Query 029912
Match_columns 185
No_of_seqs 109 out of 129
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 1E-49 2.2E-54 314.7 12.9 116 30-165 9-125 (125)
2 cd01754 PLAT_plant_stress PLAT 99.9 1.5E-25 3.2E-30 177.3 13.2 113 35-158 1-118 (129)
3 cd00113 PLAT PLAT (Polycystin- 99.9 2E-23 4.4E-28 156.8 13.5 111 35-165 1-114 (116)
4 cd01753 PLAT_LOX PLAT domain o 99.9 2.1E-21 4.6E-26 149.1 12.6 103 36-159 2-107 (113)
5 cd01752 PLAT_polycystin PLAT/L 99.9 1.1E-20 2.5E-25 145.3 13.1 104 36-158 2-108 (120)
6 cd01756 PLAT_repeat PLAT/LH2 d 99.8 2.6E-20 5.6E-25 143.1 13.4 103 36-158 2-108 (120)
7 cd02899 PLAT_SR Scavenger rece 99.8 2E-18 4.4E-23 133.3 11.9 97 36-157 2-99 (109)
8 smart00308 LH2 Lipoxygenase ho 99.8 2.9E-17 6.2E-22 121.7 13.3 102 36-156 2-104 (105)
9 PF01477 PLAT: PLAT/LH2 domain 99.7 3.9E-17 8.5E-22 120.5 8.2 101 37-158 1-104 (113)
10 cd01757 PLAT_RAB6IP1 PLAT/LH2 99.5 9.5E-14 2.1E-18 108.2 12.1 96 36-160 2-101 (114)
11 cd01755 PLAT_lipase PLAT/ LH2 98.6 1.1E-06 2.4E-11 68.1 13.1 95 35-151 1-105 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 98.0 0.00012 2.7E-09 58.6 11.8 78 35-131 1-79 (137)
13 cd01759 PLAT_PL PLAT/LH2 domai 93.1 2.2 4.9E-05 33.3 10.7 88 36-148 2-96 (113)
14 TIGR03230 lipo_lipase lipoprot 85.7 10 0.00023 35.9 10.8 90 37-148 311-412 (442)
15 COG3354 FlaG Putative archaeal 81.4 9.8 0.00021 31.7 7.7 42 32-73 67-111 (154)
16 KOG2080 Uncharacterized conser 71.5 7.1 0.00015 40.7 5.1 110 34-174 973-1097(1295)
17 KOG1692 Putative cargo transpo 68.2 7.1 0.00015 33.8 3.8 99 2-137 2-110 (201)
18 KOG4063 Major epididymal secre 55.4 10 0.00022 31.7 2.4 33 26-63 36-68 (158)
19 PRK02710 plastocyanin; Provisi 44.0 42 0.0009 25.6 4.1 32 36-71 30-61 (119)
20 PF08695 Coa1: Cytochrome oxid 37.6 1.3E+02 0.0029 22.4 6.0 39 98-137 66-106 (116)
21 PF07172 GRP: Glycine rich pro 35.7 19 0.00042 27.3 1.1 8 4-11 3-10 (95)
22 PF12276 DUF3617: Protein of u 31.0 2E+02 0.0043 22.4 6.2 45 93-137 87-140 (162)
23 COG1430 Uncharacterized conser 24.5 1.1E+02 0.0024 24.6 3.6 39 42-80 51-89 (126)
24 PF02408 CUB_2: CUB-like domai 24.2 1.1E+02 0.0025 23.1 3.6 40 31-70 40-83 (120)
25 KOG1693 emp24/gp25L/p24 family 24.1 1.6E+02 0.0035 25.8 4.8 43 26-70 28-76 (209)
26 PF04648 MF_alpha: Yeast matin 22.4 46 0.001 17.2 0.7 11 75-85 1-11 (13)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=1e-49 Score=314.68 Aligned_cols=116 Identities=42% Similarity=0.906 Sum_probs=109.8
Q ss_pred CCCCCccEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCC-CCCcCCceeeeeeec
Q 029912 30 KNKENCTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPR-KPFQACNVDEFQVTG 108 (185)
Q Consensus 30 ~~~~~C~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~-~~FErcs~D~F~v~G 108 (185)
+++++|+|+|+|||||+++|+|+|+|||+|+|++||+|+++ .||+|.+ ++||||++|+|+|+|
T Consensus 9 ~~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~----------------~Ld~p~~~~~FErCs~DtF~v~G 72 (125)
T PF06232_consen 9 QQAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVP----------------RLDDPGSGDTFERCSTDTFQVTG 72 (125)
T ss_pred hcCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEc----------------cCCCCCccCchhcCCcceeEeec
Confidence 35778999999999999999999999999999999999999 4888887 999999999999999
Q ss_pred CCCCCCcEEEEEEEcCCCCceeeEEEEEeeeCCCCCeEEEEeceecCCCcceeecCC
Q 029912 109 PCVVSPICYLYLKLGGEDDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVWHGSDIC 165 (185)
Q Consensus 109 pC~~~~IC~l~L~rdGsdgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~vwyg~n~C 165 (185)
+|+. +||+|||+|+|+|||+||||+|+ +.+..+++|+|++|||+|+|||||+|
T Consensus 73 ~C~~-~IC~lyL~r~G~dGW~Pe~V~Iy---~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 73 PCLY-QICYLYLYRSGSDGWKPEWVQIY---GSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred ccCC-cccEEEEEEccCCCCEeCeEEEE---EcCCCCeEEECCCcCCCCCcccccCC
Confidence 9995 99999999999999999999996 56778999999999999999999999
No 2
