BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029914
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=tig PE=3 SV=1
Length = 480
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + +++T + T++ +++V+ NLA +A IPGFRR KVPR L+Q LG R+
Sbjct: 12 QIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRR------GKVPRPILLQRLGTTRIK 64
Query: 167 KFVVQEIVRSTLTDYTKK 184
++E+++ + K+
Sbjct: 65 AAALEELIQDGIEQAVKQ 82
>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1
Length = 455
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E + +I + ++++ +A+++ ++ + LAR+A IPGFR+ KVPR L
Sbjct: 2 KVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRK------GKVPRQIL 54
Query: 157 IQILGEERVTKFVVQEIVRSTL 178
+Q +G E + +QE++ +L
Sbjct: 55 LQRIGTEYIKATTLQELIEDSL 76
>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=tig PE=3 SV=1
Length = 454
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K++ E ++ + +++ D TQ+ +D + LAR+ +PGFR+ KVP+ L
Sbjct: 2 KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTVN-LPGFRK------GKVPKQIL 54
Query: 157 IQILGEERVTKFVVQEIVRSTL 178
IQ LG R+ V+++++ +L
Sbjct: 55 IQRLGPNRIKASVLEDLIDDSL 76
>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=tig PE=3 SV=1
Length = 471
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ KVPR L+Q LG+ +
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64
Query: 167 KFVVQEIVRSTLTDYTKK 184
++E+++ + K+
Sbjct: 65 AAALEELLQDGIEQAIKQ 82
>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig
PE=3 SV=1
Length = 471
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + +++T + TQ+ +++V+ NL+R+ IPGFR+ KVPR L+Q LG+ +
Sbjct: 12 QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64
Query: 167 KFVVQEIVRSTLTDYTKK 184
++E+++ + K+
Sbjct: 65 AAALEELLQDGIEQAIKQ 82
>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig
PE=3 SV=1
Length = 464
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K++ E +I + +++ + T+ ++V+ NLA+S IPGFR KVPR L
Sbjct: 2 KVIQEKLPASQIGLEIEIPAETTKNTHEQVVKNLAKSVN-IPGFR------PGKVPRQIL 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKK 184
+Q LG + V V++E++ + L K+
Sbjct: 55 LQRLGTKAVKAAVIEELIENCLESALKQ 82
>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig
PE=3 SV=1
Length = 474
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ ++++++G+ +++V+++ LT L+R PGFR KVPR LIQ LGE +
Sbjct: 14 RVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVLIQRLGETALK 66
Query: 167 KFVVQEIVRSTL 178
++++V+ +L
Sbjct: 67 ANAIEDLVQQSL 78
>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=tig PE=3 SV=1
Length = 474
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 7/72 (9%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ ++++++G+ +++V+++ LT L+R PGFR KVPR LIQ LGE +
Sbjct: 14 RVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVLIQRLGETALK 66
Query: 167 KFVVQEIVRSTL 178
++++V+ +L
Sbjct: 67 ANAIEDLVQQSL 78
>sp|Q8DLI3|TIG_THEEB Trigger factor OS=Thermosynechococcus elongatus (strain BP-1)
GN=tig PE=3 SV=1
Length = 473
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 112 VDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQ 171
