.++||||+++++++.++..|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 14 ~~~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g----------- 80 (172)
T 1t5i_A 14 KDNEKNRKLFDLLD-VLEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF----------- 80 (172)
T ss_dssp CGGGHHHHHHHHHH-HSCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------
T ss_pred ChHHHHHHHHHHHH-hCCCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHCC-----------
Confidence 44445555555555 4456899999999999999999999988 8999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCc-hHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGG-EVVTL 163 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~-e~~~~ 163 (185)
..++||||++ +++|+|+|++++||+||+|+++..|+||+||+ .|+.|.+++|+++. +...+
T Consensus 81 ------------~~~vLvaT~~----~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 144 (172)
T 1t5i_A 81 ------------QRRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 144 (172)
T ss_dssp ------------SCSEEEESSC----CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHH
T ss_pred ------------CCcEEEECCc----hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHH
Confidence 6999999999 99999999999999999999999999999997 56789999999875 67888
Q ss_pred HHHHHHhCCccccccCCcc
Q 029910 164 RSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~ 182 (185)
+.+++.++..++++|.++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 145 NDVQDRFEVNISELPDEID 163 (172)
T ss_dssp HHHHHHHCCCEEECC----
T ss_pred HHHHHHHhcchhhCChhhc
Confidence 9999999999999987654
No 3
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=4.3e-30 Score=198.56 Aligned_cols=146 Identities=28% Similarity=0.480 Sum_probs=131.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+.+.|..++. ..++.++||||++++.++.++..|...+ +.+..+||+|++.+|.+++++|+++
T Consensus 17 K~~~l~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g--------------- 79 (165)
T 1fuk_A 17 KYECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG--------------- 79 (165)
T ss_dssp HHHHHHHHHH-HTTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHcC---------------
Confidence 5555555555 3456899999999999999999999988 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHH
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEE 168 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~ 168 (185)
..++||||++ +++|+|+|++++||+||+|+++.+|+||+||++ |+.|.+++|+++.+...+..+++
T Consensus 80 --------~~~vlv~T~~----~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 80 --------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 147 (165)
T ss_dssp --------SCSEEEEEGG----GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHH
T ss_pred --------CCEEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHH
Confidence 6999999999 999999999999999999999999999999974 56799999999999999999999
Q ss_pred HhCCccccccCCccccC
Q 029910 169 SLGLIVAEVPINISEIL 185 (185)
Q Consensus 169 ~~~~~~~~~~~~~~~~l 185 (185)
.++..++++|.++.+++
T Consensus 148 ~~~~~~~~~~~~~~~~~ 164 (165)
T 1fuk_A 148 FYSTQIEELPSDIATLL 164 (165)
T ss_dssp HSSCCCEECCSCCTTTT
T ss_pred HHccCccccCccHHhhc
Confidence 99999999999988764
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=195.52 Aligned_cols=146 Identities=17% Similarity=0.315 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+.+.|..++. ..+..++||||+++++++.++..|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 19 ~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~f~~g------------- 83 (175)
T 2rb4_A 19 KDKYQALCNIYG-SITIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASIIQRFRDG------------- 83 (175)
T ss_dssp HHHHHHHHHHHT-TSCCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHHHHHHTT-------------
T ss_pred HhHHHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 436677776676 5567899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCC------CCHHHHHHHHhhh--cCCCCEEEEEeeCchH
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTTC--LAADGSVINIVVGGEV 160 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P------~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~ 160 (185)
..++||||++ +++|+|+|++++||+||+| .+..+|+||+||+ .|+.|.+++|+.+.+.
T Consensus 84 ----------~~~vLvaT~~----~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 84 ----------KEKVLITTNV----CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp ----------SCSEEEECCS----CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGH
T ss_pred ----------CCeEEEEecc----hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchH
Confidence 6999999999 9999999999999999999 8999999999997 4577999999999999
Q ss_pred HHHHHHHHHhCCccccccCCccc
Q 029910 161 VTLRSMEESLGLIVAEVPINISE 183 (185)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~ 183 (185)
..+..+++.++..+++++.+-.+
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~ 172 (175)
T 2rb4_A 150 PSLMKIQDHFNSSIKQLNAEDMD 172 (175)
T ss_dssp HHHHHHHHHHTCCCEEECSSCCC
T ss_pred HHHHHHHHHhcCcccccCCchhc
Confidence 99999999999999998876443
No 5
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=8.7e-29 Score=199.27 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=128.6
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
..+.+++.|..++. ..++.++||||++++.++.+++.|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 14 ~~~~k~~~l~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g----------- 80 (212)
T 3eaq_A 14 PVRGRLEVLSDLLY-VASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLGAFRQG----------- 80 (212)
T ss_dssp CTTSHHHHHHHHHH-HHCCSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHHHHHSS-----------
T ss_pred CHHHHHHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHCC-----------
Confidence 33444555555454 3446899999999999999999999988 8999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~ 164 (185)
..++||||++ +++|+|+|++++|||||+|+++..|+||+||++ |++|.++.|+++.+...++
T Consensus 81 ------------~~~vlvaT~~----~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~ 144 (212)
T 3eaq_A 81 ------------EVRVLVATDV----AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 144 (212)
T ss_dssp ------------SCCEEEECTT----TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHH
T ss_pred ------------CCeEEEecCh----hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHH
Confidence 6999999999 999999999999999999999999999999975 4679999999999999999
Q ss_pred HHHHHhCCccccccCCc
Q 029910 165 SMEESLGLIVAEVPINI 181 (185)
Q Consensus 165 ~l~~~~~~~~~~~~~~~ 181 (185)
.+++.++..+++++.+.
T Consensus 145 ~i~~~~~~~~~~~~~~~ 161 (212)
T 3eaq_A 145 ALERAVGRRFKRVNPPT 161 (212)
T ss_dssp HHHHHHSSCCEECCCCC
T ss_pred HHHHHhcCcCeecCCCC
Confidence 99999999998877553
No 6
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=198.73 Aligned_cols=151 Identities=18% Similarity=0.272 Sum_probs=116.9
Q ss_pred ecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
+.....+.+.|..++....++.++||||++++.++.++..|...| +.+..+||+|++.+|.+++++|++|
T Consensus 26 ~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~~~~~~f~~g--------- 95 (185)
T 2jgn_A 26 WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSG--------- 95 (185)
T ss_dssp ECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------CHHHHHHHHT---------
T ss_pred EeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHHHHHHHHHcC---------
Confidence 334444445454445434467899999999999999999999988 8999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHH
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVT 162 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~ 162 (185)
..++||||++ +++|+|+|++++||+||+|+++.+|+||+||+ .|+.|.+++|+++.+...
T Consensus 96 --------------~~~vLvaT~~----~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 96 --------------KSPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157 (185)
T ss_dssp --------------SSSEEEEEC----------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG
T ss_pred --------------CCeEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHH
Confidence 6999999999 99999999999999999999999999999997 456799999999999999
Q ss_pred HHHHHHHhCCccccccCCccc
Q 029910 163 LRSMEESLGLIVAEVPINISE 183 (185)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~ 183 (185)
++.+++.++...+++|..+.+
T Consensus 158 ~~~l~~~l~~~~~~~~~~l~~ 178 (185)
T 2jgn_A 158 TKDLLDLLVEAKQEVPSWLEN 178 (185)
T ss_dssp HHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHH
Confidence 999999998887887765543
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=195.59 Aligned_cols=150 Identities=20% Similarity=0.324 Sum_probs=128.2
Q ss_pred EecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
.+...+.+.+.|..++. . .+.++||||++++.++.++..|...+ +.+..+||+|++.+|.+++++|+++
T Consensus 35 ~~~~~~~K~~~L~~~l~-~-~~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g-------- 103 (191)
T 2p6n_A 35 EYVKEEAKMVYLLECLQ-K-TPPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKAIEAFREG-------- 103 (191)
T ss_dssp EECCGGGHHHHHHHHHT-T-SCSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHHT--------
T ss_pred EEcChHHHHHHHHHHHH-h-CCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC--------
Confidence 44555556666665565 2 24689999999999999999999888 8999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCc-hH
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGG-EV 160 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~-e~ 160 (185)
..++||||++ +++|+|+|++++||+||+|+++++|+||+||+ .|+.|.+++|+++. +.
T Consensus 104 ---------------~~~vLvaT~~----~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 104 ---------------KKDVLVATDV----ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp ---------------SCSEEEECHH----HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred ---------------CCEEEEEcCc----hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 6999999999 99999999999999999999999999999997 45679999999875 77
Q ss_pred HHHHHHHHHhCCccccccCCccc
Q 029910 161 VTLRSMEESLGLIVAEVPINISE 183 (185)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~ 183 (185)
..++.+++.++....++|..+.+
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHHHHHHHHccCcCCHHHHh
Confidence 88899999888777777765544
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.5e-27 Score=202.31 Aligned_cols=147 Identities=18% Similarity=0.285 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
...+.+++.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++.+|.++++.|++|
T Consensus 10 ~~~~~K~~~L~~ll~-~~~~~~~LVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~l~~~~r~~~~~~f~~g---------- 77 (300)
T 3i32_A 10 APVRGRLEVLSDLLY-VASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDMSQGERERVMGAFRQG---------- 77 (300)
T ss_dssp CCSSSHHHHHHHHHH-HHCCSSEEEECSSHHHHHHHHHHHHTTT-CCEEEECSCCCTHHHHHHHHHHHHT----------
T ss_pred CCHHHHHHHHHHHHH-hcCCCCEEEEECCHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhcC----------
Confidence 344445555555554 3336899999999999999999999988 8999999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHH
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTL 163 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~ 163 (185)
..++||||++ +++|+|+|++++|||||+|++.+.|+||+||++ |++|.|+.|+++.+...+
T Consensus 78 -------------~~~vLVaT~v----a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 78 -------------EVRVLVATDV----AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 140 (300)
T ss_dssp -------------SCCEEEECST----TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHH
T ss_pred -------------CceEEEEech----hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHH
Confidence 7999999999 999999999999999999999999999999975 467999999999999999
Q ss_pred HHHHHHhCCccccccCCc
Q 029910 164 RSMEESLGLIVAEVPINI 181 (185)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~ 181 (185)
+.+++.++..+++++.+.
T Consensus 141 ~~ie~~~~~~~~~~~~~~ 158 (300)
T 3i32_A 141 EALERAVGRRFKRVNPPT 158 (300)
T ss_dssp HHHHHHHTCCCEECCCCC
T ss_pred HHHHHHhCCcceEeCCCC
Confidence 999999999998877653
No 9
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.94 E-value=1.3e-26 Score=199.66 Aligned_cols=134 Identities=26% Similarity=0.547 Sum_probs=127.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
...++||||++++.++.+++.|...+ +.+..+||++++.+|.+++++|++| ..++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g-----------------------~~~vl 330 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESIMKEFRSG-----------------------ASRVL 330 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHHT-----------------------SSCEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHHHHHHHCC-----------------------CCCEE
Confidence 34699999999999999999999998 8999999999999999999999999 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHhCCccccccCCc
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
|+|++ +++|+|+|++++||+||+|+++..|+||+||+ .|+.|.+++|++..+...++.++++++..++++|.++
T Consensus 331 v~T~~----~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 331 ISTDV----WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EECGG----GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EECCh----hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999 99999999999999999999999999999997 4678999999999999999999999999999999998
Q ss_pred cccC
Q 029910 182 SEIL 185 (185)
Q Consensus 182 ~~~l 185 (185)
.++|
T Consensus 407 ~~~~ 410 (410)
T 2j0s_A 407 ADLI 410 (410)
T ss_dssp TTTC
T ss_pred hhcC
Confidence 8765
No 10
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.90 E-value=4.3e-29 Score=194.01 Aligned_cols=143 Identities=16% Similarity=0.296 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+.++|..++. ...+.++||||+++++++.++..|...+ +.+..+||+|++.+|.+++++|++|
T Consensus 15 ~~k~~~l~~ll~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~~f~~g------------- 79 (170)
T 2yjt_D 15 EHKTALLVHLLK-QPEATRSIVFVRKRERVHELANWLREAG-INNCYLEGEMVQGKRNEAIKRLTEG------------- 79 (170)
Confidence 455666666565 4556899999999999999999999987 8999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHH
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l 166 (185)
..++||||++ +++|+|+|++++||+||+|+++..|+||+||+ .|+.|.+++++...+...++.+
T Consensus 80 ----------~~~vLvaT~~----~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 145 (170)
T 2yjt_D 80 ----------RVNVLVATDV----AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 145 (170)
Confidence 6999999999 99999999999999999999999999999997 4567999999999999999999
Q ss_pred HHHhCCccccccCC
Q 029910 167 EESLGLIVAEVPIN 180 (185)
Q Consensus 167 ~~~~~~~~~~~~~~ 180 (185)
++.++..+++.+++
T Consensus 146 ~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 146 GRYIEEPIKARVID 159 (170)
Confidence 99998888766543
No 11
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=3.6e-26 Score=200.93 Aligned_cols=131 Identities=19% Similarity=0.301 Sum_probs=120.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 105 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~ 105 (185)
.++||||++++.++.+++.|...+ +.+..+||++++.+|.+++++|++| ..+||||
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~F~~g-----------------------~~~vLva 356 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKE-FPTTSIHGDRLQSQREQALRDFKNG-----------------------SMKVLIA 356 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCEEEESTTSCHHHHHHHHHHHHTS-----------------------SCSEEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHHHcC-----------------------CCcEEEE
Confidence 359999999999999999999998 8999999999999999999999999 6999999
Q ss_pred ecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeC-chHHHHHHHHHHhCCccccccCCcc
Q 029910 106 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVG-GEVVTLRSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 106 Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~-~e~~~~~~l~~~~~~~~~~~~~~~~ 182 (185)
|++ ++||+|+|++++|||||+|.+.++|+||+||+ .|+.|.+++|+++ .+......+.+.+....+++|..+.
T Consensus 357 T~v----~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 432 (434)
T 2db3_A 357 TSV----ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 432 (434)
T ss_dssp CGG----GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC
T ss_pred chh----hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999 99999999999999999999999999999997 4678999999985 5777888999999888899998876
Q ss_pred cc
Q 029910 183 EI 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 433 ~~ 434 (434)
T 2db3_A 433 TC 434 (434)
T ss_dssp --
T ss_pred hC
Confidence 54
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=9.2e-26 Score=193.52 Aligned_cols=148 Identities=24% Similarity=0.429 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
...+...+..++. .....++||||++++.++.+++.|...+ +.+..+||+++..+|.+++++|+++
T Consensus 242 ~~~k~~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g------------ 307 (400)
T 1s2m_A 242 ERQKLHCLNTLFS-KLQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKVFHEFRQG------------ 307 (400)
T ss_dssp GGGHHHHHHHHHH-HSCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHTT------------
T ss_pred hhhHHHHHHHHHh-hcCCCcEEEEEecHHHHHHHHHHHHhcC-CCeEEecCCCCHHHHHHHHHHHhcC------------
Confidence 3344455555454 3456899999999999999999999988 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHH
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~ 165 (185)
..++||+|++ +++|+|+|++++||+||+|+++..|+||+||++ |+.|.|+.+++..+...++.
T Consensus 308 -----------~~~vLv~T~~----~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~ 372 (400)
T 1s2m_A 308 -----------KVRTLVCSDL----LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYK 372 (400)
T ss_dssp -----------SSSEEEESSC----SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHH
T ss_pred -----------CCcEEEEcCc----cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHH
Confidence 6999999999 999999999999999999999999999999974 56799999999999999999
Q ss_pred HHHHhCCccccccCCcccc
Q 029910 166 MEESLGLIVAEVPINISEI 184 (185)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~ 184 (185)
+++.++.+++++|.++.+.
T Consensus 373 i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 373 IEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp HHHHHTCCCEECCSSCCGG
T ss_pred HHHHhCCCccccccccccc
Confidence 9999999999999887764
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=197.32 Aligned_cols=148 Identities=26% Similarity=0.465 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+...+.+..++. .....++||||++++.++.+++.|...+ +.+..+||+++..+|.+++++|++|
T Consensus 265 ~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g------------- 329 (414)
T 3eiq_A 265 EWKLDTLCDLYE-TLTITQAVIFINTRRKVDWLTEKMHARD-FTVSAMHGDMDQKERDVIMREFRSG------------- 329 (414)
T ss_dssp TTHHHHHHHHHH-SSCCSSCEEECSCHHHHHHHHHHHHTTT-CCCEEC---CHHHHHHHHHHHHSCC-------------
T ss_pred HhHHHHHHHHHH-hCCCCcEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHHHHHHHHcC-------------
Confidence 334555555555 4566899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHH
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l 166 (185)
..++||||++ +++|+|+|++++||+||+|+++..|+||+||++ |+.|.|+.|+++.+...++.+
T Consensus 330 ----------~~~vlv~T~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 330 ----------SSRVLITTDL----LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp -------------CEEECSS----CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHH
T ss_pred ----------CCcEEEECCc----cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHH
Confidence 6999999999 999999999999999999999999999999974 567999999999999999999
Q ss_pred HHHhCCccccccCCccccC
Q 029910 167 EESLGLIVAEVPINISEIL 185 (185)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l 185 (185)
++.++..++++|.++.++|
T Consensus 396 ~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 396 ETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp HHHTTCCCEECCC------
T ss_pred HHHHcCCccccChhhhhcC
Confidence 9999999999999998875
No 14
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=193.49 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
...+...+.+..++.....+.++||||++++.++.+++.|...+ +.+..+||+++..+|.+++++|++|
T Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g---------- 325 (417)
T 2i4i_A 257 VEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSG---------- 325 (417)
T ss_dssp CCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHT----------
T ss_pred eccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHHHHHHHcC----------
Confidence 33444455555555535567899999999999999999999988 8999999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHH
Q 029910 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTL 163 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~ 163 (185)
..++||||++ +++|+|+|++++||+||+|+++..|+||+||++ |+.|.++.|+++.+...+
T Consensus 326 -------------~~~vlvaT~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 388 (417)
T 2i4i_A 326 -------------KSPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINIT 388 (417)
T ss_dssp -------------SSCEEEECHH----HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGH
T ss_pred -------------CCCEEEECCh----hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHH
Confidence 6999999999 999999999999999999999999999999974 567999999999999999
Q ss_pred HHHHHHhCCccccccCCcc
Q 029910 164 RSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~ 182 (185)
..+.+.+.....++|..+.
T Consensus 389 ~~l~~~~~~~~~~~~~~l~ 407 (417)
T 2i4i_A 389 KDLLDLLVEAKQEVPSWLE 407 (417)
T ss_dssp HHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhcCcCCHHHH
Confidence 9999988777777665544
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.92 E-value=2.1e-24 Score=183.93 Aligned_cols=142 Identities=16% Similarity=0.301 Sum_probs=125.8
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
...+..++. ...+.++||||++++.++.+++.|...+ +.+..+||+++..+|.+++++|+++
T Consensus 238 ~~~l~~~l~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~---------------- 299 (391)
T 1xti_A 238 NRKLFDLLD-VLEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF---------------- 299 (391)
T ss_dssp HHHHHHHHH-HSCCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHH-hcCCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHhcC----------------
Confidence 333333344 3466899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCc-hHHHHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGG-EVVTLRSMEE 168 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~-e~~~~~~l~~ 168 (185)
..++||+|++ +++|+|+|++++||+||+|+++..|+||+||++ |+.|.++.++++. +...++.+++
T Consensus 300 -------~~~vlv~T~~----~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 300 -------QRRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp -------CCSEEEESCC----CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred -------CCcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 6999999999 999999999999999999999999999999974 5779999999876 5677899999
Q ss_pred HhCCccccccCCcc
Q 029910 169 SLGLIVAEVPINIS 182 (185)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (185)
.++..++++|.++.
T Consensus 369 ~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 369 RFEVNISELPDEID 382 (391)
T ss_dssp HTTCCCEECCSCCC
T ss_pred HhcCChhhCCcccc
Confidence 99999999997643
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=1.9e-24 Score=185.18 Aligned_cols=144 Identities=19% Similarity=0.331 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+...+..++. ...+.++||||++++.++.++..|...+ +.+..+||+|+..+|.+++++|++|
T Consensus 251 ~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g------------- 315 (412)
T 3fht_A 251 DEKFQALCNLYG-AITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREG------------- 315 (412)
T ss_dssp HHHHHHHHHHHH-HHSSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHHHHHHHCC-------------
Confidence 344444444444 3445799999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC------CHHHHHHHHhhhc--CCCCEEEEEeeCc-h
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCL--AADGSVINIVVGG-E 159 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~------~~~~yiqR~GR~~--~~~g~~i~~v~~~-e 159 (185)
..++||||++ +++|+|+|++++||+||+|+ +...|+||+||++ |+.|.++.++.+. +
T Consensus 316 ----------~~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 316 ----------KEKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 381 (412)
T ss_dssp ----------SCSEEEECGG----GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred ----------CCcEEEEcCc----cccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhh
Confidence 6999999999 99999999999999999994 6799999999974 5679999999876 4
Q ss_pred HHHHHHHHHHhCCccccccCCc
Q 029910 160 VVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
...++.+++.++..+++++.+.
T Consensus 382 ~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 382 MNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp HHHHHHHHHHHTCCCEEC----
T ss_pred HHHHHHHHHHHCCccccCCCcc
Confidence 8899999999999999887654
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1e-23 Score=177.46 Aligned_cols=139 Identities=22% Similarity=0.442 Sum_probs=125.1
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
..+.+..++. ..+.++||||++++.++.+++.|...+ +.+..+||+++..+|.+++++|+++
T Consensus 226 ~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~--------------- 287 (367)
T 1hv8_A 226 RFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIRLFKQK--------------- 287 (367)
T ss_dssp HHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHcC---------------
Confidence 3344443344 456899999999999999999999998 8999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHH
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEE 168 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~ 168 (185)
..++||+|++ +++|+|+|++++||+||+|+++.+|+||+||++ |++|.++.++++.+...++.+++
T Consensus 288 --------~~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 288 --------KIRILIATDV----MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp --------SSSEEEECTT----HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred --------CCeEEEECCh----hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 6999999999 999999999999999999999999999999974 46799999999999999999999
Q ss_pred HhCCccccccC
Q 029910 169 SLGLIVAEVPI 179 (185)
Q Consensus 169 ~~~~~~~~~~~ 179 (185)
.++.++++++.
T Consensus 356 ~~~~~~~~~~~ 366 (367)
T 1hv8_A 356 AMKLKIKKLKF 366 (367)
T ss_dssp HHTCCCCCBC-
T ss_pred HhCCCCceecc
Confidence 99999988753
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=1.1e-23 Score=179.00 Aligned_cols=145 Identities=21% Similarity=0.390 Sum_probs=128.2
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
......+.+..+.. .....++||||++++.++.+++.|+..+ +.+..+||+++..+|.+++++|++|
T Consensus 226 ~~~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g----------- 292 (395)
T 3pey_A 226 NEADKFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEG-HEVSILHGDLQTQERDRLIDDFREG----------- 292 (395)
T ss_dssp SHHHHHHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTT-----------
T ss_pred chHHHHHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHHHHCC-----------
Confidence 44556667777666 5667899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC------CHHHHHHHHhhhc--CCCCEEEEEeeC-
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCL--AADGSVINIVVG- 157 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~------~~~~yiqR~GR~~--~~~g~~i~~v~~- 157 (185)
..++||||++ +++|+|+|++++||+||+|+ ++..|+||+||++ |+.|.++.++..
T Consensus 293 ------------~~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 293 ------------RSKVLITTNV----LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp ------------SCCEEEECGG----GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred ------------CCCEEEECCh----hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 6999999999 99999999999999999999 9999999999974 567999999986
Q ss_pred chHHHHHHHHHHhC-CccccccCC
Q 029910 158 GEVVTLRSMEESLG-LIVAEVPIN 180 (185)
Q Consensus 158 ~e~~~~~~l~~~~~-~~~~~~~~~ 180 (185)
++...++.+++.++ ..+.+++.+
T Consensus 357 ~~~~~~~~i~~~~~~~~~~~~~~~ 380 (395)
T 3pey_A 357 NSFNILSAIQKYFGDIEMTRVPTD 380 (395)
T ss_dssp HHHHHHHHHHHHTTSCCCEECCSS
T ss_pred HHHHHHHHHHHHhCCceeecCChH
Confidence 46678889999888 777777754
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=6.3e-24 Score=190.88 Aligned_cols=128 Identities=19% Similarity=0.386 Sum_probs=118.7
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
...+.++||||++++.++.++..|... + +.+..+||+|++.+|.+++++|++|
T Consensus 336 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~-~~v~~~h~~~~~~~R~~~~~~f~~g----------------------- 391 (563)
T 3i5x_A 336 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNKRTSLVKRFKKD----------------------- 391 (563)
T ss_dssp TTTCCEEEEECSCHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHHHHHHHHHHHHC-----------------------
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEecCCCCHHHHHHHHHHHhcC-----------------------
Confidence 466789999999999999999999875 6 7999999999999999999999999
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHHHhCCcccc
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEESLGLIVAE 176 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~ 176 (185)
..+|||||++ +++|+|+|++++||+||+|.++..|+||+||++ |..|.+++|+.+.+...++.+++..+..+++
T Consensus 392 ~~~vLvaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 392 ESGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp SSEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred CCCEEEEcch----hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 7999999999 999999999999999999999999999999974 5679999999999999999999998877765
Q ss_pred c
Q 029910 177 V 177 (185)
Q Consensus 177 ~ 177 (185)
.
T Consensus 468 ~ 468 (563)
T 3i5x_A 468 Q 468 (563)
T ss_dssp E
T ss_pred c
Confidence 4
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.91 E-value=1.4e-23 Score=190.32 Aligned_cols=128 Identities=19% Similarity=0.384 Sum_probs=118.5
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
...+.++||||++++.++.+++.|... + +.+..+||+|++.+|.+++++|+++
T Consensus 285 ~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~-~~v~~~hg~~~~~~R~~~~~~F~~g----------------------- 340 (579)
T 3sqw_A 285 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNKRTSLVKRFKKD----------------------- 340 (579)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHHHHHHHHHHHHC-----------------------
T ss_pred cCCCCcEEEECCcHHHHHHHHHHHHHhhcCC-CcEEEecCCCCHHHHHHHHHHhhcC-----------------------
Confidence 466789999999999999999999876 5 7999999999999999999999999
Q ss_pred ceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHhCCcccc
Q 029910 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGLIVAE 176 (185)
Q Consensus 99 ~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~ 176 (185)
..+|||||++ +++|+|+|++++||+||+|.+++.|+||+||+ .|..|.|++|+.+.|...++.+++..+..+.+
T Consensus 341 ~~~vLVaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 341 ESGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp SSEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred CCeEEEEcch----hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 6999999999 99999999999999999999999999999997 45679999999999999999999998877654
Q ss_pred c
Q 029910 177 V 177 (185)
Q Consensus 177 ~ 177 (185)
.
