Query 029913
Match_columns 185
No_of_seqs 108 out of 1154
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.8E-46 3.9E-51 297.0 22.3 178 1-179 1-187 (212)
2 cd03759 proteasome_beta_type_3 100.0 1E-45 2.2E-50 289.3 22.7 172 6-177 1-172 (195)
3 COG0638 PRE1 20S proteasome, a 100.0 1.3E-44 2.8E-49 290.4 21.8 170 4-175 26-197 (236)
4 cd03760 proteasome_beta_type_4 100.0 2.6E-44 5.6E-49 281.7 22.6 171 7-178 1-176 (197)
5 cd03761 proteasome_beta_type_5 100.0 4.6E-44 9.9E-49 278.5 22.8 166 9-176 1-166 (188)
6 TIGR03634 arc_protsome_B prote 100.0 1E-43 2.2E-48 275.6 23.2 168 8-177 1-168 (185)
7 cd03758 proteasome_beta_type_2 100.0 2.1E-43 4.6E-48 275.8 22.8 166 9-175 2-169 (193)
8 cd03764 proteasome_beta_archea 100.0 8.3E-43 1.8E-47 271.2 23.1 168 9-178 1-168 (188)
9 cd03762 proteasome_beta_type_6 100.0 2.9E-42 6.3E-47 268.1 23.2 169 9-179 1-169 (188)
10 cd03755 proteasome_alpha_type_ 100.0 2.1E-42 4.6E-47 272.8 21.6 168 6-175 25-196 (207)
11 cd03752 proteasome_alpha_type_ 100.0 2.8E-42 6E-47 273.3 21.9 169 6-175 27-199 (213)
12 PTZ00488 Proteasome subunit be 100.0 4.3E-42 9.4E-47 277.3 22.9 171 4-176 35-205 (247)
13 cd01912 proteasome_beta protea 100.0 7.5E-42 1.6E-46 265.6 23.2 168 9-177 1-168 (189)
14 TIGR03690 20S_bact_beta protea 100.0 5.5E-42 1.2E-46 272.6 22.7 169 7-176 1-174 (219)
15 cd03750 proteasome_alpha_type_ 100.0 4.3E-42 9.3E-47 274.6 21.3 168 6-176 25-196 (227)
16 cd03763 proteasome_beta_type_7 100.0 1.2E-41 2.6E-46 265.0 22.8 168 9-179 1-168 (189)
17 cd03751 proteasome_alpha_type_ 100.0 9.8E-42 2.1E-46 269.9 21.2 167 6-175 28-198 (212)
18 cd03754 proteasome_alpha_type_ 100.0 8.5E-42 1.8E-46 270.9 20.7 174 3-178 24-205 (215)
19 cd01911 proteasome_alpha prote 100.0 7.7E-41 1.7E-45 264.2 21.5 171 6-178 25-199 (209)
20 cd01906 proteasome_protease_Hs 100.0 1.2E-40 2.7E-45 256.9 22.0 169 9-178 1-171 (182)
21 cd03749 proteasome_alpha_type_ 100.0 9.9E-41 2.1E-45 264.0 21.6 166 6-176 25-196 (211)
22 PTZ00246 proteasome subunit al 100.0 8.5E-41 1.9E-45 271.0 21.7 169 6-175 29-201 (253)
23 cd03756 proteasome_alpha_arche 100.0 1.2E-40 2.6E-45 263.5 21.8 168 6-176 26-197 (211)
24 PF00227 Proteasome: Proteasom 100.0 1.1E-40 2.5E-45 258.7 20.8 170 6-176 2-177 (190)
25 cd03753 proteasome_alpha_type_ 100.0 1.8E-40 4E-45 262.8 21.7 167 6-175 25-200 (213)
26 TIGR03633 arc_protsome_A prote 100.0 1.9E-40 4.2E-45 264.5 21.3 167 6-175 27-197 (224)
27 PRK03996 proteasome subunit al 100.0 3.5E-40 7.5E-45 265.7 21.6 168 6-176 34-205 (241)
28 cd03765 proteasome_beta_bacter 100.0 1.2E-39 2.7E-44 260.8 21.1 165 9-175 1-183 (236)
29 KOG0176 20S proteasome, regula 100.0 6.9E-40 1.5E-44 248.3 15.4 171 6-179 32-211 (241)
30 KOG0179 20S proteasome, regula 100.0 1.4E-38 3E-43 243.0 16.9 174 1-175 22-206 (235)
31 TIGR03691 20S_bact_alpha prote 100.0 4.6E-38 1E-42 251.1 20.7 162 6-175 25-191 (228)
32 KOG0178 20S proteasome, regula 100.0 2.5E-36 5.4E-41 230.9 15.2 167 6-173 29-200 (249)
33 KOG0177 20S proteasome, regula 100.0 1.1E-35 2.5E-40 223.8 15.7 166 9-175 2-169 (200)
34 KOG0184 20S proteasome, regula 100.0 2.5E-35 5.4E-40 227.0 16.0 163 5-170 31-197 (254)
35 KOG0183 20S proteasome, regula 100.0 2.3E-35 4.9E-40 226.1 12.4 169 5-175 27-201 (249)
36 KOG0181 20S proteasome, regula 100.0 2.9E-35 6.4E-40 222.6 12.3 173 5-180 29-205 (233)
37 KOG0180 20S proteasome, regula 100.0 4E-34 8.6E-39 212.7 17.2 172 1-172 1-172 (204)
38 KOG0173 20S proteasome, regula 100.0 3.2E-34 7E-39 224.3 15.4 172 5-179 34-205 (271)
39 KOG0175 20S proteasome, regula 100.0 2.5E-34 5.3E-39 225.5 14.0 171 6-181 69-239 (285)
40 KOG0174 20S proteasome, regula 100.0 6.5E-34 1.4E-38 215.1 14.0 169 5-175 16-184 (224)
41 PRK05456 ATP-dependent proteas 100.0 3.5E-32 7.7E-37 208.3 19.1 153 8-175 1-158 (172)
42 cd01901 Ntn_hydrolase The Ntn 100.0 5.7E-31 1.2E-35 197.3 21.4 161 9-171 1-163 (164)
43 cd01913 protease_HslV Protease 100.0 2.3E-31 5E-36 202.8 18.9 152 9-174 1-156 (171)
44 KOG0185 20S proteasome, regula 100.0 4.1E-32 9E-37 210.6 13.2 173 6-179 39-217 (256)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.2E-30 2.7E-35 198.7 18.2 152 9-174 1-156 (171)
46 KOG0863 20S proteasome, regula 100.0 4.6E-31 9.9E-36 204.4 15.1 165 6-175 30-200 (264)
47 KOG0182 20S proteasome, regula 100.0 1.3E-29 2.8E-34 194.2 17.1 169 5-175 33-207 (246)
48 COG5405 HslV ATP-dependent pro 99.8 9.8E-20 2.1E-24 134.7 11.0 161 6-181 2-165 (178)
49 COG3484 Predicted proteasome-t 99.4 4.8E-12 1E-16 97.3 10.3 165 8-174 1-183 (255)
50 PF09894 DUF2121: Uncharacteri 95.6 0.81 1.8E-05 35.6 13.8 130 8-173 1-161 (194)
51 KOG3361 Iron binding protein i 92.0 0.23 5E-06 36.3 3.6 43 122-165 72-114 (157)
52 COG4079 Uncharacterized protei 85.5 18 0.00039 29.4 11.1 136 8-174 1-163 (293)
53 PRK14065 exodeoxyribonuclease 53.4 38 0.00083 22.8 4.4 36 141-176 30-65 (86)
54 COG0822 IscU NifU homolog invo 49.3 56 0.0012 24.4 5.4 56 118-174 43-98 (150)
55 PF07499 RuvA_C: RuvA, C-termi 46.9 10 0.00023 22.3 0.9 31 138-168 13-44 (47)
56 PF02609 Exonuc_VII_S: Exonucl 43.0 53 0.0012 19.7 3.7 29 146-174 9-37 (53)
57 COG4537 ComGC Competence prote 42.2 52 0.0011 23.0 3.9 27 61-87 50-77 (107)
58 PRK10465 hydrogenase 2-specifi 39.4 30 0.00066 26.2 2.6 82 101-184 58-145 (159)
59 PF01592 NifU_N: NifU-like N t 31.8 1.2E+02 0.0027 21.5 4.8 53 121-174 42-95 (126)
60 PF08958 DUF1871: Domain of un 30.4 88 0.0019 20.7 3.5 37 142-179 41-77 (79)
61 TIGR02261 benz_CoA_red_D benzo 29.7 59 0.0013 26.7 3.0 53 109-169 104-158 (262)
62 PF03681 UPF0150: Uncharacteri 29.6 65 0.0014 18.6 2.5 17 158-174 30-46 (48)
63 PF12481 DUF3700: Aluminium in 29.6 3E+02 0.0065 22.1 9.7 50 10-65 44-93 (228)
64 PF13983 YsaB: YsaB-like lipop 29.2 1.7E+02 0.0036 19.0 4.6 56 75-130 9-72 (77)
65 PRK11325 scaffold protein; Pro 28.6 1.5E+02 0.0033 21.2 4.8 50 123-173 47-96 (127)
66 COG0771 MurD UDP-N-acetylmuram 28.5 52 0.0011 29.2 2.7 60 105-170 346-411 (448)
67 PF04539 Sigma70_r3: Sigma-70 27.9 1.2E+02 0.0025 19.2 3.8 27 66-92 5-31 (78)
68 PF04485 NblA: Phycobilisome d 27.2 1E+02 0.0022 18.8 3.1 21 155-175 20-40 (53)
69 PF11211 DUF2997: Protein of u 25.2 1.2E+02 0.0026 18.1 3.0 32 121-153 3-34 (48)
70 TIGR02000 NifU_proper Fe-S clu 25.0 2E+02 0.0044 23.9 5.5 53 122-175 44-97 (290)
71 TIGR03192 benz_CoA_bzdQ benzoy 24.5 1.7E+02 0.0036 24.5 4.9 54 107-168 130-185 (293)
72 PF13356 DUF4102: Domain of un 24.4 90 0.002 20.6 2.8 23 155-177 56-78 (89)
73 PF10632 He_PIG_assoc: He_PIG 22.7 1.2E+02 0.0026 16.1 2.4 21 107-128 6-26 (29)
74 cd06664 IscU_like Iron-sulfur 22.2 2.8E+02 0.0061 19.3 5.2 53 119-173 38-91 (123)
75 PRK14067 exodeoxyribonuclease 22.1 2.1E+02 0.0045 19.0 4.1 27 148-174 19-45 (80)
76 KOG0083 GTPase Rab26/Rab37, sm 21.7 1.2E+02 0.0025 22.7 3.0 147 5-176 6-165 (192)
77 TIGR01280 xseB exodeoxyribonuc 21.5 2.3E+02 0.0049 18.0 4.3 28 147-174 12-39 (67)
78 PF01458 UPF0051: Uncharacteri 21.2 2.1E+02 0.0046 22.4 4.8 48 117-170 182-229 (229)
79 COG3140 Uncharacterized protei 21.2 1.8E+02 0.004 17.9 3.3 33 144-176 15-47 (60)
80 COG4302 EutC Ethanolamine ammo 20.6 4.9E+02 0.011 21.5 6.7 113 50-175 163-284 (294)
81 PF07637 PSD5: Protein of unkn 20.6 2.3E+02 0.0049 17.6 4.5 13 170-182 45-57 (64)
82 PRK00977 exodeoxyribonuclease 20.6 2.4E+02 0.0051 18.6 4.1 27 148-174 22-48 (80)
83 PHA03148 hypothetical protein; 20.1 1.7E+02 0.0036 24.4 3.9 57 119-176 197-255 (289)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-46 Score=297.03 Aligned_cols=178 Identities=25% Similarity=0.402 Sum_probs=169.4
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029913 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (185)
.|||.++|+|+|||+++||||||+|++.+.+.++..++.+||++|+++++++++|..+|++.+.+.++.+++.|++.+++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 48999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC------
Q 029913 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK------ 154 (185)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~------ 154 (185)
+++++.+++++++++|++|.+||++++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERET-YSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecC-EEEEeecHHHHHHHHHHHHHhhccCc
Confidence 99999999999999999888899999999999976789999999999999997 99999999999999999975
Q ss_pred ---CCCCHHHHHHHHHHHHHHHhhcccc
Q 029913 155 ---PDMVCNIRFFSLLLDIRMLFHGILC 179 (185)
Q Consensus 155 ---~~~s~eea~~l~~~al~~~~~~~~~ 179 (185)
++||+|||++++.+||+.+.++-..
