BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029912
MKNCRGSTCIFCVLLLAMLAGGDEGAPKSKNKENCTYAVTIETTCTKGAETSNPVSLRFG
DTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPICYLYL
KLGGEDDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVWHGSDICDREVTPFGIKHKRKV
LTLKP

High Scoring Gene Products

Symbol, full name Information P value
AT5G62200 protein from Arabidopsis thaliana 7.9e-14
AT2G41475 protein from Arabidopsis thaliana 1.9e-12
ATS3
AT5G07190
protein from Arabidopsis thaliana 1.4e-09
AT5G62210 protein from Arabidopsis thaliana 3.3e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029912
        (185 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167908 - symbol:AT5G62200 "AT5G62200" species...   179  7.9e-14   1
TAIR|locus:4515102981 - symbol:AT2G41475 "AT2G41475" spec...   166  1.9e-12   1
TAIR|locus:2182865 - symbol:ATS3 "AT5G07190" species:3702...   139  1.4e-09   1
TAIR|locus:2167928 - symbol:AT5G62210 "AT5G62210" species...   128  3.3e-07   1


>TAIR|locus:2167908 [details] [associations]
            symbol:AT5G62200 "AT5G62200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0031225 "anchored to
            membrane" evidence=TAS] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009611 "response to wounding" evidence=RCA]
            [GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA]
            InterPro:IPR001024 GO:GO:0005774 EMBL:CP002688 GO:GO:0031225
            Gene3D:2.60.60.20 InterPro:IPR008976 SUPFAM:SSF49723
            InterPro:IPR010417 Pfam:PF06232 EMBL:BT010895 EMBL:AK175131
            EMBL:AK176035 IPI:IPI00523516 RefSeq:NP_201026.1 UniGene:At.29064
            ProteinModelPortal:Q6NPM5 STRING:Q6NPM5 PRIDE:Q6NPM5
            EnsemblPlants:AT5G62200.1 GeneID:836341 KEGG:ath:AT5G62200
            OMA:NGPCTYQ ProtClustDB:CLSN2916759 Genevestigator:Q6NPM5
            Uniprot:Q6NPM5
        Length = 190

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 49/154 (31%), Positives = 67/154 (43%)

Query:    35 CTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRK 94
             C Y V I T+C+    T + +S+ FGD     I    L                DD   K
Sbjct:    48 CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRL----------------DDPSTK 91

Query:    95 PFQACNVDEFQVTGPCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEY-FYFRRY 153
              F+ C+ D FQ+ GPC    ICY+YL   G D W P   ++     SH S    F +  Y
Sbjct:    92 TFEQCSSDTFQINGPCTYQ-ICYVYLYRSGPDGWIPNTVKIY----SHGSKAVTFPYNTY 146

Query:   154 LPRHVWHGSDIC----DREVTPFGIKHKRKVLTL 183
             +P  VW+G + C    D  V   G++  R V+ L
Sbjct:   147 VPESVWYGFNYCNSASDSNVLAIGLR--RSVIIL 178


>TAIR|locus:4515102981 [details] [associations]
            symbol:AT2G41475 "AT2G41475" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009506 "plasmodesma"
            evidence=IDA] InterPro:IPR001024 GO:GO:0009506 EMBL:CP002685
            Gene3D:2.60.60.20 InterPro:IPR008976 SUPFAM:SSF49723 EMBL:AK175164
            EMBL:AK175615 EMBL:AK175765 EMBL:AK221826 EMBL:AK221888
            EMBL:AK228257 IPI:IPI00521526 RefSeq:NP_001118501.1
            UniGene:At.43627 ProteinModelPortal:Q681K2 PRIDE:Q681K2
            EnsemblPlants:AT2G41475.1 GeneID:6240499 KEGG:ath:AT2G41475
            TAIR:At2g41475 OMA:CYLYLLR PhylomeDB:Q681K2 ProtClustDB:CLSN2925507
            Genevestigator:Q681K2 InterPro:IPR010417 Pfam:PF06232
            Uniprot:Q681K2
        Length = 179

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 30/79 (37%), Positives = 48/79 (60%)

Query:    88 LDDVPRKPFQACNVDEFQVTGPCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEY 147
             LDD   + F+ C+ D ++++GPC+   +CYLYL   G D W+P    V++  GS   S  
Sbjct:    85 LDDPSSRTFEKCSSDTYKISGPCM-RDVCYLYLLRQGSDGWKP--ENVKIY-GSSIRSVT 140

Query:   148 FYFRRYLPRHVWHGSDICD 166
             FY+  +LP  VW+G ++C+
Sbjct:   141 FYYNLFLPNSVWYGFNVCN 159

 Score = 117 (46.2 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 27/99 (27%), Positives = 48/99 (48%)