T Consensus 417 ~ 417 (579)
T 3sqw_A 417 Q 417 (579)
T ss_dssp E
T ss_pred c
Confidence 4
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.90 E-value=1.6e-25 Score=190.87 Aligned_cols=145 Identities=28% Similarity=0.488 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
.+.+..++. .....++||||++++.++.+++.|...+ +.+..+||+++..+|.+++++|+++
T Consensus 247 ~~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~---------------- 308 (394)
T 1fuu_A 247 YECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG---------------- 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHh-cCCCCcEEEEECCHHHHHHHHHHHHHcC-CeEEEeeCCCCHHHHHHHHHHHHCC----------------
Confidence 334444343 3455799999999999999999999987 8999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSMEES 169 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~~~ 169 (185)
..++||||++ +++|+|+|++++||+||+|+++..|+||+||++ |++|.++.++++.+...++.+++.
T Consensus 309 -------~~~vlv~T~~----~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 377 (394)
T 1fuu_A 309 -------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 377 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHH
Confidence 6999999999 999999999999999999999999999999974 567999999999999999999999
Q ss_pred hCCccccccCCccccC
Q 029910 170 LGLIVAEVPINISEIL 185 (185)
Q Consensus 170 ~~~~~~~~~~~~~~~l 185 (185)
++..++++|.++.++|
T Consensus 378 ~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 378 YSTQIEELPSDIATLL 393 (394)
T ss_dssp ----------------
T ss_pred hCCcccccCcchhhhc
Confidence 9999999999887764
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.89 E-value=1.8e-22 Score=184.78 Aligned_cols=125 Identities=21% Similarity=0.359 Sum_probs=110.9
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (185)
.+++. +....++.++||||++++.++.++..|...| +.+..+||+|+..+|.+++++|+++
T Consensus 256 ~l~~~-l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g-~~~~~~h~~l~~~~R~~~~~~F~~g----------------- 316 (591)
T 2v1x_A 256 DIVKL-INGRYKGQSGIIYCFSQKDSEQVTVSLQNLG-IHAGAYHANLEPEDKTTVHRKWSAN----------------- 316 (591)
T ss_dssp HHHHH-HTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------------
T ss_pred HHHHH-HHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcC-----------------
Confidence 33343 4424567899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHH
Q 029910 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 93 ~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l 166 (185)
..+|||||++ +++|+|+|+|++||+||+|.+++.|+||+||++ |.+|.|+.++.+.|...+..+
T Consensus 317 ------~~~VlVAT~a----~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 317 ------EIQVVVATVA----FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp ------SSSEEEECTT----SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ------CCeEEEEech----hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 6999999999 999999999999999999999999999999985 567899999988777665544
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.89 E-value=4.7e-24 Score=188.89 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC---C--------ceEEEEecCCCHHHHHHHHHHHhc-
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---D--------ISFSSLHSDLAETERTLILEEFRH- 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~--------~~~~~l~g~~~~~~R~~~l~~F~~- 74 (185)
|.+.+.++|..+.. ..+..++||||+++++++.++..|...+ + .....+||+|++.+|.+++++|++
T Consensus 372 k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 372 KLRDLYLVLQEEYH-LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 55667777776554 4567899999999999999999998763 1 244555669999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEE
Q 029910 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINI 154 (185)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~ 154 (185)
| ..+|||||++ +++|+|+|++++||+||+|+|+..|+||+||+..++|.++.|
T Consensus 451 g-----------------------~~~vLvaT~~----~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l 503 (555)
T 3tbk_A 451 G-----------------------DNNILIATSV----ADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLL 503 (555)
T ss_dssp ------------------------CCSEEEECCC----TTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEE
T ss_pred C-----------------------CeeEEEEcch----hhcCCccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEEEE
Confidence 7 6999999999 999999999999999999999999999999943356899999
Q ss_pred eeCchHHHHHHH
Q 029910 155 VVGGEVVTLRSM 166 (185)
Q Consensus 155 v~~~e~~~~~~l 166 (185)
+++++......+
T Consensus 504 ~~~~~~~~~~~~ 515 (555)
T 3tbk_A 504 TSSADVIEKEKA 515 (555)
T ss_dssp ESCHHHHHHHHH
T ss_pred EcCCCHHHHHHH
Confidence 988766555444
No 24
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.89 E-value=2.5e-22 Score=181.12 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=107.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
++.++||||++++.++.+++.|...| +.+..+||+|+.++|.+++++|+++ ..+||
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g-----------------------~~~vl 290 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQEKFQRD-----------------------DLQIV 290 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------------------SCSEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcC-----------------------CCeEE
Confidence 56899999999999999999999998 8999999999999999999999999 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCCCEEEEEeeCchHHHHHHHH
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTLRSME 167 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~~~~~l~ 167 (185)
|||++ +++|+|+|++++||+||+|++++.|+||+||++ |.+|.++.++++.|...++.+.
T Consensus 291 VaT~a----~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 291 VATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp EECTT----SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred EEech----hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999985 5678999999887776655543
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=4.9e-23 Score=182.94 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC------------CCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
|.+.+.++|..... ..++.++||||+++++++.+++.|... | .....+||+|+..+|.+++++|++
T Consensus 373 K~~~L~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 373 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhc-CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEc-cCCcccccccCHHHHHHHHHHhcc
Confidence 45556666655443 356789999999999999999999875 3 455566788999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEE
Q 029910 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVIN 153 (185)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~ 153 (185)
| ..+|||||++ +++|+|+|++++||+||+|+|+..|+||+||+-..+|.++.
T Consensus 451 ~g-----------------------~~~vLvaT~~----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~ 503 (556)
T 4a2p_A 451 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCIL 503 (556)
T ss_dssp --------------------------CCEEEEEC---------------CEEEEETCCSCHHHHHHC--------CCEEE
T ss_pred cC-----------------------ceEEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEE
Confidence 7 6999999999 99999999999999999999999999999993224589999
Q ss_pred EeeCchH
Q 029910 154 IVVGGEV 160 (185)
Q Consensus 154 ~v~~~e~ 160 (185)
|++.++.
T Consensus 504 l~~~~~~ 510 (556)
T 4a2p_A 504 VTSKTEV 510 (556)
T ss_dssp EESCHHH
T ss_pred EEeCcch
Confidence 9988655
No 26
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=187.74 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC------CCceEEEEecC--------CCHHHHHHHHHHH
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSD--------LAETERTLILEEF 72 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~l~g~--------~~~~~R~~~l~~F 72 (185)
+.+.+.++|.........+.++||||+++++++.|++.|... | +.+..+||+ |+..+|.+++++|
T Consensus 382 k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g-~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 382 KLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG-VKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccC-cceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 444556666654442222799999999999999999999987 6 899999999 9999999999999
Q ss_pred hcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEE
Q 029910 73 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVI 152 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i 152 (185)
++| ..+|||||++ +++|+|+|++++||+||+|+|+..|+||+||+ |+.|.++
T Consensus 461 ~~g-----------------------~~~VLVaT~~----~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA-rr~g~~~ 512 (699)
T 4gl2_A 461 RTG-----------------------KINLLIATTV----AEEGLDIKECNIVIRYGLVTNEIAMVQARGRA-RADESTY 512 (699)
T ss_dssp CC--------------------------CCSEEECS----CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS-CSSSCEE
T ss_pred hcC-----------------------CCcEEEEccc----cccCCccccCCEEEEeCCCCCHHHHHHHcCCC-CCCCceE
Confidence 999 6999999999 99999999999999999999999999999995 5666666
Q ss_pred EEeeC
Q 029910 153 NIVVG 157 (185)
Q Consensus 153 ~~v~~ 157 (185)
.++..
T Consensus 513 ~l~~~ 517 (699)
T 4gl2_A 513 VLVAH 517 (699)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66644
No 27
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=2.3e-24 Score=190.46 Aligned_cols=130 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
....++||||++++.++.++..|...+ +.+..+||+|++.+|.+++++|++| ..+|
T Consensus 331 ~~~~~~lvF~~s~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~~~~f~~g-----------------------~~~i 386 (479)
T 3fmp_B 331 ITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREG-----------------------KEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCceEEEeCcHHHHHHHHHHHHhCC-ccEEEecCCCCHHHHHHHHHHHHcC-----------------------CCcE
Confidence 345799999999999999999999987 8999999999999999999999999 6999
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCC------CHHHHHHHHhhhc--CCCCEEEEEeeCc-hHHHHHHHHHHhCCc
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCL--AADGSVINIVVGG-EVVTLRSMEESLGLI 173 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~------~~~~yiqR~GR~~--~~~g~~i~~v~~~-e~~~~~~l~~~~~~~ 173 (185)
||||++ +++|+|+|++++||+||+|. +...|+||+||++ |..|.+++|+.+. +...++.+++.++..
T Consensus 387 Lv~T~~----~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~ 462 (479)
T 3fmp_B 387 LVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 462 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEccc----cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCC
Confidence 999999 99999999999999999995 5689999999974 5679999999865 488889999999999
Q ss_pred cccccCC
Q 029910 174 VAEVPIN 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
+.+++.+
T Consensus 463 ~~~l~~~ 469 (479)
T 3fmp_B 463 IERLDTD 469 (479)
T ss_dssp -------
T ss_pred ceECCCc
Confidence 9888754
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.87 E-value=9.2e-22 Score=170.41 Aligned_cols=130 Identities=16% Similarity=0.232 Sum_probs=110.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEE-EEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
+.+.+.++++. . +.++||||++++.++.++..|...+ +.+. .+||+ +|. +++|++|
T Consensus 240 ~~~~l~~~l~~-~-----~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~----~r~--~~~f~~g---------- 296 (414)
T 3oiy_A 240 SKEKLVELLEI-F-----RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF----EKN--FEDFKVG---------- 296 (414)
T ss_dssp CHHHHHHHHHH-H-----CSSEEEEESSHHHHHHHHHHHHHTT-CCEEESSSCH----HHH--HHHHHTT----------
T ss_pred HHHHHHHHHHH-c-----CCCEEEEECCHHHHHHHHHHHHHcC-CceehhhcCc----chH--HHHHhCC----------
Confidence 45555666655 2 2899999999999999999999998 8898 99985 444 9999999
Q ss_pred cCCCCCCCCCCCCceeEEEE----ecCCCCcccCcCCCCC-CcEEEEcCCC--CCHHHHHHHHhhhcC------CCCEEE
Q 029910 86 QSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELP--TKKETYIRRMTTCLA------ADGSVI 152 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~----Td~~~~~~~~G~d~~~-v~~VI~~d~P--~~~~~yiqR~GR~~~------~~g~~i 152 (185)
..++||| |++ +++|+|+|+ +++||+||+| .++.+|+||+||+++ ..|.++
T Consensus 297 -------------~~~vLvat~s~T~~----~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 297 -------------KINILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp -------------SCSEEEEECCTTCC----CCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred -------------CCeEEEEecCcCch----hhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 7999999 999 999999999 9999999999 999999999999865 479999
Q ss_pred EEeeCchHHHHHHHHHHhC--Ccccccc
Q 029910 153 NIVVGGEVVTLRSMEESLG--LIVAEVP 178 (185)
Q Consensus 153 ~~v~~~e~~~~~~l~~~~~--~~~~~~~ 178 (185)
+|+ .+...++.+++.++ ..++..+
T Consensus 360 ~~~--~~~~~~~~l~~~~~~~~~~~~~~ 385 (414)
T 3oiy_A 360 IFE--EDEEIFESLKTRLLLIAEEEIIE 385 (414)
T ss_dssp EEC--CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred EEE--ccHHHHHHHHHHhcccccccccc
Confidence 999 67888888888887 5554433
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.87 E-value=7.2e-23 Score=187.98 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCC---ceEEEE--------ecCCCHHHHHHHHHHHhc-
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSL--------HSDLAETERTLILEEFRH- 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~---~~~~~l--------~g~~~~~~R~~~l~~F~~- 74 (185)
+.+.+.+++..... ..++.++||||+++++++.+++.|...+. +++..+ ||+|+..+|.+++++|++
T Consensus 381 k~~~L~~ll~~~~~-~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 381 KLEDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHHHT-TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 34445555555333 34668999999999999999999988752 678888 559999999999999998
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC-CCCEEEE
Q 029910 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-ADGSVIN 153 (185)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~-~~g~~i~ 153 (185)
| ..+|||||++ +++|+|+|++++||+||+|++++.|+||+|| |+ ++|.++.
T Consensus 460 g-----------------------~~~vLVaT~v----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~ 511 (696)
T 2ykg_A 460 G-----------------------DHNILIATSV----ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 511 (696)
T ss_dssp ------------------------CCSCSEEEES----SCCC---CCCSEEEEESCC--CCCC----------CCCEEEE
T ss_pred C-----------------------CccEEEEech----hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEE
Confidence 8 6999999999 9999999999999999999999999999999 55 4588998
Q ss_pred EeeCchHHHHHHH----HHHhCCccccccC
Q 029910 154 IVVGGEVVTLRSM----EESLGLIVAEVPI 179 (185)
Q Consensus 154 ~v~~~e~~~~~~l----~~~~~~~~~~~~~ 179 (185)
+++.++......+ ++.++..+.+++.
T Consensus 512 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 512 LTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888777555555 5555555555543
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=6.8e-22 Score=170.29 Aligned_cols=126 Identities=20% Similarity=0.259 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEec--------CCCHHHHHHHHHHHhccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS--------DLAETERTLILEEFRHTAMK 78 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g--------~~~~~~R~~~l~~F~~~~~~ 78 (185)
|.+.+.+++..+.. ..++.++||||+++++++.+++.|...+ +.+..+|| +|+..+|.+++++|+++
T Consensus 344 k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~--- 418 (494)
T 1wp9_A 344 KMDKLKEIIREQLQ-RKQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFARG--- 418 (494)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhc-cCCCCeEEEEEccHHHHHHHHHHHHHcC-CCcEEEeccccccccccCCHHHHHHHHHHHhcC---
Confidence 44555666665443 2567899999999999999999999997 89999999 99999999999999998
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCC-CCEEEEEeeC
Q 029910 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-DGSVINIVVG 157 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~-~g~~i~~v~~ 157 (185)
..++||+|++ +++|+|+|++++||+||+|+++..|+||+||+++. .|.++.+++.
T Consensus 419 --------------------~~~vLv~T~~----~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~ 474 (494)
T 1wp9_A 419 --------------------EFNVLVATSV----GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAK 474 (494)
T ss_dssp --------------------SCSEEEECGG----GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEET
T ss_pred --------------------CceEEEECCc----cccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEec
Confidence 6899999999 99999999999999999999999999999997432 2999999988
Q ss_pred chHH
Q 029910 158 GEVV 161 (185)
Q Consensus 158 ~e~~ 161 (185)
++.+
T Consensus 475 ~t~e 478 (494)
T 1wp9_A 475 GTRD 478 (494)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 7543
No 31
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.86 E-value=2.6e-21 Score=179.14 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=109.1
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+..++..|......+.++||||+|+..++.|++.|...| +.+..+||++++.+|.+++++|+.|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g--------------- 494 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLG--------------- 494 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcC---------------
Confidence 334444443323356899999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC-----CCCHHHHHHHHhhhcC-CCCEEEEEeeCchHHHHH
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLA-ADGSVINIVVGGEVVTLR 164 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~-----P~~~~~yiqR~GR~~~-~~g~~i~~v~~~e~~~~~ 164 (185)
..+|||+|++ +++|+|+|++++||+||. |.+..+|+||+||+++ ..|.+++|+++.+....+
T Consensus 495 --------~~~VLVaT~~----l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 495 --------KYDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEI 562 (661)
T ss_dssp --------SCSEEEESCC----CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHH
T ss_pred --------CeEEEEecch----hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHH
Confidence 6999999999 999999999999999997 9999999999999865 569999999886554443
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.1e-21 Score=163.49 Aligned_cols=118 Identities=20% Similarity=0.341 Sum_probs=104.5
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
...+.++||||++++.++.+++.|. .+..+||+++..+|.+++++|+++ ..+
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~ 268 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREG-----------------------EYD 268 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTT-----------------------SCS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcC-----------------------CCc
Confidence 4566899999999999999999885 578999999999999999999999 699
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchHHHHHHHHHHhCC
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGL 172 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~~~~~~l~~~~~~ 172 (185)
+||||++ +++|+|+|++++||+||+|+++..|+||+||+ .|+.|.++.++. .+...++.+++.++.
T Consensus 269 vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 269 MLITTDV----ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp EEEECHH----HHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred EEEEcCc----cccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999 99999999999999999999999999999997 457799999999 888888888887653
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.7e-22 Score=180.96 Aligned_cols=145 Identities=19% Similarity=0.344 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (185)
.+.....+..++. .....++||||++++.++.++..|...+ +.+..+||+++..+|.+++++|++|
T Consensus 341 ~~~k~~~l~~ll~-~~~~~~~LVF~~s~~~a~~l~~~L~~~~-~~v~~~hg~~~~~~R~~il~~f~~g------------ 406 (508)
T 3fho_A 341 EEHKYNVLVELYG-LLTIGQSIIFCKKKDTAEEIARRMTADG-HTVACLTGNLEGAQRDAIMDSFRVG------------ 406 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTT-CCCCEEC-----CTTGGGTHHHHSS------------
T ss_pred hHHHHHHHHHHHH-hcCCCcEEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHCC------------
Confidence 3445555655555 4566899999999999999999999987 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCC------CCHHHHHHHHhhhc--CCCCEEEEEeeC-c
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTTCL--AADGSVINIVVG-G 158 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P------~~~~~yiqR~GR~~--~~~g~~i~~v~~-~ 158 (185)
..+|||+|++ +++|+|+|++++||+||+| .++..|+||+||++ |+.|.++.|+.+ .
T Consensus 407 -----------~~~VLVaT~~----l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 407 -----------TSKVLVTTNV----IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp -----------SCCCCEECC---------CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred -----------CCeEEEeCCh----hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 6999999999 9999999999999999999 78999999999974 567999999974 5
Q ss_pred hHHHHHHHHHHhCCccccccCCc
Q 029910 159 EVVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 159 e~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
+...+..+++.++..+++++.+.
T Consensus 472 ~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 472 SWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp SSSSHHHHHHHSCCCCC------
T ss_pred HHHHHHHHHHHHCCCcccCCCcc
Confidence 77888999999999999888654
No 34
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.85 E-value=7.8e-21 Score=176.01 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=108.8
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
..++..|......+.++||||+|+..++.|++.|...| +.+..+||++++.+|.+++++|+.|
T Consensus 426 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g---------------- 488 (664)
T 1c4o_A 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLG---------------- 488 (664)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcC----------------
Confidence 33444433222345799999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC-----CCCHHHHHHHHhhhcC-CCCEEEEEeeCchHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLA-ADGSVINIVVGGEVVTLRS 165 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~-----P~~~~~yiqR~GR~~~-~~g~~i~~v~~~e~~~~~~ 165 (185)
..+|||+|++ +++|+|+|++++||+||. |.+..+|+||+||+++ ..|.++++++..+....+.
T Consensus 489 -------~~~VLvaT~~----l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~ 557 (664)
T 1c4o_A 489 -------HYDCLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRA 557 (664)
T ss_dssp -------SCSEEEESCC----CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHH
T ss_pred -------CceEEEccCh----hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHH
Confidence 6999999999 999999999999999997 9999999999999865 4689999998866544443
Q ss_pred H
Q 029910 166 M 166 (185)
Q Consensus 166 l 166 (185)
+
T Consensus 558 i 558 (664)
T 1c4o_A 558 I 558 (664)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.85 E-value=2.6e-21 Score=181.60 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC------------CCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
|.+.+.++|..... ..++.++||||+++++++.|+..|... | .....+||+|+..+|.+++++|++
T Consensus 614 K~~~L~~lL~~~~~-~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G-~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 614 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHHHHH-HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEe-cCCcccCCCCCHHHHHHHHHHhhc
Confidence 45556666655343 356689999999999999999999764 3 456677889999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEE
Q 029910 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVIN 153 (185)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~ 153 (185)
| ..++||||++ +++|+|+|+|++||+||+|+|+..|+||+||+-..+|.++.
T Consensus 692 ~g-----------------------~~~vLVaT~~----~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~ 744 (797)
T 4a2q_A 692 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCIL 744 (797)
T ss_dssp -------------------------CCSEEEEECC-----------CCCSEEEEESCCSCHHHHHTC-------CCCEEE
T ss_pred cC-----------------------CceEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEE
Confidence 7 6999999999 99999999999999999999999999999993225689999
Q ss_pred EeeCchH
Q 029910 154 IVVGGEV 160 (185)
Q Consensus 154 ~v~~~e~ 160 (185)
|++.++.
T Consensus 745 l~~~~~~ 751 (797)
T 4a2q_A 745 VTSKTEV 751 (797)
T ss_dssp EECCHHH
T ss_pred EEeCCcH
Confidence 9988655
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.83 E-value=6.5e-21 Score=182.19 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC------------CCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
|.+.+.++|..... ..++.++||||+++++++.|+..|... | .....+||+|+..+|.+++++|++
T Consensus 614 K~~~L~~lL~~~~~-~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G-~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 614 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp HHHHHHHHHHHTTT-SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEec-CCCcccCCCCCHHHHHHHHHHhhc
Confidence 44455555555333 456799999999999999999999875 3 455667888999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEE
Q 029910 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVIN 153 (185)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~ 153 (185)
| ..++||||++ +++|+|+|+|++||+||+|+|+..|+||+||+....|.++.
T Consensus 692 ~g-----------------------~~~VLVaT~~----~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRGR~~~g~vi~ 744 (936)
T 4a2w_A 692 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCIL 744 (936)
T ss_dssp -------------------------CCSEEEEECC----------CCCCSEEEEESCCSCSHHHHCC-------CCCEEE
T ss_pred cC-----------------------CeeEEEEeCc----hhcCCcchhCCEEEEeCCCCCHHHHHHhcCCCCCCCCEEEE
Confidence 7 6999999999 99999999999999999999999999999993224588999
Q ss_pred EeeCchH
Q 029910 154 IVVGGEV 160 (185)
Q Consensus 154 ~v~~~e~ 160 (185)
+++.++.
T Consensus 745 Li~~~t~ 751 (936)
T 4a2w_A 745 VTSKTEV 751 (936)
T ss_dssp EESCHHH
T ss_pred EEeCCCH
Confidence 9987654
No 37
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=2.8e-20 Score=155.29 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
|.+.+.+++..+.. .+.++||||+++..++.|...|... | +.+..+||+++..+|.+++++|+++.
T Consensus 97 K~~~L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~--------- 163 (271)
T 1z5z_A 97 KMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP--------- 163 (271)
T ss_dssp HHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHC-SCCCEECTTSCHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHhcCCC---------
Confidence 45566666666433 4589999999999999999999875 7 89999999999999999999999983
Q ss_pred cCCCCCCCCCCCCcee-EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCc--
Q 029910 86 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG-- 158 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~-- 158 (185)
..+ +|++|++ +++|+|++.+++||+||+|||+..|.||+||+ .|+. ..++.+++.+
T Consensus 164 -------------~~~v~L~st~~----~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 164 -------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp -------------TCCEEEEECCT----TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred -------------CCCEEEEehhh----hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 455 7899999 99999999999999999999999999999997 3444 3567788876
Q ss_pred hHHHHHHHHH
Q 029910 159 EVVTLRSMEE 168 (185)
Q Consensus 159 e~~~~~~l~~ 168 (185)
|...++.++.
T Consensus 227 Ee~i~~~~~~ 236 (271)
T 1z5z_A 227 EEKIDQLLAF 236 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.82 E-value=4e-20 Score=173.99 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=95.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.|+||||+|++.++.|+..|...| +.+.+|||++.+.+|..+.+.|+. .+|+
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~g-i~~~vLhg~~~~rEr~ii~~ag~~-------------------------g~Vl 484 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHEREAQIIEEAGQK-------------------------GAVT 484 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHHHHHHTTTTST-------------------------TCEE
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCccHHHHHHHHHcCCC-------------------------CeEE
Confidence 45799999999999999999999998 899999999988888766555554 3599
Q ss_pred EEecCCCCcccCcCCCC--------CCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCch
Q 029910 104 VVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGE 159 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~--------~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e 159 (185)
||||+ ++||+|++ ++.+|||||+|.+...|+||+||+ .|.+|.+++|++..|
T Consensus 485 IATdm----AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 485 IATNM----AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp EEETT----SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EeCCc----cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999 99999999 788999999999999999999997 578899999998765
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.81 E-value=2.6e-20 Score=164.61 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=95.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
+.++||||++++.++.+++.|...+ +.+..+|| .+|.+++++|++| ..+|||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-~~v~~lhg----~~R~~~~~~F~~g-----------------------~~~vLV 228 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNR----KTFEREYPTIKQK-----------------------KPDFIL 228 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCS----SSCC--------C-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CCEEEecc----hhHHHHHhhhcCC-----------------------CceEEE
Confidence 5799999999999999999999987 89999999 4688999999999 799999
Q ss_pred EecCCCCcccCcCCCCCCcEEEE-------------------cCCCCCHHHHHHHHhhhcC---CCCEEEEEe---eCch
Q 029910 105 VTDACLPLLSSGESAISARVLIN-------------------YELPTKKETYIRRMTTCLA---ADGSVINIV---VGGE 159 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~-------------------~d~P~~~~~yiqR~GR~~~---~~g~~i~~v---~~~e 159 (185)
||++ +++|+|+| +++||+ ||.|.+.++|+||+||+++ ..|.|++|+ ++.+
T Consensus 229 aT~v----~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~ 303 (440)
T 1yks_A 229 ATDI----AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENN 303 (440)
T ss_dssp ESSS----TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred ECCh----hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhh
Confidence 9999 99999999 999986 9999999999999999754 479999996 6778
Q ss_pred HHHHHHHHHHhC
Q 029910 160 VVTLRSMEESLG 171 (185)
Q Consensus 160 ~~~~~~l~~~~~ 171 (185)
...++.++..+.
