Query 029914
Match_columns 185
No_of_seqs 168 out of 1041
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p9y_A Trigger factor, TF; alp 99.9 3E-23 1E-27 159.5 12.4 82 95-184 3-84 (121)
2 2nsc_A Trigger factor, TF; cha 99.9 1.5E-23 5.3E-28 158.3 9.9 80 96-184 1-80 (109)
3 2d3o_1 Trigger factor, TF; rib 99.9 8.7E-24 3E-28 160.4 5.1 81 96-184 1-81 (112)
4 1t11_A Trigger factor, TF; hel 99.8 1.8E-19 6.2E-24 161.1 12.6 82 95-184 3-84 (392)
5 1w26_A Trigger factor, TF; cha 99.8 3.1E-19 1.1E-23 161.2 9.5 81 96-184 1-81 (432)
6 3gty_X Trigger factor, TF; cha 99.7 7.2E-18 2.5E-22 152.5 5.0 77 96-180 1-77 (433)
7 4a20_A Ubiquitin-like protein 56.9 12 0.00041 27.0 3.9 41 87-127 11-51 (98)
8 2uyz_B Small ubiquitin-related 36.1 47 0.0016 21.6 4.0 21 93-113 1-21 (79)
9 2kl8_A OR15; structural genomi 33.3 61 0.0021 23.0 4.4 37 100-137 34-70 (85)
10 4dbg_A Ranbp-type and C3HC4-ty 30.0 53 0.0018 24.2 3.8 33 95-127 24-56 (105)
11 2lxa_A Ubiquitin-like protein 29.7 28 0.00094 24.4 2.1 32 96-127 2-33 (87)
12 2ygw_A Malonyl-COA decarboxyla 27.9 20 0.00068 33.3 1.3 22 121-142 276-306 (460)
13 3kg0_A Snoab; polyketide, anth 27.8 35 0.0012 25.3 2.5 36 106-143 24-59 (128)
14 1v2y_A 3300001G02RIK protein; 27.2 88 0.003 22.8 4.6 33 95-127 7-41 (105)
15 2j0w_A Lysine-sensitive aspart 24.7 48 0.0017 29.7 3.2 65 66-130 382-447 (449)
16 2v9v_A Selenocysteine-specific 24.5 1.1E+02 0.0036 21.8 4.5 50 114-174 59-114 (135)
17 4go7_X Aspartokinase; transfer 22.6 9.9 0.00034 30.9 -1.6 63 66-130 111-176 (200)
18 1wgd_A Homocysteine-responsive 22.5 70 0.0024 21.7 3.1 36 94-129 6-41 (93)
19 2p06_A Hypothetical protein AF 21.5 2.1E+02 0.0071 21.2 5.6 49 120-183 29-77 (114)
No 1
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=99.90 E-value=3e-23 Score=159.49 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=79.4
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029914 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 174 (185)
Q Consensus 95 ~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI 174 (185)
.|+++++++++++++|+|+|++++++++++++|++++++++ ||||||| |||+++|+++||+ .|++|+++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRkG------KvP~~vi~k~yG~-~v~~ea~~~~i 74 (121)
T 1p9y_A 3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRKG------KVPMNIVAQRYGA-SVRQDVLGDLM 74 (121)
T ss_dssp -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCTT------CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCCC------CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 9999999 9999999999998 59999999999
Q ss_pred HHHHHHHHhh
Q 029914 175 RSTLTDYTKK 184 (185)
Q Consensus 175 ~~a~~eAvee 184 (185)
+++|.+|+++
T Consensus 75 ~~~~~~ai~e 84 (121)
T 1p9y_A 75 SRNFIDAIIK 84 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 2
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=99.90 E-value=1.5e-23 Score=158.33 Aligned_cols=80 Identities=20% Similarity=0.427 Sum_probs=78.1
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (185)
Q Consensus 96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~ 175 (185)
|+++++++++++++|+|+|++++++++++++|++++++++ ||||||| |||+++|+++||+ .|++|+++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~k~yG~-~v~~ea~~~~i~ 72 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRKG------RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCTT------CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCCC------CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 9999999 9999999999997 699999999999
Q ss_pred HHHHHHHhh
Q 029914 176 STLTDYTKK 184 (185)
Q Consensus 176 ~a~~eAvee 184 (185)
+ |.+|+++
T Consensus 73 ~-~~~ai~e 80 (109)
T 2nsc_A 73 L-IPDTLKD 80 (109)
T ss_dssp T-HHHHTTT
T ss_pred H-HHHHHHH
Confidence 9 9999986
No 3
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.88 E-value=8.7e-24 Score=160.36 Aligned_cols=81 Identities=22% Similarity=0.467 Sum_probs=70.0