Query:    27 PKSKNKENCTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPT 86
             PK +N   C+Y V I+T+C+  + T + +S+ FGD    ++ VK L              
Sbjct:    40 PKLENAAACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRL-------------- 85

Query:    87 VLDDVPRKPFQACNVDEFQVTGPCVVSPICYLYLKLGGE 125
               DD   + F+ C+ D ++++GPC+        L+ G +
Sbjct:    86 --DDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSD 122


>TAIR|locus:2182865 [details] [associations]
            symbol:ATS3 "AT5G07190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=RCA;TAS] [GO:0031225 "anchored to membrane"
            evidence=TAS] [GO:0016020 "membrane" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=RCA] [GO:0009845
            "seed germination" evidence=RCA] [GO:0010162 "seed dormancy
            process" evidence=RCA] EMBL:CP002688 GO:GO:0031225 EMBL:AL163652
            GO:GO:0009793 InterPro:IPR008976 SUPFAM:SSF49723 InterPro:IPR010417
            Pfam:PF06232 ProtClustDB:CLSN2687047 IPI:IPI00523243 PIR:T48490
            RefSeq:NP_196336.1 UniGene:At.5049 ProteinModelPortal:Q9LYP6
            STRING:Q9LYP6 PRIDE:Q9LYP6 ProMEX:Q9LYP6 EnsemblPlants:AT5G07190.1
            GeneID:830610 KEGG:ath:AT5G07190 TAIR:At5g07190 OMA:SIEIYSE
            PhylomeDB:Q9LYP6 Genevestigator:Q9LYP6 Uniprot:Q9LYP6
        Length = 213

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 41/138 (29%), Positives = 60/138 (43%)

Query:    35 CTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRK 94
             C Y V + T+C     T + +S+ FGD     +    L    VR      P  L      
Sbjct:    34 CPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGL-VRG-----PGGLGK---- 83

Query:    95 PFQACNVDEFQVTGPCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEYFYFRRYL 154
                 C+ + FQV G C+  PIC LY+   G D W P   ++   EGS   S  F F + +
Sbjct:    84 ----CSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEI-YSEGS--KSVKFDFSKSV 136

Query:   155 PR-HVWHGSDICDREVTP 171
             P+ + W+G + C+    P
Sbjct:   137 PQLNTWYGHNNCNTTGRP 154


>TAIR|locus:2167928 [details] [associations]
            symbol:AT5G62210 "AT5G62210" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0031225
            "anchored to membrane" evidence=TAS] [GO:0080167 "response to
            karrikin" evidence=IEP] [GO:0009611 "response to wounding"
            evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
            evidence=RCA] [GO:0009718 "anthocyanin-containing compound
            biosynthetic process" evidence=RCA] [GO:0009744 "response to
            sucrose stimulus" evidence=RCA] [GO:0010224 "response to UV-B"
            evidence=RCA] InterPro:IPR001024 EMBL:CP002688 GO:GO:0031225
            GO:GO:0080167 EMBL:AB019235 Gene3D:2.60.60.20 InterPro:IPR008976
            SUPFAM:SSF49723 InterPro:IPR010417 Pfam:PF06232 EMBL:AY086825
            IPI:IPI00532880 RefSeq:NP_201027.1 UniGene:At.8930
            ProteinModelPortal:Q9LVB5 SMR:Q9LVB5 PRIDE:Q9LVB5 ProMEX:Q9LVB5
            EnsemblPlants:AT5G62210.1 GeneID:836342 KEGG:ath:AT5G62210
            TAIR:At5g62210 InParanoid:Q9LVB5 OMA:HEEESCP PhylomeDB:Q9LVB5
            ProtClustDB:CLSN2687047 Genevestigator:Q9LVB5 Uniprot:Q9LVB5
        Length = 223

 Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:    96 FQACNVDEFQVTGPCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEYFYFRRYLP 155
             F+ C+ D FQV G C+ + IC +Y+   G D W P   ++   EGS   S  F F + +P
Sbjct:    87 FEKCSSDTFQVKGKCL-NTICSVYIYRSGTDGWIPETVEI-YKEGS--KSVKFDFNKNVP 142

Query:   156 RHVWHGSDICDREVTP 171
              ++W+G++ C+    P
Sbjct:   143 ENIWYGNNYCNNTDLP 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       185   0.00080  110 3  11 22  0.42    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.20u 0.09s 16.29t   Elapsed:  00:00:02
  Total cpu time:  16.20u 0.09s 16.29t   Elapsed:  00:00:02
  Start:  Fri May 10 00:16:53 2013   End:  Fri May 10 00:16:55 2013

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