T Consensus 304 ~~~l~~l~~~~~ 315 (440)
T 1yks_A 304 AHHVCWLEASML 315 (440)
T ss_dssp TTBHHHHHHHHH
T ss_pred hhhhhhhhHHhc
Confidence 888888887753
No 40
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.81 E-value=1.6e-19 Score=173.26 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=102.2
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc-CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.+...+..++. ..++.++||||+++.+++.++..|.. .| +.+..+||+|+..+|.+++++|++++
T Consensus 489 ~K~~~L~~ll~-~~~~~k~iVF~~~~~~~~~l~~~L~~~~g-~~~~~lhG~~~~~~R~~~l~~F~~g~------------ 554 (968)
T 3dmq_A 489 PRVEWLMGYLT-SHRSQKVLVICAKAATALQLEQVLREREG-IRAAVFHEGMSIIERDRAAAWFAEED------------ 554 (968)
T ss_dssp HHHHHHHHHHH-HTSSSCCCEECSSTHHHHHHHHHHHTTTC-CCEEEECTTSCTTHHHHHHHHHHSTT------------
T ss_pred HHHHHHHHHHH-hCCCCCEEEEeCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCC------------
Confidence 34444444454 35678999999999999999999995 46 89999999999999999999999981
Q ss_pred CCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEE--EEEeeCc
Q 029910 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSV--INIVVGG 158 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~--i~~v~~~ 158 (185)
...++||||++ +++|+|+|++++||+||+|+++..|.||+||+ .|+.|.+ +.++..+
T Consensus 555 ---------~~~~vLvaT~v----~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 555 ---------TGAQVLLCSEI----GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp ---------SSCEEEECSCC----TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred ---------CcccEEEecch----hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 12999999999 99999999999999999999999999999997 4555644 4444544
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=1.2e-19 Score=167.03 Aligned_cols=114 Identities=10% Similarity=-0.003 Sum_probs=102.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..++||||++++.++.+++.|...+ +.+..+||+ +|.+++++|++| ..+|||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~----~R~~~l~~F~~g-----------------------~~~VLV 406 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRK----TFDTEYPKTKLT-----------------------DWDFVV 406 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTT----THHHHTTHHHHS-----------------------CCSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-CcEEEEChH----HHHHHHHhhcCC-----------------------CcEEEE
Confidence 4799999999999999999999998 899999984 788899999999 799999
Q ss_pred EecCCCCcccCcCCCCCCcEE--------------------EEcCCCCCHHHHHHHHhhhcCC---CCEEEEEee---Cc
Q 029910 105 VTDACLPLLSSGESAISARVL--------------------INYELPTKKETYIRRMTTCLAA---DGSVINIVV---GG 158 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~V--------------------I~~d~P~~~~~yiqR~GR~~~~---~g~~i~~v~---~~ 158 (185)
|||+ +++|+|+| +++| ||||+|.+.++|+||+||+++. +|.+++|++ +.
T Consensus 407 aTdv----~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~ 481 (618)
T 2whx_A 407 TTDI----SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN 481 (618)
T ss_dssp ECGG----GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC
T ss_pred ECcH----HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchh
Confidence 9999 99999997 9888 8889999999999999998543 689999997 77
Q ss_pred hHHHHHHHHHHhC
Q 029910 159 EVVTLRSMEESLG 171 (185)
Q Consensus 159 e~~~~~~l~~~~~ 171 (185)
|...++.++..+.
T Consensus 482 d~~~l~~le~~i~ 494 (618)
T 2whx_A 482 DEDHAHWTEAKML 494 (618)
T ss_dssp CTTCHHHHHHHHH
T ss_pred hHHHHHHHHhHhc
Confidence 8888888888753
No 42
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.80 E-value=5.6e-19 Score=164.30 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=102.6
Q ss_pred EecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccc
Q 029910 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (185)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (185)
+.++.++...+++.+......+.|+||||+|++.++.|+..|...| +.+..+||++...++..+.+.|+.+
T Consensus 453 y~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G-i~~~vLhgkq~~rE~~ii~~ag~~g-------- 523 (822)
T 3jux_A 453 FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG-IPHQVLNAKYHEKEAEIVAKAGQKG-------- 523 (822)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT-CCCEEECSCHHHHHHHHHHHHHSTT--------
T ss_pred EecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCchHHHHHHHHhCCCCC--------
Confidence 3344455555555543322356899999999999999999999998 8999999997666666555556554
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCC--------CCcEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEE
Q 029910 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTC--LAADGSVIN 153 (185)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~--------~v~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~ 153 (185)
.|+||||+ ++||+|++ +..+||||++|.+...|+||+||+ .|.+|.+++
T Consensus 524 -----------------~VtVATdm----AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~ 582 (822)
T 3jux_A 524 -----------------MVTIATNM----AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF 582 (822)
T ss_dssp -----------------CEEEEETT----TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE
T ss_pred -----------------eEEEEcch----hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE
Confidence 59999999 99999998 667999999999999999999997 567899999
Q ss_pred EeeCch
Q 029910 154 IVVGGE 159 (185)
Q Consensus 154 ~v~~~e 159 (185)
|++..|
T Consensus 583 fvsleD 588 (822)
T 3jux_A 583 FLSLED 588 (822)
T ss_dssp EEETTS
T ss_pred EechhH
Confidence 999876
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.79 E-value=5.4e-19 Score=171.54 Aligned_cols=125 Identities=15% Similarity=0.231 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEE-EEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
+.+.+.+++.. . +.++||||++++.++.++..|...| +.+. .+||+ |.+ +++|++|
T Consensus 297 k~~~L~~ll~~-~-----~~~~LVF~~s~~~a~~l~~~L~~~g-~~~~~~lhg~-----rr~-l~~F~~G---------- 353 (1104)
T 4ddu_A 297 SKEKLVELLEI-F-----RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF-----EKN-FEDFKVG---------- 353 (1104)
T ss_dssp CHHHHHHHHHH-H-----CSSEEEEESSSHHHHHHHHHHHHTT-CCEEESSSSH-----HHH-HHHHHHT----------
T ss_pred HHHHHHHHHHh-c-----CCCEEEEECcHHHHHHHHHHHHhCC-CCeeeEecCc-----HHH-HHHHHCC----------
Confidence 44555566655 2 2899999999999999999999998 8998 99993 555 9999999
Q ss_pred cCCCCCCCCCCCCceeEEEE----ecCCCCcccCcCCCCC-CcEEEEcCCCC----------------------------
Q 029910 86 QSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT---------------------------- 132 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~iLV~----Td~~~~~~~~G~d~~~-v~~VI~~d~P~---------------------------- 132 (185)
..++||| |++ ++||+|+|+ |++|||||+|.
T Consensus 354 -------------~~~VLVatas~Tdv----larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~ 416 (1104)
T 4ddu_A 354 -------------KINILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQ 416 (1104)
T ss_dssp -------------SCSEEEEETTTHHH----HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSC
T ss_pred -------------CCCEEEEecCCCCe----eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence 7999999 999 999999999 99999999999
Q ss_pred --------------------------------------------CHHHHHHHHhhhcC--CCC--EEEEEeeCchHHHHH
Q 029910 133 --------------------------------------------KKETYIRRMTTCLA--ADG--SVINIVVGGEVVTLR 164 (185)
Q Consensus 133 --------------------------------------------~~~~yiqR~GR~~~--~~g--~~i~~v~~~e~~~~~ 164 (185)
++.+|+||+||+++ .+| .+++++..+|...+.
T Consensus 417 ~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~ 496 (1104)
T 4ddu_A 417 ENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFE 496 (1104)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHH
Confidence 88999999999865 332 334444447888888
Q ss_pred HHHHHhC
Q 029910 165 SMEESLG 171 (185)
Q Consensus 165 ~l~~~~~ 171 (185)
.+++.++
T Consensus 497 ~l~~~~~ 503 (1104)
T 4ddu_A 497 SLKTRLL 503 (1104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888775
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.77 E-value=4.5e-18 Score=157.41 Aligned_cols=143 Identities=19% Similarity=0.209 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCC-----------------------------------ceE
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISF 53 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-----------------------------------~~~ 53 (185)
+.+.+++..+.. ++.++||||++++.++.++..|..... ..+
T Consensus 239 ~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 239 DAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp SHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred hHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 445555555443 458999999999999999999976421 138
Q ss_pred EEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----cC
Q 029910 54 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE 129 (185)
Q Consensus 54 ~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~----~d 129 (185)
..+||+|+..+|..+++.|++| ..+|||||++ +++|+|+|++++||+ ||
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g-----------------------~~~vlvaT~~----l~~Gidip~~~~VI~~~~~~d 368 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQR-----------------------KIKVIVATPT----LAAGVNLPARTVIIGDIYRFN 368 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-----------------------CSCEEEECGG----GGGSSCCCBSEEEECCC----
T ss_pred EEECCCCCHHHHHHHHHHHHcC-----------------------CCeEEEEChH----HhcccCCCceEEEEeCCeecc
Confidence 9999999999999999999999 7999999999 999999999999999 99
Q ss_pred -------CCCCHHHHHHHHhhhcCC----CCEEEEEeeCchHHHHHHHHHHhCCccccccCCcc
Q 029910 130 -------LPTKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 130 -------~P~~~~~yiqR~GR~~~~----~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~~~~~ 182 (185)
.|.+..+|.||+||+|+. .|.|+.+++..+. ....+++.+....+++..++.
T Consensus 369 ~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s~l~ 431 (715)
T 2va8_A 369 KKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIESKLG 431 (715)
T ss_dssp ----------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCCCSCC
T ss_pred ccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCceecCC
Confidence 899999999999998653 5899999877653 112344455555555554443
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.77 E-value=6.7e-19 Score=163.40 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=101.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.++||||++++.++.+++.|...+ +.+..+||+ +|.+++++|++| ..+||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-~~v~~lHg~----eR~~v~~~F~~g-----------------------~~~VL 460 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-KRVIQLNRK----SYDTEYPKCKNG-----------------------DWDFV 460 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECSS----SHHHHGGGGGTC-----------------------CCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-CeEEEeChH----HHHHHHHHHHCC-----------------------CceEE
Confidence 46899999999999999999999997 899999993 899999999999 79999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEE--------------------cCCCCCHHHHHHHHhhhc---CCCCEEEEEe---eC
Q 029910 104 VVTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCL---AADGSVINIV---VG 157 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~--------------------~d~P~~~~~yiqR~GR~~---~~~g~~i~~v---~~ 157 (185)
|||++ +++|+|+| +++||| ||+|.+.++|+||+||++ +..|.|+.|+ ++
T Consensus 461 VaTdv----~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~ 535 (673)
T 2wv9_A 461 ITTDI----SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSE 535 (673)
T ss_dssp EECGG----GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCC
T ss_pred EECch----hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCCh
Confidence 99999 99999999 999998 679999999999999974 4578999996 56
Q ss_pred chHHHHHHHHHHh
Q 029910 158 GEVVTLRSMEESL 170 (185)
Q Consensus 158 ~e~~~~~~l~~~~ 170 (185)
.+...++.++..+
T Consensus 536 ~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 536 DDTMLAHWTEAKI 548 (673)
T ss_dssp CCTTBHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7776777777664
No 46
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.77 E-value=1.5e-19 Score=160.39 Aligned_cols=101 Identities=9% Similarity=0.023 Sum_probs=89.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..++||||++++.++.+++.|...+ +.+..+||+ +|.+++++|++| ..+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-~~v~~lh~~----~R~~~~~~f~~g-----------------------~~~iLV 241 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-KKVIQLNRK----SYDTEYPKCKNG-----------------------DWDFVI 241 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEEESTT----CCCCCGGGSSSC-----------------------CCSEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-CcEEecCHH----HHHHHHhhccCC-----------------------CceEEE
Confidence 4799999999999999999999998 899999994 788899999998 799999
Q ss_pred EecCCCCcccCcCCCCCCcEEEE--------------------cCCCCCHHHHHHHHhhhcCC---CCEEEEEeeCc
Q 029910 105 VTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---DGSVINIVVGG 158 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~--------------------~d~P~~~~~yiqR~GR~~~~---~g~~i~~v~~~ 158 (185)
||++ +++|+|+|+ ++||+ ||+|.+.++|+||+||+++. +|.++.|+...
T Consensus 242 aT~v----~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 242 TTDI----SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ESSC----C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECCh----HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999 999999999 99999 88999999999999998543 78999999764
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=2.6e-18 Score=161.69 Aligned_cols=124 Identities=12% Similarity=0.141 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
..++...+++.+......+.|+||||+|++.++.|+..|...| +++.+|||++.+.++..+.+.|+.|
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g-i~~~vLnak~~~rEa~iia~agr~G----------- 490 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAG-IKHNVLNAKFHANEAAIVAQAGYPA----------- 490 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT-CCCEECCTTCHHHHHHHHHTTTSTT-----------
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC-----------
Confidence 3344334444432322467899999999999999999999998 8999999999888888888888775
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC-------------------------------------cEEEEcC
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVLINYE 129 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v-------------------------------------~~VI~~d 129 (185)
.|+||||+ ++||+|++.. .+|||||
T Consensus 491 --------------~VtIATnm----AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te 552 (853)
T 2fsf_A 491 --------------AVTIATNM----AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTE 552 (853)
T ss_dssp --------------CEEEEESC----CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESS
T ss_pred --------------eEEEeccc----ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEcc
Confidence 49999999 9999999984 5999999
Q ss_pred CCCCHHHHHHHHhhh--cCCCCEEEEEeeCchH
Q 029910 130 LPTKKETYIRRMTTC--LAADGSVINIVVGGEV 160 (185)
Q Consensus 130 ~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~ 160 (185)
+|.+...|.||+||+ .|.+|.+++|++..|.
T Consensus 553 ~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 553 RHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred CCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 999999999999997 5788999999987663
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.76 E-value=4.1e-18 Score=158.08 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=111.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC-----------------C---------------ceEEEEec
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------D---------------ISFSSLHS 58 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-----------------~---------------~~~~~l~g 58 (185)
+.+++..+.. ++.++||||++++.++.++..|.... . ..+..+||
T Consensus 226 ~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 226 WEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp TTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 3444444333 35899999999999999999987531 0 13899999
Q ss_pred CCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----cC----C
Q 029910 59 DLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE----L 130 (185)
Q Consensus 59 ~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~----~d----~ 130 (185)
+|+..+|..+++.|++| .++|||||++ +++|+|+|++++||+ || .
T Consensus 303 ~l~~~~R~~v~~~f~~g-----------------------~~~vlvaT~~----l~~Gvdip~~~~VI~~~~~yd~~g~~ 355 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKG-----------------------IIKAVVATPT----LSAGINTPAFRVIIRDIWRYSDFGME 355 (720)
T ss_dssp TSCHHHHHHHHHHHHTT-----------------------SSCEEEECST----TGGGCCCCBSEEEECCSEECCSSSCE
T ss_pred CCCHHHHHHHHHHHHCC-----------------------CCeEEEECcH----hhccCCCCceEEEEcCCeeecCCCCc
Confidence 99999999999999999 7999999999 999999999999999 88 6
Q ss_pred CCCHHHHHHHHhhhcCC----CCEEEEEeeCchHHHHHHHHHHhCCccccccCCc
Q 029910 131 PTKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINI 181 (185)
Q Consensus 131 P~~~~~yiqR~GR~~~~----~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~~~~ 181 (185)
|.+..+|.||+||+++. .|.|+.+++..+.. ..+++.+....+++...+
T Consensus 356 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~s~l 408 (720)
T 2zj8_A 356 RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--EVMNHYIFGKPEKLFSQL 408 (720)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--HHHHHHTTSCCCCCCCCT
T ss_pred cCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCcEeec
Confidence 99999999999998663 58899999877632 234556665666655443
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=2.5e-18 Score=166.16 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=98.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
+.++||||++++.|+.+++.|... +.+..+||++ .+++++|++| ..++||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--~~v~~lhg~~-----~~~l~~F~~G-----------------------~~~VLV 324 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--FRIGIVTATK-----KGDYEKFVEG-----------------------EIDHLI 324 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--SCEEECTTSS-----SHHHHHHHHT-----------------------SCSEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--cCeeEEeccH-----HHHHHHHHcC-----------------------CCcEEE
Confidence 478999999999999999999877 7999999998 3788999999 699999
Q ss_pred E----ecCCCCcccCcCCCCCC-cEEEEcCCC------------------------------------------------
Q 029910 105 V----TDACLPLLSSGESAISA-RVLINYELP------------------------------------------------ 131 (185)
Q Consensus 105 ~----Td~~~~~~~~G~d~~~v-~~VI~~d~P------------------------------------------------ 131 (185)
| |++ +++|+|+|+| ++||+||+|
T Consensus 325 aTas~Tdv----~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1054)
T 1gku_B 325 GTAHYYGT----LVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREIL 400 (1054)
T ss_dssp EECC----------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHH
T ss_pred EecCCCCe----eEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 899 9999999996 999999999
Q ss_pred -----------------------CCHHHHHHHHhhhcC--CCC--EEEEEeeCchHHHHHHHHHHhCC
Q 029910 132 -----------------------TKKETYIRRMTTCLA--ADG--SVINIVVGGEVVTLRSMEESLGL 172 (185)
Q Consensus 132 -----------------------~~~~~yiqR~GR~~~--~~g--~~i~~v~~~e~~~~~~l~~~~~~ 172 (185)
.+..+|+||+||+++ .+| .+++++...+...+..+++.++.
T Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 401 KKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 799999999999866 565 48888988899999999988774
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.76 E-value=5.5e-19 Score=166.12 Aligned_cols=111 Identities=12% Similarity=0.165 Sum_probs=99.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhc----------CCCceEEEEecCCCHHHHHHHHHHHh-----cccccccccccccC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSN----------LADISFSSLHSDLAETERTLILEEFR-----HTAMKWNQKVTEQS 87 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~----------~~~~~~~~l~g~~~~~~R~~~l~~F~-----~~~~~~~~~~~~~~ 87 (185)
....++||||++++.++.+++.|.. ..++.+..+||+|++++|.++++.|+ .|
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g------------ 368 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP------------ 368 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC------------
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC------------
Confidence 3468999999999999999999974 13388999999999999999999998 76
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC------------------CCCHHHHHHHHhhhcC-CC
Q 029910 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLA-AD 148 (185)
Q Consensus 88 ~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~------------------P~~~~~yiqR~GR~~~-~~ 148 (185)
..+|||||++ +++|+|+|++++||++++ |.+.++|+||+||+|+ .+
T Consensus 369 -----------~~kVlVAT~i----ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~ 433 (773)
T 2xau_A 369 -----------GRKVVISTNI----AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433 (773)
T ss_dssp -----------CEEEEEECTH----HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS
T ss_pred -----------ceEEEEeCcH----HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC
Confidence 7999999999 999999999999999888 8999999999999976 57
Q ss_pred CEEEEEeeCchH
Q 029910 149 GSVINIVVGGEV 160 (185)
Q Consensus 149 g~~i~~v~~~e~ 160 (185)
|.|+.+++..+.
T Consensus 434 G~~~~l~~~~~~ 445 (773)
T 2xau_A 434 GKCFRLYTEEAF 445 (773)
T ss_dssp EEEEESSCHHHH
T ss_pred CEEEEEecHHHh
Confidence 999999976543
No 51
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.2e-18 Score=162.92 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=106.1
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCc--------------------------------------
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-------------------------------------- 51 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~-------------------------------------- 51 (185)
.+..++..+.. ....++||||++++.|+.++..|...+..
T Consensus 330 ~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 407 (1010)
T 2xgj_A 330 DIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 407 (1010)
T ss_dssp HHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhC
Confidence 34455555433 23469999999999999999999775410
Q ss_pred eEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----
Q 029910 52 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN---- 127 (185)
Q Consensus 52 ~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~---- 127 (185)
.+..+||+|++.+|..+++.|++| .+++||||++ +++|+|+|++++||+
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~G-----------------------~ikVLVAT~~----la~GIDiP~~~vVI~~~~k 460 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQEG-----------------------FLKVLFATET----FSIGLNMPAKTVVFTSVRK 460 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHTT-----------------------CCSEEEEEGG----GGGSTTCCBSEEEESCSEE
T ss_pred CeeEECCCCCHHHHHHHHHHHhcC-----------------------CCcEEEEehH----hhccCCCCCceEEEeCCcc
Confidence 178899999999999999999999 7999999999 999999999999999
Q ss_pred cCC----CCCHHHHHHHHhhhcCC----CCEEEEEeeCc-hHHHHHHH
Q 029910 128 YEL----PTKKETYIRRMTTCLAA----DGSVINIVVGG-EVVTLRSM 166 (185)
Q Consensus 128 ~d~----P~~~~~yiqR~GR~~~~----~g~~i~~v~~~-e~~~~~~l 166 (185)
||. |.++.+|+||+||+++. .|.|+.++++. +...+..+
T Consensus 461 fd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 461 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp ECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred cCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 99999999999998654 39999999865 54444444
No 52
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.75 E-value=7.8e-18 Score=155.79 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=110.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC-----------------------------CceEEEEecCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------------------DISFSSLHSDLA 61 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-----------------------------~~~~~~l~g~~~ 61 (185)
+.+++..++. ++.++||||++++.++.++..|.... ...+..+||+|+
T Consensus 231 ~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 231 FEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp HHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred HHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 4455544343 45899999999999999999886420 024788999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----cC---CCCCH
Q 029910 62 ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE---LPTKK 134 (185)
Q Consensus 62 ~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~----~d---~P~~~ 134 (185)
.++|..+++.|++| .++|||||++ +++|+|+|++++||+ || .|.+.
T Consensus 308 ~~~R~~v~~~f~~g-----------------------~~~vlvaT~~----l~~Gidip~~~~VI~~~~~yd~~~~~~s~ 360 (702)
T 2p6r_A 308 NGQRRVVEDAFRRG-----------------------NIKVVVATPT----LAAGVNLPARRVIVRSLYRFDGYSKRIKV 360 (702)
T ss_dssp HHHHHHHHHHHHTT-----------------------SCCEEEECST----TTSSSCCCBSEEEECCSEEESSSEEECCH
T ss_pred HHHHHHHHHHHHCC-----------------------CCeEEEECcH----HhccCCCCceEEEEcCceeeCCCCCcCCH
Confidence 99999999999999 7999999999 999999999999999 77 79999
Q ss_pred HHHHHHHhhhcCC----CCEEEEEeeCchHHHHHHHHHHhCCccccccCCcc
Q 029910 135 ETYIRRMTTCLAA----DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 182 (185)
Q Consensus 135 ~~yiqR~GR~~~~----~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~~~~~ 182 (185)
.+|.||+||+++. .|.|+.+++..+.. ..+++.+....+++..++.
T Consensus 361 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~l~~~~e~~~s~l~ 410 (702)
T 2p6r_A 361 SEYKQMAGRAGRPGMDERGEAIIIVGKRDRE--IAVKRYIFGEPERITSKLG 410 (702)
T ss_dssp HHHHHHHTTBSCTTTCSCEEEEEECCGGGHH--HHHHTTTSSCCCCCCCCCC
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCceeecC
Confidence 9999999998653 58999999877632 2233445555555554443
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.74 E-value=1.6e-17 Score=156.93 Aligned_cols=124 Identities=14% Similarity=0.144 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
..++...+++.+......++|+||||+|++.++.|+..|...| +++.+|||++.+.++..+.+.|+.|
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~G-i~~~vLnak~~~rEa~iia~agr~G----------- 509 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYHEQEATIIAVAGRRG----------- 509 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCHHHHHHHHHTTTSTT-----------
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC-----------
Confidence 3334334444433312356899999999999999999999998 9999999998888877777777765
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC--------------------------------------------
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------------- 122 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v-------------------------------------------- 122 (185)
.|+||||+ ++||+|++.+
T Consensus 510 --------------~VtIATnm----AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 510 --------------GVTVATNM----AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp --------------CEEEEETT----CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred --------------eEEEecch----hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 48999999 9999999986
Q ss_pred --------cEEEEcCCCCCHHHHHHHHhhh--cCCCCEEEEEeeCchH
Q 029910 123 --------RVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEV 160 (185)
Q Consensus 123 --------~~VI~~d~P~~~~~yiqR~GR~--~~~~g~~i~~v~~~e~ 160 (185)
.+|||||+|.+...|.||+||+ .|.+|.+++|++..|.
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999997 5788999999987654
No 54
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.74 E-value=5.4e-18 Score=149.92 Aligned_cols=99 Identities=11% Similarity=0.036 Sum_probs=89.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..++||||++++.++.+++.|...+ +.+..+||++. .+++++|++| ..+|||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-~~~~~lh~~~~----~~~~~~f~~g-----------------------~~~vLV 239 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRKTF----DTEYPKTKLT-----------------------DWDFVV 239 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECTTTH----HHHGGGGGSS-----------------------CCSEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-CeEEECCHHHH----HHHHHhhccC-----------------------CceEEE
Confidence 4699999999999999999999988 89999999754 5789999999 799999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcC--------------------CCCCHHHHHHHHhhhcC--C-CCEEEEEee
Q 029910 105 VTDACLPLLSSGESAISARVLINYE--------------------LPTKKETYIRRMTTCLA--A-DGSVINIVV 156 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d--------------------~P~~~~~yiqR~GR~~~--~-~g~~i~~v~ 156 (185)
||++ +++|+|+|+ ++||||| +|.+.++|+||+||+++ . +|.++.|..
T Consensus 240 aT~v----~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 240 TTDI----SEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp ECGG----GGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECCH----HHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999 999999999 9999999 99999999999999743 3 678887764
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.74 E-value=1.5e-17 Score=147.39 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (185)
|...+.+++..+. ..+.++||||+++.+++.+...|... + +.+..+||+++..+|.+++++|+++.
T Consensus 326 K~~~l~~~l~~~~---~~~~k~lvF~~~~~~~~~l~~~l~~~~~-~~~~~~~g~~~~~~R~~~~~~F~~~~--------- 392 (500)
T 1z63_A 326 KMIRTMEIIEEAL---DEGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP--------- 392 (500)
T ss_dssp HHHHHHHHHHHHH---TTTCCEEEECSCHHHHHHHHHHHHHHHT-CCCCEEETTSCHHHHHHHHHHHHHCT---------
T ss_pred hHHHHHHHHHHHH---ccCCcEEEEEehHHHHHHHHHHHHHhhC-CCeEEEECCCCHHHHHHHHHHhcCCC---------
Confidence 3445556665543 35689999999999999999999875 6 78999999999999999999999983
Q ss_pred cCCCCCCCCCCCCcee-EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCchH
Q 029910 86 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGGEV 160 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~e~ 160 (185)
..+ +|++|++ +++|+|+|.+++||+||+|||+..|.||+||+ .|+. ..++.++..+..