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.93 E-value=1.5e-25 Score=177.26 Aligned_cols=113 Identities=25% Similarity=0.483 Sum_probs=99.6
Q ss_pred ccEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCC
Q 029912 35 CTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSP 114 (185)
Q Consensus 35 C~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~ 114 (185)
|.|+|+|+||+...|||+++|+|+|.+.+|+...+..+.+| ++|+++.++.||||++|+|.|..++..++
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~----------~~l~~~~~~~FerG~~d~F~v~~~~~lG~ 70 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAW----------GGLMGAGHDYFERGNLDRFSGRGPCLPSP 70 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEccccc----------ccccccccccccCCCccEEEEEeccCCCC
Confidence 89999999999999999999999999999998887755544 47888899999999999999999998899
Q ss_pred cEEEEEEEcCC---CCceeeEEEEEeeeCCC--CCeEEEEeceecCCCc
Q 029912 115 ICYLYLKLGGE---DDWRPGFAQVRVLEGSH--HSSEYFYFRRYLPRHV 158 (185)
Q Consensus 115 IC~l~L~rdGs---dgW~pe~V~V~~~~g~~--~~~~~F~v~~wLp~~v 158 (185)
||+|+|.+|++ ++||+++|+|+. ...+ .....|++++||+.+.
T Consensus 71 l~~irI~HDn~G~~p~W~l~~V~V~d-~~~~~~~~~~~F~c~rWLa~d~ 118 (129)
T cd01754 71 PCWMNLTSDGTGNHPGWYVNYVEVTQ-AGQHAPCMQHLFAVEQWLATDE 118 (129)
T ss_pred eEEEEEEECCCCCCCCcccCEEEEEe-CCCCCcCcEEEEEecEeccCCC
Confidence 99999999998 999999999984 2222 2358899999998764
No 3
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.91 E-value=2e-23 Score=156.76 Aligned_cols=111 Identities=26% Similarity=0.356 Sum_probs=97.2
Q ss_pred ccEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCC
Q 029912 35 CTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSP 114 (185)
Q Consensus 35 C~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~ 114 (185)
|.|+|+|+||+...|||+++|+|.|.+++|+..... |++.... ||||++|+|.+..+|..++
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~-----------------l~~~~~~-f~~g~~~~f~v~~~~~lG~ 62 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIP-----------------ILDGPGS-FERGSTDTFQIDLKLDIGD 62 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEE-----------------ccCCCCc-ccCCCceEEEEeccCCCcC
Confidence 789999999999999999999999999999988876 2222222 9999999999999977799
Q ss_pred cEEEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCcceeecCC
Q 029912 115 ICYLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVWHGSDIC 165 (185)
Q Consensus 115 IC~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~vwyg~n~C 165 (185)
|+.|+|.++++ ++|+|++|+|+. ......+.|++++||+.+.+|..++|
T Consensus 63 i~~v~l~~d~~g~~~~W~l~~V~V~~--~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 63 ITKVYLRRDGSGLSDGWYCESITVQA--LGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred eEEEEEEECCCCCCCCEEEeEEEEEe--CCCCCEEEEEeCCCcccCCCCCceee
Confidence 99999999998 699999999973 44456799999999999999887765
No 4
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.87 E-value=2.1e-21 Score=149.13 Aligned_cols=103 Identities=22% Similarity=0.225 Sum_probs=90.2
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCc
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPI 115 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~I 115 (185)
.|.|+|+||....|||+++|+|.|.+..|+.-.+. |++...+ ||||++|+|.+..++..++|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S~~~~-----------------L~~~~~~-FerG~~d~F~v~~~~~lG~l 63 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGESEKQL-----------------LDRPGYD-FERGAVDEYKVKVPEDLGEL 63 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCcccCEE-----------------cCCCCCc-cCCCCeeEEEEecccCCCCc
Confidence 59999999999999999999999999999865544 6665554 99999999999998777999
Q ss_pred EEEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCcc
Q 029912 116 CYLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVW 159 (185)
Q Consensus 116 C~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~vw 159 (185)
++|.|.+|++ ++|||++|+|+ +.......|++++||..+.-
T Consensus 64 ~~i~i~~d~~g~~~~W~l~~V~V~---~~~~~~~~F~c~rWl~~~~~ 107 (113)