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (185)
Q Consensus 96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~ 175 (185)
|++++++ ++++++|+|+|++++++++++++|++++++++ ||||||| |||+++|+++||++.|++|+++++|+
T Consensus 1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~k~yG~~~v~~ea~~~~i~ 72 (112)
T 2d3o_1 1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRPG------KAPRKVIENRVGKGYVESQVRDRLLE 72 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCTT------CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCCC------CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8899999 99999999999999999999999999999999 9999999 99999999999955799999999999
Q ss_pred HHHHHHHhh
Q 029914 176 STLTDYTKK 184 (185)
Q Consensus 176 ~a~~eAvee 184 (185)
++|.+|+++
T Consensus 73 ~~~~~ai~e 81 (112)
T 2d3o_1 73 THYSQGLRE 81 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999986
No 4
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.80 E-value=1.8e-19 Score=161.08 Aligned_cols=82 Identities=20% Similarity=0.383 Sum_probs=79.9
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029914 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 174 (185)
Q Consensus 95 ~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI 174 (185)
.|+++++++++++++|+|+||+++++++++++|++++++++ ||||||| |||+++|+++||+ .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~~i~k~yG~-~v~~ea~~~~~ 74 (392)
T 1t11_A 3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRKG------KVPMKMVAKMYGK-AVRQDVLGEVM 74 (392)
T ss_dssp CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCSS------CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCCC------CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999 9999999 9999999999996 69999999999
Q ss_pred HHHHHHHHhh
Q 029914 175 RSTLTDYTKK 184 (185)
Q Consensus 175 ~~a~~eAvee 184 (185)
+++|.+|+++
T Consensus 75 ~~~~~~ai~e 84 (392)
T 1t11_A 75 QRHFIEAIVK 84 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 5
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.78 E-value=3.1e-19 Score=161.16 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=79.1
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (185)
Q Consensus 96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~ 175 (185)
|+++++++++++++|+|+||+++++++++++|++++++++ ||||||| |||+++|+++||+ .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRkG------KvP~~vi~~~yG~-~v~~ea~~~~~~ 72 (432)
T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRKG------KVPMNIVAQRYGA-SVRQDVLGDLMS 72 (432)
T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCCS------SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCCC------CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 9999999 9999999999997 699999999999
Q ss_pred HHHHHHHhh
Q 029914 176 STLTDYTKK 184 (185)
Q Consensus 176 ~a~~eAvee 184 (185)
++|.+|+++
T Consensus 73 ~~~~~ai~e 81 (432)
T 1w26_A 73 RNFIDAIIK 81 (432)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999986
No 6
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=99.70 E-value=7.2e-18 Score=152.47 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=71.5
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029914 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (185)
Q Consensus 96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~ 175 (185)
|++++++.+++.+.|+|+||+++++++++++|++++++++ ||||||| |||+.||+++||+ .++.++++.+++
T Consensus 1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRkG------KvP~~vi~k~yG~-~v~~ev~~~l~~ 72 (433)
T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRKG------RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (433)
T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--CC------CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCCC------CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 9999999 9999999999999 599999999998
Q ss_pred HHHHH
Q 029914 176 STLTD 180 (185)
Q Consensus 176 ~a~~e 180 (185)
.+|..