T Consensus 393 -------------~~~vil~st~~----~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 393 -------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp -------------TCCCCEEECCC----C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred -------------CCCEEEEeccc----ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 344 7999999 99999999999999999999999999999997 3443 345777877643
No 56
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.7e-18 Score=163.54 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCce-----------------------------------
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS----------------------------------- 52 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~----------------------------------- 52 (185)
...+..++..+.. ....++||||++++.|+.++..|...+ +.
T Consensus 426 ~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 502 (1108)
T 3l9o_A 426 KGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLD-FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 502 (1108)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHHTCSHH-HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHH
T ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHh
Confidence 4455566666444 346799999999999999999986643 22
Q ss_pred ----EEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEc
Q 029910 53 ----FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128 (185)
Q Consensus 53 ----~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~ 128 (185)
+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|++++||++
T Consensus 503 l~~gV~~~Hg~l~~~~R~~v~~~F~~G-----------------------~ikVLVAT~v----la~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 503 LRRGIGIHHSGLLPILKEVIEILFQEG-----------------------FLKVLFATET----FSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp HHHTEEEECSCSCHHHHHHHHHHHHHT-----------------------CCCEEEEESC----CCSCCCC--CEEEESC
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHhCC-----------------------CCeEEEECcH----HhcCCCCCCceEEEec
Confidence 79999999999999999999999 7999999999 9999999999999988
Q ss_pred CCC--------CCHHHHHHHHhhhcCC----CCEEEEEeeCc
Q 029910 129 ELP--------TKKETYIRRMTTCLAA----DGSVINIVVGG 158 (185)
Q Consensus 129 d~P--------~~~~~yiqR~GR~~~~----~g~~i~~v~~~ 158 (185)
+.| .++..|+||+||+++. .|.|+.++.+.
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 764 3778899999998643 47888888765
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.73 E-value=1.6e-18 Score=160.45 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=97.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.++||||++++.++.+++.|+..+ +.+..+||+|++++ |+++ ..+||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g-~~v~~lHG~l~q~e-------r~~~-----------------------~~~VL 443 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG-INAVAYYRGLDVSV-------IPTI-----------------------GDVVV 443 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECTTSCGGG-------SCSS-----------------------SCEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC-CcEEEecCCCCHHH-------HHhC-----------------------CCcEE
Confidence 56899999999999999999999998 89999999999875 3444 46999
Q ss_pred EEecCCCCcccCcCCCCCCcEEE----------EcC-----------CCCCHHHHHHHHhhhcC-CCCEEEEEeeCchHH
Q 029910 104 VVTDACLPLLSSGESAISARVLI----------NYE-----------LPTKKETYIRRMTTCLA-ADGSVINIVVGGEVV 161 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI----------~~d-----------~P~~~~~yiqR~GR~~~-~~g~~i~~v~~~e~~ 161 (185)
||||+ ++||+|++ +++|| ||| +|.+.++|+||+||+++ .+|. +.|+++.+..
T Consensus 444 VATdV----aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 444 VATDA----LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EECTT----HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred EECCh----HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 99999 99999987 99988 788 99999999999999865 5588 9999876654
Q ss_pred H--H--HHHHHHhCCcccccc
Q 029910 162 T--L--RSMEESLGLIVAEVP 178 (185)
Q Consensus 162 ~--~--~~l~~~~~~~~~~~~ 178 (185)
. + ..+++..+..+.+..
T Consensus 518 ~~~l~~~~i~~~~~~~~~~~~ 538 (666)
T 3o8b_A 518 SGMFDSSVLCECYDAGCAWYE 538 (666)
T ss_dssp SSBCCHHHHHHHHHHHHHTSC
T ss_pred cccccHHHHHHHhcCCccccc
Confidence 4 3 566665554444443
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.72 E-value=3.5e-17 Score=151.97 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=100.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc--ccccccccccccCCCCCCCCCCCCceeEE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH--TAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
...||||++++.++.+++.|...+ +.+..+||+|++++|.++++.|++ | ..+||
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g-~~v~~lHG~L~~~~R~~~~~~F~~~~g-----------------------~~~VL 376 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRG-LESAVIYGSLPPGTKLAQAKKFNDPND-----------------------PCKIL 376 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHCTTS-----------------------SCCEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcC-CCeeeeeccCCHHHHHHHHHHHHccCC-----------------------CeEEE
Confidence 456899999999999999999987 899999999999999999999998 6 69999
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCC--------------CCCHHHHHHHHhhhcCCC-----CEEEEEeeCchHHHHH
Q 029910 104 VVTDACLPLLSSGESAISARVLINYEL--------------PTKKETYIRRMTTCLAAD-----GSVINIVVGGEVVTLR 164 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~--------------P~~~~~yiqR~GR~~~~~-----g~~i~~v~~~e~~~~~ 164 (185)
|||++ +++|+|+ ++++||++++ |.+..+|+||+||+|+.+ |.|+.+ ...+...++
T Consensus 377 VATdi----~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~ 450 (677)
T 3rc3_A 377 VATDA----IGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLK 450 (677)
T ss_dssp EECGG----GGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHH
T ss_pred EeCcH----HHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHH
Confidence 99999 9999999 8999999999 889999999999986543 555544 455655555
Q ss_pred HHHHHhCCcc
Q 029910 165 SMEESLGLIV 174 (185)
Q Consensus 165 ~l~~~~~~~~ 174 (185)
.+.......+
T Consensus 451 ~~~~~~~~~i 460 (677)
T 3rc3_A 451 EILKRPVDPI 460 (677)
T ss_dssp HHHHSCCCCC
T ss_pred HHHhcCcchh
Confidence 5555433333
No 59
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.72 E-value=5.8e-18 Score=148.95 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=96.4
Q ss_pred HHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
.+.+..++. ...+.++||||++++.++.+++.|. +..+||+++..+|.+++++|++|
T Consensus 337 ~~~l~~~l~-~~~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g---------------- 393 (472)
T 2fwr_A 337 IRKLREILE-RHRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTG---------------- 393 (472)
T ss_dssp HHHHHHHHH-HTSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHS----------------
T ss_pred HHHHHHHHH-hCCCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCC----------------
Confidence 344444444 3557899999999999999999883 45789999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC--C---CCEEEEEeeCch
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--A---DGSVINIVVGGE 159 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~--~---~g~~i~~v~~~e 159 (185)
..++||+|++ +++|+|+|++++||+||+|+++..|+||+||+++ + ...++.+++.+.
T Consensus 394 -------~~~vLv~T~~----~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 394 -------RFRAIVSSQV----LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp -------SCSBCBCSSC----CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred -------CCCEEEEcCc----hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 6999999999 9999999999999999999999999999999743 2 235666777653
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.71 E-value=1.2e-16 Score=147.23 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=102.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 103 (185)
.+.++||||+++.+++.+...|...| +.+..+||+++..+|.+++++|+++.. ....+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~~--------------------~~~v~L 473 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPSS--------------------PEFIFM 473 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTTC--------------------CCCEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHHHHHHHhcCCCC--------------------CcEEEE
Confidence 46899999999999999999999888 899999999999999999999999830 012489
Q ss_pred EEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhh--cCCC--CEEEEEeeCc--hHHHHHHHHHH
Q 029910 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG--EVVTLRSMEES 169 (185)
Q Consensus 104 V~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~--~~~~--g~~i~~v~~~--e~~~~~~l~~~ 169 (185)
++|++ +++|+|++.+++||+||+|||+..|.|++||+ .|+. ..++.+++.+ |...++..+.+
T Consensus 474 ~st~a----~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 474 LSSKA----GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp EEGGG----SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred Eeccc----ccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999997 3443 4677788876 44455555554
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.70 E-value=5.6e-17 Score=146.95 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC-------CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~-------~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (185)
..++.++||||+++++|+.++..|...+ .-.+..+||+++. +|.+++++|+++
T Consensus 436 ~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~------------------- 495 (590)
T 3h1t_A 436 TDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQEL------------------- 495 (590)
T ss_dssp HCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCT-------------------
T ss_pred cCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCC-------------------
Confidence 4566899999999999999999997653 0237889998764 799999999998
Q ss_pred CCCCcee---EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcC
Q 029910 95 KDEHKSH---MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (185)
Q Consensus 95 ~~~~~~~---iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~ 146 (185)
..+ |||||++ +++|+|+|++++||+|++|+++..|+||+||+++
T Consensus 496 ----~~~~~~ilvtt~~----l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R 542 (590)
T 3h1t_A 496 ----ETSTPVILTTSQL----LTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTR 542 (590)
T ss_dssp ----TCCCCCEEEESST----TTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCC
T ss_pred ----CCCCCEEEEECCh----hhcCccchheeEEEEEecCCChHHHHHHHhhhcc
Confidence 344 8889999 9999999999999999999999999999999855
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.70 E-value=4.6e-17 Score=144.53 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
+.+++..... ..+.++||||+ .+.++.+++.|...+ ..+..+||+++..+|.+++++|+++
T Consensus 336 l~~~l~~~~~--~~~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g--------------- 396 (510)
T 2oca_A 336 IAKLAIKLAQ--KDENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENG--------------- 396 (510)
T ss_dssp HHHHHHHHHT--TTCEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHh--cCCCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCC---------------
Confidence 4444444222 34577888887 888999999999987 5999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEe-cCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc
Q 029910 91 SETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~T-d~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~ 145 (185)
..++|||| ++ +++|+|+|++++||++++|+++..|+||+||++
T Consensus 397 --------~~~vLv~T~~~----~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~g 440 (510)
T 2oca_A 397 --------KGIIIVASYGV----FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVL 440 (510)
T ss_dssp --------CSCEEEEEHHH----HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHH
T ss_pred --------CCCEEEEEcCh----hhcccccccCcEEEEeCCCCCHHHHHHHHhccc
Confidence 68999999 99 999999999999999999999999999999974
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-16 Score=148.96 Aligned_cols=138 Identities=16% Similarity=0.217 Sum_probs=113.5
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|...+.++|..+ ...+.++||||+...+++.|...|...| +.+..+||+++..+|.+++++|+++.
T Consensus 557 K~~~L~~lL~~~---~~~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~F~~~~---------- 622 (800)
T 3mwy_W 557 KMVLLDQLLTRL---KKDGHRVLIFSQMVRMLDILGDYLSIKG-INFQRLDGTVPSAQRRISIDHFNSPD---------- 622 (800)
T ss_dssp HHHHHHHHHHHH---TTTTCCEEEEESCHHHHHHHHHHHHHHT-CCCEEESTTSCHHHHHHHHHTTSSTT----------
T ss_pred HHHHHHHHHHHH---hhCCCeEEEEechHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhCCC----------
Confidence 344555566553 3456899999999999999999999888 89999999999999999999999873
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhc--CCC--CEEEEEeeCc--hH
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AAD--GSVINIVVGG--EV 160 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~--~~~--g~~i~~v~~~--e~ 160 (185)
+....+|++|.+ ++.|+|++.+++||+||+|||+..++||+||+. |+. ..++.+++.+ |.
T Consensus 623 ----------~~~~v~LlSt~a----gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 623 ----------SNDFVFLLSTRA----GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp ----------CSCCCEEEEHHH----HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred ----------CCceEEEEeccc----ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 012359999999 999999999999999999999999999999973 333 4667788876 66
Q ss_pred HHHHHHHHHhCC
Q 029910 161 VTLRSMEESLGL 172 (185)
Q Consensus 161 ~~~~~l~~~~~~ 172 (185)
..++..+++...
T Consensus 689 ~i~~~~~~K~~l 700 (800)
T 3mwy_W 689 EVLERARKKMIL 700 (800)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 677777766543
No 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.68 E-value=1.3e-16 Score=155.52 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=98.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.+.+++|||+++++++.+++.|... ++..+..+||+|++.+|.+++++|++| ..+|
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-----------------------~~~V 867 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-----------------------RFNV 867 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-----------------------SCCE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-----------------------CCcE
Confidence 4689999999999999999999876 237899999999999999999999999 6999
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCC-CCCHHHHHHHHhhhc--CCCCEEEEEeeCc
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRMTTCL--AADGSVINIVVGG 158 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~-P~~~~~yiqR~GR~~--~~~g~~i~~v~~~ 158 (185)
||||++ +++|+|+|++++||+++. ++++..|.||+||++ ++.|.|+.++.+.
T Consensus 868 LVaT~v----~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 868 LVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEESST----TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEECCc----ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999 999999999999999998 579999999999974 5568999888664
No 65
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.68 E-value=2.1e-17 Score=155.54 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=95.9
Q ss_pred CCCCCcEEEEcCCh--------hhHHHHHHHHhc-C-CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 22 RRPGLPMIVCCSSR--------DELDAVCSAVSN-L-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 22 ~~~~~~~IIF~~~~--------~~~~~l~~~L~~-~-~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
-..+.+++|||++. ..++.+++.|.. . +++.+..+||+|+..+|.+++++|++|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G---------------- 638 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG---------------- 638 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT----------------
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC----------------
Confidence 34568999999965 457888899987 2 237899999999999999999999999
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCC-CHHHHHHHHhhhc--CCCCEEEEEeeCchHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCL--AADGSVINIVVGGEVV 161 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~-~~~~yiqR~GR~~--~~~g~~i~~v~~~e~~ 161 (185)
..+|||||++ +++|+|+|++++||+||.|+ +...|.||+||++ +..|.|+.++.+.+..
T Consensus 639 -------~~~ILVaT~v----ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 639 -------RYDILVSTTV----IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp -------SSSBCCCSSC----CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred -------CCeEEEECCC----CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 6999999999 99999999999999999996 6888999999974 5679999998753333
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.67 E-value=1.2e-16 Score=140.67 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=86.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
+.++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++| ..+|||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~----~r~~~~~~f~~g-----------------------~~~vLV 222 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG-KKVLYLNRK----TFESEYPKCKSE-----------------------KWDFVI 222 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT-CCEEEESTT----THHHHTTHHHHS-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CeEEEeCCc----cHHHHHHhhcCC-----------------------CCeEEE
Confidence 4689999999999999999999987 899999997 678899999999 799999
Q ss_pred EecCCCCcccCcCCCCCCcE-----------------EEEcCCCCCHHHHHHHHhhhcCC---CCEEEEEe
Q 029910 105 VTDACLPLLSSGESAISARV-----------------LINYELPTKKETYIRRMTTCLAA---DGSVINIV 155 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~-----------------VI~~d~P~~~~~yiqR~GR~~~~---~g~~i~~v 155 (185)
||++ +++|+|+| +.. ||+++.|.+.++|+||+||+++. .|.++.+.
T Consensus 223 aT~v----~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 223 TTDI----SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ECGG----GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ECch----HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999 99999999 544 68899999999999999998543 34555554
No 67
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.66 E-value=3.8e-16 Score=150.36 Aligned_cols=126 Identities=16% Similarity=0.219 Sum_probs=99.8
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCc--------------------------------------
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-------------------------------------- 51 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~-------------------------------------- 51 (185)
.+..+++.+.. ....++||||++++.|+.++..|...+ +
T Consensus 323 ~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 323 TWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGIN-FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp HHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCC-CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 34455555333 345899999999999999999997765 3
Q ss_pred -eEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCC
Q 029910 52 -SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 130 (185)
Q Consensus 52 -~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~ 130 (185)
.+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|++ .||.+++
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G-----------------------~~kVLvAT~~----~a~GIDiP~~-~VVi~~~ 451 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKG-----------------------FIKVLFATET----FAMGLNLPTR-TVIFSSI 451 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTT-----------------------CCSEEEECTH----HHHSCCCCCS-EEEESCS
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCC-----------------------CCcEEEEchH----hhCCCCCCCc-eEEEecc
Confidence 378999999999999999999999 7999999999 9999999994 4555555
Q ss_pred CC---------CHHHHHHHHhhhcC----CCCEEEEEee--CchHHHHHHH
Q 029910 131 PT---------KKETYIRRMTTCLA----ADGSVINIVV--GGEVVTLRSM 166 (185)
Q Consensus 131 P~---------~~~~yiqR~GR~~~----~~g~~i~~v~--~~e~~~~~~l 166 (185)
|+ ++.+|+||+||+++ ..|.++.++. ..+...++.+
T Consensus 452 ~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 452 RKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp EEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 54 99999999999866 3477887773 2345555444
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=3.1e-14 Score=143.16 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=98.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC----C-----------------------------CceEEEEecCCCHHHHHHH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A-----------------------------DISFSSLHSDLAETERTLI 68 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~----~-----------------------------~~~~~~l~g~~~~~~R~~~ 68 (185)
..+.+++||||++++.|+.++..|... . ...++++||+|++.+|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 456689999999999999887766321 0 0237899999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----c------CCCCCHHHHH
Q 029910 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y------ELPTKKETYI 138 (185)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~----~------d~P~~~~~yi 138 (185)
.+.|++| .+++||||+. +++|+|+|...+||. | ..|.++.+|+
T Consensus 1232 E~lF~~G-----------------------~i~VLvaT~t----lA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1232 EQLFSSG-----------------------AIQVVVASRS----LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHT-----------------------SBCEEEEEGG----GSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHCC-----------------------CCeEEEEChH----HHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 9999999 7999999999 999999999999993 3 3467899999
Q ss_pred HHHhhhcCC----CCEEEEEeeCchHHHHHHH
Q 029910 139 RRMTTCLAA----DGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 139 qR~GR~~~~----~g~~i~~v~~~e~~~~~~l 166 (185)
||+||+|+. .|.|+.++.+.+...++.+
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred HhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 999998653 4899999998887766554
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.53 E-value=1.5e-14 Score=145.53 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=98.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC----C--------------------------------CceEEEEecCCCHHHH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A--------------------------------DISFSSLHSDLAETER 65 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~----~--------------------------------~~~~~~l~g~~~~~~R 65 (185)
...+.++||||++++.|+.++..|... + ...++++||+|++.+|
T Consensus 314 ~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 314 HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 455689999999999998888877531 0 0237899999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEE----cCC------CCCHH
Q 029910 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YEL------PTKKE 135 (185)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~----~d~------P~~~~ 135 (185)
..+.+.|++| .+++||||+. ++.|+|+|..++||. ||. |-++.
T Consensus 394 ~~vE~~F~~G-----------------------~i~vlvaTsT----La~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~ 446 (1724)
T 4f92_B 394 TLVEDLFADK-----------------------HIQVLVSTAT----LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGAL 446 (1724)
T ss_dssp HHHHHHHHTT-----------------------CCCEEEECHH----HHHHSCCCBSEEEEECCEEEETTTTEEEECCHH
T ss_pred HHHHHHHHCC-----------------------CCeEEEEcch----hHhhCCCCCceEEEeCCEEecCcCCCcccCCHH
Confidence 9999999999 7999999999 999999999999995 553 56899
Q ss_pred HHHHHHhhhcCC----CCEEEEEeeCchHHHHHHH
Q 029910 136 TYIRRMTTCLAA----DGSVINIVVGGEVVTLRSM 166 (185)
Q Consensus 136 ~yiqR~GR~~~~----~g~~i~~v~~~e~~~~~~l 166 (185)
+|.||+||||+. .|.++.++...+...+..+
T Consensus 447 ~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 447 DILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp HHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred HHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 999999998664 4899999988877665554
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.24 E-value=2.7e-11 Score=117.03 Aligned_cols=106 Identities=9% Similarity=0.131 Sum_probs=84.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC-----------CceE-EEEecC----------C----------CHH--------
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----------DISF-SSLHSD----------L----------AET-------- 63 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~-----------~~~~-~~l~g~----------~----------~~~-------- 63 (185)
.+.++||||+++..|..+++.|...+ .+++ ..+||+ + ++.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 45689999999999999999997642 1444 455542 2 221
Q ss_pred ---------------------HHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCcccCcCCCCCC
Q 029910 64 ---------------------ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 122 (185)
Q Consensus 64 ---------------------~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v 122 (185)
+|..++++|+++ ..++||+||+ +.+|+|+|.+
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-----------------------~i~ILIvvd~----lltGfDiP~l 668 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-----------------------DIDLLIVVGM----FLTGFDAPTL 668 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-----------------------SSSEEEESST----TSSSCCCTTE
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcC-----------------------CCeEEEEcch----HHhCcCcccc
Confidence 478899999998 7999999999 9999999999
Q ss_pred cEEEEcCCCCCHHHHHHHHhhhcC--C----CCEEEEEeeC
Q 029910 123 RVLINYELPTKKETYIRRMTTCLA--A----DGSVINIVVG 157 (185)
Q Consensus 123 ~~VI~~d~P~~~~~yiqR~GR~~~--~----~g~~i~~v~~ 157 (185)
.++++|.|.+...|+||+||++| . .|.++.|+..
T Consensus 669 -~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 669 -NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp -EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred -cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 67899999999999999999733 2 2778887753
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.38 E-value=1.4e-06 Score=78.44 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+.+.+..+.. . .+..++||++|...++.+++.|... ....+|.. .+|.+++++|+.+
T Consensus 370 ~~~~~~l~~~~~-~-~~g~~lvff~S~~~~~~v~~~l~~~----~~~~q~~~--~~~~~~l~~f~~~------------- 428 (540)
T 2vl7_A 370 PIYSILLKRIYE-N-SSKSVLVFFPSYEMLESVRIHLSGI----PVIEENKK--TRHEEVLELMKTG------------- 428 (540)
T ss_dssp HHHHHHHHHHHH-T-CSSEEEEEESCHHHHHHHHTTCTTS----CEEESTTT--CCHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEeCCHHHHHHHHHHhccC----ceEecCCC--CcHHHHHHHHhcC-------------
Confidence 446666666555 2 3468999999999999999988653 24556654 5788899999886
Q ss_pred CCCCCCCCCCceeEEE--EecCCCCcccCcCCCCC----CcEEEEcCCCC
Q 029910 89 DESETGKDEHKSHMIV--VTDACLPLLSSGESAIS----ARVLINYELPT 132 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV--~Td~~~~~~~~G~d~~~----v~~VI~~d~P~ 132 (185)
..+|+ +|+. +++|+|+|+ +++||++++|.
T Consensus 429 -----------~~il~~V~~~~----~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 429 -----------KYLVMLVMRAK----ESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp -----------CCEEEEEC-------------------CEEEEEEESCCC
T ss_pred -----------CeEEEEEecCc----eecceecCCCcccccEEEEECCCC
Confidence 24666 8899 999999998 89999999983
No 72
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.67 E-value=0.00062 Score=58.04 Aligned_cols=120 Identities=8% Similarity=0.089 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
|+..+-.||..+ ...+.+++||++..++.+-+-.++...+ +...-+.|.....+ .+. .+.
T Consensus 110 Kf~~L~~LL~~l---~~~~~kVLIfsq~t~~LDilE~~l~~~~-~~y~RlDG~~~~~~-~k~----~~~----------- 169 (328)
T 3hgt_A 110 KFSVLRDLINLV---QEYETETAIVCRPGRTMDLLEALLLGNK-VHIKRYDGHSIKSA-AAA----NDF----------- 169 (328)
T ss_dssp HHHHHHHHHHHH---TTSCEEEEEEECSTHHHHHHHHHHTTSS-CEEEESSSCCC------------CC-----------
T ss_pred cHHHHHHHHHHH---HhCCCEEEEEECChhHHHHHHHHHhcCC-CceEeCCCCchhhh-hhc----ccC-----------
Confidence 445555666654 3457899999999999999999999887 79999999854432 211 122
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCcccCcCC-----CCCCcEEEEcCCCCCHHH-HHHHHhhhc------CCCCEEEEE
Q 029910 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGES-----AISARVLINYELPTKKET-YIRRMTTCL------AADGSVINI 154 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~~G~d-----~~~v~~VI~~d~P~~~~~-yiqR~GR~~------~~~g~~i~~ 154 (185)
...+.+.|.. ..-|++ ...++.||-||.-||+.. .+|.+-|+. ++.-.++-+
T Consensus 170 ------------~~~i~Lltsa----g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RL 233 (328)
T 3hgt_A 170 ------------SCTVHLFSSE----GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRL 233 (328)
T ss_dssp ------------SEEEEEEESS----CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEE
T ss_pred ------------CceEEEEECC----CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEE
Confidence 3444444555 555665 789999999999998876 478766532 234578888
Q ss_pred eeCchHHH
Q 029910 155 VVGGEVVT 162 (185)
Q Consensus 155 v~~~e~~~ 162 (185)
++.+.++.
T Consensus 234 vt~~TiEh 241 (328)
T 3hgt_A 234 VAINSIDH 241 (328)
T ss_dssp EETTSHHH
T ss_pred eCCCCHHH
Confidence 88875544
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.37 E-value=0.00091 Score=63.95 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=35.6
Q ss_pred eEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHh
Q 029910 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS 46 (185)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~ 46 (185)
|+.++.++...+++.+......++|+||+|.|.+.++.|+..|.
T Consensus 421 vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 421 VYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 45566777777777766544678999999999999999999998
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.43 E-value=0.0066 Score=55.52 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=58.7
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
.+.+.+..+.. . .+..++||+++....+.+++.|...+ .+ ...+++..+|.+++++|+ +
T Consensus 435 ~~~~~i~~l~~-~-~~g~~lvlF~Sy~~l~~v~~~l~~~~-~~---~~q~~~~~~~~~ll~~f~-~-------------- 493 (620)
T 4a15_A 435 RMATVIEDIIL-K-VKKNTIVYFPSYSLMDRVENRVSFEH-MK---EYRGIDQKELYSMLKKFR-R-------------- 493 (620)
T ss_dssp HHHHHHHHHHH-H-HCSCEEEEESCHHHHHHHTSSCCSCC-EE---CCTTCCSHHHHHHHHHHT-T--------------
T ss_pred HHHHHHHHHHH-h-CCCCEEEEeCCHHHHHHHHHHHHhcc-hh---ccCCCChhHHHHHHHHhc-c--------------
Confidence 34455555443 2 23679999999999999999887322 22 566677789999999999 6
Q ss_pred CCCCCCCCCceeEEEEec--CCCCcccCcCCCCC--CcEEEEcCCCC
Q 029910 90 ESETGKDEHKSHMIVVTD--ACLPLLSSGESAIS--ARVLINYELPT 132 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td--~~~~~~~~G~d~~~--v~~VI~~d~P~ 132 (185)
...||+++. . +++|+|+|+ .+.||...+|-
T Consensus 494 ---------~~~vL~~v~~gs----f~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 494 ---------DHGTIFAVSGGR----LSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ---------SCCEEEEETTSC----C--------CCCCEEEESSCCC
T ss_pred ---------CCcEEEEEecCc----eeccccCCCCceEEEEEEcCCC
Confidence 577999984 7 899999998 44788877763
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.85 E-value=0.022 Score=53.58 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=67.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
+.+++|.++|+.-+.+.++.+... + +++..+||+++..+|.+.++...+| ..