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~ 187 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIY 187 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 8999999999999999998885543
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-45 Score=289.32 Aligned_cols=172 Identities=59% Similarity=0.993 Sum_probs=162.8
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
.+|+|+|||+++||||||+|++.+.+..+.+++.+||++|++|++++++|..+|++.+.+++|.+++.|++.++++|+++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 36999999999999999999999988777777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHH
Q 029913 86 TFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFS 165 (185)
Q Consensus 86 ~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l 165 (185)
.+|+++++++|++|.+||++++|+||||++++|+||++||+|++.++++++|+|+|+++++++||+.|+++||.|||+++
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 160 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999988899999999999997678999999999998777669999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 029913 166 LLLDIRMLFHGI 177 (185)
Q Consensus 166 ~~~al~~~~~~~ 177 (185)
+++||+.+.++-
T Consensus 161 ~~~~l~~~~~rd 172 (195)
T cd03759 161 ISQALLSAVDRD 172 (195)
T ss_pred HHHHHHHHHhhC
Confidence 999999887753
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=290.43 Aligned_cols=170 Identities=25% Similarity=0.379 Sum_probs=163.7
Q ss_pred ccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCC
Q 029913 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (185)
Q Consensus 4 ~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (185)
....|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+|||+|++||+.+|++.++++++.+++.|++.++++|+
T Consensus 26 ~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~ 105 (236)
T COG0638 26 VKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPIS 105 (236)
T ss_pred HHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34567999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccC--CceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 84 PETFASLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 84 ~~~la~~l~~~~~~~r~--~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
++.+++++++++|.++. |||+|++|+||+|+ ++|+||++||+|++.+++ +.|+|+|+++++++||+.|+++|+.||
T Consensus 106 v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~-~~a~Gsgs~~a~~~Le~~y~~~m~~ee 183 (236)
T COG0638 106 VEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYK-ATAIGSGSQFAYGFLEKEYREDLSLEE 183 (236)
T ss_pred HHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecC-EEEEcCCcHHHHHHHHhhccCCCCHHH
Confidence 99999999999999886 99999999999998 899999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029913 162 RFFSLLLDIRMLFH 175 (185)
Q Consensus 162 a~~l~~~al~~~~~ 175 (185)
|++++.+||+...+
T Consensus 184 ai~la~~al~~a~~ 197 (236)
T COG0638 184 AIELAVKALRAAIE 197 (236)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998876
No 4
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-44 Score=281.71 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=161.4
Q ss_pred cCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHH-HHhhhcCCCCCHH
Q 029913 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHK-LYQLREERDMKPE 85 (185)
Q Consensus 7 ~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~ 85 (185)
.|+|+|||+++||||||+|+|.+.+.++.++..+|||+|+++++++++|+.+|++.+++++|.+++ .+++.++++|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999988899999999999999999999999999999999999999987 5667889999999
Q ss_pred HHHHHHHHHHHhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC--CCCHHH
Q 029913 86 TFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--DMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~ee 161 (185)
.+|+++++++|++| +|||++++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|++ +||.||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~ms~ee 159 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDP-HVATGFGAYLALPLLREAWEKKPDLTEEE 159 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECC-EeEEccHHHHHHHHHHhhcCCCCCCCHHH
Confidence 99999999999876 7999999999999976789999999999999997 999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 029913 162 RFFSLLLDIRMLFHGIL 178 (185)
Q Consensus 162 a~~l~~~al~~~~~~~~ 178 (185)
|++++.+||+.+.++-.
T Consensus 160 a~~l~~~~l~~~~~rd~ 176 (197)
T cd03760 160 ARALIEECMKVLYYRDA 176 (197)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999998877543
No 5
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-44 Score=278.45 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=160.4
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|.+++.|++.++++++++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+|..||++++|+||||+ .||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.|||++++.+
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 158 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGD-LFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARR 158 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcC-eEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999998889999999999996 689999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029913 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.+.++
T Consensus 159 ~l~~~~~r 166 (188)
T cd03761 159 AIYHATHR 166 (188)
T ss_pred HHHHHHHh
Confidence 99988764
No 6
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1e-43 Score=275.55 Aligned_cols=168 Identities=23% Similarity=0.400 Sum_probs=162.1
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029913 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHH
Q 029913 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLL 167 (185)
Q Consensus 88 a~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~ 167 (185)
++++++++|.+++|||++++|+||||+ .+|+||++||+|++.+++ ++++|+|+++++++||+.|+++||++||+++++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~ 158 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDD-YTATGSGSPVAYGVLEDEYREDMSVEEAKKLAV 158 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECC-EEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999999988999999999999997 589999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 029913 168 LDIRMLFHGI 177 (185)
Q Consensus 168 ~al~~~~~~~ 177 (185)
+||+.+....
T Consensus 159 ~~l~~~~~r~ 168 (185)
T TIGR03634 159 RAIKSAIERD 168 (185)
T ss_pred HHHHHHHHhc
Confidence 9999887744
No 7
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-43 Score=275.77 Aligned_cols=166 Identities=21% Similarity=0.322 Sum_probs=158.2
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHH
Q 029913 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSL 166 (185)
Q Consensus 89 ~~l~~~~~~~-r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~ 166 (185)
+++++++|.+ | .|||++++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.|||++++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~ 160 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVP-YAAHGYGAYFCLSILDRYYKPDMTVEEALELM 160 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECC-eeEEeecHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999998653 3 3699999999999976789999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029913 167 LLDIRMLFH 175 (185)
Q Consensus 167 ~~al~~~~~ 175 (185)
.+|++.+..
T Consensus 161 ~~a~~~~~~ 169 (193)
T cd03758 161 KKCIKELKK 169 (193)
T ss_pred HHHHHHHHH
Confidence 999998876
No 8
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.3e-43 Score=271.18 Aligned_cols=168 Identities=24% Similarity=0.419 Sum_probs=161.7
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+++|||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++|+.|||++++.+
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~ 158 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDK-YTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIR 158 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcC-EEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999988999999999999997 789999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 029913 169 DIRMLFHGIL 178 (185)
Q Consensus 169 al~~~~~~~~ 178 (185)
||+.+.....
T Consensus 159 ~l~~~~~rd~ 168 (188)
T cd03764 159 AIKSAIERDS 168 (188)
T ss_pred HHHHHHhhcC
Confidence 9998877543
No 9
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-42 Score=268.11 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=160.8
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 69999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+| +||++++|+||||++.+|+||++||.|++.+++ ++++|+|+++++++||+.|+++||.+||++++++
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~-~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 158 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQP-FAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKN 158 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecC-EEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999876 789999999999975689999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhcccc
Q 029913 169 DIRMLFHGILC 179 (185)
Q Consensus 169 al~~~~~~~~~ 179 (185)
||+.+..+-..
T Consensus 159 al~~~~~rd~~ 169 (188)
T cd03762 159 ALSLAMSRDGS 169 (188)
T ss_pred HHHHHHHhccc
Confidence 99998875543
No 10
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-42 Score=272.81 Aligned_cols=168 Identities=17% Similarity=0.291 Sum_probs=157.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|++.+. .++.++..+||++|++++++++||+.+|++.+.+.++.+++.|++.++++|+++
T Consensus 25 ~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 103 (207)
T cd03755 25 RKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVE 103 (207)
T ss_pred HcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 6899999999999999999998765 466667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~--~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+++++++++ |+++ .|||++++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+.||
T Consensus 104 ~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~ms~ee 182 (207)
T cd03755 104 YITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWK-ANAIGRNSKTVREFLEKNYKEEMTRDD 182 (207)
T ss_pred HHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcce-EEEECCCCHHHHHHHHhhccCCCCHHH
Confidence 9999999999 5554 7899999999999976799999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029913 162 RFFSLLLDIRMLFH 175 (185)
Q Consensus 162 a~~l~~~al~~~~~ 175 (185)
|++++.+||+....
T Consensus 183 ai~l~~~~l~~~~~ 196 (207)
T cd03755 183 TIKLAIKALLEVVQ 196 (207)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987653
No 11
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-42 Score=273.26 Aligned_cols=169 Identities=13% Similarity=0.171 Sum_probs=158.6
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+..+.+++.+||++|+++|++++||..+|++.+.++++.+++.|++.++++|+++
T Consensus 27 ~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~ 106 (213)
T cd03752 27 SHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVE 106 (213)
T ss_pred hcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 68999999999999999999999988777667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c--cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~--~--r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.++++++..++. + +.|||++++|++|||++.+|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||+||
T Consensus 107 ~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~y~~~ms~ee 185 (213)
T cd03752 107 QLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWK-ATAIGNNNQAAQSLLKQDYKDDMTLEE 185 (213)
T ss_pred HHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeee-EEEECCCcHHHHHHHHHhccCCCCHHH
Confidence 999999988643 2 46899999999999976789999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029913 162 RFFSLLLDIRMLFH 175 (185)
Q Consensus 162 a~~l~~~al~~~~~ 175 (185)
|++++.+||+....
T Consensus 186 a~~l~~~al~~~~~ 199 (213)
T cd03752 186 ALALAVKVLSKTMD 199 (213)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987755
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.3e-42 Score=277.31 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=162.1
Q ss_pred ccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCC
Q 029913 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (185)
Q Consensus 4 ~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (185)
+..+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|+.+|++.+.+++|.+++.|++.++++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35679999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHH
Q 029913 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRF 163 (185)
Q Consensus 84 ~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~ 163 (185)
++.+|+++++++|.+|..|+.+++|+||||+ .||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.|||+
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~-~~a~G~gs~~~~~~Le~~~k~dms~eEai 192 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGN-MFSCGSGSTYAYGVLDAGFKWDLNDEEAQ 192 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecC-CEEEccCHHHHHHHHHhcCcCCCCHHHHH
Confidence 9999999999999987667777799999996 579999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029913 164 FSLLLDIRMLFHG 176 (185)
Q Consensus 164 ~l~~~al~~~~~~ 176 (185)
+++++||+.+..+
T Consensus 193 ~l~~kal~~~~~R 205 (247)
T PTZ00488 193 DLGRRAIYHATFR 205 (247)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 13
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.5e-42 Score=265.64 Aligned_cols=168 Identities=28% Similarity=0.467 Sum_probs=161.2
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|+|.+.+..+..+..+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.++.+||++++|+||+|++++|+||.+||+|++.+++ ++++|+++++++++||+.|+++||.+||++++.+
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~ 159 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAP-FVATGSGSKYAYGILDRGYKPDMTLEEAVELVKK 159 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecC-EEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 999999999877899999999999976789999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 029913 169 DIRMLFHGI 177 (185)
Q Consensus 169 al~~~~~~~ 177 (185)
||+.+.+..