++++G +Q+V+++V+ +L R +PGFR KG K PR ++Q LG ER+ ++
Sbjct: 15 IEVSGTHSQQVYNQVVNDLLRHTQ-VPGFR--KG----KAPRQLVLQQLGRERLRYLAME 67
Query: 172 EIVRSTLTDYTKK 184
+++ + +K
Sbjct: 68 KLIEDAVKTAVEK 80
>sp|Q55511|TIG_SYNY3 Trigger factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=tig PE=3 SV=1
Length = 471
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E + ++ + +++ A+++V++ V+ L R+ IPGFRR KVPR +
Sbjct: 2 KVTQEKLPDSQVGLEIEIPATASKKVYENVVKKLTRTVN-IPGFRR------GKVPRAIV 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKK 184
IQ LG+ + ++E++ ++ K+
Sbjct: 55 IQRLGQSYIKATAIEELIDDSIKAAVKQ 82
>sp|A5GHT2|TIG_SYNPW Trigger factor OS=Synechococcus sp. (strain WH7803) GN=tig PE=3
SV=1
Length = 481
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ S+ ++ V V + + +Q +++ +T L+RS +PGFR+ KVPR L
Sbjct: 7 KVTTTSRPGSRLAVEVAVPAERSQASYEEAITRLSRSVN-LPGFRK------GKVPRTVL 59
Query: 157 IQILGEERVTKFVVQEIVRSTLTD 180
+Q LG R+ ++ +V S D
Sbjct: 60 VQQLGALRIRATALESLVESVWRD 83
>sp|Q3B0U0|TIG_SYNS9 Trigger factor OS=Synechococcus sp. (strain CC9902) GN=tig PE=3
SV=1
Length = 447
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ ES+ ++ V V + G+ +++ + +L+RS +PGFR+ KVPR L
Sbjct: 7 KVSTESRPSSRLAVTVTVPGERCTASYEEAIKSLSRSIN-LPGFRK------GKVPRSVL 59
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKK 184
+Q LG R+ +++++ S D K+
Sbjct: 60 VQQLGGVRIKATALEKLIDSAWRDAIKQ 87
>sp|Q7NDP0|TIG_GLOVI Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig
PE=3 SV=1
Length = 461
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E ++ + V++ G+ +++ ++K++ + R+A IPGFR K PR +
Sbjct: 2 KVTQEKLPRSQMGLNVEVEGEKSKQAYEKLVRDTMRTAR-IPGFR------PGKAPRQLV 54
Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKK 184
+Q G+ER+ ++ ++ S+L + ++
Sbjct: 55 LQFYGKERLRAQALENLIDSSLKEAIEQ 82
>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig
PE=3 SV=1
Length = 485
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
+I + ++++ + ++ +++++ RSA IPGFR+ KVPR+ LIQ LG+ +
Sbjct: 12 QISLEIEISPEMSKNAYEQIIKKYIRSAN-IPGFRK------GKVPRNILIQRLGKNYIK 64
Query: 167 KFVVQEIVRSTL 178
+ +++ + L
Sbjct: 65 AMALDDLINNCL 76
>sp|Q2JV31|TIG_SYNJA Trigger factor OS=Synechococcus sp. (strain JA-3-3Ab) GN=tig PE=3
SV=1
Length = 557
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ +++ + D +R ++K L L R+ IPGFR KG K PR+ +I+ +G ERV
Sbjct: 12 RVGLKIVVEADQVKRSYEKTLRQLERNIQ-IPGFR--KG----KAPRNLVIRQVGRERVM 64
Query: 167 KFVVQEIVRSTLTDYTK 183
V +++ + K
Sbjct: 65 ASAVDDLINEAIQQALK 81
>sp|Q3ANI7|TIG_SYNSC Trigger factor OS=Synechococcus sp. (strain CC9605) GN=tig PE=3
SV=1
Length = 469
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ E++ ++ V V + G+ + ++ +T+L+RS +PGFR+ KVPR L
Sbjct: 7 KVTTEARPSSRLAVTVTVPGERCKTSYEDAITSLSRSIN-LPGFRK------GKVPRTVL 59
Query: 157 IQILGEERVTKFVVQEIVRSTLTD 180
+Q LG R+ +++++ + D
Sbjct: 60 VQQLGGVRIKATALEKLIDNAWRD 83
>sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sst6 PE=3 SV=2
Length = 487
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 88 EDLITVKDAKIVVESQDEDKI-QVRVDLTGDATQRVFDKVLTNLA--------RSAPPIP 138