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g-----------------------~~ 472 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNG-----------------------QI 472 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSS-----------------------CC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcC-----------------------CC
Confidence 579999999999888877776543 5 8999999999999999999999998 69
Q ss_pred eEEEEecCCCCcccCcCCCCCCcEEEEcCCCC
Q 029910 101 HMIVVTDACLPLLSSGESAISARVLINYELPT 132 (185)
Q Consensus 101 ~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~ 132 (185)
+|+|+|.. ++...+++.++.+||.=+...
T Consensus 473 ~IvVgT~~---ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 473 DVVIGTHA---LIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp CEEEECTT---HHHHCCCCSCCCEEEEESCCC
T ss_pred CEEEECHH---HHhhhhhccCCceEEecccch
Confidence 99999987 356678888999888655443
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.49 E-value=0.06 Score=45.63 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
..+.++||.++++.-+.++++.+.. .+ +++..++|+.+..++...++.+..+ .
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~l~~~-----------------------~ 117 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEK-VKIFGFYSSMKKEEKEKFEKSFEED-----------------------D 117 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSS-CCEEECCTTSCHHHHHHHHHHHHHT-----------------------C
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCC-ceEEEEECCCChhhHHHHHHHhhcC-----------------------C
Confidence 4568999999999999999999887 45 7999999999999999989999887 5
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCC
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYEL 130 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~ 130 (185)
.+|+|+|+-.+--.-+-++...+++||.=+.
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 8999999762100011245567888776443
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.63 E-value=0.15 Score=45.59 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
+.+.+.+..+.. . .+..++||+++....+.+++. .+ ..+..-..+++. .+.++.|+..
T Consensus 379 ~~l~~~i~~l~~-~-~~g~~lvlF~Sy~~l~~v~~~---~~-~~v~~q~~~~~~---~~~~~~~~~~------------- 436 (551)
T 3crv_A 379 KRYADYLLKIYF-Q-AKANVLVVFPSYEIMDRVMSR---IS-LPKYVESEDSSV---EDLYSAISAN------------- 436 (551)
T ss_dssp HHHHHHHHHHHH-H-CSSEEEEEESCHHHHHHHHTT---CC-SSEEECCSSCCH---HHHHHHTTSS-------------
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEecCHHHHHHHHHh---cC-CcEEEcCCCCCH---HHHHHHHHhc-------------
Confidence 455666666554 2 336899999999999988872 23 333333334553 4567778643
Q ss_pred CCCCCCCCCCceeEEEEe--cCCCCcccCcCCCC-----CCcEEEEcCCCC
Q 029910 89 DESETGKDEHKSHMIVVT--DACLPLLSSGESAI-----SARVLINYELPT 132 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~T--d~~~~~~~~G~d~~-----~v~~VI~~d~P~ 132 (185)
...||+++ .. +.+|+|+| ..+.||...+|-
T Consensus 437 ----------~~~vl~~v~gg~----~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 437 ----------NKVLIGSVGKGK----LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ----------SSCEEEEESSCC----SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ----------CCeEEEEEecce----ecccccccccCCcceeEEEEEcCCC
Confidence 24689998 57 89999999 467888776653
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.69 E-value=0.23 Score=48.41 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC--CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
..+.++||.++|+.-|.++++.+...+ ++++..+||+++..+|.+.++.++.+ ..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-----------------------~~ 175 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-----------------------DY 175 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-----------------------CC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-----------------------CC
Confidence 456899999999999999999998832 27999999999999999999999998 68
Q ss_pred eEEEEecCCC-CcccCcCCCCCCcEEEEcC
Q 029910 101 HMIVVTDACL-PLLSSGESAISARVLINYE 129 (185)
Q Consensus 101 ~iLV~Td~~~-~~~~~G~d~~~v~~VI~~d 129 (185)
+|+|+|+-.+ .++.+ ++..++++||.=+
T Consensus 176 ~IlV~Tp~rL~~~l~~-l~~~~l~~lViDE 204 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREK-LSQKRFDFVFVDD 204 (1104)
T ss_dssp SEEEEEHHHHHHSHHH-HHTSCCSEEEESC
T ss_pred CEEEECHHHHHHHHHh-hcccCcCEEEEeC
Confidence 9999997521 00111 4567788887644
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.13 E-value=0.59 Score=37.01 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=58.3
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
-++..+.. ...+.++||.|+++.-+.++++.+... + +.+..++|+.+..++...+ ..
T Consensus 100 ~il~~l~~-~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---~~-------------- 160 (249)
T 3ber_A 100 PILNALLE-TPQRLFALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLAL---AK-------------- 160 (249)
T ss_dssp HHHHHHHH-SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHH---HT--------------
T ss_pred HHHHHHhc-CCCCceEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHh---cC--------------
Confidence 34444444 445578999999999998888777554 5 7899999998876654332 23
Q ss_pred CCCCCCCCCCceeEEEEecCCC-Ccc--cCcCCCCCCcEEEEc
Q 029910 89 DESETGKDEHKSHMIVVTDACL-PLL--SSGESAISARVLINY 128 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~-~~~--~~G~d~~~v~~VI~~ 128 (185)
..+|+|+|+-.+ .++ ..++++..+++||.=
T Consensus 161 ----------~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 161 ----------KPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp ----------CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred ----------CCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 378999996410 001 145678888887753
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.59 E-value=0.44 Score=46.53 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
.+.+++|.|+|+.-+.+.++.+.. .+ +.+..++|..+..++.+.++....| .
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g-----------------------~ 706 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEG-----------------------K 706 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTT-----------------------C
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcC-----------------------C
Confidence 457999999999999888877763 24 7899999999999999999999998 6
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcC
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
.+|+|+|.. ++...+.+.++.+||.=+
T Consensus 707 ~dIvV~T~~---ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 707 IDILIGTHK---LLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CSEEEECTH---HHHSCCCCSSEEEEEEES
T ss_pred CCEEEECHH---HHhCCccccccceEEEec
Confidence 999999965 266678888888877533
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.76 E-value=0.68 Score=35.39 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=55.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
...++||.|+++.-+.++.+.+... +++++..++|+.+..++.+. +..+ .
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~-----------------------~ 134 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN-----------------------C 134 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHS-----------------------C
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcC-----------------------C
Confidence 3458999999999999888777654 14789999999887766544 3344 4
Q ss_pred eeEEEEecCCCC-cc-cCcCCCCCCcEEEEcC
Q 029910 100 SHMIVVTDACLP-LL-SSGESAISARVLINYE 129 (185)
Q Consensus 100 ~~iLV~Td~~~~-~~-~~G~d~~~v~~VI~~d 129 (185)
.+|+|+|.-.+- ++ ...+++..+++||.=+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 689999963100 01 2345778888877533
No 82
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.65 E-value=0.44 Score=42.26 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=45.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.++||.++++.-+......|...| +.+..++++.+..++...+..+..+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~ 114 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTREQQLEVMTGCRTG 114 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 689999999999999999999988 8999999999999999999999888
No 83
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.32 E-value=0.59 Score=36.27 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=57.1
Q ss_pred HHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCC----CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 029910 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (185)
Q Consensus 14 ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (185)
++..+.. ...+.++||.|+++.-+.++.+.+...+ ++.+..++|+.+..++.+.+ .
T Consensus 82 ~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~--------------- 141 (230)
T 2oxc_A 82 ALDSLVL-ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----K--------------- 141 (230)
T ss_dssp HHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----T---------------
T ss_pred HHHHHHh-cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----c---------------
Confidence 3444333 4456799999999999999888886542 37899999998877665432 1
Q ss_pred CCCCCCCCCceeEEEEecCCCC-cc-cCcCCCCCCcEEEE
Q 029910 90 ESETGKDEHKSHMIVVTDACLP-LL-SSGESAISARVLIN 127 (185)
Q Consensus 90 ~~~~~~~~~~~~iLV~Td~~~~-~~-~~G~d~~~v~~VI~ 127 (185)
..+|+|+|.-.+- ++ ...+++..+++||.
T Consensus 142 ---------~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 142 ---------KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp ---------SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ---------CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 3789999974100 01 23456677777775
No 84
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.44 E-value=0.52 Score=42.64 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=43.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHh
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 73 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~ 73 (185)
..++||.++++.-+......|...| +.+..++|+++..++..++..+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~l~ 131 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSKEHVKWVHAEMV 131 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHHHhh
Confidence 3689999999999999999999887 89999999999999999888884
No 85
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.21 E-value=0.68 Score=36.13 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=46.3
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
..+.++||.|+++.-+.++.+.+...+ .+.+..++|+.+.... .+.+..+ .
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-----------------------~ 149 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE-----------------------A 149 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C-----------------------C
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC-----------------------C
Confidence 356799999999999998888886542 2678888887654433 2333444 4
Q ss_pred eeEEEEecCCC-Cccc-CcCCCCCCcEEEE
Q 029910 100 SHMIVVTDACL-PLLS-SGESAISARVLIN 127 (185)
Q Consensus 100 ~~iLV~Td~~~-~~~~-~G~d~~~v~~VI~ 127 (185)
.+|+|+|+-.+ .++. ..+++..+++||.
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 78999994210 0022 3456777888775
No 86
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=90.14 E-value=4.6 Score=30.09 Aligned_cols=79 Identities=8% Similarity=0.167 Sum_probs=53.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
...+.++||.|+++.-+.++.+.+... +++.+..++|+.+..+... .+..
T Consensus 68 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~----------------------- 121 (206)
T 1vec_A 68 KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDD----------------------- 121 (206)
T ss_dssp TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTS-----------------------
T ss_pred cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCC-----------------------
Confidence 345578999999999999888877543 2478999999987765533 2233
Q ss_pred CceeEEEEecCCC-Ccc-cCcCCCCCCcEEEE
Q 029910 98 HKSHMIVVTDACL-PLL-SSGESAISARVLIN 127 (185)
Q Consensus 98 ~~~~iLV~Td~~~-~~~-~~G~d~~~v~~VI~ 127 (185)
..+|+|+|.-.+ .++ ....++..+++||.
T Consensus 122 -~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 122 -TVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp -CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred -CCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 478999997310 001 22346777888775
No 87
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=89.64 E-value=0.7 Score=31.94 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=33.9
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++|+||.+-..+...+..|...|+ .+..+.|++.
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~~ 90 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQ 90 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcHH
Confidence 35568999999999999999999999995 9999999843
No 88
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.31 E-value=1.5 Score=32.82 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=54.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC-CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~-~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
..+.++||.|+++.-+..+.+.+.... .+.+..++|+.+...+...+ .. ..+
T Consensus 70 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------~~~ 122 (207)
T 2gxq_A 70 GRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR------------------------GAD 122 (207)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH------------------------CCS
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC------------------------CCC
Confidence 346789999999999999999887652 36788999988766554333 23 377
Q ss_pred EEEEecCCC-Ccc-cCcCCCCCCcEEEE
Q 029910 102 MIVVTDACL-PLL-SSGESAISARVLIN 127 (185)
Q Consensus 102 iLV~Td~~~-~~~-~~G~d~~~v~~VI~ 127 (185)
|+|+|+-.+ .++ ...+++..+++||.
T Consensus 123 i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 123 AVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp EEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred EEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 999996310 001 23456778888775
No 89
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.30 E-value=1.2 Score=34.63 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=55.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
..+.++||.|+++.-+.++.+.+... + +.+..++|+.+..++...+ +.+
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---~~~----------------------- 152 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDL---ERG----------------------- 152 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH---HHC-----------------------
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHh---cCC-----------------------
Confidence 34678999999999999887776553 5 7899999998887765443 333
Q ss_pred ceeEEEEecCCC-Cccc-CcCCCCCCcEEEEc
Q 029910 99 KSHMIVVTDACL-PLLS-SGESAISARVLINY 128 (185)
Q Consensus 99 ~~~iLV~Td~~~-~~~~-~G~d~~~v~~VI~~ 128 (185)
.+|+|+|+-++ .++. ...++..+++||.=
T Consensus 153 -~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 153 -VEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp -CSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred -CCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 78999996310 0022 34577888887753
No 90
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=89.05 E-value=1.6 Score=28.42 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+.+.+..+ . ..+.+++|+||.+-..+...+..|...|+-.+..+ |++.
T Consensus 27 ~~l~~~~~~l-~-~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 27 KEVKERIATA-V-PDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHHH-C-CCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHHHh-C-CCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4445555553 1 24568999999998889999999999984456666 7643
No 91
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.00 E-value=1.1 Score=34.47 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=50.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC--CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
.+.++||.++++.-+.++.+.+... .++.+..++|+.+..++.. .+..+ .+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------~~ 145 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISKG------------------------VD 145 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHSC------------------------CS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcCC------------------------CC
Confidence 5688999999999999998888764 2378999999876655433 33343 78
Q ss_pred EEEEecCCCC--cccCcCCCCCCcEEEEc
Q 029910 102 MIVVTDACLP--LLSSGESAISARVLINY 128 (185)
Q Consensus 102 iLV~Td~~~~--~~~~G~d~~~v~~VI~~ 128 (185)
|+|+|+-++- +....+++..+++||.=
T Consensus 146 iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 174 (228)
T 3iuy_A 146 IIIATPGRLNDLQMNNSVNLRSITYLVID 174 (228)
T ss_dssp EEEECHHHHHHHHHTTCCCCTTCCEEEEC
T ss_pred EEEECHHHHHHHHHcCCcCcccceEEEEE
Confidence 9999963100 01235678888887753
No 92
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.58 E-value=1.5 Score=36.00 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
...+.++||.|+++.-+.++.+.+... +++.+..++|+.+..++...+ ..+
T Consensus 73 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~---------------------- 127 (391)
T 1xti_A 73 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN---------------------- 127 (391)
T ss_dssp CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHS----------------------
T ss_pred cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcC----------------------
Confidence 344579999999999999888777653 248899999998877665443 344
Q ss_pred CceeEEEEecCCCC--cccCcCCCCCCcEEEE
Q 029910 98 HKSHMIVVTDACLP--LLSSGESAISARVLIN 127 (185)
Q Consensus 98 ~~~~iLV~Td~~~~--~~~~G~d~~~v~~VI~ 127 (185)
..+|+|+|.-.+- +....+++..+++||.
T Consensus 128 -~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 128 -CPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp -CCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred -CCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 4689999964100 0123456778888775
No 93
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=87.45 E-value=1.4 Score=30.23 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..|.|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 455899999999989999999999998445888988843
No 94
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=87.44 E-value=0.62 Score=31.58 Aligned_cols=38 Identities=5% Similarity=0.093 Sum_probs=33.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||.+-..+...+..|...|+ ++..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccHH
Confidence 4568999999999999999999999995 9999998843
No 95
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=86.86 E-value=0.61 Score=31.76 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+.+++|+||.+-..+...+..|...|+ .+..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCC-CeEEeCCCH
Confidence 4568999999999889999999999995 999999884
No 96
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=86.83 E-value=0.59 Score=32.39 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+.+++++||.+-..+...+..|...| ++...+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G-~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANG-IDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTT-CEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcC-CCEEEecChH
Confidence 456899999999888999999999998 6888888874
No 97
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=86.65 E-value=0.62 Score=32.77 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=31.1
Q ss_pred CcEEEEc-CChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 26 LPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 26 ~~~IIF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
+++|||| .+-..+...+..|...|+ .+..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHH
Confidence 7999999 577888899999999995 99999998654
No 98
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=86.59 E-value=0.61 Score=33.29 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456899999999888999999999888435888999964
No 99
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=86.40 E-value=1.6 Score=33.31 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=46.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
...+.++||.|+++.-+.++.+.+... .++.+..++|+.+..++... + .
T Consensus 79 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~----------------------- 130 (224)
T 1qde_A 79 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--R----------------------- 130 (224)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--T-----------------------
T ss_pred cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--C-----------------------
Confidence 445679999999999998888877643 13788899998765544321 1 1
Q ss_pred ceeEEEEecCCC--CcccCcCCCCCCcEEEE
Q 029910 99 KSHMIVVTDACL--PLLSSGESAISARVLIN 127 (185)
Q Consensus 99 ~~~iLV~Td~~~--~~~~~G~d~~~v~~VI~ 127 (185)
..+|+|+|.-.+ .+.....++..+++||.
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 367999996410 00134556777888775
No 100
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=86.20 E-value=6.1 Score=26.83 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=47.7
Q ss_pred ecchHHHHHHHHHHHccCCCCCcEEEEcCCh--hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.+..+.+.++++.+ .++++|.+||+|.. ..+......-+..| ++-.++.+ .++++-.+-+++|-..
T Consensus 34 atssqdirdiiksm---kdngkplvvfvngasqndvnefqneakkeg-vsydvlks-tdpeeltqrvreflkt 101 (112)
T 2lnd_A 34 ATSSQDIRDIIKSM---KDNGKPLVVFVNGASQNDVNEFQNEAKKEG-VSYDVLKS-TDPEELTQRVREFLKT 101 (112)
T ss_dssp ECSHHHHHHHHHHH---TTCCSCEEEEECSCCHHHHHHHHHHHHHHT-CEEEEEEC-CCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHH---HhcCCeEEEEecCcccccHHHHHHHHHhcC-cchhhhcc-CCHHHHHHHHHHHHHh
Confidence 34567788888885 56789999999854 45556666666667 77777775 4667777777888664
No 101
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=85.98 E-value=0.75 Score=30.80 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+ +++|+||.+-..+...+..|...| +.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G-~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEG-YEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHT-CCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcC-CcEEEEcccHH
Confidence 34 899999999988999999999998 56888888864
No 102
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.62 E-value=0.71 Score=37.78 Aligned_cols=86 Identities=6% Similarity=0.015 Sum_probs=53.0
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.++..+.. ...+.++||.|+|+.-|.++...+... +.+.+..+.|+.+...+. ..
T Consensus 151 p~l~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~------------- 209 (300)
T 3fmo_B 151 AMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KI------------- 209 (300)
T ss_dssp HHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CC-------------
T ss_pred HHHHhhhc-cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cC-------------
Confidence 44554333 344558999999999998887776543 236777777765432221 11
Q ss_pred CCCCCCCCCCceeEEEEecCCC-Ccc-c-CcCCCCCCcEEEEcC
Q 029910 89 DESETGKDEHKSHMIVVTDACL-PLL-S-SGESAISARVLINYE 129 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~-~~~-~-~G~d~~~v~~VI~~d 129 (185)
..+|+|+|+-++ -++ . ..+++..+.++|.=+
T Consensus 210 ----------~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 210 ----------SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp ----------CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred ----------CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 468999997521 001 1 356788899888633
No 103
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.37 E-value=2.6 Score=32.46 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=51.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
..+.++||.|+++.-+.+..+.+...+ ++.+..++|+.+.......+ . .
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~-----------------------~ 146 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----N-----------------------N 146 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----T-----------------------T
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----C-----------------------C
Confidence 346789999999999998888886542 26889999987766554332 2 3
Q ss_pred eeEEEEecCCC-CcccC--cCCCCCCcEEEE
Q 029910 100 SHMIVVTDACL-PLLSS--GESAISARVLIN 127 (185)
Q Consensus 100 ~~iLV~Td~~~-~~~~~--G~d~~~v~~VI~ 127 (185)
.+|+|+|.-.+ .++.+ .++...+++||.
T Consensus 147 ~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 147 INILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 78999996411 00112 356777887775
No 104
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=85.36 E-value=1.5 Score=29.98 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 456899999999888999999999998445888999854
No 105
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=85.11 E-value=0.82 Score=35.59 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=53.1
Q ss_pred HHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCC
Q 029910 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (185)
Q Consensus 13 ~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (185)
.++..+......+.++||.+++++-+.++.+.+... + +.+..++|+.....+ +...
T Consensus 86 ~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~------------- 145 (245)
T 3dkp_A 86 PILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG-FRIHMIHKAAVAAKK------FGPK------------- 145 (245)
T ss_dssp HHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEECCCHHHHHHTT------TSTT-------------
T ss_pred HHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEecCccHHHH------hhhh-------------
Confidence 344443332345668999999999999888888654 4 667777765322111 1110
Q ss_pred CCCCCCCCCCceeEEEEecCCCC-cccC---cCCCCCCcEEEEcC
Q 029910 89 DESETGKDEHKSHMIVVTDACLP-LLSS---GESAISARVLINYE 129 (185)
Q Consensus 89 ~~~~~~~~~~~~~iLV~Td~~~~-~~~~---G~d~~~v~~VI~~d 129 (185)
.....+|+|+|+-.+- ++.+ .+++.++++||.=+
T Consensus 146 -------~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 146 -------SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp -------SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred -------hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 0125789999954110 0112 46888888887633
No 106
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.54 E-value=4.3 Score=32.13 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
.+.++||.++++.-+.+..+.++... .+.+..++|+.+...+... +..+ .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~------------------------~ 177 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG------------------------I 177 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC------------------------C
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC------------------------C
Confidence 46789999999999998888876531 2678889998876665433 3343 7
Q ss_pred eEEEEecCCCC-cc--cCcCCCCCCcEEEE
Q 029910 101 HMIVVTDACLP-LL--SSGESAISARVLIN 127 (185)
Q Consensus 101 ~iLV~Td~~~~-~~--~~G~d~~~v~~VI~ 127 (185)
+|+|+|+-.+- ++ ..++++..+++||.
T Consensus 178 ~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp SEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred CEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 89999952100 01 22467788888775
No 107
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=83.83 E-value=5.2 Score=28.80 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=43.0
Q ss_pred cEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 27 PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 27 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
-.+||.+...-...+...++..| +.+..++++.....|.+-++.|...
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHHHHHHHHHHHHc
Confidence 35789888888899999999998 8999999999999999999999775
No 108
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=83.43 E-value=1.7 Score=29.94 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-. ..|.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence 456899999999999999999999998444 88889854
No 109
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.17 E-value=5.2 Score=31.05 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+.++||.|++++-+.++.+.+... ..+.+..++|+.+..++... ... ..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~------------------------~~~ 152 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQM------------------------GCH 152 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HSS------------------------CCS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hCC------------------------CCC
Confidence 468999999999999888777543 12678889998876655433 233 378
Q ss_pred EEEEecCCCC-cc-cCcCCCCCCcEEEE
Q 029910 102 MIVVTDACLP-LL-SSGESAISARVLIN 127 (185)
Q Consensus 102 iLV~Td~~~~-~~-~~G~d~~~v~~VI~ 127 (185)
|+|+|.-.+- ++ ...+++..+++||.
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 9999974210 01 22357778888775
No 110
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=82.92 E-value=4.7 Score=32.95 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=36.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l 69 (185)
...+.++||.|+++.-+.+..+.+... .++.+..++|+.+..++...+
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc
Confidence 345679999999999998888777542 137899999998877665543
No 111
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=82.74 E-value=1.4 Score=32.08 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999999888889999999998446999999874
No 112
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=82.73 E-value=3.6 Score=35.09 Aligned_cols=89 Identities=8% Similarity=0.118 Sum_probs=58.4
Q ss_pred HHHHHHHHccC----CCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhccccccccccc
Q 029910 12 VELLHLVVAGR----RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (185)
Q Consensus 12 ~~ll~~l~~~~----~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (185)
+-++..+.... ..+.++||.|+|++-+.++.+.+...+ .+++..++|+.+..++... ...+
T Consensus 112 lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~--------- 179 (434)
T 2db3_A 112 LPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---ITRG--------- 179 (434)
T ss_dssp HHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HTTC---------
T ss_pred HHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hhcC---------
Confidence 34555544421 235799999999999999988776532 3788899999887765433 3333
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCC-CcccC-cCCCCCCcEEEE
Q 029910 85 EQSGDESETGKDEHKSHMIVVTDACL-PLLSS-GESAISARVLIN 127 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~iLV~Td~~~-~~~~~-G~d~~~v~~VI~ 127 (185)
.+|+|+|+-++ .++.+ .+++..+++||.
T Consensus 180 ---------------~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 180 ---------------CHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp ---------------CSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred ---------------CCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 78999996421 00122 346778888774
No 113
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.72 E-value=5.1 Score=33.01 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
..+.++||.|+++.-+.+..+.+.... ++.+..++|+.+..+.... .. + .
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~-----------------------~ 139 (400)
T 1s2m_A 87 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---LN-E-----------------------T 139 (400)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---TT-S-----------------------C
T ss_pred cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---hc-C-----------------------C
Confidence 355789999999999988888776531 3788999998876554322 22 2 4
Q ss_pred eeEEEEecCCC-Ccc-cCcCCCCCCcEEEEcC
Q 029910 100 SHMIVVTDACL-PLL-SSGESAISARVLINYE 129 (185)
Q Consensus 100 ~~iLV~Td~~~-~~~-~~G~d~~~v~~VI~~d 129 (185)
.+|+|+|.-.+ .++ ....++.++++||.=+
T Consensus 140 ~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 140 VHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred CCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 78999995310 002 2345677788877533
No 114
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=82.68 E-value=1.6 Score=31.78 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=33.0
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++||||.+-..+...+..|...|+-.+..|.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3456889999999999999999999998545888988843
No 115
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.21 E-value=2.3 Score=36.61 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
+.++||.|+++.-+....+.+... + +.+..++|+.+...+... +..+ .
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~---~~~~------------------------~ 103 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG-YNIASISGATSDSVSVQH---IIED------------------------N 103 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSCHHH---HHHH------------------------C
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC-cEEEEEcCCCcchhhHHH---HhcC------------------------C
Confidence 689999999999888877777654 5 899999999876655332 2233 6
Q ss_pred eEEEEecCCCC-cccCc-C-CCCCCcEEEEc
Q 029910 101 HMIVVTDACLP-LLSSG-E-SAISARVLINY 128 (185)
Q Consensus 101 ~iLV~Td~~~~-~~~~G-~-d~~~v~~VI~~ 128 (185)
+|+|+|.-.+- ++.++ + .+..+++||.=
T Consensus 104 ~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 134 (555)
T 3tbk_A 104 DIIILTPQILVNNLNNGAIPSLSVFTLMIFD 134 (555)
T ss_dssp SEEEECHHHHHHHHHTSSSCCGGGCSEEEET
T ss_pred CEEEECHHHHHHHHhcCcccccccCCEEEEE
Confidence 79999864100 01122 3 56667877753
No 116
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=82.08 E-value=1.5 Score=31.00 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=32.0
Q ss_pred CCCCCcEEEEcCChhh--HHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDE--LDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~--~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++||||.+-.. +...+..|...| +++..|.|++.
