Query 029917
Match_columns 185
No_of_seqs 82 out of 84
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 08:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 89.7 0.33 1.1E-05 36.8 4.0 70 43-140 25-95 (324)
2 3nrw_A Phage integrase/site-sp 80.6 3.5 0.00012 28.1 5.3 70 44-140 32-103 (117)
3 1a0p_A Site-specific recombina 78.3 4.2 0.00014 30.3 5.5 70 43-140 26-97 (290)
4 2khq_A Integrase; all-alpha, s 71.9 6.5 0.00022 25.5 4.5 62 46-139 30-94 (110)
5 2eqe_A Tumor necrosis factor, 70.5 1.9 6.4E-05 29.3 1.6 26 80-105 11-36 (48)
6 2kkp_A Phage integrase; SAM-li 66.1 13 0.00043 24.2 5.0 54 60-139 46-101 (117)
7 2oxo_A Integrase; DNA-binding 64.0 13 0.00046 22.9 4.6 62 46-139 29-93 (103)
8 2zxj_A Transcriptional regulat 63.7 3.2 0.00011 30.6 1.8 21 114-134 76-96 (120)
9 2xz9_A Phosphoenolpyruvate-pro 63.1 12 0.00041 31.9 5.6 33 116-148 62-116 (324)
10 2x0s_A Pyruvate phosphate diki 62.7 8.4 0.00029 37.4 5.0 24 134-157 683-709 (913)
11 3zq7_A KDP operon transcriptio 59.8 4.5 0.00015 27.6 2.0 21 113-133 67-87 (102)
12 1tac_A TAT protein; transcript 59.8 4.3 0.00015 30.3 1.9 15 154-168 39-53 (86)
13 2z9m_A Response regulator YYCF 56.9 5.1 0.00017 28.5 1.8 21 113-133 75-95 (120)
14 2kiw_A INT protein; alpha, str 55.9 36 0.0012 22.0 5.8 57 50-139 32-91 (111)
15 2ols_A Phosphoenolpyruvate syn 54.3 12 0.0004 35.7 4.4 38 120-157 562-629 (794)
16 2kkv_A Integrase; protein stru 54.1 45 0.0015 22.1 7.0 61 51-139 35-98 (121)
17 3mi9_C Protein TAT; P-TEFB, HI 52.2 3.4 0.00012 30.8 0.3 16 153-168 38-53 (86)
18 1z19_A Integrase; protein-DNA 52.0 17 0.00058 27.0 4.1 64 45-139 28-93 (283)
19 2kd1_A DNA integration/recombi 51.6 22 0.00074 23.3 4.2 51 62-139 46-99 (118)
20 2wqd_A Phosphoenolpyruvate-pro 49.4 21 0.00072 33.1 5.1 44 114-157 311-378 (572)
21 2kj8_A Putative prophage CPS-5 48.7 40 0.0014 22.4 5.3 56 52-139 39-97 (118)
22 2key_A Putative phage integras 48.5 13 0.00045 24.2 2.7 51 62-139 47-101 (112)
23 3rjp_A COVR; winged helix-turn 47.7 9.3 0.00032 25.7 1.9 18 113-130 61-78 (96)
24 2hwg_A Phosphoenolpyruvate-pro 47.5 19 0.00065 33.4 4.5 35 114-148 309-365 (575)
25 2k4j_A Putative transcriptiona 42.1 19 0.00065 25.6 2.9 21 112-132 79-99 (115)
26 3a2a_A Voltage-gated hydrogen 39.1 13 0.00045 26.0 1.6 22 115-136 37-58 (58)
27 2hqn_A Putative transcriptiona 39.1 14 0.00047 25.5 1.7 21 112-132 67-87 (109)
28 1opc_A OMPR, OMPRC; transcript 37.5 14 0.00046 25.6 1.5 21 112-132 69-89 (110)
29 1h6z_A Pyruvate phosphate diki 37.1 16 0.00055 36.0 2.4 37 114-157 670-709 (913)
30 1h1j_S THO1 protein; SAP domai 35.7 26 0.00088 23.2 2.6 26 112-137 25-50 (51)
31 1gxq_A PHOB, phosphate regulon 34.9 20 0.0007 24.5 2.1 20 112-131 69-88 (106)
32 2kzy_A ZNF216-A20, zfand5 prot 34.8 18 0.00061 25.4 1.7 23 86-108 14-36 (62)
33 2khv_A Phage integrase; soluti 33.6 76 0.0026 20.6 4.7 51 60-139 40-94 (106)
34 1vbg_A Pyruvate,orthophosphate 33.0 39 0.0013 32.9 4.4 26 133-158 662-690 (876)
35 2kj5_A Phage integrase; GFT PS 32.8 55 0.0019 21.2 3.9 49 63-139 47-98 (116)
36 2hwv_A DNA-binding response re 31.7 20 0.00069 25.7 1.6 21 112-132 81-101 (121)
37 2pk2_A Cyclin-T1, protein TAT; 30.4 11 0.00037 32.3 0.0 15 146-162 318-332 (358)
38 3lys_A Prophage PI2 protein 01 29.9 1.2E+02 0.0041 19.9 6.0 62 48-140 36-99 (112)
39 2c7n_A Rabex-5, GEF 1, RAB gua 29.8 16 0.00055 26.5 0.9 24 87-110 18-41 (74)
40 1kbl_A PPDK, pyruvate phosphat 28.7 43 0.0015 32.6 3.9 26 133-158 655-683 (873)