T Consensus 73 ~~~~~ 77 (433)
T 3gty_X 73 LIPDT 77 (433)
T ss_dssp TSTTT
T ss_pred HHHHH
Confidence 87643
No 7
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=56.88 E-value=12 Score=27.00 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=28.4
Q ss_pred ccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029914 87 PEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (185)
Q Consensus 87 ~~~~~s~~~MkV~Ve~le~~~ikL~VtVp~eeveka~dkal 127 (185)
-+|......|+|.|+.+.+....++|+|+..++=..+.+.+
T Consensus 11 ~~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 51 (98)
T 4a20_A 11 DDDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 51 (98)
T ss_dssp -------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHH
T ss_pred CcccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHH
Confidence 34455677899999999999889988988877766666655
No 8
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=36.05 E-value=47 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.7
Q ss_pred ccCcEEEEEecCCceEEEEEE
Q 029914 93 VKDAKIVVESQDEDKIQVRVD 113 (185)
Q Consensus 93 ~~~MkV~Ve~le~~~ikL~Vt 113 (185)
++.|++.|...++..+.++|.
T Consensus 1 m~~m~i~vk~~~g~~~~~~v~ 21 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIHFKVK 21 (79)
T ss_dssp CCEEEEEEECTTCCEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEC
Confidence 456999999999887776665
No 9
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=33.30 E-value=61 Score=23.04 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=32.9
Q ss_pred EEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCC
Q 029914 100 VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI 137 (185)
Q Consensus 100 Ve~le~~~ikL~VtVp~eeveka~dkalkklaK~akpI 137 (185)
.-+++++..+++++=-++++.+.+.+....+++..+ |
T Consensus 34 tytldgndleiritgvpeqvrkelakeaerlakefn-i 70 (85)
T 2kl8_A 34 TYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFN-I 70 (85)
T ss_dssp EEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTC-C
T ss_pred EEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcC-e
Confidence 356889999999999999999999999999999887 5
No 10
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=29.99 E-value=53 Score=24.22 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=24.9
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029914 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (185)
Q Consensus 95 ~MkV~Ve~le~~~ikL~VtVp~eeveka~dkal 127 (185)
+|+|.+++.+.....++++|++.++=..+.+.+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I 56 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMV 56 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHH
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHH
Confidence 489999999988889999998866544444433
No 11
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=29.70 E-value=28 Score=24.42 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=26.3
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029914 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (185)
Q Consensus 96 MkV~Ve~le~~~ikL~VtVp~eeveka~dkal 127 (185)
|+|.|+.+.+....+.|++++.++=..+.+.+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 33 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 33 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHH
Confidence 89999999999999999988777666665555
No 12
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=27.91 E-value=20 Score=33.27 Aligned_cols=22 Identities=41% Similarity=0.821 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhh---------cCCCCCCccc
Q 029914 121 RVFDKVLTNLAR---------SAPPIPGFRR 142 (185)
Q Consensus 121 ka~dkalkklaK---------~akpIPGFRK 142 (185)
--+.++..+|.+ +..||||||+
T Consensus 276 fLIKrVV~~L~~E~P~lktF~TLSPIPGF~~ 306 (460)
T 2ygw_A 276 FLIKRVVKELQREFPHLGVFSSLSPIPGFTK 306 (460)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECBC-CCHHH
T ss_pred HHHHHHHHHHHHhCcCccceeecCCCccHHH
Confidence 345555555554 4569999996
No 13
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=27.84 E-value=35 Score=25.32 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=26.8
Q ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCcccC
Q 029914 106 DKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRRE 143 (185)
Q Consensus 106 ~~ikL~VtVp~eeveka~dkalkklaK~akpIPGFRKG 143 (185)
..+-.+++|.++ +++|.+++.++...++-.|||.-.
T Consensus 24 i~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~ 59 (128)
T 3kg0_A 24 VTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRH 59 (128)
T ss_dssp EEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEE
T ss_pred EEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEE
Confidence 344567888887 888888888887775559999643
No 14
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.20 E-value=88 Score=22.78 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=22.8
Q ss_pred CcEEEEEecCCceEEEEEEeC--HHHHHHHHHHHH
Q 029914 95 DAKIVVESQDEDKIQVRVDLT--GDATQRVFDKVL 127 (185)
Q Consensus 95 ~MkV~Ve~le~~~ikL~VtVp--~eeveka~dkal 127 (185)
.|+|.|.++++..+.|.|+-+ -+++++++++..