T Consensus 68 l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G-~~v~~l~GG~~ 108 (124)
T 3flh_A 68 LDPAKTYVVYDWTGGTTLGKTALLVLLSAG-FEAYELAGALE 108 (124)
T ss_dssp SCTTSEEEEECSSSSCSHHHHHHHHHHHHT-CEEEEETTHHH
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHHHHcC-CeEEEeCCcHH
Confidence 4456899999998776 788999999998 58888888853
No 117
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=81.10 E-value=1.2 Score=34.02 Aligned_cols=79 Identities=10% Similarity=0.202 Sum_probs=49.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC-------CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~-------~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (185)
...+.++||.|+++.-+.++.+.+.... .+.+..++|+.+..++.+ .+..
T Consensus 69 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-------------------- 125 (219)
T 1q0u_A 69 ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KLNV-------------------- 125 (219)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CCSS--------------------
T ss_pred CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---HcCC--------------------
Confidence 3346789999999999988887765431 367888888865433211 1111
Q ss_pred CCCCceeEEEEecCCCC-ccc-CcCCCCCCcEEEE
Q 029910 95 KDEHKSHMIVVTDACLP-LLS-SGESAISARVLIN 127 (185)
Q Consensus 95 ~~~~~~~iLV~Td~~~~-~~~-~G~d~~~v~~VI~ 127 (185)
..+|+|+|.-.+- ++. ..+++..+++||.
T Consensus 126 ----~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 126 ----QPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp ----CCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred ----CCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 4679999963100 022 2456677787775
No 118
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=80.95 E-value=1.3 Score=32.02 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=33.4
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++||||.+-..+...+..|...|+-.+..|.|++.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3456899999999888999999999998446889999953
No 119
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.75 E-value=5.3 Score=33.07 Aligned_cols=78 Identities=9% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
..+.++||.|+++.-+.++.+.+...+ .+.+..++|+.+..++...+ ..+
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~------------------------ 155 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DYG------------------------ 155 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HHC------------------------
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---hcC------------------------
Confidence 456899999999999998888776432 37888999998877665433 333
Q ss_pred eeEEEEecCCC-Cccc-CcCCCCCCcEEEE
Q 029910 100 SHMIVVTDACL-PLLS-SGESAISARVLIN 127 (185)
Q Consensus 100 ~~iLV~Td~~~-~~~~-~G~d~~~v~~VI~ 127 (185)
.+|+|+|.-.+ .++. ..++...+++||.
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 67899995210 0022 3456677777774
No 120
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=80.55 E-value=1.5 Score=31.45 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++|+||.+-..+...+..|...|+-.+..+.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456899999999989999999999998445888888853
No 121
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=80.09 E-value=1.6 Score=31.83 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCCh--hhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+- ..+...+..|...| +++..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G-~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLG-FRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTT-CEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCC-CeEEEeCCcHH
Confidence 4568999999987 57889999999999 58999999853
No 122
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=79.74 E-value=3.2 Score=33.15 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAET 63 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~ 63 (185)
.+.+++|+||.+-.++...+..|...|+-.+..+.|++..=
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 45689999999988899999999999844689999998643
No 123
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.29 E-value=3.6 Score=35.46 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=48.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
+.++||.|+++.-+....+.+... + +.+..++|+.+...+... +.. ..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~---~~~------------------------~~ 106 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEK---VIE------------------------DS 106 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEECCCC-----CHHH---HHH------------------------HC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCcchhHHH---hhC------------------------CC
Confidence 689999999999888888777654 5 899999999876655332 223 36
Q ss_pred eEEEEecCCCC-cccCc-C-CCCCCcEEEEc
Q 029910 101 HMIVVTDACLP-LLSSG-E-SAISARVLINY 128 (185)
Q Consensus 101 ~iLV~Td~~~~-~~~~G-~-d~~~v~~VI~~ 128 (185)
+|+|+|.-.+- ++.++ + .+..+++||.=
T Consensus 107 ~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 107 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp SEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred CEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 79999965200 01122 3 67778887753
No 124
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=79.26 E-value=1.2 Score=31.79 Aligned_cols=39 Identities=3% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..|.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 345899999999888889999999998445999999853
No 125
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.16 E-value=9 Score=31.59 Aligned_cols=75 Identities=9% Similarity=0.108 Sum_probs=51.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.++||.++++.-+.++++.+... .++.+..++|+.+..+... .+.. ..+|
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~~I 154 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER------------------------GCHL 154 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT------------------------CCSE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC------------------------CCCE
Confidence 67999999999999888887642 2378999999988766543 3333 3789
Q ss_pred EEEecCCCC-cc-cCcCCCCCCcEEEE
Q 029910 103 IVVTDACLP-LL-SSGESAISARVLIN 127 (185)
Q Consensus 103 LV~Td~~~~-~~-~~G~d~~~v~~VI~ 127 (185)
+|+|+-.+- ++ ...+++..+++||.
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 999973100 01 22356777887775
No 126
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=78.53 E-value=2.4 Score=30.22 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=32.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.+++||||.+-..+...+..|...|+-.+..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 345899999999888888899999888446888999974
No 127
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=78.07 E-value=4.9 Score=38.20 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 67 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~ 67 (185)
.++.-+|-.+.. ...+.+++|-|+|+.-|.+.++++.. .| +++..+.|+++...|..
T Consensus 100 KTlaf~LP~l~~-~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~~ 160 (853)
T 2fsf_A 100 KTLTATLPAYLN-ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKRE 160 (853)
T ss_dssp HHHHHHHHHHHH-HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHH
Confidence 344444443332 23457999999999999887777654 36 89999999999876554
No 128
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=76.25 E-value=6.8 Score=37.16 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~ 68 (185)
.++.-+|-.++. ...+.+++|.|+|+.-|.+.++++.. .| +++.++.|+++.++|...
T Consensus 109 KTlaf~LP~~l~-aL~g~~vlVltptreLA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~~ 170 (844)
T 1tf5_A 109 KTLTSTLPVYLN-ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKREA 170 (844)
T ss_dssp HHHHHHHHHHHH-HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh
Confidence 344444443332 23467999999999999988877654 36 899999999998876543
No 129
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=75.90 E-value=5.5 Score=36.86 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=47.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
+.++||.|+++..+......+... + +.+..+||+.+...+... +.. ..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~---~~~------------------------~~ 347 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEK---VIE------------------------DS 347 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECCC-----CHHH---HHH------------------------TC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCC-ceEEEEeCCcchhhhHHH---hhC------------------------CC
Confidence 689999999999988877777654 5 899999999876665332 223 37
Q ss_pred eEEEEecCCCC-cccC-cC-CCCCCcEEEE
Q 029910 101 HMIVVTDACLP-LLSS-GE-SAISARVLIN 127 (185)
Q Consensus 101 ~iLV~Td~~~~-~~~~-G~-d~~~v~~VI~ 127 (185)
+|+|+|.-.+- ++.+ .+ .+..+++||.
T Consensus 348 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 79999954100 0112 22 5666788775
No 130
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.52 E-value=6.9 Score=32.42 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCc---eEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~---~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
.+.++||.|+++.-+....+.+....+. .+..+||+.+..++.... . ..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~------------------------~~ 102 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW----A------------------------RA 102 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH----H------------------------HC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc----c------------------------CC
Confidence 4589999999999999888888765224 899999999888765432 1 26
Q ss_pred eEEEEecCCCC--cccCcCCCCCCcEEEEc
Q 029910 101 HMIVVTDACLP--LLSSGESAISARVLINY 128 (185)
Q Consensus 101 ~iLV~Td~~~~--~~~~G~d~~~v~~VI~~ 128 (185)
+|+|+|.-.+- +....+.....++||.=
T Consensus 103 ~ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 132 (494)
T 1wp9_A 103 KVIVATPQTIENDLLAGRISLEDVSLIVFD 132 (494)
T ss_dssp SEEEECHHHHHHHHHTTSCCTTSCSEEEEE
T ss_pred CEEEecHHHHHHHHhcCCcchhhceEEEEE
Confidence 78888853100 01123566777777753
No 131
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=75.04 E-value=3.3 Score=34.23 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=52.4
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
...+.++||.|+++.-+.++.+.+...+ ...+..++|+.+...+ .+....+
T Consensus 105 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------------- 158 (414)
T 3eiq_A 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME----------------------- 158 (414)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT-----------------------
T ss_pred cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC-----------------------
Confidence 3456899999999999988888876542 2677778887665544 3444444
Q ss_pred ceeEEEEecCCC-Ccc-cCcCCCCCCcEEEE
Q 029910 99 KSHMIVVTDACL-PLL-SSGESAISARVLIN 127 (185)
Q Consensus 99 ~~~iLV~Td~~~-~~~-~~G~d~~~v~~VI~ 127 (185)
..+|+|+|+-.+ .++ ...++...+++||.
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 578999995310 001 23345666777765
No 132
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=74.50 E-value=7.3 Score=30.90 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc-CCCceEEEEecCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 60 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~l~g~~ 60 (185)
+.+...+..+ . -.+.+++|+||.+-..+...+..|.. .|+-.+..+.|++
T Consensus 212 ~~l~~~~~~~-~-~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 212 EELAKLYADA-G-LDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHH-T-CCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHc-C-CCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 3455555542 2 34568999999998888888889985 7844588999884
No 133
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.53 E-value=3.7 Score=39.67 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCC---Cc----eEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DI----SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~----~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (185)
.+.++||.++|+.-+.++++.+...+ ++ .+..++|+.+..++.+..+.+++
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---------------------- 155 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---------------------- 155 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----------------------
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----------------------
Confidence 45799999999999998888876431 25 79999999999888766665544
Q ss_pred CCceeEEEEecCCCCcccCcC-CCCCCcEEEE
Q 029910 97 EHKSHMIVVTDACLPLLSSGE-SAISARVLIN 127 (185)
Q Consensus 97 ~~~~~iLV~Td~~~~~~~~G~-d~~~v~~VI~ 127 (185)
.+|+|+|+-. +..-+ .+..+++||.
T Consensus 156 ---~~IlV~TP~~---L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 ---FKIVITTTQF---LSKHYRELGHFDFIFV 181 (1054)
T ss_dssp ---CSEEEEEHHH---HHHCSTTSCCCSEEEE
T ss_pred ---CCEEEEcHHH---HHHHHHHhccCCEEEE
Confidence 5689999742 21111 1557777775
No 134
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=72.26 E-value=4.1 Score=33.18 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=34.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+++|+||.+-..+...+..|...|+-.+..|.|++..
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 5568999999999999999999999985468899998654
No 135
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=71.11 E-value=3.4 Score=32.81 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=32.5
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
-.+.+++|+||.+-..+...+..|...|+-.+..+.|++
T Consensus 220 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 220 ITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 356689999999988889999999999844588888875
No 136
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=70.86 E-value=2.2 Score=29.57 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC------CCceEEEEecCCCH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAE 62 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~l~g~~~~ 62 (185)
.+++||||.+-..+...+..|... |+..+..|.|++..
T Consensus 72 ~~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 72 AVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 349999999988888888888877 55678899998543
No 137
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=70.72 E-value=9.4 Score=36.57 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~ 68 (185)
.++.-.|-.++. ...+.+++|-|+|+.-|.+.++++.. .| +++.++.|+++.++|...
T Consensus 137 KTLa~~LP~~l~-aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~~ 198 (922)
T 1nkt_A 137 KTLTCVLPAYLN-ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRVA 198 (922)
T ss_dssp HHHHTHHHHHHH-HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH
T ss_pred cHHHHHHHHHHH-HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh
Confidence 344444443332 23457999999999999887777654 46 899999999998776543
No 138
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=70.07 E-value=11 Score=36.31 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc----CCCceEEEEecCCCHHHHHHH
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~l~g~~~~~~R~~~ 68 (185)
.++.-.+-.++. ...+.+++|-|+|+.-|.+.++++.. .| +++..+.|+++..+|...
T Consensus 105 KTLvf~Lp~~L~-aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 105 KTLVATLAVALN-ALTGKGVHVVTVNDYLARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKA 166 (997)
T ss_dssp HHHHHHHHHHHH-HTTCSCCEEEESSHHHHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHH
Confidence 445555544333 23467999999999988887776643 46 899999999998877765
No 139
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=69.59 E-value=5.3 Score=32.25 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
...+++|+||.+-.++...+..|...|+-.+..+.|++..
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 277 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFE 277 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 4568999999998888888889998884358888888543
No 140
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=68.80 E-value=7.5 Score=33.21 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+.+.+..+ . -.+.+++|+||.+-.++...+..|...|.-.+..+.|+++.
T Consensus 188 ~~~l~~~~~~~-g-i~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 188 DEQLKAMLAKH-G-IRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp HHHHHHHHHHT-T-CCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred HHHHHHHHHHc-C-CCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 34444455441 1 34568999999998899999999998884468899998543
No 141
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=68.80 E-value=7.5 Score=30.97 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHh-cCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~l~g~~ 60 (185)
.+.+++||||.+-..+...+..|. ..|+-.+..+.|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 456899999999888888999998 88844688999984
No 142
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=68.77 E-value=22 Score=25.60 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=33.8
Q ss_pred CcEEEEcC------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHH
Q 029910 26 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 26 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
.+++||+. ++-.|..+...|...+ +....+.-+.++..+....+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~g-v~y~~vdI~~d~~~~~~L~~ 84 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACG-ERFAYVDILQNPDIRAELPK 84 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTC-SCCEEEEGGGCHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcC-CceEEEECCCCHHHHHHHHH
Confidence 68999987 6888999999999988 78777776666655554443
No 143
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.24 E-value=29 Score=27.59 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=51.1
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
.++.++||.|+++.-+.++++.+... ..+.+..++|+.+..++...+ . .
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~-------------------------~ 123 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K-------------------------N 123 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H-------------------------T
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C-------------------------C
Confidence 45689999999999988888887653 126888999988776554333 2 2
Q ss_pred eeEEEEecCCCC--cccCcCCCCCCcEEEE
Q 029910 100 SHMIVVTDACLP--LLSSGESAISARVLIN 127 (185)
Q Consensus 100 ~~iLV~Td~~~~--~~~~G~d~~~v~~VI~ 127 (185)
.+|+|+|.-.+- +....+++..+++||.
T Consensus 124 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 124 ANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 678898864100 0112345677777775
No 144
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=67.99 E-value=25 Score=23.83 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHHHccCCCCCcEEEEcC------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHH
Q 029910 12 VELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 69 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l 69 (185)
.+.++.+++ ..+++||.. .+-.|....+.|...+ +....+.=+..+..+....
T Consensus 8 ~~~v~~~i~----~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~g-i~~~~~dI~~~~~~~~~l~ 66 (109)
T 3ipz_A 8 KDTLEKLVN----SEKVVLFMKGTRDFPMCGFSNTVVQILKNLN-VPFEDVNILENEMLRQGLK 66 (109)
T ss_dssp HHHHHHHHT----SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHHH
T ss_pred HHHHHHHHc----cCCEEEEEecCCCCCCChhHHHHHHHHHHcC-CCcEEEECCCCHHHHHHHH
Confidence 344454443 378999997 5899999999999987 7777666544555444433
No 145
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=67.96 E-value=4.9 Score=29.39 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=29.5
Q ss_pred CCcEEEEcCCh---------hhHHHHHHHHhcCCCceEEEEecCC
Q 029910 25 GLPMIVCCSSR---------DELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 25 ~~~~IIF~~~~---------~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+++||||.+- ..+..++..|...| +.+..|.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G-~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREG-KEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTT-CCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCC-CcEEEeCCcH
Confidence 58999999987 35788899999988 5899999983
No 146
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=67.56 E-value=3.6 Score=31.97 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=33.8
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++|+||.+-..+...+..|...| ..+..+.|++.
T Consensus 181 ~~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~ 219 (230)
T 2eg4_A 181 LQPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMH 219 (230)
T ss_dssp CCTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHH
T ss_pred CCCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHH
Confidence 3456899999999999999999999998 78999999854
No 147
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=66.36 E-value=9.2 Score=31.41 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChh-hHHHHHHHHhcCCCceEEEEecCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
+.+...+..+ . -.+.+++||||.+-. .+...+..|...|+-++..|.|++
T Consensus 97 ~~~~~~l~~l-g-i~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 97 EQFAELMDRK-G-IARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHHT-T-CCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHc-C-CCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 4455555552 1 345689999998765 788889999999854689999985
No 148
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=66.36 E-value=34 Score=30.05 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=49.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC-------CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~-------~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
..++||.++++.-+.++++.+... ..+.+..+.|+.+.... ++.+..+
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~---------------------- 149 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL---------------------- 149 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH----------------------
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcC----------------------
Confidence 458999999999999888887652 12567788888665544 4444444
Q ss_pred CceeEEEEecCCCC-cccC--cCCCCCCcEEEE
Q 029910 98 HKSHMIVVTDACLP-LLSS--GESAISARVLIN 127 (185)
Q Consensus 98 ~~~~iLV~Td~~~~-~~~~--G~d~~~v~~VI~ 127 (185)
..+|+|+|+-.+- ++.+ ...+..+++||.
T Consensus 150 -~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 150 -RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp -CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 4789999964210 0111 335666777664
No 149
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=66.13 E-value=7.6 Score=30.90 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhh-HHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDE-LDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~-~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+...+..+ . -.+.+++||||.+-.. +..++..|...|+-.+..|.|++.
T Consensus 72 ~~~~~~~~~~-g-i~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 72 ETFAVAMREL-G-VNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp HHHHHHHHHT-T-CCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHHc-C-CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 4455555552 1 2456899999998665 888899999998547899999843
No 150
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=65.63 E-value=22 Score=28.05 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC---CCceEEEEecCCCHHHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERT 66 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~l~g~~~~~~R~ 66 (185)
+.++||.|+++.-+.+.++.+... .++.+..++|+.+..++.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQI 100 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHH
Confidence 479999999999999988888743 137899999998876654
No 151
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=65.62 E-value=23 Score=24.28 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=36.3
Q ss_pred HHHHHHHHccCCCCCcEEEEc------CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHH
Q 029910 12 VELLHLVVAGRRPGLPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~------~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~ 68 (185)
...++.+++ ..+++||. +++-.|....+.|...| +....+.=+.++..|...
T Consensus 6 ~~~v~~~i~----~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~g-i~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 6 NLRLKKLTH----AAPCMLFMKGTPQEPRCGFSKQMVEILHKHN-IQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp HHHHHHHHT----SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHHHh----cCCEEEEEecCCCCCcchhHHHHHHHHHHcC-CCeEEEECcCCHHHHHHH
Confidence 344444443 37999999 47888999999999987 777777655555554443
No 152
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=65.32 E-value=26 Score=26.71 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=73.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
..+.++.++.....+...+.....+ ..+....+++ ++-....++. .. ..+++|
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~-~~i~i~~~~l--~~~v~~a~~~-~~-----------------------~~dVII 56 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKN-FIPITKTASL--TRASKIAFGL-QD-----------------------EVDAII 56 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHT-CEEEEEECCH--HHHHHHHHHH-TT-----------------------TCSEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhC-CceEEEECCH--HHHHHHHHHh-cC-----------------------CCeEEE
Confidence 3678888888777775555555555 5677777774 4444555555 43 578999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEeeCchHHHHHHHHHHhCCcccccc
Q 029910 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIVAEVP 178 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~ 178 (185)
+-..-+.++.+-+++|-+ ++|.|..++++-+-++.+..+..-.+-.++-...++.+.+.++..+....
T Consensus 57 SRGgta~~lr~~~~iPVV------~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~ 124 (196)
T 2q5c_A 57 SRGATSDYIKKSVSIPSI------SIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFL 124 (196)
T ss_dssp EEHHHHHHHHTTCSSCEE------EECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEE
T ss_pred ECChHHHHHHHhCCCCEE------EEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEE
Confidence 865422234555565532 56788889988887663333332222234444556778888887766443
No 153
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=65.18 E-value=12 Score=29.64 Aligned_cols=50 Identities=8% Similarity=-0.125 Sum_probs=35.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCCh-hhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~-~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+...+..+ . -.+.+++||||.+- ..+...+..|...|+-.+..|.|++.
T Consensus 64 ~~~~~~~~~-g-i~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 64 QFSKLLSER-G-IANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp HHHHHHHHH-T-CCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred HHHHHHHHc-C-CCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 455555542 2 34558899999874 45778888898888447889999843
No 154
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=64.80 E-value=5.4 Score=32.56 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+.+++... . -.+.+++|+||.+-.++...+..|...|+-.+..+.|++..
T Consensus 239 ~~~l~~~~~~~-~-~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 239 PEEIRHLFQEK-K-VDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHHHHT-T-CCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHHHHhc-C-CCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 34455555541 2 34568999999998888888888988884467888887543
No 155
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=64.77 E-value=13 Score=33.32 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=50.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.++||.++++..+....+.+.... ++.+..++|+.+...+...+ .. ..+|
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~------------------------~~~I 114 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE------------------------NNDI 114 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH------------------------TCSE
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc------------------------CCCE
Confidence 789999999988888877776542 38999999998655443322 22 3779
Q ss_pred EEEecCCC-CcccCc-C-CCCCCcEEEEcC
Q 029910 103 IVVTDACL-PLLSSG-E-SAISARVLINYE 129 (185)
Q Consensus 103 LV~Td~~~-~~~~~G-~-d~~~v~~VI~~d 129 (185)
+|+|+-.+ .++.++ + ++.++++||.=+
T Consensus 115 iv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 115 IILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp EEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred EEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 99996410 001222 3 566778777533
No 156
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=63.83 E-value=11 Score=29.79 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChh-hHHHHHHHHhcCCCceEEEEecCCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
+.+...+..+ . -.+.+++||||.+-. .+..++..|...|+-.+..|.|++.
T Consensus 67 ~~~~~~~~~~-g-i~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 67 EQLESLFGEL-G-HRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp HHHHHHHHHH-T-CCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred HHHHHHHHHc-C-CCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3445555553 1 245689999998765 7788889999998546888999843
No 157
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=63.52 E-value=42 Score=29.05 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC-------CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~-------~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
..++||.++++.-+.++++.+... ....+..+.|+.+.... ++.+..+
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~---------------------- 200 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL---------------------- 200 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH----------------------
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcC----------------------
Confidence 358999999999999988888652 12457788888665544 3444444
Q ss_pred CceeEEEEecCCCC-cccC--cCCCCCCcEEEE
Q 029910 98 HKSHMIVVTDACLP-LLSS--GESAISARVLIN 127 (185)
Q Consensus 98 ~~~~iLV~Td~~~~-~~~~--G~d~~~v~~VI~ 127 (185)
..+|+|+|+-.+- ++.+ ...+..+++||.
T Consensus 201 -~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 201 -RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp -CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred -CCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 4789999975100 0111 234566777664
No 158
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=63.46 E-value=28 Score=23.16 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHccCCCCCcEEEEc------CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 11 LVELLHLVVAGRRPGLPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 11 l~~ll~~l~~~~~~~~~~IIF~------~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
..+.+..+++ ..+++||. +++-.|..+...|...+ +....+.-+.++..+....+.+
T Consensus 6 ~~~~~~~~i~----~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~-i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 6 LEERLKVLTN----KASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp HHHHHHHHHT----SSSEEEEESBCSSSBCTTHHHHHHHHHHHHT-CCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc----cCCEEEEEecCCCCCCCccHHHHHHHHHHCC-CCeEEEECCCCHHHHHHHHHHH
Confidence 3344454443 25799998 46788999999998887 7877777666666555554444
No 159
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=60.86 E-value=8.2 Score=36.65 Aligned_cols=41 Identities=2% Similarity=-0.011 Sum_probs=29.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERT 66 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~ 66 (185)
+.++||.|+++..+......+... + +.+..+||+.+...+.
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~G~~~~~~~~ 340 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSV 340 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECCC-----CC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEECCcchhhHH
Confidence 689999999999888877777654 5 8999999998766543
No 160
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=60.41 E-value=40 Score=23.48 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=31.6
Q ss_pred CcEEEEcC------ChhhHHHHHHHHhcCCCce-EEEEecCCCHHHHHHH
Q 029910 26 LPMIVCCS------SRDELDAVCSAVSNLADIS-FSSLHSDLAETERTLI 68 (185)
Q Consensus 26 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~-~~~l~g~~~~~~R~~~ 68 (185)
.+++||.. ++--|....+.|...+ +. ...+.=+..++.+...
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~vdV~~d~~~~~~l 68 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHG-VRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCCEEEESSSCHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcC-CCCCEEEEcCCCHHHHHHH
Confidence 79999988 5888999999999987 74 6666655555555443
No 161
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=60.35 E-value=9.6 Score=30.34 Aligned_cols=50 Identities=2% Similarity=-0.039 Sum_probs=35.2
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChh-hHHHHHHHHhcCCCceEEEEecCCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+...+..+ . -.+.+++||||.+-. .+...+..|...|+-.+..|.|++.
T Consensus 66 ~~~~~~~~~-g-i~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 66 EFAKLMERL-G-ISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp HHHHHHHHT-T-CCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHc-C-CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 344444442 1 345689999998865 5778888899888546889998853
No 162
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=58.14 E-value=7.7 Score=28.77 Aligned_cols=40 Identities=10% Similarity=-0.094 Sum_probs=26.3
Q ss_pred CCCcEEEEcCChhhHHH-HHHHHhc---CCCceEEEEecCCCHHH
Q 029910 24 PGLPMIVCCSSRDELDA-VCSAVSN---LADISFSSLHSDLAETE 64 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~-l~~~L~~---~~~~~~~~l~g~~~~~~ 64 (185)
.+.++||.|+++..+++ +.+.+.. .+ +.+..++|+.+...
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~-~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKW-YRVIGLSGDTQLKI 124 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTT-SCEEECCC---CCC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccC-ceEEEEeCCcccch
Confidence 45799999999988777 5444443 24 68888888765443
No 163
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=57.99 E-value=22 Score=28.66 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=44.7
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
...+.++||.|+++.-+.+.++.+...+ .+.+..++++...... . .