T Consensus 160 ~l~~~~~~d 168 (189)
T cd01912 160 AIDSAIERD 168 (189)
T ss_pred HHHHHHHhc
Confidence 999887643
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=5.5e-42 Score=272.62 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=158.9
Q ss_pred cCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q 029913 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (185)
Q Consensus 7 ~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (185)
+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|.+++.|++.++++|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 58999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---cCCceeeeeeEEeecCC-CCcEEEEECCCc-ceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 87 FASLVSALLYEK---RFGPYFCQPVIAGLSDE-DKPFICTMDSIG-AKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 87 la~~l~~~~~~~---r~~P~~vs~llaG~d~~-~~~~Ly~~d~~G-~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
+++++++++|.+ .+|||++++|+||||++ ++|+||++||+| ++..++ ++|+|+|+++++++||+.|+++||.||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~-~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERG-YHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCC-eEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 999999999764 37899999999999964 689999999999 577776 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029913 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++.+||+....+
T Consensus 160 ai~l~~~al~~~~~~ 174 (219)
T TIGR03690 160 ALRVAVEALYDAADD 174 (219)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887763
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-42 Score=274.58 Aligned_cols=168 Identities=15% Similarity=0.235 Sum_probs=158.6
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|..+|++.+.+.++.+++.|++.++++++++
T Consensus 25 ~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~ 103 (227)
T cd03750 25 SSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVS 103 (227)
T ss_pred HcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 689999999999999999999998 5677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~--~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+++.++++++ +++ .|||++++|++|||+ .+|+||++||+|++.+++ ++|+|+|+++++++||++|+++||+||
T Consensus 104 ~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~ee 181 (227)
T cd03750 104 QLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWK-ATAIGKNYSNAKTFLEKRYNEDLELED 181 (227)
T ss_pred HHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeee-EEEECCCCHHHHHHHHhhccCCCCHHH
Confidence 99999999884 444 689999999999996 589999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029913 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+..++.
T Consensus 182 ai~l~~~~l~~~~~~ 196 (227)
T cd03750 182 AIHTAILTLKEGFEG 196 (227)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988765
No 16
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-41 Score=264.95 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=159.3
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|+|.+.+.++..++.+|||+|+++++++++|+.+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++.+|.++ .||++++|+||||+ .+|+||.+||.|++.+++ ++|+|+|+++++++||++|+|+||.+||++++.+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~-~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~ 157 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLP-FVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCE 157 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcC-CCCEEEEECCCCCEEecC-EEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 99999998764 59999999999996 579999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhcccc
Q 029913 169 DIRMLFHGILC 179 (185)
Q Consensus 169 al~~~~~~~~~ 179 (185)
||+.+.++-.+
T Consensus 158 ~l~~~~~rd~~ 168 (189)
T cd03763 158 AIEAGIFNDLG 168 (189)
T ss_pred HHHHHHHhcCc
Confidence 99988775543
No 17
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-42 Score=269.93 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=155.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+. .++..+..+||++|+++++++++|..+|++.+.+++|.+++.|++.++++++++
T Consensus 28 ~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~ 106 (212)
T cd03751 28 ENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVK 106 (212)
T ss_pred hcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 6899999999999999999999976 556667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+++.++++++.+ .+|||++++|++|||+ +||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||+||
T Consensus 107 ~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~-~~a~G~g~~~a~~~Lek~~~~dms~ee 184 (212)
T cd03751 107 VLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYF-GCAIGKGKQAAKTELEKLKFSELTCRE 184 (212)
T ss_pred HHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeE-EEEECCCCHHHHHHHHHhccCCCCHHH
Confidence 9999999987542 2689999999999996 589999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029913 162 RFFSLLLDIRMLFH 175 (185)
Q Consensus 162 a~~l~~~al~~~~~ 175 (185)
|++++.++|.....
T Consensus 185 ai~l~~~~L~~~~~ 198 (212)
T cd03751 185 AVKEAAKIIYIVHD 198 (212)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886655
No 18
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-42 Score=270.86 Aligned_cols=174 Identities=16% Similarity=0.242 Sum_probs=158.6
Q ss_pred cccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCC
Q 029913 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (185)
Q Consensus 3 ~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (185)
++.++|+|+|||+++||||||+|+|.+.+ ++..+..+||++|++++++++||+.+|++.+.+++|.+++.|++.++++|
T Consensus 24 a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 102 (215)
T cd03754 24 AVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEM 102 (215)
T ss_pred HHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 45567999999999999999999998764 44555788999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH--HHhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCC--
Q 029913 83 KPETFASLVSAL--LYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD-- 156 (185)
Q Consensus 83 ~~~~la~~l~~~--~~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~-- 156 (185)
+++.+|++++++ +|+++ .|||++++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++
T Consensus 103 ~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~ 181 (215)
T cd03754 103 PVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYK-ATAAGVKEQEATNFLEKKLKKKPD 181 (215)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEE-EEEECCCcHHHHHHHHHHhccccc
Confidence 999999999997 46554 5799999999999976799999999999999998 9999999999999999999985
Q ss_pred C--CHHHHHHHHHHHHHHHhhccc
Q 029913 157 M--VCNIRFFSLLLDIRMLFHGIL 178 (185)
Q Consensus 157 ~--s~eea~~l~~~al~~~~~~~~ 178 (185)
| +.|||++++++||+....+.+
T Consensus 182 ~~~s~eeai~l~~~al~~~~~rd~ 205 (215)
T cd03754 182 LIESYEETVELAISCLQTVLSTDF 205 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHhcccC
Confidence 7 999999999999998866543
No 19
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=7.7e-41 Score=264.22 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=159.7
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+||++++||||+|+|++.+.+ ++..++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++
T Consensus 25 ~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~ 103 (209)
T cd01911 25 KNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVE 103 (209)
T ss_pred HcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 68999999999999999999999865 55668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~--~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+|++++++++ .++ .|||++++|++|||++++|+||.+||.|++.+++ ++++|+|+++++++||+.|+++|+.+|
T Consensus 104 ~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~ms~~e 182 (209)
T cd01911 104 VLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYK-ATAIGKGSQEAKTFLEKRYKKDLTLEE 182 (209)
T ss_pred HHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeee-EEEeCCCcHHHHHHHHHhcccCCCHHH
Confidence 99999999884 433 6799999999999986799999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 029913 162 RFFSLLLDIRMLFHGIL 178 (185)
Q Consensus 162 a~~l~~~al~~~~~~~~ 178 (185)
|++++.+||+.+...-.
T Consensus 183 a~~l~~~~l~~~~~~d~ 199 (209)
T cd01911 183 AIKLALKALKEVLEEDK 199 (209)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999887653
No 20
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.2e-40 Score=256.87 Aligned_cols=169 Identities=28% Similarity=0.421 Sum_probs=160.8
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+|||+++||||||+|++.+.+.....++.+|||+|+++++++++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC--CceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHH
Q 029913 89 SLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSL 166 (185)
Q Consensus 89 ~~l~~~~~~~r~--~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~ 166 (185)
+++++++|.++. |||++++|++|+|++++|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||.+||++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~ 159 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYK-ATAIGSGSQYALGILEKLYKPDMTLEEAIELA 159 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeecc-EEEECCCcHHHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999875 999999999999976799999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 029913 167 LLDIRMLFHGIL 178 (185)
Q Consensus 167 ~~al~~~~~~~~ 178 (185)
++||+.+.....
T Consensus 160 ~~~l~~~~~~~~ 171 (182)
T cd01906 160 LKALKSALERDL 171 (182)
T ss_pred HHHHHHHHcccC
Confidence 999998877543
No 21
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.9e-41 Score=264.04 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=153.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+ +.+..+||++|++++++++||+.+|++.+.++++.+++.|++.++++|+++
T Consensus 25 ~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~ 101 (211)
T cd03749 25 KQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVS 101 (211)
T ss_pred hcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 57999999999999999999997764 345679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c--cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC--CCCCH
Q 029913 86 TFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK--PDMVC 159 (185)
Q Consensus 86 ~la~~l~~~~~~--~--r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~--~~~s~ 159 (185)
.+++.++..++. + +.|||+|++|++|||+ .||+||++||+|++.+++ ++|+|+|+++++++||++|+ ++|+.
T Consensus 102 ~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~-~~a~G~g~~~a~~~Le~~~~~~~~ms~ 179 (211)
T cd03749 102 RLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYK-ATSIGARSQSARTYLERHFEEFEDCSL 179 (211)
T ss_pred HHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeee-EEEECCCcHHHHHHHHHhhccccCCCH
Confidence 999999998754 2 3789999999999996 589999999999999998 99999999999999999999 59999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 029913 160 NIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 160 eea~~l~~~al~~~~~~ 176 (185)
|||+++++++|+..+..
T Consensus 180 ee~i~~~~~~l~~~~~~ 196 (211)
T cd03749 180 EELIKHALRALRETLPG 196 (211)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999877653
No 22
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=8.5e-41 Score=271.04 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=158.6
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+.++.++..+||++|+++++++++|..+|++.+.+.+|.+++.|++.++++++++
T Consensus 29 ~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~ 108 (253)
T PTZ00246 29 NNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVE 108 (253)
T ss_pred HhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57999999999999999999999998777777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+++.++..++.+ ++|||+|++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|++||
T Consensus 109 ~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~-~~a~G~gs~~~~~~Le~~~~~~ms~ee 187 (253)
T PTZ00246 109 QLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWK-ATAIGQNNQTAQSILKQEWKEDLTLEQ 187 (253)
T ss_pred HHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecce-EEEECCCcHHHHHHHHHhccCCCCHHH
Confidence 9999999986542 37899999999999976789999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029913 162 RFFSLLLDIRMLFH 175 (185)
Q Consensus 162 a~~l~~~al~~~~~ 175 (185)
|++++.+||+.+..
T Consensus 188 ai~l~~~al~~~~~ 201 (253)
T PTZ00246 188 GLLLAAKVLTKSMD 201 (253)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 23
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-40 Score=263.49 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=156.9
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|++.+ +.++..++.+||++|++++++++||+.+|++.+.+.++.+++.|++.++++++++
T Consensus 26 ~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~ 104 (211)
T cd03756 26 KRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVE 104 (211)
T ss_pred HcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 689999999999999999999997 4566778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.++++++.+++.+ +.|||++++|++|||+ ++|+||++||+|++.+++ ++++|+|++.++++||+.|+|+|+.||
T Consensus 105 ~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~m~~~e 182 (211)
T cd03756 105 VLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYK-ATAIGSGRQAVTEFLEKEYKEDMSLEE 182 (211)
T ss_pred HHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeE-EEEECCCCHHHHHHHHhhccCCCCHHH
Confidence 9999999987543 3689999999999997 689999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029913 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+.....
T Consensus 183 a~~l~~~~l~~~~~~ 197 (211)
T cd03756 183 AIELALKALYAALEE 197 (211)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876543
No 24
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.1e-40 Score=258.67 Aligned_cols=170 Identities=26% Similarity=0.434 Sum_probs=156.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCC-cCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~-~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
++|+|+|||+++||||||+|+|.+.+..+.... .+|||+|+++++++++|..+|++.+.++++.+++.|++.+++++++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP 81 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence 689999999999999999999999888875655 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhccCCceeeeeeEEeecCCCCcEEEEECCCcceeee-CcEEEEecChHhHHHHHHhcCCCCCCH
Q 029913 85 ETFASLVSALL----YEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELA-KDFVVAGTAGESLYGACEAMFKPDMVC 159 (185)
Q Consensus 85 ~~la~~l~~~~----~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~ 159 (185)
+.+++.++..+ +..++||+++++|++|||++++|+||.+||+|++.++ + ++|+|+|+++++++||+.|+++|++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~-~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 82 EYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKR-FAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSS-EEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred hhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccc-cccchhcchhhhHHHHhhccCCCCH
Confidence 96666666554 4445799999999999998777999999999999999 6 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 029913 160 NIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 160 eea~~l~~~al~~~~~~ 176 (185)
+||++++++||+.+...
T Consensus 161 ~ea~~~~~~~l~~~~~~ 177 (190)
T PF00227_consen 161 EEAIELALKALKEAIDR 177 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988763
No 25
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-40 Score=262.79 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=155.7
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+. .++..+..+||++|+++++++++|+.+|++.+.+.++.+++.|++.++++|+++
T Consensus 25 ~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 103 (213)
T cd03753 25 KLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVE 103 (213)
T ss_pred hcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 6899999999999999999999986 456667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c-------CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCC
Q 029913 86 TFASLVSALLYEK--R-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD 156 (185)
Q Consensus 86 ~la~~l~~~~~~~--r-------~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~ 156 (185)
.+++.+++++|.+ + .|||++++|++|||+ +||+||.+||+|++.+++ ++|+|+++++++++||+.|+++
T Consensus 104 ~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~-~~a~G~~~~~~~~~L~~~~~~~ 181 (213)
T cd03753 104 SVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCD-AKAIGSGSEGAQSSLQEKYHKD 181 (213)
T ss_pred HHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeeccc-EEEECCCcHHHHHHHHhhccCC
Confidence 9999999998652 1 489999999999996 689999999999999997 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 029913 157 MVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 157 ~s~eea~~l~~~al~~~~~ 175 (185)
||.|||++++++||+....
