BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029912
         (185 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P59281|RHG39_MOUSE Rho GTPase-activating protein 39 OS=Mus musculus GN=Arhgap39 PE=1
           SV=2
          Length = 1107

 Score = 33.1 bits (74), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 106 VTGPCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVWHGSDIC 165
           VTG CV  P   + +K   ED W   F          ++S ++Y+     R VWH    C
Sbjct: 47  VTGECVWDPPAGVRIKRTSEDQWWELF--------DPNTSRFYYYSAASQRTVWHRPQNC 98

Query: 166 D 166
           D
Sbjct: 99  D 99


>sp|Q9C0H5|RHG39_HUMAN Rho GTPase-activating protein 39 OS=Homo sapiens GN=ARHGAP39 PE=1
           SV=2
          Length = 1083

 Score = 31.6 bits (70), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 106 VTGPCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVWHGSDIC 165
           VTG CV  P   + +K   E+ W   F          ++S ++Y+     R VWH    C
Sbjct: 47  VTGECVWDPPAGVRIKRTSENQWWELF--------DPNTSRFYYYNASTQRTVWHRPQGC 98

Query: 166 D 166
           D
Sbjct: 99  D 99


>sp|Q5U263|KDM2A_XENTR Lysine-specific demethylase 2A OS=Xenopus tropicalis GN=kdm2a PE=2
           SV=1
          Length = 1146

 Score = 30.4 bits (67), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 23  DEGAPKSKNKENCTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDP 82
           D G  K        +A   ET   +  +  N +SL F  TK  +++ +      +  VD 
Sbjct: 110 DVGTQKGIEMTMAQWAKYYETPEEEREKLYNVISLEFSHTKLENLVQRPTTVDQIDWVDN 169

Query: 83  LWPTVLDDVPRKPFQACNVDEFQ---VTGPCVVSPI-CY--LYLKLGGEDDW 128
           +WP  L D  R+      + E Q   V   C++S   CY   ++  GG   W
Sbjct: 170 IWPRHLKD--RQTESTNVIQEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVW 219


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,479,587
Number of Sequences: 539616
Number of extensions: 2945432
Number of successful extensions: 4821
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4819
Number of HSP's gapped (non-prelim): 3
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)