T Consensus 72 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----------------------~ 120 (395)
T 3pey_A 72 EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK--------Q-----------------------I 120 (395)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS--------C-----------------------B
T ss_pred CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc--------c-----------------------C
Confidence 3455688888888888887777776531 2455555554321110 1 1
Q ss_pred ceeEEEEecCCCC-cc-cCcCCCCCCcEEEEcC
Q 029910 99 KSHMIVVTDACLP-LL-SSGESAISARVLINYE 129 (185)
Q Consensus 99 ~~~iLV~Td~~~~-~~-~~G~d~~~v~~VI~~d 129 (185)
..+|+|+|.-.+- ++ ....++..+++||.=+
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 4679999964100 01 3345677888877533
No 164
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=56.57 E-value=3.4 Score=37.14 Aligned_cols=44 Identities=9% Similarity=-0.055 Sum_probs=30.3
Q ss_pred CCCcEEEEcCChhhHHHH-HHHHhcCCC--ceEEEEecCCCHHHHHH
Q 029910 24 PGLPMIVCCSSRDELDAV-CSAVSNLAD--ISFSSLHSDLAETERTL 67 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l-~~~L~~~~~--~~~~~l~g~~~~~~R~~ 67 (185)
.+.++||.++++.-+... .+.|..... +.+..++|+.+..++..
T Consensus 55 ~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~ 101 (699)
T 4gl2_A 55 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP 101 (699)
T ss_dssp CCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHH
Confidence 347899999999888888 777765432 78999999987665543
No 165
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=55.38 E-value=16 Score=26.50 Aligned_cols=40 Identities=5% Similarity=0.008 Sum_probs=25.5
Q ss_pred CCCCcEEEEcC-ChhhHHHHHHHH--------hcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCS-SRDELDAVCSAV--------SNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~-~~~~~~~l~~~L--------~~~~~~~~~~l~g~~~~ 62 (185)
.+.+++||||. +-..+...+..| ...|+-++..|.|++..
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 45578999998 544333333333 44674478899999653
No 166
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=54.96 E-value=37 Score=22.78 Aligned_cols=46 Identities=4% Similarity=-0.005 Sum_probs=34.1
Q ss_pred CcEEEEcC------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 26 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 26 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
.+++||.. ++-.|..+...|...+ +....+.-+.++..+....+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~-i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTC-SCEEEEESSSCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHh
Confidence 67999976 6678888999998887 8888887776665555544433
No 167
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=53.87 E-value=17 Score=30.93 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+.+++|+||.+-..+...+..|...|+-.+..+.|++
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 45689999999999999999999999844688888884
No 168
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=53.80 E-value=50 Score=24.09 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=59.3
Q ss_pred CCcEEEEcCC--------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029910 25 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (185)
Q Consensus 25 ~~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (185)
...+|||.|. ...++.|.+.|+..| +. ..++.+++.++-.+.+++|.+..+
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~-V~~~~dlt~~em~~~l~~~~~~dh------------- 80 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YE-VRNKNDLTREEIVELMRDVSKEDH------------- 80 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CE-EEEEESCCHHHHHHHHHHHHHSCC-------------
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCC-CE-EEEeeCCCHHHHHHHHHHHHHhhc-------------
Confidence 3578888763 346789999999998 56 456678999999999999987521
Q ss_pred CCCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHH
Q 029910 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 141 (185)
Q Consensus 91 ~~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~ 141 (185)
.....+|+.= ++.|.. ..|.-.|-+-++++...-.
T Consensus 81 -------~~~dc~vv~i-----lSHG~~----g~i~g~D~~~~l~~i~~~F 115 (146)
T 2dko_A 81 -------SKRSSFVCVL-----LSHGEE----GIIFGTNGPVDLKKITNFF 115 (146)
T ss_dssp -------TTEEEEEEEE-----ESCEET----TEEEETTEEEEHHHHHHTT
T ss_pred -------CCCCeEEEEe-----ccCCCC----CEEEEeCCcEeHHHHHHHh
Confidence 1345565554 577763 4666666655666655544
No 169
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=53.75 E-value=29 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCcEEEEcC---------------------ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 24 PGLPMIVCCS---------------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 24 ~~~~~IIF~~---------------------~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+..-+|||+| +...++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+.
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEI-KPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 4467899988 3356889999999999 565 566789999999999999864
No 170
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=53.42 E-value=22 Score=27.28 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=28.9
Q ss_pred CCcEEEEcCChh-hHHHHHHHHhcCCCceEEEEecC
Q 029910 25 GLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 25 ~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
.+++||||.+-. .+..++..|. .|+-.+..|.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 689999999876 7888899999 985458899988
No 171
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=53.29 E-value=16 Score=29.40 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=29.5
Q ss_pred CCCCcEEEEcCC--h-hhHHHHHHHHhcCCCceEEEEecCC
Q 029910 23 RPGLPMIVCCSS--R-DELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 23 ~~~~~~IIF~~~--~-~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+..++||||.+ - ..+..++..|...|+-.+..|.|++
T Consensus 90 ~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 90 SNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp CTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 455899999987 3 3477888889988854688999984
No 172
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=52.86 E-value=10 Score=31.07 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=32.0
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhc-CCCceEEEEecCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 60 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~l~g~~ 60 (185)
-.+.+++|+||.+-.++...+..|.. .|+-.+..+.|++
T Consensus 256 l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 256 INPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp CCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred CCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 45668999999999999999999986 7833588888883
No 173
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=51.46 E-value=34 Score=28.14 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=40.1
Q ss_pred CcEEEEcCC-----------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 26 LPMIVCCSS-----------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 26 ~~~IIF~~~-----------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
.-+||++|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG-YSV-DVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEeeCCCHHHHHHHHHHHHh
Confidence 459999998 567899999999999 565 56668999999999999975
No 174
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=49.84 E-value=11 Score=30.61 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=43.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+..-+|||+|+...++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLG-YEV-QKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHT-EEE-EEEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCC-CEE-EEeeCCCHHHHHHHHHHHHhc
Confidence 34679999999999999999999999 565 556789999999999999863
No 175
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=49.79 E-value=9.5 Score=26.59 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCcEEEEcCChhh---------HHHHHHHHhcCCCceEEEEecCC
Q 029910 25 GLPMIVCCSSRDE---------LDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 25 ~~~~IIF~~~~~~---------~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+++||||.+-.. +..++..|...|+ .+..|.|++
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCH
Confidence 4789999987654 3467788888885 999999984
No 176
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=49.75 E-value=9.2 Score=32.35 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=32.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~ 64 (185)
.+++|+||.+-.++...+..|...|+-.+..+.|++..-.
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~ 285 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYS 285 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHh
Confidence 6899999999888888888898888435888889875543
No 177
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=49.44 E-value=22 Score=29.94 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=29.4
Q ss_pred CCCCcEEEEc-CCh-hhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCC-SSR-DELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~-~~~-~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+++|||| .+- ..+...+..|+..|+ ++..|.|++..
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~a 133 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQA 133 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHH
Confidence 4568999999 433 334477888988996 99999999643
No 178
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.29 E-value=26 Score=29.61 Aligned_cols=36 Identities=3% Similarity=0.081 Sum_probs=30.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCce-EEEEecCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 61 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~l~g~~~ 61 (185)
+.++||.|+++.-+....+.+...+ +. +..+||+.+
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~-~~~v~~~~g~~~ 169 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRIK 169 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGC-GGGEEEBSSSCB
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-CcceEEECCCcC
Confidence 4799999999999999999998876 78 888988754
No 179
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=49.16 E-value=13 Score=32.44 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=33.6
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++|+||.+-..+...+..|...|+ .+..+.|++.
T Consensus 521 ~~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~ 559 (565)
T 3ntd_A 521 LPKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYR 559 (565)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred cCCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHH
Confidence 34568999999999999999999999995 9999999854
No 180
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=49.14 E-value=36 Score=26.32 Aligned_cols=35 Identities=3% Similarity=0.087 Sum_probs=27.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCce-EEEEecCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDL 60 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~l~g~~ 60 (185)
+.+++|+|+++.-+..+.+.+...+ +. +..++|+.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~-~~~v~~~~g~~ 168 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRI 168 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGC-GGGEEEESSSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 4788888888888888888887765 67 77777764
No 181
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=47.06 E-value=70 Score=23.73 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=41.0
Q ss_pred hhhHHHHHHH-HhcCCCceEEEEe-cCCCH----------HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 35 RDELDAVCSA-VSNLADISFSSLH-SDLAE----------TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 35 ~~~~~~l~~~-L~~~~~~~~~~l~-g~~~~----------~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
..-++.+++. +...| ..+..++ .+.+. .+-....+++... --+
T Consensus 19 ~~la~~i~~~~l~~~g-~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~a------------------------D~i 73 (197)
T 2vzf_A 19 AKLAEYALAHVLARSD-SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNA------------------------DGL 73 (197)
T ss_dssp HHHHHHHHHHHHHHSS-EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHC------------------------SEE
T ss_pred HHHHHHHHHHHHHHCC-CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHC------------------------CEE
Confidence 4455566666 66555 5666555 23332 2334455566554 457
Q ss_pred EEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhh
Q 029910 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 143 (185)
Q Consensus 103 LV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR 143 (185)
+++|++ .++.+|.....++.++.+
T Consensus 74 i~~sP~-----------------y~~~~p~~lK~~ld~l~~ 97 (197)
T 2vzf_A 74 IVATPI-----------------YKASYTGLLKAFLDILPQ 97 (197)
T ss_dssp EEEEEC-----------------BTTBCCHHHHHHHTTSCT
T ss_pred EEEeCc-----------------cCCCCCHHHHHHHHhccc
Confidence 888888 356778888888888754
No 182
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=46.20 E-value=24 Score=28.76 Aligned_cols=39 Identities=0% Similarity=-0.051 Sum_probs=25.4
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~ 61 (185)
....++||.++++.-+.++++.+... +.+.+....++..
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 135 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcc
Confidence 44457888888888888877666543 2255666665543
No 183
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=46.11 E-value=71 Score=22.09 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHccCCCCCcEEEEcC------ChhhHHHHHHHHhcCCCce---EEEEecCCCHHHHHHH
Q 029910 12 VELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADIS---FSSLHSDLAETERTLI 68 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~------~~~~~~~l~~~L~~~~~~~---~~~l~g~~~~~~R~~~ 68 (185)
.+.++.+++ ..+++||.. ++--|....+.|...+ +. ...+.-...++.|...
T Consensus 6 ~~~v~~~i~----~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~~~~dv~~~~~~~~~l 66 (121)
T 3gx8_A 6 RKAIEDAIE----SAPVVLFMKGTPEFPKCGFSRATIGLLGNQG-VDPAKFAAYNVLEDPELREGI 66 (121)
T ss_dssp HHHHHHHHH----SCSEEEEESBCSSSBCTTHHHHHHHHHHHHT-BCGGGEEEEECTTCHHHHHHH
T ss_pred HHHHHHHhc----cCCEEEEEeccCCCCCCccHHHHHHHHHHcC-CCcceEEEEEecCCHHHHHHH
Confidence 344444444 278999988 4888889999998887 66 5555545555554443
No 184
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=45.52 E-value=46 Score=27.52 Aligned_cols=50 Identities=4% Similarity=0.021 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCh------------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 24 PGLPMIVCCSSR------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 24 ~~~~~IIF~~~~------------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+..-+|||+|.. ..++.|.+.|+..| +.+ .++.+++..+-.+.+++|.+.
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~~ 121 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELN-FTI-FPYGNVNQDQFFKLLTMVTSS 121 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTT-EEE-EEECSCCHHHHHHHHHHHHTS
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEccCCCHHHHHHHHHHHHHH
Confidence 446789988763 67889999999998 565 567799999999999999875
No 185
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=45.13 E-value=65 Score=21.34 Aligned_cols=44 Identities=5% Similarity=0.048 Sum_probs=32.5
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHH
Q 029910 26 LPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (185)
Q Consensus 26 ~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~ 70 (185)
.++.||.. ++--|....+.|.+.| +....+.=+.+++.+....+
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~g-i~y~~idi~~d~~~~~~~~~ 48 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANR-IAYDEVDIEHNRAAAEFVGS 48 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTT-CCCEEEETTTCHHHHHHHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcC-CceEEEEcCCCHHHHHHHHH
Confidence 46778864 4567788888898888 88888887777777665543
No 186
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=44.95 E-value=70 Score=23.78 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=40.5
Q ss_pred CCCcEEEEcCC---------------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 24 PGLPMIVCCSS---------------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 24 ~~~~~IIF~~~---------------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+...+|||.|. ...++.|.+.|+..| +.+ .++.+++..+-.+.+++|.+.
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHHh
Confidence 34788998873 466788999999998 565 667789999999999999764
No 187
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=44.85 E-value=89 Score=25.22 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=58.3
Q ss_pred CcEEEEcCC--------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029910 26 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (185)
Q Consensus 26 ~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (185)
.-+|||+|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+..+
T Consensus 45 g~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~~dh-------------- 108 (277)
T 4ehd_A 45 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEV-RNKNDLTREEIVELMRDVSKEDH-------------- 108 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTSCC--------------
T ss_pred CEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHhhcc--------------
Confidence 567888653 336889999999999 565 56778999999999999987421
Q ss_pred CCCCCCCceeEEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHH
Q 029910 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 141 (185)
Q Consensus 92 ~~~~~~~~~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~ 141 (185)
....++|+.= ++.|.. ..|+-.|-+-++++..+..
T Consensus 109 ------~~~d~~vv~i-----lSHG~~----g~i~g~D~~v~l~~I~~~f 143 (277)
T 4ehd_A 109 ------SKRSSFVCVL-----LSHGEE----GIIFGTNGPVDLKKITNFF 143 (277)
T ss_dssp ------TTEEEEEEEE-----ESCEET----TEEEETTEEEEHHHHHHTT
T ss_pred ------cCCCEEEEEE-----EcCCCC----CEEEEeCCcEeHHHHHHHh
Confidence 1344555444 466664 4666666555566665544
No 188
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=44.31 E-value=33 Score=30.15 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 10 ~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+...+..+. ..+.+++||||.+-..+...+..|...|+-.+..|.|++
T Consensus 50 ~~~~~~~~l~--~~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 50 RLELEIHARV--PRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp GHHHHHHHHS--CCTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred HHHHHHHhhC--CCCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 3444444432 235689999999877889999999999955688898874
No 189
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=43.51 E-value=18 Score=31.85 Aligned_cols=39 Identities=3% Similarity=0.003 Sum_probs=33.2
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++|+||.+-..+...+..|...| +++..+.|++.
T Consensus 538 l~~~~~iv~~C~~g~rs~~a~~~l~~~G-~~v~~l~GG~~ 576 (588)
T 3ics_A 538 VPVDKDIYITCQLGMRGYVAARMLMEKG-YKVKNVDGGFK 576 (588)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTT-CCEEEETTHHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcC-CcEEEEcchHH
Confidence 3456899999999999999999999998 57888888854
No 190
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=43.35 E-value=80 Score=23.79 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.6
Q ss_pred CCcEEEEcCCh-----------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 25 GLPMIVCCSSR-----------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 25 ~~~~IIF~~~~-----------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
...+||+.|.. ..++.|.+.|+..| +.+ .++.+++..+-.+.+++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG-YSV-DVKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHh
Confidence 35689998863 67889999999998 576 46678999999999999975
No 191
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=42.66 E-value=28 Score=28.13 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCC---hhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~---~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
+.+...+..+ . -.+.+++||||.+ ...+..++..|+..|+-.+..|.|++
T Consensus 93 ~~~~~~~~~l-g-i~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 93 EHFAEYAGRL-G-VGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp HHHHHHHHHT-T-CCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHc-C-CCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 4555666653 1 2456899999964 23478888899999854688999984
No 192
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=42.29 E-value=21 Score=31.46 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=31.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEec-CCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS-DLA 61 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g-~~~ 61 (185)
+.+++||||.+-..+...+.+|...| +.+..|.| ++.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G-~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMG-WQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTT-CEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcC-CeEEEecCCChH
Confidence 45899999999888888889999999 59999999 753
No 193
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=41.64 E-value=58 Score=24.33 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCh--------------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhc
Q 029910 24 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 24 ~~~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
+...+|||.|.. ..++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLG-YDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTT-EEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCC-CEE-EEeeCCCHHHHHHHHHHhhh
Confidence 457789988752 36789999999998 565 66789999999999999987
No 194
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=41.52 E-value=1.2e+02 Score=25.67 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHccCCCCCcE-EEEc----CChhhHHHHHHHHhcCCCceEEEEe-cCCCHHHHHHHHHHHhcc
Q 029910 8 QETLVELLHLVVAGRRPGLPM-IVCC----SSRDELDAVCSAVSNLADISFSSLH-SDLAETERTLILEEFRHT 75 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~-IIF~----~~~~~~~~l~~~L~~~~~~~~~~l~-g~~~~~~R~~~l~~F~~~ 75 (185)
.+.+++......+......++ |+|. ||.+.|+.+++.|.+.| +.+..+. -+.+......++++..+.
T Consensus 248 ~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G-v~~~~~~~~d~~~~~~s~i~~~i~~~ 320 (410)
T 4dik_A 248 PQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKG-FTPVVYKFSDEERPAISEILKDIPDS 320 (410)
T ss_dssp HHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTT-CEEEEEEECSSCCCCHHHHHHHSTTC
T ss_pred HHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcC-CceEEEEeccCCCCCHHHHHHHHHhC
Confidence 455666666544423333345 5555 46778889999998888 7766543 345555556677776554
No 195
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=40.42 E-value=16 Score=31.41 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=33.1
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
-.+.+++|+||.+-.++...+..|...|.-.+..+.|++.
T Consensus 424 l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 424 VPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3456899999999999999999999988445888888854
No 196
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=40.03 E-value=22 Score=30.23 Aligned_cols=73 Identities=3% Similarity=-0.028 Sum_probs=40.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcC----CCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
..++||.++++.-+.++++.+... +.+.+....++....... . ...
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------------------~~~ 211 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------K-----------------------ISE 211 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC-------C-----------------------CCC
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc-------c-----------------------CCC
Confidence 347888888888877776655432 224555555443221110 1 135
Q ss_pred eEEEEecCCCC-cc-c-CcCCCCCCcEEEE
Q 029910 101 HMIVVTDACLP-LL-S-SGESAISARVLIN 127 (185)
Q Consensus 101 ~iLV~Td~~~~-~~-~-~G~d~~~v~~VI~ 127 (185)
+|+|+|+-++- ++ . ..+++..+++||.
T Consensus 212 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp SEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred CEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 79999975210 00 1 3567788888775
No 197
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=39.95 E-value=38 Score=28.10 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHc----cCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 9 ETLVELLHLVVA----GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 9 ~~l~~ll~~l~~----~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
+.+...++.++. +-.+.+++|+||.+--+|-.+.-.|...|.-.+..+.|+.++
T Consensus 255 e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsE 312 (327)
T 3utn_X 255 EAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTE 312 (327)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHH
Confidence 344444544332 345668999999999888888778877773357777776443
No 198
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=39.88 E-value=41 Score=26.87 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=38.9
Q ss_pred CcEEEEcCC-------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~-------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.-+|||+|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+.
T Consensus 21 g~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 21 GMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLD-FEV-TVYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp EEEEEEEECCC-----------CCHHHHHHHHHHHTT-CEE-EEEEECSHHHHHHHHHHHHTS
T ss_pred cEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 457888774 356889999999999 564 566689999999999999864
No 199
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=39.23 E-value=39 Score=28.83 Aligned_cols=73 Identities=7% Similarity=0.063 Sum_probs=49.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (185)
.++||.|+++.-+....+.+...+ ...+..++|+.+..++ ..+ ..+|
T Consensus 158 ~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~-----------------------~~~I 207 (510)
T 2oca_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKN-----------------------DAPV 207 (510)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCT-----------------------TCSE
T ss_pred CeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------ccc-----------------------CCcE
Confidence 499999999998888888887652 2578888888776654 233 5789
Q ss_pred EEEecCCCCcccCc--CCCCCCcEEEEcCCC
Q 029910 103 IVVTDACLPLLSSG--ESAISARVLINYELP 131 (185)
Q Consensus 103 LV~Td~~~~~~~~G--~d~~~v~~VI~~d~P 131 (185)
+|+|.-. +.+. ..+.+.++||.=+..
T Consensus 208 ~i~T~~~---l~~~~~~~~~~~~liIiDE~H 235 (510)
T 2oca_A 208 VVGTWQT---VVKQPKEWFSQFGMMMNDECH 235 (510)
T ss_dssp EEEEHHH---HTTSCGGGGGGEEEEEEETGG
T ss_pred EEEeHHH---HhhchhhhhhcCCEEEEECCc
Confidence 9998641 2222 345566666654433
No 200
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=39.13 E-value=1e+02 Score=23.41 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=39.4
Q ss_pred CcEEEEcCCh--------------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
..+|||+|.. ..++.|.+.|+..| +.+ .++-+++.++-.+.+++|.+.
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEV-KCFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHhhh
Confidence 5689998853 46889999999999 565 455689999999999999764
No 201
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=38.74 E-value=33 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=33.4
Q ss_pred cCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 32 CSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 32 ~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
|.+++.|..+...|...+ +..-.+.-+++++.|.+..++.
T Consensus 13 c~~kk~c~~aK~lL~~kg-V~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANK-IGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHHhc
Confidence 344567789999999998 8999999888999998888776
No 202
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=38.60 E-value=90 Score=23.51 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=38.2
Q ss_pred CcEEEEcCC--------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
..+|||.|. ...++.|.+.|...| +.+ .++-+++..+-.+.+++|.+.
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~Lg-F~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHT-EEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 468888764 245778999999998 565 566789999999999999775
No 203
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=38.41 E-value=79 Score=25.41 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=39.8
Q ss_pred CcEEEEcCC-------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~-------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.-+|||.|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEE-EEecCcCHHHHHHHHHHHHHh
Confidence 458888875 667889999999999 565 566789999999999999864
No 204
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=37.92 E-value=26 Score=30.76 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=43.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
+.++||.|.+...++.|.+.|...+ +.+...... . .+. ...+.|
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~-i~~~~~~~~-~---------~~~-------------------------~g~v~i 425 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIK-IAPQRIMRL-D---------EAS-------------------------DRGRYL 425 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGT-CCCEECSCG-G---------GCC-------------------------TTCEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcC-CCceecCch-h---------hcC-------------------------CCcEEE
Confidence 3678888888888888888888776 555443221 0 111 234566
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcC
Q 029910 105 VTDACLPLLSSGESAISARVLINYE 129 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d 129 (185)
+..- +++|+.+|+..++|.-+
T Consensus 426 ~~g~----L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 426 MIGA----AEHGFVDTVRNLALICE 446 (483)
T ss_dssp EESC----CCSCEEETTTTEEEEEH
T ss_pred EEcc----cccCcccCCCCEEEEEc
Confidence 6666 89999999999877643
No 205
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=37.91 E-value=67 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=39.2
Q ss_pred CcEEEEcCC--------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.-+||+.|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+.
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEV-RNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 568888873 237889999999999 575 566789999999999999875
No 206
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=37.43 E-value=1.7e+02 Score=24.05 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=13.2
Q ss_pred EcCCCCCHHHHHHHHhhh
Q 029910 127 NYELPTKKETYIRRMTTC 144 (185)
Q Consensus 127 ~~d~P~~~~~yiqR~GR~ 144 (185)
+..+|.....++.++.+.
T Consensus 319 ~~~~~~~~k~fld~l~~~ 336 (414)
T 2q9u_A 319 NNTMMPSVAAALNYVRGL 336 (414)
T ss_dssp TTBCCHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHhh
Confidence 346677788999998753
No 207
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=37.07 E-value=1.3e+02 Score=23.82 Aligned_cols=42 Identities=7% Similarity=0.162 Sum_probs=33.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 67 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~ 67 (185)
+-++++.-.+.+.++.+.+.++..| .++..+..+++..+..+
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~ 72 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDVE 72 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHH
Confidence 4677777777788899999998887 68999999987776654
No 208
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=36.78 E-value=1.7e+02 Score=23.81 Aligned_cols=18 Identities=6% Similarity=-0.164 Sum_probs=13.9
Q ss_pred EcCCCCCHHHHHHHHhhh
Q 029910 127 NYELPTKKETYIRRMTTC 144 (185)
Q Consensus 127 ~~d~P~~~~~yiqR~GR~ 144 (185)
+..+|.....++.++.+.
T Consensus 319 ~~~~~~~~k~~ld~l~~~ 336 (404)
T 2ohh_A 319 YDEPYPSVGDLLMYLRGL 336 (404)
T ss_dssp TTEECTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhhhc
Confidence 456777899999988763
No 209
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=35.18 E-value=1.3e+02 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=18.1
Q ss_pred eeEEEEecCCCCcccCcCCCCCCcEEEEcCC
Q 029910 100 SHMIVVTDACLPLLSSGESAISARVLINYEL 130 (185)
Q Consensus 100 ~~iLV~Td~~~~~~~~G~d~~~v~~VI~~d~ 130 (185)
..+.|.|-- .+.|+.+ +.||.+++
T Consensus 100 ~~v~v~t~~----~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 100 PGVIVVPSF----LAKGLEF---DAVIVWNA 123 (174)
T ss_dssp SSEEEEEGG----GCTTCCE---EEEEEETC
T ss_pred CCeEEEEcc----ccCCcCC---CEEEEecC
Confidence 468888988 8999886 46666664
No 210
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=35.16 E-value=96 Score=20.43 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=32.9
Q ss_pred CCCCcEEEEc-CChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHH
Q 029910 23 RPGLPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68 (185)
Q Consensus 23 ~~~~~~IIF~-~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~ 68 (185)
....+++||. +++-.|..+...|...+ +....+.-+..+..+...