T Consensus 182 ls~eeai~l~~~~l~~~~~ 200 (213)
T cd03753 182 MTLEEAEKLALSILKQVME 200 (213)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999997654
No 26
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.9e-40 Score=264.53 Aligned_cols=167 Identities=21% Similarity=0.269 Sum_probs=156.6
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+ +.++..+..+||++|++++++++||..+|++.+.+.++.+++.|++.++++++++
T Consensus 27 ~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 105 (224)
T TIGR03633 27 KRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVE 105 (224)
T ss_pred HcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 689999999999999999999997 4677778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c--cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~--~--r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.++++++.+++. + +.|||++++||+|+|+ ++|+||.+||.|++.+++ ++|+|+|+++++++||+.|+++|+.+|
T Consensus 106 ~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~~~ee 183 (224)
T TIGR03633 106 TLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYK-ATAIGAGRQAVTEFLEKEYREDLSLDE 183 (224)
T ss_pred HHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecce-EEEECCCCHHHHHHHHHhccCCCCHHH
Confidence 999999999854 3 2689999999999996 689999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029913 162 RFFSLLLDIRMLFH 175 (185)
Q Consensus 162 a~~l~~~al~~~~~ 175 (185)
|++++++||+....
T Consensus 184 ai~l~~~al~~~~~ 197 (224)
T TIGR03633 184 AIELALKALYSAVE 197 (224)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 27
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.5e-40 Score=265.71 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=157.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|++.+ +.++..++.+||++|++++++++||..+|++.+.+.++.+++.|++.++++++++
T Consensus 34 ~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 112 (241)
T PRK03996 34 KRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVE 112 (241)
T ss_pred HhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 689999999999999999999998 4566777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029913 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.++++++.+++.+ +.|||++++|+||||+ .+|+||++||+|++.+++ ++|+|+|++.++++||+.|+++|+++|
T Consensus 113 ~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~ee 190 (241)
T PRK03996 113 TLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYK-ATAIGAGRDTVMEFLEKNYKEDLSLEE 190 (241)
T ss_pred HHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecce-EEEECCCcHHHHHHHHHhcccCCCHHH
Confidence 9999999998543 2689999999999997 589999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029913 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+.+...
T Consensus 191 ai~l~~~al~~~~~~ 205 (241)
T PRK03996 191 AIELALKALAKANEG 205 (241)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987553
No 28
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-39 Score=260.83 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=148.6
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEcc----CcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC-CCC
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH----DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER-DMK 83 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-~~~ 83 (185)
|-+|||+++||||||+|+|.+.+.... .+.+||++|+ +||+|+.||+.+|++.+++++|.+++.|++.+++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 468999999999999999988765544 4689999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHh----cc------CCceeeeeeEEeecCCCCcEEEEECCCcceeeeC---cEEEEecChHhHHHHHH
Q 029913 84 PETFASLVSALLYE----KR------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAK---DFVVAGTAGESLYGACE 150 (185)
Q Consensus 84 ~~~la~~l~~~~~~----~r------~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~---~~~aiG~g~~~~~~~Le 150 (185)
++.+|+++++++++ +. .|||+|++|++|||++.||+||++||+|++.+++ +|+|+|+ +++++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999998644 11 4799999999999966789999999999999983 2689995 799999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHhh
Q 029913 151 AMFKPDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 151 ~~~~~~~s~eea~~l~~~al~~~~~ 175 (185)
+.|+++||+|||+++|++||+....
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~ 183 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMR 183 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987755
No 29
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-40 Score=248.27 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=158.9
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
+.|+|.|||+.++|||||++||.+++ +..++...||++|++||+|++||+.+|++.++++.|.+++.|.+.|+++|+++
T Consensus 32 kLGsTaIGv~TkEgVvL~vEKritSp-Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VE 110 (241)
T KOG0176|consen 32 KLGSTAIGVKTKEGVVLAVEKRITSP-LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVE 110 (241)
T ss_pred hcCCceeeeeccceEEEEEeccccCc-ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHH
Confidence 56999999999999999999999974 56678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-------cc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCC
Q 029913 86 TFASLVSALLYE-------KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD 156 (185)
Q Consensus 86 ~la~~l~~~~~~-------~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~ 156 (185)
.+.+.++++.-. .+ -|||||++|+||+|+ .+|+||+.||+|++.+++ +-|||+|++-+.+.|++.|+++
T Consensus 111 s~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~-AKAIGSgsEga~~~L~~e~~~~ 188 (241)
T KOG0176|consen 111 SLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYK-AKAIGSGSEGAESSLQEEYHKD 188 (241)
T ss_pred HHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEec-ceeccccchHHHHHHHHHHhhc
Confidence 999999998621 11 489999999999996 699999999999999998 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcccc
Q 029913 157 MVCNIRFFSLLLDIRMLFHGILC 179 (185)
Q Consensus 157 ~s~eea~~l~~~al~~~~~~~~~ 179 (185)
++++||+.+++..|+.+++..+.
T Consensus 189 ltL~ea~~~~L~iLkqVMeeKl~ 211 (241)
T KOG0176|consen 189 LTLKEAEKIVLKILKQVMEEKLN 211 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999886654
No 30
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=242.99 Aligned_cols=174 Identities=24% Similarity=0.361 Sum_probs=165.7
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029913 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (185)
.|||+++|+|+|||.+.|+.|+|+|+|.+.+..|.++...|||+++|+++++.+|+++|+..|...++.+.+.|+.++++
T Consensus 22 f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k 101 (235)
T KOG0179|consen 22 FSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNK 101 (235)
T ss_pred CCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcC-------
Q 029913 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMF------- 153 (185)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~------- 153 (185)
.|+++.+|++|+.++|.+|++||++..++||+|++|++.+|++||.|++++.. +.|-|+++.+++++|++..
T Consensus 102 ~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~-~~AgGsa~~mI~PfLDnQi~~kn~~~ 180 (235)
T KOG0179|consen 102 KMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVT-CRAGGSAASMIQPFLDNQIGHKNQNL 180 (235)
T ss_pred cccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeee-eecCCcchhhhhhhhhhhccCcCccc
Confidence 99999999999999999999999999999999999999999999999999998 9999999999999999863
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHhh
Q 029913 154 ----KPDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 154 ----~~~~s~eea~~l~~~al~~~~~ 175 (185)
++.+|+|+|++|+..++...-+
T Consensus 181 e~~~~~~Ls~e~ai~lv~d~F~SAaE 206 (235)
T KOG0179|consen 181 ENAERTPLSLERAIRLVKDAFTSAAE 206 (235)
T ss_pred ccCcccccCHHHHHHHHHHHhhhhhh
Confidence 2578999999999999865544
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=4.6e-38 Score=251.14 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=146.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcC-CCCCH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (185)
++|+|+|||+++||||||+|++. ...+||++|+|||+|+++|+.+|++.+++.++.+++.|++.++ .++++
T Consensus 25 ~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v 96 (228)
T TIGR03691 25 ARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTG 96 (228)
T ss_pred HcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Confidence 57999999999999999999962 3578999999999999999999999999999999999999997 68999
Q ss_pred HHHHHHHHHHHHhc---cCCceeeeeeEEeecC-CCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029913 85 ETFASLVSALLYEK---RFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 85 ~~la~~l~~~~~~~---r~~P~~vs~llaG~d~-~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
+.+|+.+++.++.. +.|||+|++|++|||+ +.+|+||++||+|++.+++.++|+|+|++.++++||++|+++||.|
T Consensus 97 ~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~e 176 (228)
T TIGR03691 97 RGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLA 176 (228)
T ss_pred HHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHH
Confidence 99998888766432 4689999999999985 4689999999999998864379999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029913 161 IRFFSLLLDIRMLFH 175 (185)
Q Consensus 161 ea~~l~~~al~~~~~ 175 (185)
||++++.+||+....
T Consensus 177 eai~la~~aL~~~~~ 191 (228)
T TIGR03691 177 DALGLAVQALRAGGN 191 (228)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999997743
No 32
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-36 Score=230.91 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=155.0
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
.+.+|+|||..+|||||+++++++++.+-.+.+.+||++|+|+|+|+++|+++|+..|++.+|..+|+|.+.+++++|++
T Consensus 29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e 108 (249)
T KOG0178|consen 29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE 108 (249)
T ss_pred hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46789999999999999999999988777778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc----CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCC-CHH
Q 029913 86 TFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM-VCN 160 (185)
Q Consensus 86 ~la~~l~~~~~~~r----~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~-s~e 160 (185)
+|.+.++++++.+. .||||||+|.+|||+..|.+||+.||+|++..|+ +.|+|.+++.+++.|+..|+++. +.+
T Consensus 109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWk-a~ciG~N~~Aa~s~Lkqdykdd~~~~~ 187 (249)
T KOG0178|consen 109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWK-ATCIGANSGAAQSMLKQDYKDDENDLE 187 (249)
T ss_pred HHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccc-eeeeccchHHHHHHHHhhhccccccHH
Confidence 99999999984432 6999999999999987889999999999999999 99999999999999999998755 599
Q ss_pred HHHHHHHHHHHHH
Q 029913 161 IRFFSLLLDIRML 173 (185)
Q Consensus 161 ea~~l~~~al~~~ 173 (185)
||..+|++.|...
T Consensus 188 eA~~laikvL~kt 200 (249)
T KOG0178|consen 188 EAKALAIKVLSKT 200 (249)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988877544
No 33
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=223.83 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=159.2
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
-+++||++.|+|++|+|+....+.++++++.+|++++++++.|+++|..+|+.++.+++.+.++.|++++|.++|++.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHH
Q 029913 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSL 166 (185)
Q Consensus 89 ~~l~~~~~~~-r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~ 166 (185)
++++..+.+. | .+||.|++|+||+|++.||.||++|-.|+..+.+ |++.|.++.++.++|+.+|+|+||.|||+.+.
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vp-y~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVP-YAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCC-cccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 9999999663 4 7899999999999998889999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029913 167 LLDIRMLFH 175 (185)
Q Consensus 167 ~~al~~~~~ 175 (185)
.+|+..+..
T Consensus 161 kKCv~El~k 169 (200)
T KOG0177|consen 161 KKCVLELKK 169 (200)
T ss_pred HHHHHHHHH
Confidence 999987754
No 34
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=226.95 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=150.3
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++++|+|||||||||||++||-++++ +...+...|||.|++||+|+++|+.+|.+.+..++|.++..|+.+++.|+|.
T Consensus 31 ven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~ 109 (254)
T KOG0184|consen 31 VENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPG 109 (254)
T ss_pred HhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCch
Confidence 468999999999999999999999875 5556778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029913 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 85 ~~la~~l~~~~~~~r----~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
..+++.+.+..+-+. .||||++.++++||. +||+||.+||+|..+.++ .+|+|.|.|.++..||++--++|+.+
T Consensus 110 ~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~-~aaiGKgrq~aKtElEKL~~~~mt~~ 187 (254)
T KOG0184|consen 110 KHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYK-GAAIGKGRQAAKTELEKLKIDEMTCK 187 (254)
T ss_pred HHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCcccee-eeeccchhHHHHHHHHhcccccccHH
Confidence 999999999885532 699999999999995 799999999999999999 99999999999999999887899999
Q ss_pred HHHHHHHHHH
Q 029913 161 IRFFSLLLDI 170 (185)
Q Consensus 161 ea~~l~~~al 170 (185)
|+++-+.+.|
T Consensus 188 e~VkeaakIi 197 (254)
T KOG0184|consen 188 ELVKEAAKII 197 (254)
T ss_pred HHHHHHHhee
Confidence 9998766643
No 35
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=226.12 Aligned_cols=169 Identities=16% Similarity=0.234 Sum_probs=156.2
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
..+|+|+||++++|.|||+.+++... .+...+...||..+++|++|+++|+.+|++.++++.|-+|+.|+++.+.|+++
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv 105 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV 105 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence 36899999999999999999998764 67777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCC--CC
Q 029913 85 ETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD--MV 158 (185)
Q Consensus 85 ~~la~~l~~~~~--~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~--~s 158 (185)
+.++++++.+.+ +.. .||||++.|++|+|+++.|+||++||+|.+.+|+ +.|+|.+++.+..+||+.|.++ .+
T Consensus 106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewk-a~aiGr~sk~VrEflEK~y~e~~~~~ 184 (249)
T KOG0183|consen 106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWK-ANAIGRSSKTVREFLEKNYKEEAIAT 184 (249)
T ss_pred HHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhh-ccccccccHHHHHHHHHhcccccccc
Confidence 999999999884 432 6899999999999998899999999999999999 9999999999999999999865 68
Q ss_pred HHHHHHHHHHHHHHHhh
Q 029913 159 CNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 159 ~eea~~l~~~al~~~~~ 175 (185)
..++++|++.+|..+..