T cd01753 64 LLVRLRKRKYLLFDAWFCNYITVT---GPGGDEYHFPCYRWIEGYGT 107 (113)
T ss_pred EEEEEEECCCCCCCCeeecEEEEE---cCCCCEEEEEhHHeECCCCE
Confidence 9999999997 99999999997 33356688999999998753
No 5
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.85 E-value=1.1e-20 Score=145.27 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=92.3
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCc
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPI 115 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~I 115 (185)
.|+|+|+||...+|||+++|+|.|.+..|+.-.+. |+++.++.||||++|+|.+..++..+++
T Consensus 2 ~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s~~~~-----------------L~~~~~~~F~rG~~~~f~i~~~~dlG~l 64 (120)
T cd01752 2 LYLVTVFTGWRRGAGTTAKVTITLYGAEGESEPHH-----------------LRDPEKPIFERGSVDSFLLTTPFPLGEL 64 (120)
T ss_pred EEEEEEEECCCCCCCcccEEEEEEEeCCCCcccEE-----------------cCCCCccceeCCCeeEEEecCccCCCCc
Confidence 59999999999999999999999999999876554 6666678999999999999998777999
Q ss_pred EEEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCc
Q 029912 116 CYLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHV 158 (185)
Q Consensus 116 C~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~v 158 (185)
++|.|.+|++ ++|+|++|+|+. ........|++++||..+.
T Consensus 65 ~~i~l~hd~~g~~~~W~l~~V~V~~--~~t~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 65 QSIRLWHDNSGLSPSWYLSRVIVRD--LQTGKKWFFLCNDWLSVEE 108 (120)
T ss_pred cEEEEEECCCCCCCCeEEEEEEEEE--CCCCcEEEEEeCcEECCcC
Confidence 9999999997 999999999984 4445678999999998764
No 6
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.85 E-value=2.6e-20 Score=143.11 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCC-CCCCCcCCceeeeeeecCCCCCC
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDV-PRKPFQACNVDEFQVTGPCVVSP 114 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~-~~~~FErcs~D~F~v~GpC~~~~ 114 (185)
.|+|+|+||...+|||+++|+|.|.+..|+.-.+. |+++ ..+.||||++|+|.+....+ ++
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s~~~~-----------------L~~~~~~~~FerGs~d~F~i~~~~l-G~ 63 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDTGKRK-----------------LKKSNNKNKFERGQTDKFTVEAVDL-GK 63 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCccccEE-----------------ccCCCcCCcccCCCeEEEEEEecCC-CC
Confidence 59999999999999999999999999999865443 5555 67899999999999999776 89
Q ss_pred cEEEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCc
Q 029912 115 ICYLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHV 158 (185)
Q Consensus 115 IC~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~v 158 (185)
+..|.|.+|++ ++|+|++|+|+. ........|++++||..+.
T Consensus 64 l~~i~i~~d~~g~~~~W~~~~V~V~~--~~~~~~~~F~~~~Wl~~~~ 108 (120)
T cd01756 64 LKKIRIGHDNSGLGAGWFLDKVEIRE--PGTGDEYTFPCNRWLDKDE 108 (120)
T ss_pred eEEEEEEECCCCCCCCcEEeEEEEEE--CCCceEEEEEeCCccCCCC
Confidence 99999999998 899999999973 4456679999999999864
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.78 E-value=2e-18 Score=133.33 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=83.5
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCc
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPI 115 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~I 115 (185)
.|+|+|+||....|||+++|+|.|.+..|..-... |++ .||||++|+|.++...+ +++
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S~~~~-----------------L~~----~F~~G~~d~F~v~~~dL-G~l 59 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRSNPKT-----------------LSQ----GFYPGSLKRIRFRAADV-GDI 59 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCcCCEE-----------------ccC----ccCCCceEEEEECcccc-Cce
Confidence 59999999999999999999999999999654443 443 59999999999996666 999
Q ss_pred EEEEEEEcCC-CCceeeEEEEEeeeCCCCCeEEEEeceecCCC
Q 029912 116 CYLYLKLGGE-DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRH 157 (185)
Q Consensus 116 C~l~L~rdGs-dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~ 157 (185)
-.|.|.++|. |+|||++|+|+. +......|++++||...
