BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029917
         (185 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P23172|RDRP_SCVLB Probable RNA-directed RNA polymerase OS=Saccharomyces cerevisiae
            virus L-BC GN=gag-pol PE=2 SV=2
          Length = 1512

 Score = 32.3 bits (72), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 82   FGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASG 141
            + K   H +      + E   P     ++ W        R RA     G +   +P    
Sbjct: 983  YAKVLEHCRELFIMARAEGKRPMRMKWQEYW--------RQRAVIMPGGSVHSQHPVEQD 1034

Query: 142  AIRIYLREVRDSQAKARGIPYKKKK 166
             IR+  RE+R  +  A  +PYK++K
Sbjct: 1035 VIRVLPREIRSKKGVASVMPYKEQK 1059


>sp|P85446|ATPB_PENGL ATP synthase subunit beta, mitochondrial (Fragments) OS=Penicillium
           glabrum GN=atp2 PE=1 SV=2
          Length = 114

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 83  GKTKVHLQGCVFFGQP-EPPGPCSCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFAS 140
           GKTKV L     FGQ  EPPG       QA   + AL+GR+R    E G  P  +P  S
Sbjct: 49  GKTKVAL----VFGQMNEPPG-ARARFTQAGSEVSALLGRMR-GISELGIYPAVDPLDS 101


>sp|Q0ID96|PYRB_SYNS3 Aspartate carbamoyltransferase OS=Synechococcus sp. (strain CC9311)
           GN=pyrB PE=3 SV=1
          Length = 349

 Score = 30.4 bits (67), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 69  SNHVLDFL-RYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLD 116
           ++H+L  L RY   FG T   L+ C F G    PGP +  ++ + G LD
Sbjct: 260 TDHLLTNLDRYHRDFGLTHERLRRCAFSGPVLHPGPVNRGVEMSGGLLD 308


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,712,288
Number of Sequences: 539616
Number of extensions: 3012252
Number of successful extensions: 7933
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7926
Number of HSP's gapped (non-prelim): 10
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)