T Consensus 185 ~~~~ikL~ir~LleVvq 201 (249)
T KOG0183|consen 185 EGETIKLAIRALLEVVQ 201 (249)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 89999999999876654
No 36
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=222.63 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=161.7
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
..+|.|.|||+-.||||||++++... .+.+.+..+|+++|.++|+|..||+.+|.+.+++..|..+++|...+++++++
T Consensus 29 v~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt 107 (233)
T KOG0181|consen 29 VVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT 107 (233)
T ss_pred HhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence 46899999999999999999998765 56777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029913 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 85 ~~la~~l~~~~~~~--r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
.++...+++.++++ . .||||+++++||||+ ++|.||++||+|++..|+ +.|+|.+.-.++.+||++|++++.++
T Consensus 108 ~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wk-atA~Gkn~v~aktFlEkR~~edleld 185 (233)
T KOG0181|consen 108 TQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWK-ATAMGKNYVNAKTFLEKRYNEDLELD 185 (233)
T ss_pred HHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehh-hhhhccCcchHHHHHHHHhccccccc
Confidence 99999999999654 2 799999999999997 699999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccC
Q 029913 161 IRFFSLLLDIRMLFHGILCI 180 (185)
Q Consensus 161 ea~~l~~~al~~~~~~~~~~ 180 (185)
+++..|+..||.-++++...
T Consensus 186 d~ihtailtlkE~fege~~~ 205 (233)
T KOG0181|consen 186 DAIHTAILTLKESFEGEMTA 205 (233)
T ss_pred hHHHHHHHHHHHHhcccccc
Confidence 99999999999999887654
No 37
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-34 Score=212.70 Aligned_cols=172 Identities=63% Similarity=1.043 Sum_probs=165.9
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029913 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (185)
|++++.+|+++||.++|++|.+|+|.|.-......+.+++|||+++|++++|.+|+..|.+.+.++++...+.|+++.++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 78999999999999999999999999998877888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029913 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
+|.++.++.++|.++|++|+.||.+..++||+|++++|+|..+|..|.....+||.+.|.+++..++..|..|+|+|..|
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999998999999999999998877899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 029913 161 IRFFSLLLDIRM 172 (185)
Q Consensus 161 ea~~l~~~al~~ 172 (185)
|.++.+.+||..
T Consensus 161 ~LFetisQa~Ln 172 (204)
T KOG0180|consen 161 ELFETISQALLN 172 (204)
T ss_pred HHHHHHHHHHHh
Confidence 999999999743
No 38
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=224.34 Aligned_cols=172 Identities=16% Similarity=0.222 Sum_probs=159.2
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
-..|||++|+.+|||||+++|+|.|.|..+-..+++||+.|.++|+|+.+|.++|...+.+.+..+.+.|++..+|.+.+
T Consensus 34 tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rV 113 (271)
T KOG0173|consen 34 TKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRV 113 (271)
T ss_pred cccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCce
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHH
Q 029913 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFF 164 (185)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~ 164 (185)
-..-+++.++++.+. .-.++.+|++|+|+ .|||||.+.|.|+....+ |.++|||+..++++||..|+|+|++|||.+
T Consensus 114 v~A~~mlkQ~LFrYq-G~IgA~LiiGGvD~-TGpHLy~i~phGStd~~P-f~alGSGslaAmsvlEsr~k~dlt~eea~~ 190 (271)
T KOG0173|consen 114 VTALRMLKQHLFRYQ-GHIGAALILGGVDP-TGPHLYSIHPHGSTDKLP-FTALGSGSLAAMSVLESRWKPDLTKEEAIK 190 (271)
T ss_pred eeHHHHHHHHHHHhc-CcccceeEEccccC-CCCceEEEcCCCCcCccc-eeeeccchHHHHHHHHHhcCcccCHHHHHH
Confidence 999999999997764 23789999999998 589999999999999987 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029913 165 SLLLDIRMLFHGILC 179 (185)
Q Consensus 165 l~~~al~~~~~~~~~ 179 (185)
|+.+|+..-..+-+|
T Consensus 191 Lv~eAi~AGi~nDLg 205 (271)
T KOG0173|consen 191 LVCEAIAAGIFNDLG 205 (271)
T ss_pred HHHHHHHhhhccccC
Confidence 999998755444433
No 39
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=225.53 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=160.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
.+|||.+|+|+++||++|+|+|++.|.+|-++..+||..|+++++-+++|-+||++.+.+.+..+|+.|++++++.|++.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHH
Q 029913 86 TFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFS 165 (185)
Q Consensus 86 ~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l 165 (185)
..++++++++|++|.-.+-+..+++|||+ .||.||++|..|...+-+ -+++|||+.+++++|+..|+++|+.|||.+|
T Consensus 149 aASKllsN~~y~YkGmGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~-~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L 226 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGMGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGD-LFSVGSGSTYAYGVLDSGYRYDLSDEEAYDL 226 (285)
T ss_pred HHHHHHHHHHhhccCcchhheeeEeeccC-CCCceEEEcCCCCEecCc-eEeecCCCceeEEeeccCCCCCCCHHHHHHH
Confidence 99999999999998556778999999997 699999999999998886 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCC
Q 029913 166 LLLDIRMLFHGILCIP 181 (185)
Q Consensus 166 ~~~al~~~~~~~~~~~ 181 (185)
++.|+ +|+...+.
T Consensus 227 ~rrAI---~hAThRDa 239 (285)
T KOG0175|consen 227 ARRAI---YHATHRDA 239 (285)
T ss_pred HHHHH---HHHHhccc
Confidence 88885 45544443
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-34 Score=215.15 Aligned_cols=169 Identities=18% Similarity=0.303 Sum_probs=158.2
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
...|||++|++++|||||++|+|.+.|.++.++..+|+-+|.|+|+||-||+++|.|.+.+.++.....|...+++++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHH
Q 029913 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFF 164 (185)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~ 164 (185)
...|+.++++.|++|- -+-+.+|+||||++.|.++|.+---|+..+-+ ++.-|||+.+++++++..|+|+|++||+++
T Consensus 96 ~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~-~aIgGSGStfIYGf~D~~~r~nMt~EE~~~ 173 (224)
T KOG0174|consen 96 HTAASLFREICYNYRE-MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQP-FAIGGSGSTFIYGFCDANWRPNMTLEECVR 173 (224)
T ss_pred HHHHHHHHHHHHhCHH-hhhcceEEeecccccCceEEEeecCceEeecc-eeeccCCceeeeeeehhhcCCCCCHHHHHH
Confidence 9999999999999872 36689999999998899999998888887765 888889999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 029913 165 SLLLDIRMLFH 175 (185)
Q Consensus 165 l~~~al~~~~~ 175 (185)
++.+|+....+
T Consensus 174 fvk~Av~lAi~ 184 (224)
T KOG0174|consen 174 FVKNAVSLAIE 184 (224)
T ss_pred HHHHHHHHHHh
Confidence 99999875544
No 41
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=3.5e-32 Score=208.28 Aligned_cols=153 Identities=14% Similarity=0.231 Sum_probs=133.8
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEc-cCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q 029913 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (185)
|||+|||+++||||||+|+|++.|.++.+++.+||++| +++++|+.||..+|++.+.+.++.+++.|+.. + .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~----~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN----L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc----c-HHH
Confidence 79999999999999999999999999999999999999 99999999999999999999999999998832 2 466
Q ss_pred HHHHHHHHHHhccC-CceeeeeeEEeecCCCCcEEEEECCCcceeee--CcEEEEecChHhHHHHHHhcCC-CCCCHHHH
Q 029913 87 FASLVSALLYEKRF-GPYFCQPVIAGLSDEDKPFICTMDSIGAKELA--KDFVVAGTAGESLYGACEAMFK-PDMVCNIR 162 (185)
Q Consensus 87 la~~l~~~~~~~r~-~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~--~~~~aiG~g~~~~~~~Le~~~~-~~~s~eea 162 (185)
+++.++.+. ..++ +|+.+++|++ |+ |+||++|+.|+..+. + ++++|||+.+++++||+.|+ |+| ||
T Consensus 76 ~a~l~~~l~-~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~-~~a~GSGs~~a~g~ld~~y~~~~m---eA 145 (172)
T PRK05456 76 AVELAKDWR-TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDG-IIAIGSGGNYALAAARALLENTDL---SA 145 (172)
T ss_pred HHHHHHHHH-hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCC-eEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence 666665442 2333 5788999984 43 699999999999665 5 99999999999999999999 999 99
Q ss_pred HHHHHHHHHHHhh
Q 029913 163 FFSLLLDIRMLFH 175 (185)
Q Consensus 163 ~~l~~~al~~~~~ 175 (185)
++++++|++....
T Consensus 146 ~~la~kai~~A~~ 158 (172)
T PRK05456 146 EEIAEKALKIAAD 158 (172)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886644
No 42
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=100.00 E-value=5.7e-31 Score=197.26 Aligned_cols=161 Identities=27% Similarity=0.347 Sum_probs=153.4
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
+|+||++++||||+|+|++.+.+......+.+||++++++++++++|..+|++.+.++++.+++.|++.+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988777678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CCceeeeeeEEeecCCCCcEEEEECCCcceeee-CcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHH
Q 029913 89 SLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELA-KDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSL 166 (185)
Q Consensus 89 ~~l~~~~~~~r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~ 166 (185)
+.+++.++.++ .+|+++++|++|+|+ ++|+||.+||.|++.+. . ++++|++++++.++|++.|+++++.+|+++++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~-~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPG-AVATGSRSQRAKSLLEKLYKPDMTLEEAVELA 158 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCc-EEEECCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999998876 589999999999997 78999999999999998 6 99999999999999999999999999999999
Q ss_pred HHHHH
Q 029913 167 LLDIR 171 (185)
Q Consensus 167 ~~al~ 171 (185)
.++|+
T Consensus 159 ~~~l~ 163 (164)
T cd01901 159 LKALK 163 (164)
T ss_pred HHHHh
Confidence 99885
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=2.3e-31 Score=202.75 Aligned_cols=152 Identities=13% Similarity=0.203 Sum_probs=129.7
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccC-cEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
||+|||+++||||||+|+|++.|.++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999998 999999999999999999999999999988664 44
Q ss_pred HHHHHHHHHhccCCcee-eeeeEEeecCCCCcEEEEECCCcceeeeC-cEEEEecChHhHHHHHHhcCCCC-CCHHHHHH
Q 029913 88 ASLVSALLYEKRFGPYF-CQPVIAGLSDEDKPFICTMDSIGAKELAK-DFVVAGTAGESLYGACEAMFKPD-MVCNIRFF 164 (185)
Q Consensus 88 a~~l~~~~~~~r~~P~~-vs~llaG~d~~~~~~Ly~~d~~G~~~~~~-~~~aiG~g~~~~~~~Le~~~~~~-~s~eea~~ 164 (185)
++.+..+ ..++.+|+. +.++++++ ++||.+||.|...+.+ ++.++|||+.+++++||..|+++ || +.+
T Consensus 76 a~l~~~l-~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~ 146 (171)
T cd01913 76 VELAKDW-RTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEE 146 (171)
T ss_pred HHHHHHH-HhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHH
Confidence 5554443 223555665 66665533 3999999999998873 49999999999999999999995 99 559
Q ss_pred HHHHHHHHHh
Q 029913 165 SLLLDIRMLF 174 (185)
Q Consensus 165 l~~~al~~~~ 174 (185)
+|.+|++...