T Consensus 60 ~~i~l~n~g~~~~Wf~~~V~V~~---~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 60 NAIILSNTALNDPWYCDYVRIKS---EDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EEEEEECCCCCCCceeeEEEEEC---CCCCEEEEEcceeeCCc
Confidence 9999988886 999999999973 44566889999999763
No 8
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.75 E-value=2.9e-17 Score=121.66 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=84.4
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCc
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPI 115 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~I 115 (185)
.|+|+|+||....|||+++|+|+|.+..|..-... ++......|||+++|+|.+..+...+++
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s~~~~-----------------~~~~~~~~f~~g~~~~f~v~~~~~lG~l 64 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDGKESK-----------------LDYLFKGIFARGSTYEFTFDVDEDFGEL 64 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCCccee-----------------ccccCCccccCCceEEEEEecccCCCCc
Confidence 59999999999999999999999999997521111 1111223599999999999998777999
Q ss_pred EEEEEEEcC-CCCceeeEEEEEeeeCCCCCeEEEEeceecCC
Q 029912 116 CYLYLKLGG-EDDWRPGFAQVRVLEGSHHSSEYFYFRRYLPR 156 (185)
Q Consensus 116 C~l~L~rdG-sdgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~ 156 (185)
..|.|++++ .++||+++|+|.- ..+.....|++++||..
T Consensus 65 ~~v~v~~d~~~~~w~l~~V~V~~--~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 65 GAVKIKNEHRHPEWFLKSITVKD--LPTGGKYHFPCNSWVYP 104 (105)
T ss_pred EEEEEEeCCCCCCeEEEEEEEEE--CCCCCEEEEEcCceeCC
Confidence 999999999 6999999999973 45566799999999964
No 9
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.71 E-value=3.9e-17 Score=120.55 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCcE
Q 029912 37 YAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPIC 116 (185)
Q Consensus 37 YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~IC 116 (185)
|+|+|+||....|||+++|+|.|.+.+|+.....-+..+ ...+ +++|+|.+..+...++|.
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~~l~~~~-----------------~~~~--g~~d~F~i~~~~~lG~i~ 61 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEIELLDPS-----------------GFNF--GSTDTFTIETPEDLGEIQ 61 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEEEEEEEE-----------------ETST--TEEEEEEEEESSCGCSEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceEEEeeee-----------------eccc--CceEEeeeeecccCCCCc
Confidence 999999999999999999999999999997776533221 1222 999999999976669999
Q ss_pred EEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCc
Q 029912 117 YLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHV 158 (185)
Q Consensus 117 ~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~v 158 (185)
.|.|.+++. ++|+|++|+|+. ......+.|++++||..+.
T Consensus 62 ~i~i~~~~~~~~~~W~l~~V~V~~--~~~~~~~~F~~~~Wl~~~~ 104 (113)
T PF01477_consen 62 KIRIWHDGSGPSPSWYLDSVVVTD--GETGRTYTFPCNRWLDPDK 104 (113)
T ss_dssp EEEEEEESSSSSSEEEEEEEEEEE--TTTSEEEEEEEEEEESTTE
T ss_pred EEEEEEccCCCccceEEEEEEEEe--CCCCcEEEEEcCCEECCCC
Confidence 999999965 999999999974 5566779999999998865
No 10
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.55 E-value=9.5e-14 Score=108.19 Aligned_cols=96 Identities=13% Similarity=0.128 Sum_probs=78.0
Q ss_pred cEEEEEEcCCC-CCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCC
Q 029912 36 TYAVTIETTCT-KGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSP 114 (185)
Q Consensus 36 ~YtV~IkTgc~-~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~ 114 (185)
.|.|+|.||.. .+|||+++|+|.+.+..|..-.. .|++ +.| .|.+....+ ++
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~~~-----------------~L~~---~~f------~~~v~~~~L-G~ 54 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGETPPL-----------------QIPK---NSL------EMTFDCQNL-GK 54 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCcCCE-----------------EecC---Cce------EEEEecCCc-CC
Confidence 59999999999 59999999999999999964332 2432 233 577776666 89
Q ss_pred cEEEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCcce
Q 029912 115 ICYLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVWH 160 (185)
Q Consensus 115 IC~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~vwy 160 (185)
+.+|.|.+|++ ++||+++|+|+. -.......|++++||+.+..-
T Consensus 55 L~~irIwHDnsG~~~~Wfl~~V~V~d--~~t~~~~~FpC~rWLa~~~~D 101 (114)
T cd01757 55 LTTVQIGHDNSGLLAKWLVEYVMVRN--EITGHTYKFPCGRWLGEGVDD 101 (114)
T ss_pred cEEEEEEECCCCCCCCeeeeEEEEEe--CCCCCEEEEecCceecCCCCc
Confidence 99999999998 999999999984 245566889999999987644
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.64 E-value=1.1e-06 Score=68.11 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=75.7
Q ss_pred ccEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCC
Q 029912 35 CTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSP 114 (185)
Q Consensus 35 C~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~ 114 (185)
+.|.|+|.|+....|||+++|+|+|++..|+.-..+ |.+ +.||+|++|+|-+.-+-..++
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s~~~~-----------------l~~---~~~~~g~~~sfli~t~~~lG~ 60 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGETEQLP-----------------IVL---GELKPNKTYSFLIDTEVDIGD 60 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCcccEE-----------------EeC---CcccCCCEEEEEEEcCCCccc
Confidence 369999999999999999999999999998864443 221 247999999999965555699
Q ss_pred cEEEEEEEcCC----------CCceeeEEEEEeeeCCCCCeEEEEec
Q 029912 115 ICYLYLKLGGE----------DDWRPGFAQVRVLEGSHHSSEYFYFR 151 (185)
Q Consensus 115 IC~l~L~rdGs----------dgW~pe~V~V~~~~g~~~~~~~F~v~ 151 (185)
+-.|.++.|++ +.|+.+.|.|.. |.+.....|=..