ED T++ I V++QDE+KI +VR+ L+ A FDK + A S PPI
Sbjct: 40 EDTFTLQAINIEVDTQDENKIEEVRIYLSTPA----FDKTILTSACITVRSYYPSQPPIV 95
Query: 139 GFRREKGGKTTKVPRDFLIQILGEER 164
EKGGK L+Q+ ER
Sbjct: 96 QLLDEKGGKHKYT--SLLLQLWKNER 119
>sp|Q0IE18|TIG_SYNS3 Trigger factor OS=Synechococcus sp. (strain CC9311) GN=tig PE=3
SV=1
Length = 449
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ V V + + +Q ++ ++ L+RS +PGFR+ KVPR L+Q LG R+
Sbjct: 17 RLAVEVAIPAERSQASYEAAISQLSRSVN-LPGFRK------GKVPRSVLVQQLGGLRIR 69
Query: 167 KFVVQEIVRSTLTDYTKK 184
++ +V + D K+
Sbjct: 70 ATALENLVDAIWRDTIKQ 87
>sp|Q1GYZ0|PYRC_METFK Dihydroorotase OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=pyrC PE=3 SV=1
Length = 345
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 8 MTIIPSKFQNI----ELFSPRSCRNYTLCHP-NAPKSVNFFHF-QNSSCFF---VRPSLY 58
M + +FQ + E + + N+ P N ++ H N + F +RP Y
Sbjct: 159 MVPLLERFQGLRVVFEHITTKDAANFVAGAPENVAATITAHHLLMNRNAMFNGGIRPHHY 218
Query: 59 CNPLMRRVQHVLKTVSAVDSG 79
C P+++R +H L V+A SG
Sbjct: 219 CLPVLKREEHRLALVAAATSG 239
>sp|Q2JQ33|TIG_SYNJB Trigger factor OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=tig
PE=3 SV=1
Length = 556
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ +++ + D +R ++K L L ++ IPGFR KG K PR+ +++ +G ER+
Sbjct: 12 RVGLKIVVEADRVKRSYEKTLRQLEQNIQ-IPGFR--KG----KAPRNLVVRQVGRERIL 64
Query: 167 KFVVQEIVRSTLTDYTKKV 185
V +++ + K+
Sbjct: 65 ASAVDDLINEAIQQAFKEA 83
>sp|A2AV37|EX3L1_DANRE Exocyst complex component 3-like protein OS=Danio rerio GN=exoc3l1
PE=2 SV=1
Length = 780
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 105 EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI-PGFR 141
E+ + V +D+ GD + V VL L +SAPP+ PG+R
Sbjct: 720 EEHVSVLLDIRGDVPKEVRKSVLDFLDQSAPPLPPGYR 757
>sp|Q50833|CSG_METVO S-layer protein (Fragment) OS=Methanococcus voltae GN=sla PE=1 SV=2
Length = 576
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 99 VVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG------------FRREKGG 146
+++S DE KI +++ G FDKV A PG ++ G
Sbjct: 296 ILKSGDEYKISLQLMKDGKVVAEKFDKVSATSALKMIYTPGNIGIVVNEAWENVGQDYGY 355
Query: 147 KTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTK 183
+T + +D + LGEE + + V I + T TD TK
Sbjct: 356 GSTLITKDVIALELGEEYIPDWEVVTIEKDTTTDNTK 392
>sp|Q1J199|TIG_DEIGD Trigger factor OS=Deinococcus geothermalis (strain DSM 11300)
GN=tig PE=3 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
S++ +K+ RV + R +D+V LAR +PGFR K PR L
Sbjct: 6 SKEGNKVSFRVAVPAAEVNRAYDQVWAGLARDV-RVPGFR------PGKAPRKVL----- 53
Query: 162 EERVTKFVVQEIVRSTL 178
E RV K V+ VR L
Sbjct: 54 ESRVGKGYVENEVRDRL 70
>sp|A9BD99|TIG_PROM4 Trigger factor OS=Prochlorococcus marinus (strain MIT 9211) GN=tig
PE=3 SV=1
Length = 471
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 97 KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
K+ +S + ++ V ++++ + + + L+ L+++A +PGFR+ KVP+ L
Sbjct: 7 KVKTKSMPDSRLAVELEISAKQCKESYQQALSKLSKTAN-LPGFRK------GKVPQAVL 59
Query: 157 IQILGEERVTKFVVQEIV 174
+Q +G +R+ +++++
Sbjct: 60 LQQVGAKRIQASAIEKLL 77