T Consensus 147 la~~Av~~A~ 156 (171)
T cd01913 147 IARKALKIAA 156 (171)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 44
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.1e-32 Score=210.61 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=161.6
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHH-hhhcCCCCCH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLY-QLREERDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~-~~~~~~~~~~ 84 (185)
.+||++||+|++||||+|+|+..+.|++....+.+||++++|++++|+||..+|.|.+.+.+......- .++.++.+.+
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P 118 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP 118 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence 579999999999999999999999999999999999999999999999999999999999998877643 3566799999
Q ss_pred HHHHHHHHHHHHhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC---CCCCH
Q 029913 85 ETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK---PDMVC 159 (185)
Q Consensus 85 ~~la~~l~~~~~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~---~~~s~ 159 (185)
+.+..++..++|.+| +.|++.++++||+|.++.|.|-.+|-.|...+.+ ..|.|.|++.++++|++.|+ ++++.
T Consensus 119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~-~vATGfg~hLa~P~lR~~~~~k~~~~s~ 197 (256)
T KOG0185|consen 119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESP-VVATGFGAHLALPLLRDEWEKKGEDLSR 197 (256)
T ss_pred HHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCc-hhhhhhHHHhhhHHHHHhhhccchhhHH
Confidence 999999999999987 8899999999999988899999999999999986 99999999999999999997 68999
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 029913 160 NIRFFSLLLDIRMLFHGILC 179 (185)
Q Consensus 160 eea~~l~~~al~~~~~~~~~ 179 (185)
+||..++.+||++|+|+-..
T Consensus 198 eeA~~li~~cMrVL~YRD~r 217 (256)
T KOG0185|consen 198 EEAEALIEKCMRVLYYRDAR 217 (256)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 99999999999999997543
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.2e-30 Score=198.75 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=129.0
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEc-cCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029913 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
||+|||+++||||||+|+|++.|.++.+++.+||++| +++++|+++|..+|++.+.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999988743 4666
Q ss_pred HHHHHHHHHhccCCcee-eeeeEEeecCCCCcEEEEECCCcceeeeC-cEEEEecChHhHHHHHHhcCC-CCCCHHHHHH
Q 029913 88 ASLVSALLYEKRFGPYF-CQPVIAGLSDEDKPFICTMDSIGAKELAK-DFVVAGTAGESLYGACEAMFK-PDMVCNIRFF 164 (185)
Q Consensus 88 a~~l~~~~~~~r~~P~~-vs~llaG~d~~~~~~Ly~~d~~G~~~~~~-~~~aiG~g~~~~~~~Le~~~~-~~~s~eea~~ 164 (185)
++.++++ ..++++|+. +.++++++ ++||.+||.|...+.+ ++.++|||+.+++++||..|+ ++|+ |++
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~ 146 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEE 146 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHH
Confidence 7777763 223334443 66666533 3999999999999862 499999999999999999994 7777 999
Q ss_pred HHHHHHHHHh
Q 029913 165 SLLLDIRMLF 174 (185)
Q Consensus 165 l~~~al~~~~ 174 (185)
+|.+|++...
T Consensus 147 la~~Av~~A~ 156 (171)
T TIGR03692 147 IAREALKIAA 156 (171)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 46
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-31 Score=204.38 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=151.0
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
+.|++.||+|.++..||++-+|..+ -+++.++||++||+|++++++|+++|++.+.+++|.+|..+++.+++++++.
T Consensus 30 kqGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~ 106 (264)
T KOG0863|consen 30 KQGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVL 106 (264)
T ss_pred hcccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHH
Confidence 6799999999999999999988754 2467789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC--CCCCH
Q 029913 86 TFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK--PDMVC 159 (185)
Q Consensus 86 ~la~~l~~~~~~~--r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~--~~~s~ 159 (185)
-|...+.+..+.+ | .|||||.++++|||+ .||+||+++|+|.+.+++ ..+||+.+|.+..+||+... ++++.
T Consensus 107 rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~-g~sIGsRSQsARTyLEr~~e~f~~~~~ 184 (264)
T KOG0863|consen 107 RLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECK-GMSIGSRSQSARTYLERNLEEFEDSSP 184 (264)
T ss_pred HHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEe-eeecccchhhHHHHHHHHHHHHhcCCH
Confidence 9999888877553 3 689999999999997 699999999999999999 99999999999999999876 58999
Q ss_pred HHHHHHHHHHHHHHhh
Q 029913 160 NIRFFSLLLDIRMLFH 175 (185)
Q Consensus 160 eea~~l~~~al~~~~~ 175 (185)
||.++.++.||+-...
T Consensus 185 eELI~~gi~Alr~tlp 200 (264)
T KOG0863|consen 185 EELIKHGIMALRETLP 200 (264)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999986543
No 47
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=194.22 Aligned_cols=169 Identities=15% Similarity=0.235 Sum_probs=156.7
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.+.|-|.||+|+||.+|+++.+++.. +++.++....+|+|.++|+|+++|..+|++..++++|.++..+++.+|.+||+
T Consensus 33 n~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~ 111 (246)
T KOG0182|consen 33 NQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPC 111 (246)
T ss_pred hcCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 34589999999999999999999986 57788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCC--CC
Q 029913 85 ETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD--MV 158 (185)
Q Consensus 85 ~~la~~l~~~~--~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~--~s 158 (185)
+.||+.++++- |.++ +||+|+.+++.|+|++.||.||.+||.|.+..++ +.+.|-....+..+||+.|+++ .+
T Consensus 112 DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~k-AtaaG~Kq~e~tsfLEKk~Kk~~~~t 190 (246)
T KOG0182|consen 112 DILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFK-ATAAGVKQQEATSFLEKKYKKDIDLT 190 (246)
T ss_pred HHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccce-eeecccchhhHHHHHHHhhccCccch
Confidence 99999999976 4544 8999999999999998899999999999999999 9999999999999999999987 67
Q ss_pred HHHHHHHHHHHHHHHhh
Q 029913 159 CNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 159 ~eea~~l~~~al~~~~~ 175 (185)
.+|++++++.||...+.
T Consensus 191 ~~e~ve~ai~al~~sl~ 207 (246)
T KOG0182|consen 191 FEETVETAISALQSSLG 207 (246)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999876544
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.8e-20 Score=134.71 Aligned_cols=161 Identities=17% Similarity=0.271 Sum_probs=132.4
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccC-cEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029913 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
-++||++++|.++.|++|+|.++|.|..+++.+.+|+.+|.+ +++.+++|.++|+..|.+.++.+++.|.-+.-+ ..
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 478999999999999999999999999999999999999964 799999999999999999999999988633222 45
Q ss_pred HHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeee-CcEEEEecChHhHHHHHHhcCC-CCCCHHHH
Q 029913 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELA-KDFVVAGTAGESLYGACEAMFK-PDMVCNIR 162 (185)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~-~~~~aiG~g~~~~~~~Le~~~~-~~~s~eea 162 (185)
.++++.|++-.|.+| +.+.++++ |+ -.+|-+...|...+. .+..|||||..++++.....++ +++| |
T Consensus 80 velaKdwr~Dk~lr~---LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A 148 (178)
T COG5405 80 VELAKDWRTDKYLRK---LEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---A 148 (178)
T ss_pred HHHHHhhhhhhHHHH---HhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---H
Confidence 677777777666655 55777877 44 467888999987654 3599999999999999988876 4777 6
Q ss_pred HHHHHHHHHHHhhccccCC
Q 029913 163 FFSLLLDIRMLFHGILCIP 181 (185)
Q Consensus 163 ~~l~~~al~~~~~~~~~~~ 181 (185)
.++++++|++. +.+|+-
T Consensus 149 ~eIa~~sl~iA--~eiciy 165 (178)
T COG5405 149 REIAEKSLKIA--GDICIY 165 (178)
T ss_pred HHHHHHHHhhh--heEEEe
Confidence 66777888754 888874
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.8e-12 Score=97.33 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=126.8
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEc---cCc-EEEEEecChhHHHHHHHHHHHHHHHHhh-hcCCCC
Q 029913 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI---HDR-LFIGLSGLATDSQTLYQRLVFRHKLYQL-REERDM 82 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i---~~~-i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~~ 82 (185)
+|-|||++.+.|.|+++|+|.+.|....+ ..+|+|.. +++ +++..+|..+-.|.+++.+.+..+.-.- ....-.
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~is-tfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYIS-TFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHHH-HHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 47899999999999999999988765543 47788776 466 5677899999999999999877652111 112334
Q ss_pred CHHHHHHHHHHHHHh---c-c------CCceeeeeeEEeecCCCCcEEEEECCCcceeee---CcEEEEecChHhHHHHH
Q 029913 83 KPETFASLVSALLYE---K-R------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELA---KDFVVAGTAGESLYGAC 149 (185)
Q Consensus 83 ~~~~la~~l~~~~~~---~-r------~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~---~~~~aiG~g~~~~~~~L 149 (185)
++.+.+.++.....+ + + .--|.|++|++|.-..+-|+||.+.|-|++.+. .+|..|| -.++-+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiG-EtKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIG-ETKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcc-ccccCchhh
Confidence 666777666665422 1 1 236899999999986556899999999998763 2599999 567889999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 150 EAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 150 e~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
++.+.-++++||+.++++-++...+
T Consensus 159 dR~i~~~~pLeea~kcaLvS~DSTl 183 (255)
T COG3484 159 DRTITYDTPLEEAAKCALVSFDSTL 183 (255)
T ss_pred hhhhhccCCHHHHhhheEEecchhh
Confidence 9999999999999999887766543
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=95.59 E-value=0.81 Score=35.59 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=74.7
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029913 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
++-+||..+++|.|+|+|+|. ++|-|.-.....|.+. +-.|+=-+-+.|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee---------LYsG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE---------LYSGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH---------HhCCccCCHHHH
Confidence 467999999999999999973 2344554444444332 223443355666
Q ss_pred HHHHHHHH---H--hcc--CCceeeeeeEE------eecCCCCcEEEEE-------CCCcceeeeCcEEEEecCh-----
Q 029913 88 ASLVSALL---Y--EKR--FGPYFCQPVIA------GLSDEDKPFICTM-------DSIGAKELAKDFVVAGTAG----- 142 (185)
Q Consensus 88 a~~l~~~~---~--~~r--~~P~~vs~lla------G~d~~~~~~Ly~~-------d~~G~~~~~~~~~aiG~g~----- 142 (185)
.+....+= + ..| .+-.+- +|++ |.+. .+-++|.. |-.|+-.. -...|.++
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~---~~~~g~~sgiIVf 124 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEIT---NKSRGEGSGIIVF 124 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEE---EEecCCceeEEEE
Confidence 66655531 1 111 111221 2322 3332 23456643 22232221 12333333
Q ss_pred ------HhHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 029913 143 ------ESLYGACEAMFKPDMVCNIRFFSLLLDIRML 173 (185)
Q Consensus 143 ------~~~~~~Le~~~~~~~s~eea~~l~~~al~~~ 173 (185)
+.+...|.++|++.|+++++.++..++|+-+
T Consensus 125 GNk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~ 161 (194)
T PF09894_consen 125 GNKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEV 161 (194)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 6777788999999999999999999998866
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=91.98 E-value=0.23 Score=36.27 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=39.8
Q ss_pred EECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHH
Q 029913 122 TMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFS 165 (185)
Q Consensus 122 ~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l 165 (185)
.+|.+|.+...+ |-.+|.|+..+.+-+-..|-+++++|||.++
T Consensus 72 kvd~~g~I~dak-FKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVIEDAK-FKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EECCCCcEEEee-eeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 478899999998 9999999999999999999999999999875
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.53 E-value=18 Score=29.40 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=75.0
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029913 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
++-+|+..+++|.|+|+|+|. +++-|.-.|.+.+.+. +-.|.=.+-+.|
T Consensus 1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHH
Confidence 467899999999999999963 2334555565555543 224554577778
Q ss_pred HHHHHHHH-----Hhcc--CCceeeeeeEEeecCC-----CCcEEEEECCC-------cceeee------CcEEEEecC-
Q 029913 88 ASLVSALL-----YEKR--FGPYFCQPVIAGLSDE-----DKPFICTMDSI-------GAKELA------KDFVVAGTA- 141 (185)
Q Consensus 88 a~~l~~~~-----~~~r--~~P~~vs~llaG~d~~-----~~~~Ly~~d~~-------G~~~~~------~~~~aiG~g- 141 (185)
+++...+= ...| .+-..-+++++-+... .+-++|..-.. |+-.-. ....+.|..