T Consensus 61 l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~--get~~~~~FC~~ 105 (120)
T cd01755 61 LLKVKFKWENNVINSNSGETLPKLGARKIRVKS--GETQKKFTFCSQ 105 (120)
T ss_pred eEEEEEEEcCCCcccccccCCCcEEEEEEEEEE--CCCCCEEEEECC
Confidence 99999999887 288899999974 666555555433
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.02 E-value=0.00012 Score=58.63 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=59.8
Q ss_pred ccEEEEEEcCCCCCCC-CCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCC
Q 029912 35 CTYAVTIETTCTKGAE-TSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVS 113 (185)
Q Consensus 35 C~YtV~IkTgc~~~ag-Tdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~ 113 (185)
+.|.|+|.|+....++ |+++|+|+|++..|+.-..+ |.++ +.+|+|++|+|-+.-+-..+
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~~~-----------------l~~~--~~~~~G~t~sfLi~t~~dlG 61 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGESENLP-----------------LTLP--EGITGNKTNSFLITTEKDIG 61 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcccCEE-----------------EecC--cccCCCCeEEEEEECCCCcC
Confidence 4699999999998888 99999999999998854443 2222 35699999999996555559
Q ss_pred CcEEEEEEEcCCCCceee
Q 029912 114 PICYLYLKLGGEDDWRPG 131 (185)
Q Consensus 114 ~IC~l~L~rdGsdgW~pe 131 (185)
++-.|.++..+..+|.+.
T Consensus 62 ~L~~vk~~W~~n~~~~~s 79 (137)
T cd01758 62 DLLMLKLKWEGSSLWSNS 79 (137)
T ss_pred CEEEEEEEEeCCCCCChh
Confidence 999999955554344433
No 13
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=93.05 E-value=2.2 Score=33.28 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=64.6
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCc
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPI 115 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~I 115 (185)
.|.|.|+-+.... ++..++|+|++..|+.-..+ + ..+.||.+++-+|-+.-+=..+++
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s~~~~-----------------i---~~g~l~pg~tys~li~~d~dvG~l 59 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNTRQYE-----------------I---FKGTLKPGNTYSAFIDVDVDVGPL 59 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCccceE-----------------E---EeeeecCCCEEEEEEEccCCCCCE
Confidence 4889998876543 89999999999999864443 1 134699999999999766666999
Q ss_pred EEEEEEEcCCCCce-------eeEEEEEeeeCCCCCeEEE
Q 029912 116 CYLYLKLGGEDDWR-------PGFAQVRVLEGSHHSSEYF 148 (185)
Q Consensus 116 C~l~L~rdGsdgW~-------pe~V~V~~~~g~~~~~~~F 148 (185)
-.|.+..+++ -|- .++|.|. .|.+...+.|
T Consensus 60 ~~Vkf~W~~~-~~n~~~p~~~~~~I~Vq--~Ge~~~~~~F 96 (113)
T cd01759 60 TKVKFIWNNN-VINITLPKVGAEKITVQ--SGKDGKVFNF 96 (113)
T ss_pred EEEEEEEeCC-ccCCCCCeEEEEEEEEE--eCCCccEEEE
Confidence 9999999886 332 5677765 3544444555
No 14
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=85.67 E-value=10 Score=35.90 Aligned_cols=90 Identities=14% Similarity=0.234 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCC-CCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCCCc
Q 029912 37 YAVTIETTCTKG-AETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVSPI 115 (185)
Q Consensus 37 YtV~IkTgc~~~-agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~~I 115 (185)
|.|.|+.+.... ..++..++|+|++..|+.-..+ + ....||-+++-+|-|.-+-..+++
T Consensus 311 y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~-----------------~---~~~~~~~~~t~~~~i~~~~~~g~~ 370 (442)