T Consensus 13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~-i~y~~idI~~~~~~~~~l 58 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCMRALALLKRKG-VEFQEYCIDGDNEAREAM 58 (99)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHHHHT-CCCEEEECTTCHHHHHHH
T ss_pred cCCCCEEEEEcCCChhHHHHHHHHHHCC-CCCEEEEcCCCHHHHHHH
Confidence 3457888886 56788888889998887 777777766666555443
No 211
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=34.98 E-value=29 Score=31.31 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=47.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
+.++|+.++++.-+...++.++. .| +++..++|+....++. .+ ..+
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g-~~v~~~~G~~~~~~~~-------~~-----------------------~~~ 116 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIG-LRIGISTGDYESRDEH-------LG-----------------------DCD 116 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTT-CCEEEECSSCBCCSSC-------ST-----------------------TCS
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcC-CEEEEEeCCCCcchhh-------cc-----------------------CCC
Confidence 47899999999888888888743 24 7888888876554321 11 478
Q ss_pred EEEEecCCC-CcccCcCC-CCCCcEEEEcCC
Q 029910 102 MIVVTDACL-PLLSSGES-AISARVLINYEL 130 (185)
Q Consensus 102 iLV~Td~~~-~~~~~G~d-~~~v~~VI~~d~ 130 (185)
|+|+|+-.+ -++.++.. +.++++||.=+.
T Consensus 117 Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 117 IIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred EEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 999996200 00223333 667888876443
No 212
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=33.84 E-value=1.2e+02 Score=25.04 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=40.6
Q ss_pred CCcEEEEcCC-------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 25 GLPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 25 ~~~~IIF~~~-------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
..-+|||.|. ...++.|.+.|+..| +.+ .++.+++..+-.+.+++|.+.
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHHh
Confidence 3568998875 667889999999999 565 566789999999999999864
No 213
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=33.82 E-value=65 Score=23.60 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcC
Q 029910 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (185)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 48 (185)
...+.|+++... .+.+++|.|.+.+.++.|-+.|=..
T Consensus 26 ~~aCrL~~ka~~---~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 26 QLVCEIAAERWR---SGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp HHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHhCC
Confidence 445667776554 5689999999999999999988543
No 214
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=33.74 E-value=1.1e+02 Score=24.68 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=40.0
Q ss_pred CCcEEEEcCCh--------------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 25 GLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 25 ~~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
..-+|||+|.. ..++.|.+.|+..| +.+. ++.+++.++-.+.+++|...
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEE-EecCCCHHHHHHHHHHHHhh
Confidence 35689998853 56889999999999 5654 66789999999999999764
No 215
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=33.27 E-value=58 Score=31.60 Aligned_cols=37 Identities=5% Similarity=-0.042 Sum_probs=30.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~ 61 (185)
.+.++||-++++.-+.+.++.+.... -.+..++|+.+
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~-~~VglltGd~~ 262 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEF-GDVGLMTGDIT 262 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHT-SSEEEECSSCB
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHh-CCccEEeCccc
Confidence 35789999999999999999888765 37888888876
No 216
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=32.13 E-value=39 Score=30.56 Aligned_cols=40 Identities=5% Similarity=0.117 Sum_probs=32.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCHHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETER 65 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~~~R 65 (185)
+.++|+-++++.-+...++.++. .| +++..++|+.+...+
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~~~~ 110 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIG-LRVAMATGDYDSKDE 110 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGT-CCEEEECSCSSCCCG
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcC-CEEEEecCCCCcccc
Confidence 47899999999999999888853 35 789999998766543
No 217
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=32.05 E-value=59 Score=31.13 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=31.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcC-CCceEEEEecCCC
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLA 61 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~g~~~ 61 (185)
.+.++||.++++.-+...++.+... +++.+..++|+.+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 4578999999999999999999875 2478999999864
No 218
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=31.93 E-value=34 Score=31.48 Aligned_cols=71 Identities=17% Similarity=0.037 Sum_probs=46.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 104 (185)
+.+++|-++++..|.++++.+...-+..+....|+.. ..+ ..+|+|
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~-----------------------~~~IlV 302 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITT-----------------------GAPVTY 302 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECC-----------------------CCSEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccC-----------------------CCCEEE
Confidence 3588888899888888887775431245666666533 222 578999
Q ss_pred EecCCCCcccCcCCCCCCcEEEEcCC
Q 029910 105 VTDACLPLLSSGESAISARVLINYEL 130 (185)
Q Consensus 105 ~Td~~~~~~~~G~d~~~v~~VI~~d~ 130 (185)
+|+-++ +....++...+++||.=+.
T Consensus 303 ~TPGrL-l~~~~l~l~~l~~lVlDEA 327 (666)
T 3o8b_A 303 STYGKF-LADGGCSGGAYDIIICDEC 327 (666)
T ss_dssp EEHHHH-HHTTSCCTTSCSEEEETTT
T ss_pred ECcHHH-HhCCCcccCcccEEEEccc
Confidence 998632 2234567777888886444
No 219
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=31.30 E-value=32 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=21.9
Q ss_pred CcEEEE-c-CChhhHH----HHHHHHhcCCC--ceEEEEecCCCH
Q 029910 26 LPMIVC-C-SSRDELD----AVCSAVSNLAD--ISFSSLHSDLAE 62 (185)
Q Consensus 26 ~~~IIF-~-~~~~~~~----~l~~~L~~~~~--~~~~~l~g~~~~ 62 (185)
++.||| | .+-..+. .+...|...|+ ..+..|.|++..
T Consensus 68 ~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 68 KELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 455555 9 4433333 34477777772 378889998543
No 220
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=30.65 E-value=1.1e+02 Score=21.84 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHHHHccCCCCCcEEEEcCCh---hhHHHHHHHHhcCCCceEE----EEecCCCHHHHHHHHHHHh
Q 029910 12 VELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISFS----SLHSDLAETERTLILEEFR 73 (185)
Q Consensus 12 ~~ll~~l~~~~~~~~~~IIF~~~~---~~~~~l~~~L~~~~~~~~~----~l~g~~~~~~R~~~l~~F~ 73 (185)
..++..+......++++.+|++.- .....+.+.|...| ..+. .+.+. +.++..+.+++|-
T Consensus 69 ~~fl~~l~~~~l~gk~v~~fgs~g~~g~a~~~l~~~l~~~G-~~~v~~~~~~~~~-P~~~dl~~~~~~g 135 (161)
T 3hly_A 69 ATALSTIFAAAHNKQAIGLFDSYGGDDEPIDALLAQFRNLG-LHTAFPPIRVKDQ-PTEAIYQQCEESG 135 (161)
T ss_dssp HHHHHHHHHHCCTTSEEEEECCCCSSBCCHHHHHHHHHHTT-CEESSSCBCCCSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhCCCEEEEEEcCCCCcHHHHHHHHHHHHCC-CEEecCceEEeeC-CCHHHHHHHHHHH
Confidence 455555444346779999998753 45788888998877 4432 23344 4444444455543
No 221
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=30.10 E-value=1.2e+02 Score=20.04 Aligned_cols=108 Identities=9% Similarity=0.094 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhc-CCCceEEEEecCCCHHHHHHHHHHHhccccccccccccc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (185)
.......+..++. .. +.. +..+++... ....+.. .. ..++.+.-.++...-.+.++..+...
T Consensus 24 ~~~~~~~l~~~L~-~~-g~~-v~~~~~~~~---al~~l~~~~~-~dlvilD~~l~~~~g~~~~~~l~~~~---------- 86 (138)
T 2b4a_A 24 EPSHATLIQYHLN-QL-GAE-VTVHPSGSA---FFQHRSQLST-CDLLIVSDQLVDLSIFSLLDIVKEQT---------- 86 (138)
T ss_dssp CHHHHHHHHHHHH-HT-TCE-EEEESSHHH---HHHTGGGGGS-CSEEEEETTCTTSCHHHHHHHHTTSS----------
T ss_pred CHHHHHHHHHHHH-Hc-CCE-EEEeCCHHH---HHHHHHhCCC-CCEEEEeCCCCCCCHHHHHHHHHhhC----------
Confidence 3444555555454 22 233 334444332 2334444 33 56777776676656666777776531
Q ss_pred CCCCCCCCCCCCceeEEEEe-cCCCCcccCcCCCCC-CcEEEEcCCCCCHHHHHHHHhhhcCCCCE
Q 029910 87 SGDESETGKDEHKSHMIVVT-DACLPLLSSGESAIS-ARVLINYELPTKKETYIRRMTTCLAADGS 150 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~iLV~T-d~~~~~~~~G~d~~~-v~~VI~~d~P~~~~~yiqR~GR~~~~~g~ 150 (185)
....+++.| .. ..... ... ++-+ ..-|.+.+...+++.++.+..|.
T Consensus 87 -----------~~~~ii~ls~~~----~~~~~-~~~~~~~~--l~KP~~~~~L~~~i~~~~~~~~~ 134 (138)
T 2b4a_A 87 -----------KQPSVLILTTGR----HELIE-SSEHNLSY--LQKPFAISELRAAIDYHKPSMGV 134 (138)
T ss_dssp -----------SCCEEEEEESCC------CCC-CSSSCEEE--EESSCCHHHHHHHHHHTCCC---
T ss_pred -----------CCCCEEEEECCC----CCHHH-HHHHHHhe--eeCCCCHHHHHHHHHHHHHhcCC
Confidence 146777777 54 33222 222 2222 23478899999999877554443
No 222
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.91 E-value=2e+02 Score=22.29 Aligned_cols=124 Identities=8% Similarity=0.080 Sum_probs=71.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhcCCC-ceEEEEecCCCHHHHHHHHHHH-hcccccccccccccCCCCCCCCCCCCcee
Q 029910 24 PGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEF-RHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (185)
Q Consensus 24 ~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~l~g~~~~~~R~~~l~~F-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
..++.++-++.....+...+.....+. ..+..+.+++ ++-....++. ..+ ..+
T Consensus 11 ~m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~l--e~av~~a~~~~~~~-----------------------~~d 65 (225)
T 2pju_A 11 DDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGF--EKAVTYIRKKLANE-----------------------RCD 65 (225)
T ss_dssp --CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCH--HHHHHHHHHHTTTS-----------------------CCS
T ss_pred cCCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcH--HHHHHHHHHHHhcC-----------------------CCe
Confidence 346777777776666644444444331 3455555664 3344444443 333 478
Q ss_pred EEEEecCCCCcccCcCCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEeeCchHHHHHHHHHHhCCcccccc
Q 029910 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIVAEVP 178 (185)
Q Consensus 102 iLV~Td~~~~~~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~~~~~ 178 (185)
++|+-..-+.++.+-+++|-+ ++|.|..++++-+-++.+..+..-.+-.++-...++.+.+.++..+....
T Consensus 66 VIISRGgta~~Lr~~~~iPVV------~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~ 136 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRLSVPVI------LIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRS 136 (225)
T ss_dssp EEEEEHHHHHHHHTTCSSCEE------EECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEE
T ss_pred EEEeCChHHHHHHhhCCCCEE------EecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEE
Confidence 999865422234555565532 56788999999887764443333223334556777888888888776544
No 223
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=28.88 E-value=37 Score=24.39 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=25.8
Q ss_pred CCCcE--EEEcC-ChhhHHHHHHHHhc----------CCCceEEEEecCCC
Q 029910 24 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDLA 61 (185)
Q Consensus 24 ~~~~~--IIF~~-~~~~~~~l~~~L~~----------~~~~~~~~l~g~~~ 61 (185)
..+++ |+||. +-..+...+..|.. .|+-.+..|.|++.
T Consensus 86 ~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 86 DGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 44665 45798 76667777777764 36446889999854
No 224
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.77 E-value=1.1e+02 Score=19.11 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=14.5
Q ss_pred ceEEEEecCCCHHHHHHHHHHHhc
Q 029910 51 ISFSSLHSDLAETERTLILEEFRH 74 (185)
Q Consensus 51 ~~~~~l~g~~~~~~R~~~l~~F~~ 74 (185)
..++.+.-.++...-.+.++..+.
T Consensus 46 ~dlii~d~~~~~~~~~~~~~~l~~ 69 (119)
T 2j48_A 46 PIVILMAWPPPDQSCLLLLQHLRE 69 (119)
T ss_dssp CSEEEEECSTTCCTHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHh
Confidence 466677666655555556666654
No 225
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=28.53 E-value=98 Score=19.82 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=30.3
Q ss_pred cEEEEcC-ChhhH------HHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 27 PMIVCCS-SRDEL------DAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 27 ~~IIF~~-~~~~~------~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
+++||+. .+-.| ....+.|...+ +....+.-+.++..|....+..
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~-i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKR-IQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTT-CCCEEEETTSCHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHHHh
Confidence 5667754 34455 78888888887 7877777776766666554443
No 226
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=27.83 E-value=78 Score=24.79 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcC-----ChhhHHHHHHHHhcCCCceEEEEecCC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSDL 60 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~-----~~~~~~~l~~~L~~~~~~~~~~l~g~~ 60 (185)
.+++.+.++- .. .-..++++||+| |.+....+.+...... +++..+-...
T Consensus 146 ~e~i~~~lki-~~-el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vL~IE~~~ 200 (220)
T 3s5u_A 146 FEKVMEITQV-HR-YLSKKKLLIFINACTYLTEDEVQQVVEYISLNN-VDVLFLEQRV 200 (220)
T ss_dssp HHHHHHHHHH-HH-HCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred HHHHHHHHHH-HH-HhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEeccc
Confidence 3444444443 22 344599999999 6788899999988886 8899887763
No 227
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=27.56 E-value=60 Score=23.61 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCCcEEE--EcC-ChhhHHHHHHHHhc----------CCCceEEEEecCC
Q 029910 24 PGLPMIV--CCS-SRDELDAVCSAVSN----------LADISFSSLHSDL 60 (185)
Q Consensus 24 ~~~~~II--F~~-~~~~~~~l~~~L~~----------~~~~~~~~l~g~~ 60 (185)
+.+++|| +|. +-..+...+..|.. .|+-.+..|.|++
T Consensus 88 ~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 137 (175)
T 2a2k_A 88 LDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 137 (175)
T ss_dssp --CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCH
Confidence 4567755 487 66666666777763 3644688888873
No 228
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=27.35 E-value=93 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.2
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhcC
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSNL 48 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~~ 48 (185)
.....++||.|+++.-+.+..+.+...
T Consensus 186 ~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 186 SVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp TCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 344568999999998888888888764
No 229
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=26.95 E-value=1.1e+02 Score=24.41 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCh--------------hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 24 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 24 ~~~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
+..-+||+.|.. ..++.|.+.|+..| +.+ .++.+++.++-.+.+++|.+.
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLH-FMV-EVKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-EEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEcCCCHHHHHHHHHHHHHh
Confidence 446788988762 37889999999998 565 566799999999999999865
No 230
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=26.36 E-value=83 Score=25.82 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=38.9
Q ss_pred CcEEEEcCC--------------hhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.-+|||.|. ...++.|.+.|+..| +.+ .++.+++..+-.+.+++|...
T Consensus 70 g~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 70 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHT-EEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCC-CEE-EEecCcCHHHHHHHHHHHHHh
Confidence 458888874 356789999999998 675 566789999999999999765
No 231
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=26.17 E-value=1.3e+02 Score=25.09 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=36.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCCCceEEE-EecCCCHHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLADISFSS-LHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~-l~g~~~~~~R~~~l~~F~~~ 75 (185)
.=+|||++-....+.+.+.+...| ++.+. +..+.+..+..++.+.-+..
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~G-v~~vViiT~G~~e~~~~~l~~~a~~~ 130 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQ-IRTIAIIAEGIPEALTRKLIKKADQK 130 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTT-CCEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 568899988888888899998777 76555 48899987666665555444
No 232
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=25.79 E-value=54 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCCcE--EEEcC-ChhhHHHHHHHHhc----------CCCceEEEEecCC
Q 029910 24 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDL 60 (185)
Q Consensus 24 ~~~~~--IIF~~-~~~~~~~l~~~L~~----------~~~~~~~~l~g~~ 60 (185)
+.+++ |+||. +-..+...+..|.. .|+-.+..|.|++
T Consensus 108 ~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 108 LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 45676 67898 66666666666654 5744688999983
No 233
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=25.23 E-value=3.4e+02 Score=24.36 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=36.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhcC-CCceEEEEe--------------------cCC--C---HHHHHHHHHHHhcc
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH--------------------SDL--A---ETERTLILEEFRHT 75 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l~--------------------g~~--~---~~~R~~~l~~F~~~ 75 (185)
+++||.+++...|.+++..|+.. +.-.+.++- ... + ...|..++..+.++
T Consensus 54 ~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~ 129 (664)
T 1c4o_A 54 RPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTR 129 (664)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999875 322333332 222 2 56788888888765
No 234
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=24.94 E-value=76 Score=25.07 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcC-----ChhhHHHHHHHHhcCCCceEEEEecC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~-----~~~~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
.+++.+.++- .. .-..++++||+| |.+....+.+...... +++..+-..
T Consensus 146 ~eki~~~lki-~~-el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vLlIE~~ 199 (229)
T 3qhq_A 146 FEKCFEIIQV-YH-YLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQ-KSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHH-HH-HCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred HHHHHHHHHH-HH-HhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 3445555543 22 344599999999 6788889999888776 888888766
No 235
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=24.78 E-value=3.1e+02 Score=22.95 Aligned_cols=69 Identities=12% Similarity=0.001 Sum_probs=44.4
Q ss_pred eeEecchHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHH
Q 029910 2 SVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (185)
Q Consensus 2 ~v~~~~~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F 72 (185)
+++|.+.....+-+...+... ++.++.|++...-..-...-.+...| ..+..++...+.++...++++-
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~-~gd~V~i~~~n~~e~~~~~lA~~~~G-av~vpl~~~~~~~~l~~~l~~~ 94 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAY-QQSRVGLYIDNSIQSIILIHACWLAN-IEIAMINTRLTPNEMTNQMRSI 94 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT-CCSEEEEECCSSHHHHHHHHHHHHTT-CEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEHHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEecCccCCHHHHHHHHHhc
Confidence 456777666666555445423 78888888866433332222333456 6888899999988887777664
No 236
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=24.24 E-value=1.2e+02 Score=22.09 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=14.0
Q ss_pred EcCCCCCHHHHHHHHhh
Q 029910 127 NYELPTKKETYIRRMTT 143 (185)
Q Consensus 127 ~~d~P~~~~~yiqR~GR 143 (185)
++++|.....++.|+.+
T Consensus 83 ~~~~~~~lk~~ld~~~~ 99 (200)
T 2a5l_A 83 FGNMASPLKYFLDGTSS 99 (200)
T ss_dssp TTBCCHHHHHHHHTCHH
T ss_pred ccCccHHHHHHHHHHHH
Confidence 56788889999999865
No 237
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.96 E-value=2.1e+02 Score=20.33 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCCh--hhHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHhcc
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~l~g~~~~~~R~~~l~~F~~~ 75 (185)
.+.+.+-+..+-. +-+..-++|.+.|. .-.....+.-+..| +.+..++.......|.+.-+.|++.
T Consensus 61 kedfrenireiwe-rypqldvvvivttddkewikdfieeakerg-vevfvvynnkdddrrkeaqqefrsd 128 (162)
T 2l82_A 61 KEDFRENIREIWE-RYPQLDVVVIVTTDDKEWIKDFIEEAKERG-VEVFVVYNNKDDDRRKEAQQEFRSD 128 (162)
T ss_dssp HHHHHHHHHHHHH-HCTTCCEEEEEECCCHHHHHHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH-hCCCCcEEEEEecCcHHHHHHHHHHHHhcC-cEEEEEecCCCchhHHHHHHHhhhc
Confidence 4555566666555 44445555555443 33333344445667 8999999999999999999999987
No 238
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=22.94 E-value=1.8e+02 Score=25.37 Aligned_cols=91 Identities=8% Similarity=0.095 Sum_probs=56.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecC-------C-C----HHHHHHHHHHHhcccccccccccccCCCCCC
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-------L-A----ETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~-------~-~----~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (185)
++++||-|++...|.+++..|+....-.+..+-.. . + ..+|..++.++.++
T Consensus 39 ~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~----------------- 101 (483)
T 3hjh_A 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM----------------- 101 (483)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGC-----------------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhC-----------------
Confidence 47899999999999999999986521233333221 1 1 24577888888776
Q ss_pred CCCCCCceeEEEEecCCCCcccCcCCCC-----CCcEEEEcCCCCCHHHHHHHHh
Q 029910 93 TGKDEHKSHMIVVTDACLPLLSSGESAI-----SARVLINYELPTKKETYIRRMT 142 (185)
Q Consensus 93 ~~~~~~~~~iLV~Td~~~~~~~~G~d~~-----~v~~VI~~d~P~~~~~yiqR~G 142 (185)
...|+|+|-. +..+.=.| +..+.+...---+.+...++.-
T Consensus 102 ------~~~ivv~sv~----al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~ 146 (483)
T 3hjh_A 102 ------QRGVLIVPVN----TLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 (483)
T ss_dssp ------CSSEEEEEHH----HHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHH
T ss_pred ------CCCEEEEEHH----HHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHH
Confidence 4567777744 22222222 2344555555566777777753
No 239
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=22.68 E-value=1.8e+02 Score=26.69 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=28.3
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHHhc-CCCceEEEEecCCCHHHH
Q 029910 22 RRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETER 65 (185)
Q Consensus 22 ~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~l~g~~~~~~R 65 (185)
....+++||.|+ ...+......+.. .+...+..+||+......
T Consensus 283 ~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~ 326 (800)
T 3mwy_W 283 RRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDT 326 (800)
T ss_dssp HSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHH
T ss_pred cCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHH
Confidence 455689999998 4555655555543 334788889987554443
No 240
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=22.41 E-value=18 Score=31.22 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecCCCH
Q 029910 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~~~~ 62 (185)
.+.+++|+||.+-..+...+..|...|.-.+..+.|++..
T Consensus 423 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 423 NKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp ----------------------------------------
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 3458999999999888999999998884368888888654
No 241
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=22.06 E-value=2.3e+02 Score=20.51 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=39.7
Q ss_pred ChhhHHHHHHHHhc-CCCceEEEEecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCc
Q 029910 34 SRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL 112 (185)
Q Consensus 34 ~~~~~~~l~~~L~~-~~~~~~~~l~g~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~ 112 (185)
|...++.+++.+.. .| +.+..++-.-.. .+++... --++++|++
T Consensus 18 T~~~a~~i~~~l~~~~g-~~v~~~~l~~~~------~~~l~~a------------------------D~ii~gsP~---- 62 (188)
T 2ark_A 18 TKKMAELVAEGARSLEG-TEVRLKHVDEAT------KEDVLWA------------------------DGLAVGSPT---- 62 (188)
T ss_dssp HHHHHHHHHHHHHTSTT-EEEEEEETTTCC------HHHHHHC------------------------SEEEEEEEC----
T ss_pred HHHHHHHHHHHHhhcCC-CeEEEEEhhhCC------HHHHHhC------------------------CEEEEEeCc----
Confidence 45566677777776 65 566666532111 2344443 347888887
Q ss_pred ccCcCCCCCCcEEEEcCCCCCHHHHHHHHhh
Q 029910 113 LSSGESAISARVLINYELPTKKETYIRRMTT 143 (185)
Q Consensus 113 ~~~G~d~~~v~~VI~~d~P~~~~~yiqR~GR 143 (185)
.++++|.....++.++.+
T Consensus 63 -------------y~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 63 -------------NMGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp -------------BTTBCCHHHHHHHHHTGG
T ss_pred -------------cCCcCCHHHHHHHHHHhh
Confidence 356788889999999865
No 242
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.57 E-value=79 Score=28.42 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---CCCceEEEEecCCCHHH
Q 029910 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETE 64 (185)
Q Consensus 25 ~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~l~g~~~~~~ 64 (185)
+.++++-++++.-+...++.++. .| +++..++|+....+
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g-~~v~~~~G~~~~~~ 116 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIG-FKVAMTSGDYDTDD 116 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGT-CCEEECCSCSSSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCC-CEEEEEeCCCCCch
Confidence 47888888998888888877743 35 78888888866544
No 243
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.26 E-value=77 Score=22.25 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=35.9
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHhhhcCCCCEEEEEeeCchHHHHHHHHHHhCCcc
Q 029910 117 ESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIV 174 (185)
Q Consensus 117 ~d~~~v~~VI~~d~P~~~~~yiqR~GR~~~~~g~~i~~v~~~e~~~~~~l~~~~~~~~ 174 (185)
-|+|++|+++-+-.|.....++..+++.+-+ . +.|-.+-....+.++.+..|.++
T Consensus 54 ~dlp~vDlavi~~p~~~v~~~v~e~~~~g~k-~--v~~~~G~~~~e~~~~a~~~Girv 108 (122)
T 3ff4_A 54 PVIEGVDTVTLYINPQNQLSEYNYILSLKPK-R--VIFNPGTENEELEEILSENGIEP 108 (122)
T ss_dssp CCCTTCCEEEECSCHHHHGGGHHHHHHHCCS-E--EEECTTCCCHHHHHHHHHTTCEE
T ss_pred HHCCCCCEEEEEeCHHHHHHHHHHHHhcCCC-E--EEECCCCChHHHHHHHHHcCCeE
Confidence 3677799999999999999999999876432 2 33333333344455555555543
No 244
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=20.79 E-value=19 Score=25.67 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=24.0
Q ss_pred CCCCcEEEEcCChhhHHHH------HHHHh--cCCCceEEEEecCCC
Q 029910 23 RPGLPMIVCCSSRDELDAV------CSAVS--NLADISFSSLHSDLA 61 (185)
Q Consensus 23 ~~~~~~IIF~~~~~~~~~l------~~~L~--~~~~~~~~~l~g~~~ 61 (185)
...+++||||.+-..+... +..|. ..|+-.+..|.|++.
T Consensus 76 ~~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~ 122 (153)
T 2vsw_A 76 DCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFA 122 (153)
T ss_dssp CTTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred CCCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHH
Confidence 4568899999875433221 33343 225447889999854
No 245
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=20.60 E-value=1.1e+02 Score=23.85 Aligned_cols=36 Identities=0% Similarity=0.036 Sum_probs=22.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhcCC---CceEEEEecCCC
Q 029910 26 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLA 61 (185)
Q Consensus 26 ~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~l~g~~~ 61 (185)
.++||.|+++.-+....+.+...+ ...+..++++.+
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 196 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS 196 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCS
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCc
Confidence 478888888777777777666543 134556665543
No 246
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=20.11 E-value=1.6e+02 Score=21.00 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHccCCCCCcEEEEcCChhhHHHHHHHHhcCCCceEEEEecC
Q 029910 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 59 (185)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l~g~ 59 (185)
.+.+.++|..|-......++.++..+.-+....++..|.+.|++.-...+.+
T Consensus 4 ~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~ 55 (130)
T 3u5c_W 4 SSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDD 55 (130)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECC
T ss_pred ccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeecc
Confidence 4677888888766555556666666777888999999999998776666543
Done!