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 77776642 1111 2222223343333321 12345543221 221100 012233321
Q ss_pred -hHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 142 -GESLYGACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 142 -~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
-+.+..+|.+.|.+.++++++.++...+++-+.
T Consensus 130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vs 163 (293)
T COG4079 130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVS 163 (293)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Confidence 245566888889999999999987777766543
No 53
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=53.35 E-value=38 Score=22.83 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=29.9
Q ss_pred ChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhc
Q 029913 141 AGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 141 g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~~ 176 (185)
+-+.+..+|++.-.|++|+++.+++=.++++.+.+.
T Consensus 30 klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eA 65 (86)
T PRK14065 30 HVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLA 65 (86)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999988888877553
No 54
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=49.33 E-value=56 Score=24.41 Aligned_cols=56 Identities=14% Similarity=-0.132 Sum_probs=42.9
Q ss_pred cEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 118 PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 118 ~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
..||..=..|...... |-..|.+...+.+-+=..+-++.|.+||.++.....+++.
T Consensus 43 i~l~lkv~~~~I~d~~-F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 43 ITLYLKVDNGVIEDAK-FKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEEcCCEEEEEE-eeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4555433388888887 9899988888888777777889999999999866655554
No 55
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=46.95 E-value=10 Score=22.27 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=20.7
Q ss_pred EecChHhHHHHHHhcC-CCCCCHHHHHHHHHH
Q 029913 138 AGTAGESLYGACEAMF-KPDMVCNIRFFSLLL 168 (185)
Q Consensus 138 iG~g~~~~~~~Le~~~-~~~~s~eea~~l~~~ 168 (185)
.|.....+...+.+.. .++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 4666777777777766 788998887776543
No 56
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=43.01 E-value=53 Score=19.72 Aligned_cols=29 Identities=3% Similarity=-0.056 Sum_probs=20.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 146 YGACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 146 ~~~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
..++++.-++++|+++++++-.++++.+-
T Consensus 9 e~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 9 EEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34445555689999999999999987654
No 57
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=42.21 E-value=52 Score=22.99 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhcCC-CCCHHHH
Q 029913 61 QTLYQRLVFRHKLYQLREER-DMKPETF 87 (185)
Q Consensus 61 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l 87 (185)
..++..++.+++.|+++.++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 46778888899999998887 6677666
No 58
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=39.39 E-value=30 Score=26.18 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=50.4
Q ss_pred CceeeeeeEE-eecCC-----CCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 101 GPYFCQPVIA-GLSDE-----DKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 101 ~P~~vs~lla-G~d~~-----~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
-||..++++. |-+.. -|-.+..-=|.|.+...- ..--|.|.+.+-+.+.-. .+-.+.++|+.+|..++++++
T Consensus 58 TPWfmnLV~LPg~~q~w~~~~~G~k~~~~lP~G~~~F~~-~~~~~~G~y~sCSLfSPm-~~f~~~~~A~~~A~a~l~~ll 135 (159)
T PRK10465 58 TPWMLSAVILPGPDQLWPRRKVGEKLGLQLPYGTMTFTV-GELDGVSQYLSCSLMSPL-DPSLSAEQGVRLADDCARMLL 135 (159)
T ss_pred chhhHhheeccCcccccccCCCcceEEEecCCceEEEEe-ecCCCCcceeEeeccCCc-ccccCHHHHHHHHHHHHHHHh
Confidence 4888888754 32211 133444556888776543 333455555555544443 245799999999999999998
Q ss_pred hccccCCCCC
Q 029913 175 HGILCIPESP 184 (185)
Q Consensus 175 ~~~~~~~~~~ 184 (185)
.--.-+|.-|
T Consensus 136 s~pv~~~~~p 145 (159)
T PRK10465 136 SLPVTNPDVP 145 (159)
T ss_pred cCcccCCCCC
Confidence 7655555433
No 59
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=31.81 E-value=1.2e+02 Score=21.52 Aligned_cols=53 Identities=17% Similarity=-0.003 Sum_probs=36.9
Q ss_pred EEECCC-cceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 121 CTMDSI-GAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 121 y~~d~~-G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
..+|.. |.+.... |.+.|...-.+-.-+=..+-.+.+++||.++..+-+...+
T Consensus 42 l~i~~~~~~I~d~~-f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l 95 (126)
T PF01592_consen 42 LKIDDDGGRIKDAK-FQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEAL 95 (126)
T ss_dssp EEESSSTSBEEEEE-EEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHH
T ss_pred EEEecCCCeEEEEE-EEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 347887 7777887 8888877666655554445568899999887665554443
No 60
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=30.42 E-value=88 Score=20.75 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=23.8
Q ss_pred hHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhcccc
Q 029913 142 GESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILC 179 (185)
Q Consensus 142 ~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~~~~~ 179 (185)
++.++.+++..|...++.++.+++|.+.|. +-....|
T Consensus 41 A~~Iq~If~~SF~e~~~~e~C~~iA~klL~-ik~~~sc 77 (79)
T PF08958_consen 41 AKKIQSIFEFSFGEWLPIEECEEIAEKLLA-IKESSSC 77 (79)
T ss_dssp HHHHHHHHHHHHSS---HHHHHHHHHHHHH-HHHHH--
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHh-HhhcCCC
Confidence 456677888888888899999999888775 3344445
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=29.66 E-value=59 Score=26.69 Aligned_cols=53 Identities=15% Similarity=0.000 Sum_probs=35.4
Q ss_pred EEeecCCCCcEEEEECCCcceee--eCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHH
Q 029913 109 IAGLSDEDKPFICTMDSIGAKEL--AKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLD 169 (185)
Q Consensus 109 laG~d~~~~~~Ly~~d~~G~~~~--~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~a 169 (185)
++|.|. .+..+|..|.... .+|.||.|.|+ |+....+. =+++++|.-+++.++
T Consensus 104 IGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~---L~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARY---LGIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCce----EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHH---hCCCHHHHHHHHhcC
Confidence 567664 3677888898754 35788999886 33333332 257888888877666
No 62
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=29.59 E-value=65 Score=18.61 Aligned_cols=17 Identities=0% Similarity=-0.076 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHh
Q 029913 158 VCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 158 s~eea~~l~~~al~~~~ 174 (185)
|.+||++-++.||...+
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 78888888888887654
No 63
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=29.56 E-value=3e+02 Score=22.13 Aligned_cols=50 Identities=18% Similarity=0.031 Sum_probs=33.2
Q ss_pred eEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHH
Q 029913 10 ALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65 (185)
Q Consensus 10 t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~ 65 (185)
..+.+..-+..+||--.-... . -..|.|..-|+|+|.+.|.....-.|.+
T Consensus 44 ~a~s~~~g~~~~lAys~~~~~-~-----l~pR~F~~~DdIfCiF~G~L~Nl~~L~q 93 (228)
T PF12481_consen 44 NAFSMNFGDSAALAYSHSNQS-S-----LHPRLFAGVDDIFCIFLGSLENLCSLRQ 93 (228)
T ss_pred CeEEEEcCCCEEEEEecCCCC-c-----cccccccccCCEEEEEecchhhHHHHHH
Confidence 456677777777775332211 1 2467888888999999999765555544
No 64
>PF13983 YsaB: YsaB-like lipoprotein
Probab=29.16 E-value=1.7e+02 Score=19.04 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=34.9
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHhcc--------CCceeeeeeEEeecCCCCcEEEEECCCccee
Q 029913 75 QLREERDMKPETFASLVSALLYEKR--------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 130 (185)
Q Consensus 75 ~~~~~~~~~~~~la~~l~~~~~~~r--------~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~ 130 (185)
+..-.+.+.++++++.=+...|... +..|.-|-=+-|+-.....++.++||.|.+.
T Consensus 9 kvsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~r~E~FvCSFD~dGqFL 72 (77)
T PF13983_consen 9 KVSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTARKEGFVCSFDADGQFL 72 (77)
T ss_pred ccCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeecccccccceEEeECCCCcEE
Confidence 3444566677777776666666521 2234444444565444567899999999875
No 65
>PRK11325 scaffold protein; Provisional
Probab=28.57 E-value=1.5e+02 Score=21.23 Aligned_cols=50 Identities=16% Similarity=0.033 Sum_probs=37.3
Q ss_pred ECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 029913 123 MDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRML 173 (185)
Q Consensus 123 ~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~ 173 (185)
+|+.|.+.+.. |.+.|.....+-..+=..+-.+.+++||..+..+.+...
T Consensus 47 v~~~~~I~d~~-f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 47 VNDEGIIEDAK-FKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred ECCCCeEEEEE-EEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 55567788887 888887776666666566667889999999887766543
No 66
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.46 E-value=52 Score=29.19 Aligned_cols=60 Identities=10% Similarity=0.003 Sum_probs=43.2
Q ss_pred eeeeEEeecCCCCcEEEEECCCccee---eeCcEEEEecChHhHHHHHHhc---CCCCCCHHHHHHHHHHHH
Q 029913 105 CQPVIAGLSDEDKPFICTMDSIGAKE---LAKDFVVAGTAGESLYGACEAM---FKPDMVCNIRFFSLLLDI 170 (185)
Q Consensus 105 vs~llaG~d~~~~~~Ly~~d~~G~~~---~~~~~~aiG~g~~~~~~~Le~~---~~~~~s~eea~~l~~~al 170 (185)
+-+|++|.|+ ++. +++...+. ... ...+|..+..+...|++. +...-++|+|++.+.+-.
T Consensus 346 v~lI~GG~~K-g~d----f~~L~~~~~~~~~~-~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDK-GAD----FSPLAEILAKVIKK-LVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCC-CCC----hhHHHHHhhhcceE-EEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 7788889886 333 24443332 223 778999999999999887 556679999999887754
No 67
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=27.89 E-value=1.2e+02 Score=19.23 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 029913 66 RLVFRHKLYQLREERDMKPETFASLVS 92 (185)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~la~~l~ 92 (185)
.+++..+.+....|++++.+.+|..+.
T Consensus 5 ~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 5 KIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 344444555667899999999998654
No 68
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=27.15 E-value=1e+02 Score=18.84 Aligned_cols=21 Identities=10% Similarity=-0.094 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 029913 155 PDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~ 175 (185)
.+||.|+|.++.++.++.++-
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmi 40 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMI 40 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHH
Confidence 479999999999999886653
No 69
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=25.21 E-value=1.2e+02 Score=18.06 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=22.5
Q ss_pred EEECCCcceeeeCcEEEEecChHhHHHHHHhcC
Q 029913 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMF 153 (185)
Q Consensus 121 y~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~ 153 (185)
|.++|+|.....- -...|+....+...||+.+
T Consensus 3 ~~I~~dG~V~~~v-~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEV-EGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEE-EeccChhHHHHHHHHHHHh
Confidence 6789999986654 4557777777777776654
No 70
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=25.04 E-value=2e+02 Score=23.86 Aligned_cols=53 Identities=11% Similarity=-0.016 Sum_probs=39.5
Q ss_pred EECC-CcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 029913 122 TMDS-IGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 122 ~~d~-~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 175 (185)
.+|+ .|.+.+.. |.+.|.+...+-.-+=..+-.+.|.+||.++..+.+...+.