T TIGR03230 311 YQVKVHFFGKTSLSHTDQPMKISLYGTHGEKENIP-----------------F---TLPEVSTNKTYSFLITTDVDIGEL 370 (442)
T ss_pred EEEEEEEeccccccccCCcEEEEEEcCCCCccceE-----------------E---eeeeecCCCeEEEEEecccCCCce
Confidence 677777765432 3577788888888877754433 1 123599999999999777667999
Q ss_pred EEEEEEEcCC--CCce---------eeEEEEEeeeCCCCCeEEE
Q 029912 116 CYLYLKLGGE--DDWR---------PGFAQVRVLEGSHHSSEYF 148 (185)
Q Consensus 116 C~l~L~rdGs--dgW~---------pe~V~V~~~~g~~~~~~~F 148 (185)
-.|.+..+++ ..|. .++|+|. .|.+...++|
T Consensus 371 ~~v~~~w~~~~~~~~~~~~~~~~~~~~~i~v~--~ge~~~~~~f 412 (442)
T TIGR03230 371 LMVKLKWEKDTYISWSDWWSSPGFHIRKLRIK--SGETQSKVIF 412 (442)
T ss_pred EEEEEEEeCCCcccchhhhcCCceeEEEEEEE--eCCCccEEEE
Confidence 9999999988 3776 6777776 3555444555
No 15
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=81.41 E-value=9.8 Score=31.70 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCccEEEEEE-cCCCCCCCCCcceEEEEec--CCCCeeEEeecc
Q 029912 32 KENCTYAVTIE-TTCTKGAETSNPVSLRFGD--TKSTDILVKHLN 73 (185)
Q Consensus 32 ~~~C~YtV~Ik-Tgc~~~agTdd~IsI~fgD--a~Gn~v~~~~L~ 73 (185)
.++-+|+++|| ||..+.+.+.+.|.+-.=+ ..++.+.+...+
T Consensus 67 ~g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~ 111 (154)
T COG3354 67 DGPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVN 111 (154)
T ss_pred CCceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecC
Confidence 35678999998 7888889999999886644 234444444333
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=71.45 E-value=7.1 Score=40.73 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=73.0
Q ss_pred CccEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeecccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCCC
Q 029912 34 NCTYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVVS 113 (185)
Q Consensus 34 ~C~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~~ 113 (185)
.=.|.|.|-|| ++.+|.++|-|...+.-+..-.+. +.|+.| .|...-.=+ |
T Consensus 973 k~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT~~i~------------~~~n~~--------------~f~F~~kNL-G 1023 (1295)
T KOG2080|consen 973 KMDYQVVIVTG--SGRGAIPAIWVTVEGSLCSTPPIM------------LKPNTP--------------LFKFDHKNL-G 1023 (1295)
T ss_pred ccceEEEEEeC--CCCcccCceEEEEecccCCCCcee------------eCCCCc--------------eeEEecccc-c
Confidence 45699999999 788999999999998887643333 111111 122221112 5
Q ss_pred CcEEEEEEEcCC---CCceeeEEEEEeeeCCCCCeEEEEeceecCCCcc-----------e-eecCCCCCCCcccc
Q 029912 114 PICYLYLKLGGE---DDWRPGFAQVRVLEGSHHSSEYFYFRRYLPRHVW-----------H-GSDICDREVTPFGI 174 (185)
Q Consensus 114 ~IC~l~L~rdGs---dgW~pe~V~V~~~~g~~~~~~~F~v~~wLp~~vw-----------y-g~n~C~~~~~~~g~ 174 (185)
-.--|.+-++.+ +-|+.|||-|+. + -.+..+.||+.+|+-+++- . ..|-|++...+.|-
T Consensus 1024 ~LtT~rIGHdnS~~~~kW~vEyV~vRN-E-iTG~TYKFPCGrw~G~gedi~~~~~L~~~p~V~~~~~~~~~i~q~~ 1097 (1295)
T KOG2080|consen 1024 ILSTLRIGHQQSEKPVQWFLEYVLVRN-E-ITGQTYKFPCGRWFGNGEDITLERMLVAEPFVEYDGNDNGIIEQGE 1097 (1295)
T ss_pred eeeeEEecccCCCcchHHHHHHhhhhc-e-eccceeccccccccCCcccchhhhhhhcCceeecCCccCCcCCCCC
Confidence 556678888877 899999999874 2 2344689999999977521 1 16778776555553
No 17
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.23 E-value=7.1 Score=33.78 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCCCCCCCCccE---------EEEEEcCCCCCCCCCcceEEEEecCCCCeeEEeec