>sp|Q9RT21|TIG_DEIRA Trigger factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=tig PE=1 SV=3
Length = 465
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
S++ +K++ +V + R +D+V LAR +PGFR K PR +
Sbjct: 6 SKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDV-RVPGFR------PGKAPRKVI----- 53
Query: 162 EERVTKFVVQEIVRSTL--TDYTKKV 185
E RV K V+ VR L T Y++ +
Sbjct: 54 ENRVGKGYVESQVRDRLLETHYSQGL 79
>sp|A5GQ11|TIG_SYNR3 Trigger factor OS=Synechococcus sp. (strain RCC307) GN=tig PE=3
SV=1
Length = 491
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ + V + D + ++ + L+RS +PGFR+ +VP+ L+Q +G RV
Sbjct: 16 RLALEVGVPADRCKASYEAAVERLSRSVR-LPGFRK------GRVPKPVLLQQIGPLRVK 68
Query: 167 KFVVQEIVRSTLTDYTKK 184
++++V S L D ++
Sbjct: 69 ASALEDLVDSVLRDAVEQ 86
>sp|Q7MFB3|PYRC_VIBVY Dihydroorotase OS=Vibrio vulnificus (strain YJ016) GN=pyrC PE=3
SV=2
Length = 342
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSG 79
++P YC P+++R H L +SA SG
Sbjct: 211 IKPHFYCLPILKRNTHQLALISAATSG 237
>sp|Q8D3T9|PYRC_VIBVU Dihydroorotase OS=Vibrio vulnificus (strain CMCP6) GN=pyrC PE=3
SV=2
Length = 342
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSG 79
++P YC P+++R H L +SA SG
Sbjct: 211 IKPHFYCLPILKRNTHQLALISAATSG 237
>sp|Q5P7G6|HEM1_AROAE Glutamyl-tRNA reductase OS=Aromatoleum aromaticum (strain EbN1)
GN=hemA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 45 FQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDA 96
F + V P LY P ++HV + S +DS V + EP+ L VKDA
Sbjct: 72 FHHMPLSEVSPYLYTYPQRDAIRHVFRVASGLDSMV---LGEPQILGQVKDA 120
>sp|P56994|HEM1_NEIMB Glutamyl-tRNA reductase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=hemA PE=3 SV=1
Length = 415
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 53 VRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQD 104
+RP LY + V+H + +DS V + EP+ L +KDA V + Q+
Sbjct: 79 IRPYLYALDMQETVRHAFRVACGLDSMV---LGEPQILGQIKDAVRVAQEQE 127
>sp|Q7V991|TIG_PROMM Trigger factor OS=Prochlorococcus marinus (strain MIT 9313) GN=tig
PE=3 SV=1
Length = 479
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
++ V V + + Q ++ +T L+R+ +PGFR KG KVPR L+Q +G R+
Sbjct: 17 RLAVEVAVPAERCQANYEAAVTRLSRTTN-LPGFR--KG----KVPRAVLLQQIGPVRIR 69
Query: 167 KFVVQEIV 174
++ +V
Sbjct: 70 ATALESLV 77
>sp|Q7V2D5|CHLN_PROMP Light-independent protochlorophyllide reductase subunit N
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=chlN PE=3 SV=1
Length = 418
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 73 VSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLA- 131
V+ SG+E + T+ ED +K ++ES D++K+ + L + R F K+ N+
Sbjct: 130 VNYSGSGIETTFTQGED-GALKALVPLMESTDDEKLLLVGTLANNVEDR-FKKIFNNIGI 187
Query: 132 ---RSAPPIPGFRREKGGKTTKV 151
S PP K GK TKV
Sbjct: 188 TNVESFPPRQSTELPKIGKNTKV 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,042,807
Number of Sequences: 539616
Number of extensions: 2378768
Number of successful extensions: 7177
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 7168
Number of HSP's gapped (non-prelim): 47
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)