T Consensus 44 ~vd~~~~~I~d~~-F~~~GCais~ASAs~~~eli~Gktv~ea~~i~~~di~~~L~ 97 (290)
T TIGR02000 44 KVDPESDKIVDAG-FQTFGCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYLG 97 (290)
T ss_pred EEcCCCCeEEEEE-EEecCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHHHHc
Confidence 4665 67777777 88888887777666666666789999999998877765443
No 71
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.50 E-value=1.7e+02 Score=24.49 Aligned_cols=54 Identities=13% Similarity=-0.077 Sum_probs=33.7
Q ss_pred eeEEeecCCCCcEEEEECCCcceee--eCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029913 107 PVIAGLSDEDKPFICTMDSIGAKEL--AKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 107 ~llaG~d~~~~~~Ly~~d~~G~~~~--~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+=++|.|. .+..+|..|.... .+|.||.|.|+ |.....+. =+++++|.-+++.+
T Consensus 130 IDIGGQDs----K~I~~d~~G~v~dF~MNdkCAAGTGr-FLE~~A~~---Lgi~leel~~~a~~ 185 (293)
T TIGR03192 130 LDMGGQDC----KAIHCDEKGKVTNFLMNDKCAAGTGR-GMEVISDL---MQIPIADLGPRSFD 185 (293)
T ss_pred EEeCCCce----EEEEEcCCCcEeeeeecCcccccccH-HHHHHHHH---cCCCHHHHHHHHHh
Confidence 33577764 4666799998644 35789999986 33222222 25677877666544
No 72
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=24.40 E-value=90 Score=20.60 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcc
Q 029913 155 PDMVCNIRFFSLLLDIRMLFHGI 177 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~~~ 177 (185)
|.||++||-+.|.+....+-.|+
T Consensus 56 p~~sl~~AR~~a~~~~~~~~~G~ 78 (89)
T PF13356_consen 56 PELSLAEAREKARELRALVRQGI 78 (89)
T ss_dssp TTS-HHHHHHHHHHHHHHHCTT-
T ss_pred ccCCHHHHHHHHHHHHHHHHcCC
Confidence 78999999999999888776554
No 73
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=22.67 E-value=1.2e+02 Score=16.12 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=15.7
Q ss_pred eeEEeecCCCCcEEEEECCCcc
Q 029913 107 PVIAGLSDEDKPFICTMDSIGA 128 (185)
Q Consensus 107 ~llaG~d~~~~~~Ly~~d~~G~ 128 (185)
..+-|.-+ +.|+||.+-.+|.
T Consensus 6 ~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 6 PRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred CcEEcccC-CCcEEEEeeccCc
Confidence 34557666 7899999988874
No 74
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=22.19 E-value=2.8e+02 Score=19.31 Aligned_cols=53 Identities=21% Similarity=0.074 Sum_probs=36.8
Q ss_pred EEEE-ECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 029913 119 FICT-MDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRML 173 (185)
Q Consensus 119 ~Ly~-~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~ 173 (185)
.||. ++. |...... |.+.|.+.-.+-..+=..+-.+.+.+|+.++...-+..+
T Consensus 38 ~l~l~i~~-~~I~d~~-f~~~GC~i~~Asas~~~~~~~Gk~~~ea~~i~~~~~~~~ 91 (123)
T cd06664 38 TLYLKVED-GRITDAK-FQGFGCAISIASASLLTELIKGKTLDEALKLLNKDIAML 91 (123)
T ss_pred EEEEEEcC-CEEEEEE-EEecCcHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 4443 444 6777776 888887765555555455556889999999998877665
No 75
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.05 E-value=2.1e+02 Score=18.98 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=19.9
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 148 ACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 148 ~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
++++.-.+++++++++++-.++++++-
T Consensus 19 IV~~LE~~~l~Lees~~lyeeG~~L~k 45 (80)
T PRK14067 19 IVDALEGGDLPLEESVALYKEGLGLAR 45 (80)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 344444589999999998888877553
No 76
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=21.74 E-value=1.2e+02 Score=22.68 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=72.3
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcE----EEEEecChhHHHHHHHHHHHH-------HHH
Q 029913 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRL----FIGLSGLATDSQTLYQRLVFR-------HKL 73 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i----~~~~sG~~aD~~~l~~~~~~~-------~~~ 73 (185)
+..|.||+=|++|||..|+..=-.+-|. +.-+|+..+++.- ++-.+|- +++...-... ...
T Consensus 6 s~~gktcllir~kdgafl~~~fistvgi----d~rnkli~~~~~kvklqiwdtagq----erfrsvt~ayyrda~allll 77 (192)
T KOG0083|consen 6 SCTGKTCLLIRFKDGAFLAGNFISTVGI----DFRNKLIDMDDKKVKLQIWDTAGQ----ERFRSVTHAYYRDADALLLL 77 (192)
T ss_pred CccCceEEEEEeccCceecCceeeeeee----ccccceeccCCcEEEEEEeeccch----HHHhhhhHhhhcccceeeee
Confidence 3578999999999999988643222222 3345777776542 3334443 1222111110 011
Q ss_pred HhhhcCCCCCHHHHHHHHHHHH-HhccCCceeeeeeEEeecCCCCc-EEEEECCCcceeeeCcEEEEecChHhHHHHHHh
Q 029913 74 YQLREERDMKPETFASLVSALL-YEKRFGPYFCQPVIAGLSDEDKP-FICTMDSIGAKELAKDFVVAGTAGESLYGACEA 151 (185)
Q Consensus 74 ~~~~~~~~~~~~~la~~l~~~~-~~~r~~P~~vs~llaG~d~~~~~-~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~ 151 (185)
|.. -..-+.+.+-..++++. |.+ -.|.+++.|-.-+-.| +... ...|.- -...+-.+++|.
T Consensus 78 ydi--ankasfdn~~~wlsei~ey~k----~~v~l~llgnk~d~a~er~v~-~ddg~k----------la~~y~ipfmet 140 (192)
T KOG0083|consen 78 YDI--ANKASFDNCQAWLSEIHEYAK----EAVALMLLGNKCDLAHERAVK-RDDGEK----------LAEAYGIPFMET 140 (192)
T ss_pred eec--ccchhHHHHHHHHHHHHHHHH----hhHhHhhhccccccchhhccc-cchHHH----------HHHHHCCCceec
Confidence 111 12235666666666654 333 2355565553211111 1110 001100 011233456777
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhc
Q 029913 152 MFKPDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 152 ~~~~~~s~eea~~l~~~al~~~~~~ 176 (185)
.-+.+++.+-|+-.+.+-|+-+.++
T Consensus 141 saktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred cccccccHhHHHHHHHHHHHHhccC
Confidence 7777888888877666666655443
No 77
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.52 E-value=2.3e+02 Score=17.99 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=20.5
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 147 GACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 147 ~~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
.++++.-.+++++++++++-.++++.+-
T Consensus 12 ~Iv~~LE~~~l~Leesl~lyeeG~~L~k 39 (67)
T TIGR01280 12 QIVQKLESGDLALEEALNLFERGMALAR 39 (67)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3444445689999999998888876553
No 78
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=21.20 E-value=2.1e+02 Score=22.45 Aligned_cols=48 Identities=8% Similarity=-0.061 Sum_probs=31.6
Q ss_pred CcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 029913 117 KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDI 170 (185)
Q Consensus 117 ~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al 170 (185)
.|.|- ++..-. .-.. .+++|.=.+..+-+|.. .+++.+||.+|+.+++
T Consensus 182 ~P~Le-I~~~dV-~a~H-~AtvG~idee~LFYL~S---RGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 182 IPELE-IDEDDV-KASH-GATVGQIDEEQLFYLMS---RGLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEE-E-SSSE-EEEE-EEEEEES-HHHHHHHHC---TT--HHHHHHHHHHHH
T ss_pred EEhHh-cccCCc-EEEE-eeEeecCCHHHHHHHHH---cCCCHHHHHHHHHhhC
Confidence 46665 333332 1124 77899988888888888 5999999999998864
No 79
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=1.8e+02 Score=17.93 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=24.5
Q ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhc
Q 029913 144 SLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 144 ~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~~ 176 (185)
.+..-+.+...++||.-||+.++.+.||.-.-+
T Consensus 15 ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~ 47 (60)
T COG3140 15 KAVERIQELMAEGMSSGEAIALVAQELRENHKG 47 (60)
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHHhcc
Confidence 344445555668999999999999999876443
No 80
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=20.63 E-value=4.9e+02 Score=21.46 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=67.8
Q ss_pred EEEEecChhHH-----HHHHHHHHHHHHHHhhhcCCCCCHHH----HHHHHHHHHHhccCCceeeeeeEEeecCCCCcEE
Q 029913 50 FIGLSGLATDS-----QTLYQRLVFRHKLYQLREERDMKPET----FASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120 (185)
Q Consensus 50 ~~~~sG~~aD~-----~~l~~~~~~~~~~~~~~~~~~~~~~~----la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~L 120 (185)
++..-|+.+++ .-+...+....+.+.++.+.++-++. ++..++..+..+ +.+|+.| .+|-|
T Consensus 163 ivVaDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~fVk~gRVa~aD~IgE~LgAk------vviiLIG----ERPGL 232 (294)
T COG4302 163 IVVADGLSALAITANYEPILPPLMEGLKAAGLSVGTPFFVKYGRVAVADQIGEILGAK------VVIILIG----ERPGL 232 (294)
T ss_pred EEecCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChhheeecchhhHHHHHHHhCCc------EEEEEec----cCCCC
Confidence 44556666554 33444455556666666665553332 333444433222 6777777 36888
Q ss_pred EEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 029913 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 121 y~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 175 (185)
-.-|+-|.|+-|.+. +|. -+.-.....+.+..+.+.-||-+.+..-++.+..
T Consensus 233 ~t~eSls~Y~tY~pr--Vg~-~eA~Rt~ISNIh~~G~p~veAa~~i~~li~~ml~ 284 (294)
T COG4302 233 STPESLSLYFTYAPR--VGL-PEADRTCISNIHQGGTPPVEAAAVIVYLIKEMLE 284 (294)
T ss_pred CCcccceeeEEecCc--cCC-chhhhHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 888888988877534 443 4455666777777888888886666655555544
No 81
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=20.60 E-value=2.3e+02 Score=17.62 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=7.4
Q ss_pred HHHHhhccccCCC
Q 029913 170 IRMLFHGILCIPE 182 (185)
Q Consensus 170 l~~~~~~~~~~~~ 182 (185)
++..+.+++|-|.
T Consensus 45 ~~~~l~aiL~SP~ 57 (64)
T PF07637_consen 45 LKEALQAILCSPS 57 (64)
T ss_pred HHHHHHHHHcCcc
Confidence 4445556677664
No 82
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.59 E-value=2.4e+02 Score=18.62 Aligned_cols=27 Identities=4% Similarity=-0.036 Sum_probs=20.2
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 029913 148 ACEAMFKPDMVCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 148 ~Le~~~~~~~s~eea~~l~~~al~~~~ 174 (185)
++++.-..++++++++++-.++++.+-
T Consensus 22 Iv~~LE~~~l~Lees~~lyeeg~~L~k 48 (80)
T PRK00977 22 IVTRLESGDLPLEESLAAFERGVALAR 48 (80)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 444444589999999999888887653
No 83
>PHA03148 hypothetical protein; Provisional
Probab=20.10 E-value=1.7e+02 Score=24.37 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=42.6
Q ss_pred EEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHhhc
Q 029913 119 FICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK--PDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 119 ~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~--~~~s~eea~~l~~~al~~~~~~ 176 (185)
-+|..+..+.....+ -...+...+.....+||.+- |..+.+.|+..+...++++..|
T Consensus 197 iVFcLNsI~~~~f~~-~V~~~~~~p~~~~a~eKYFlMFPP~dk~nAinFaa~Iv~~IC~G 255 (289)
T PHA03148 197 IVFCLNSICAHSFRP-RVRPDVTNPVLSLAMEKYFLMFPPKDKKNAVNFAASIVEIICQG 255 (289)
T ss_pred eEeeeechhhccccC-CcccCCCChHHHHHHHHHhcccCCCChhhhhhhhHHHHHHHhCC
Confidence 466667777654344 56677777778889999875 7889999999999888766543
Done!