Q 029912 2 KNCRGSTCIFCVLLLAMLAGGDEGAPKSKNKENCTY---------AVTIETTCTKGAETSNPVSLRFGDTKSTDILVKHL 72 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~Y---------tV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L 72 (185)
..-.++++|+|+||+...+-+=++.+|. +.|-| +|..++.. |-...|++.+.+++|++++-
T Consensus 2 ~~~~~~~vll~~L~~~~~~~~is~~ah~---eeCf~e~~~~gd~~~vsF~v~~----gg~~~vd~~I~gP~~~~i~~--- 71 (201)
T KOG1692|consen 2 ASLASVIVLLGLLFISAAGYGISLDAHE---EECFFENLEEGDKLSVSFEVID----GGFLGVDVEITGPDGKIIHK--- 71 (201)
T ss_pred cchhhHHHHHHHHHHHhhheeEEEccch---hhhHhhhhccCCEEEEEEEEec----CCccceeEEEECCCCchhhh---
Confidence 3345677888999886444444456665 56666 45555554 35556666677777666553
Q ss_pred ccccccccCCCCCccCCCCCCCCCcCCceeeeeeecCCCC-CCcEEEEEEEcCCCCceeeEEEEEe
Q 029912 73 NSKHVRQVDPLWPTVLDDVPRKPFQACNVDEFQVTGPCVV-SPICYLYLKLGGEDDWRPGFAQVRV 137 (185)
Q Consensus 73 ~~~~~~~~~~~~~~gLd~~~~~~FErcs~D~F~v~GpC~~-~~IC~l~L~rdGsdgW~pe~V~V~~ 137 (185)
+++-+.+.|....|=.. +.-|. .+...+=.|+.|.-++
T Consensus 72 -----------------------~~~~ssgk~tF~a~~~G~Y~fCF----~N~~s~mtpk~V~F~i 110 (201)
T KOG1692|consen 72 -----------------------GKRESSGKYTFTAPKKGTYTFCF----SNKMSTMTPKTVMFTI 110 (201)
T ss_pred -----------------------cccccCceEEEEecCCceEEEEe----cCCCCCCCceEEEEEE
Confidence 45555566665554321 34454 3444555677666554
No 18
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=55.44 E-value=10 Score=31.74 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCCCCCCCccEEEEEEcCCCCCCCCCcceEEEEecCC
Q 029912 26 APKSKNKENCTYAVTIETTCTKGAETSNPVSLRFGDTK 63 (185)
Q Consensus 26 ~p~~~~~~~C~YtV~IkTgc~~~agTdd~IsI~fgDa~ 63 (185)
+|.+.+-.+|.= |-|.-..||...|.|.|.-..
T Consensus 36 ~~~~V~i~~C~t-----~pC~lkKgt~~si~I~F~~~~ 68 (158)
T KOG4063|consen 36 TPLEVKIDGCPT-----TPCQLKKGTEASIQIDFAPSR 68 (158)
T ss_pred cceEEEecCCCC-----CceEEecCCeEEEEEEEeecc
Confidence 444445667764 488999999999999997544
No 19
>PRK02710 plastocyanin; Provisional
Probab=44.02 E-value=42 Score=25.65 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=22.8
Q ss_pred cEEEEEEcCCCCCCCCCcceEEEEecCCCCeeEEee
Q 029912 36 TYAVTIETTCTKGAETSNPVSLRFGDTKSTDILVKH 71 (185)
Q Consensus 36 ~YtV~IkTgc~~~agTdd~IsI~fgDa~Gn~v~~~~ 71 (185)
+++|.|.+.....+..-+.|.|.-||. |.+.|
T Consensus 30 ~~~V~~~~~~~~~~F~P~~i~v~~Gd~----V~~~N 61 (119)
T PRK02710 30 TVEVKMGSDAGMLAFEPSTLTIKAGDT----VKWVN 61 (119)
T ss_pred eEEEEEccCCCeeEEeCCEEEEcCCCE----EEEEE
Confidence 678888776555677888888887764 55553
No 20
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=37.65 E-value=1.3e+02 Score=22.38 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=33.0
Q ss_pred CCcee-eeeeecCCCCCCcEEEEEEEcCC-CCceeeEEEEEe
Q 029912 98 ACNVD-EFQVTGPCVVSPICYLYLKLGGE-DDWRPGFAQVRV 137 (185)
Q Consensus 98 rcs~D-~F~v~GpC~~~~IC~l~L~rdGs-dgW~pe~V~V~~ 137 (185)
+++.| +|.|+||-. ....+++-.|.+. +.|....++|..
T Consensus 66 ~g~a~~~~pV~G~k~-~G~v~~~a~r~~~~~~W~~~~~~v~~ 106 (116)
T PF08695_consen 66 KGRADLSFPVKGPKG-KGTVYVEATRSGGKDPWEILRLEVEI 106 (116)
T ss_pred CcEEEEEEEEEcCCC-cEEEEEEEEecCCCCceEEEEEEEEe
Confidence 77777 567899997 6889999999887 689999999975
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.75 E-value=19 Score=27.32 Aligned_cols=8 Identities=0% Similarity=-0.193 Sum_probs=3.5
Q ss_pred CCchhhHH
Q 029912 4 CRGSTCIF 11 (185)
Q Consensus 4 ~~~~~~~~ 11 (185)
.|.+|||.