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~ 41 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV 41 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHh
Confidence 499999999999888666522 244555555554
No 15
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=24.69 E-value=48 Score=29.69 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred eeeceeeceeccCCcccccCCccc-cccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 029914 66 VQHVLKTVSAVDSGVEVSITEPED-LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (185)
Q Consensus 66 ~~~~~~~vsav~sg~~~s~~~~~~-~~s~~~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkkl 130 (185)
+.+-+.=||.||.|+....--... +-++.+.+|..-....+++.+.+-|+.++.+++++.....+
T Consensus 382 ~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~ini~mIsqg~Se~~Is~vV~~~d~~~Av~~lh~~f 447 (449)
T 2j0w_A 382 VEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNL 447 (449)
T ss_dssp EEEEEEEEEEEESSCTTSSSHHHHHHSSCTTSCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EeCCeEEEEEECCCccccccHHHHHHHHHhCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHH
Confidence 445677799999998765221222 24467777777888899999999999999999998877654
No 16
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=24.46 E-value=1.1e+02 Score=21.82 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=31.8
Q ss_pred eCHHHHHHHHHH---HHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCH---HHHHHHHHHHHH
Q 029914 114 LTGDATQRVFDK---VLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGE---ERVTKFVVQEIV 174 (185)
Q Consensus 114 Vp~eeveka~dk---alkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~---e~V~~eai~elI 174 (185)
+..+.+++..++ .|..+=++-+ -|+| +|+.-+.+++.+ ..+...+++.++
T Consensus 59 ~~~~~~~~l~~~l~~~L~~yH~~~P----~~~G-------~~keeLr~~~~~~~~~~~~~~ll~~l~ 114 (135)
T 2v9v_A 59 ISTERYQAWWQAVTRALEEFHSRYP----LRPG-------LAREELRSRYFSRLPARVYQALLEEWS 114 (135)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHCT----TSSC-------EEHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHhCC----CccC-------CCHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 666666555554 4555556666 6889 999999998754 344555555444
No 17
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=22.62 E-value=9.9 Score=30.92 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=43.6
Q ss_pred eeeceeeceeccCCcccccCCccc-cccc--cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 029914 66 VQHVLKTVSAVDSGVEVSITEPED-LITV--KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (185)
Q Consensus 66 ~~~~~~~vsav~sg~~~s~~~~~~-~~s~--~~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkkl 130 (185)
+..-+.=||.||.|+....-=... |-+| ++.+|..- ..+++++.+-|+.++.+++++...+.+
T Consensus 111 ~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI--stSEi~IS~vV~~~d~~~Av~aLH~~F 176 (200)
T 4go7_X 111 YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI--STSEIRISVLCRDTELDKAVVALHEAF 176 (200)
T ss_dssp EECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE--EECSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE--EccCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 344566799999999765222222 2233 34444333 378999999999999999999888765
No 18
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.52 E-value=70 Score=21.70 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=24.4
Q ss_pred cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHH
Q 029914 94 KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 129 (185)
Q Consensus 94 ~~MkV~Ve~le~~~ikL~VtVp~eeveka~dkalkk 129 (185)
..|+|.|+...+....++|+++.+++=..+.+.+..
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~ 41 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR 41 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH
Confidence 459999999887755677777666554555554444
No 19
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=21.53 E-value=2.1e+02 Score=21.20 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Q 029914 120 QRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTK 183 (185)
Q Consensus 120 eka~dkalkklaK~akpIPGFRKGKGgk~~KVP~~Vl~k~yG~e~V~~eai~elI~~a~~eAve 183 (185)
++-+.+.-.++.|.+. ||| ..|+.-.. |.++++.....+++ +.+.+|++
T Consensus 29 ekflremhakymkrvs-----rpg------ntprpwfd--fseerllsrlfeem--delreave 77 (114)
T 2p06_A 29 EKFLREMHAKYMKRVS-----RPG------NTPRPWFD--FSEERLLSRLFEEM--DELREAVE 77 (114)
T ss_dssp HHHHHHHHHHHHHHHT-----STT------CCSCHHHH--SCHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-----CCC------CCCCCccc--ccHHHHHHHHHHHH--HHHHHHHH
Confidence 3445555667778888 888 78877664 66666665555544 22445554
Done!