T Consensus 3 SK~~llL~ 10 (95)
T PF07172_consen 3 SKAFLLLG 10 (95)
T ss_pred hhHHHHHH
Confidence 34445433
No 22
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=30.98 E-value=2e+02 Score=22.40 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=23.3
Q ss_pred CCCCcCCceeeeeee-------cCCCCCCcEEEEEEEcC--CCCceeeEEEEEe
Q 029912 93 RKPFQACNVDEFQVT-------GPCVVSPICYLYLKLGG--EDDWRPGFAQVRV 137 (185)
Q Consensus 93 ~~~FErcs~D~F~v~-------GpC~~~~IC~l~L~rdG--sdgW~pe~V~V~~ 137 (185)
...-+.|....|++. ..|.....=...-...+ ++..|-..++++.
T Consensus 87 ~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T PF12276_consen 87 PQENQDCTYTDVSRSGGTVTFTMSCTGPGGKATGMGETTTDSPTSYTGTMTMTS 140 (162)
T ss_pred cCCCCCCCEeeEEEeCCEEEEEEEeCCCCCceEEEEEEeeeCCCeEEEEEEEEe
Confidence 355677877776554 45654222122222222 2667777777664
No 23
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=1.1e+02 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.039 Sum_probs=31.3
Q ss_pred EcCCCCCCCCCcceEEEEecCCCCeeEEeeccccccccc
Q 029912 42 ETTCTKGAETSNPVSLRFGDTKSTDILVKHLNSKHVRQV 80 (185)
Q Consensus 42 kTgc~~~agTdd~IsI~fgDa~Gn~v~~~~L~~~~~~~~ 80 (185)
+..|.|-.-|.=.++|.|.|++|.-+.+.+|+-|..+.+
T Consensus 51 ~~~~~wMknt~lpLDiiFid~dg~i~~i~~~~P~~~~~~ 89 (126)
T COG1430 51 RRVAFWMKNTMLPLDIIFIDSDGRVVDIVELVPWSTYPC 89 (126)
T ss_pred ceeEEeeecCCcceEEEEEcCCCCEEEEEeccccccCCC
Confidence 445667788888899999999999999998777754433
No 24
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=24.18 E-value=1.1e+02 Score=23.14 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCCCccEEEEEEcCCCCC----CCCCcceEEEEecCCCCeeEEe
Q 029912 31 NKENCTYAVTIETTCTKG----AETSNPVSLRFGDTKSTDILVK 70 (185)
Q Consensus 31 ~~~~C~YtV~IkTgc~~~----agTdd~IsI~fgDa~Gn~v~~~ 70 (185)
..-+|+|+|.|-.|=.-. +.+++.-+|.+.|..|+...+.
T Consensus 40 ~n~~C~y~i~iP~G~~a~v~~~~~~~~~d~i~v~D~~g~~~~~~ 83 (120)
T PF02408_consen 40 ANQNCTYQINIPKGYYAKVTLSANLNDNDSITVTDSNGKSEYIT 83 (120)
T ss_pred CCCceEEEEEcCCceEEEEEEEEecCCCCEEEEEecCCCEEEee
Confidence 456999999988765432 3334466777788888875554
No 25
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.09 E-value=1.6e+02 Score=25.76 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCCCCCCCCccEEEEEEcCCC-C-----CCCCCcceEEEEecCCCCeeEEe
Q 029912 26 APKSKNKENCTYAVTIETTCT-K-----GAETSNPVSLRFGDTKSTDILVK 70 (185)
Q Consensus 26 ~p~~~~~~~C~YtV~IkTgc~-~-----~agTdd~IsI~fgDa~Gn~v~~~ 70 (185)
.|.+ .+.|-|.-..+++|. + -.|-+=.|...+-|++|+-++-.
T Consensus 28 Lp~~--aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgkvI~~~ 76 (209)
T KOG1693|consen 28 LPDN--AKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGKVIYSE 76 (209)
T ss_pred cCCc--chhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCCEEeec
Confidence 4444 667777776666661 1 13456678999999998888754
No 26
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=22.38 E-value=46 Score=17.18 Aligned_cols=11 Identities=27% Similarity=0.293 Sum_probs=7.9
Q ss_pred ccccccCCCCC
Q 029912 75 KHVRQVDPLWP 85 (185)
Q Consensus 75 ~~~~~~~~~~~ 85 (185)
||--+++|.||
T Consensus 1 WhWL~~~~GqP 11 (13)
T PF04648_consen 1 WHWLRLSPGQP 11 (13)
T ss_pred CcceeccCCCc
Confidence 55567888877
Done!