41 3qfs_A CPR, P450R, NADPH--cyto 28.5 29 0.001 30.8 2.5 46 68-113 108-153 (458)
42 2e1f_A Werner syndrome ATP-dep 27.3 34 0.0012 24.8 2.2 23 140-162 14-36 (103)
43 1z1b_A Integrase; protein-DNA 27.3 66 0.0023 24.9 4.0 62 47-139 103-166 (356)
44 3q9v_A DNA-binding response re 27.3 40 0.0014 24.7 2.7 19 113-131 99-117 (133)
45 2kob_A Uncharacterized protein 27.0 60 0.002 20.6 3.2 29 111-139 62-92 (108)
46 2dkz_A Hypothetical protein LO 26.1 27 0.00094 25.7 1.5 21 59-79 10-30 (84)
47 2a25_A Ubiquitin ligase SIAH1; 26.0 14 0.00046 29.1 -0.1 34 84-124 24-61 (193)
48 1am7_A Lysozyme; glycosidase, 25.9 40 0.0014 26.7 2.6 17 116-132 136-152 (158)
49 4fxe_A Antitoxin RELB; toxin/a 24.5 97 0.0033 21.7 4.1 35 120-164 14-48 (79)
50 3qe2_A CPR, P450R, NADPH--cyto 23.6 40 0.0014 30.7 2.5 46 68-113 268-313 (618)
51 2lna_A AFG3-like protein 2; st 23.0 64 0.0022 23.2 3.0 26 109-134 61-86 (99)
52 2kj9_A Integrase; DNA_BRE_C su 22.7 85 0.0029 21.1 3.5 49 63-138 51-101 (118)
53 1v5r_A Growth-arrest-specific 22.6 14 0.0005 27.8 -0.5 14 47-60 63-76 (97)
54 3oj3_I Tumor necrosis factor a 22.5 21 0.00072 24.2 0.3 20 86-105 20-39 (49)
55 2rhf_A DNA helicase RECQ; HRDC 22.4 58 0.002 21.6 2.5 22 141-162 5-26 (77)
56 2kv2_A Bloom syndrome protein; 22.1 43 0.0015 22.9 1.8 20 143-162 9-28 (85)
57 2lep_A Rhomboid protease GLPG 26.7 20 0.00069 24.2 0.0 15 135-149 8-22 (69)
58 2osa_A N-chimaerin; RHO-GAP, G 21.1 59 0.002 24.9 2.6 35 117-151 53-94 (202)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=89.67 E-value=0.33 Score=36.84 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=51.5
Q ss_pred hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029917 43 QKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL 122 (185)
Q Consensus 43 QKrrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL 122 (185)
.-+++|+.|..|+.... +.+...+..||.+|+.++-..| .+..++...+.-|
T Consensus 25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l 76 (324)
T 1xo0_A 25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL 76 (324)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence 34568899999998763 2455668899999999874322 3557899999999
Q ss_pred HHHHHHhCCC-CCCCCccc
Q 029917 123 RAAYEENGGL-PETNPFAS 140 (185)
Q Consensus 123 RAafeE~Gg~-pE~NPF~a 140 (185)
++.|+-.+.. +..||+..
T Consensus 77 ~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 77 NMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHH
Confidence 9999987643 34688743
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=80.64 E-value=3.5 Score=28.11 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 029917 44 KRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLR 123 (185)
Q Consensus 44 Krrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLR 123 (185)
-+++++.|..||.... -..+...+..||.+|+.|+-.. ..+..|+-..+.-||
T Consensus 32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~--------------------------~~s~~Ti~~~ls~lr 84 (117)
T 3nrw_A 32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGS--------------------------DVSPATLNGEMQTLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTS--------------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHH
Confidence 3578889999997632 1256677889999999987421 135568888888899
Q ss_pred HHHHHh--CCCCCCCCccc
Q 029917 124 AAYEEN--GGLPETNPFAS 140 (185)
Q Consensus 124 AafeE~--Gg~pE~NPF~a 140 (185)
+.|.-. -|.-+.||+..
T Consensus 85 ~f~~~l~~~g~i~~nP~~~ 103 (117)
T 3nrw_A 85 NWLEYLARIDVVDEDLPEK 103 (117)
T ss_dssp HHHHHHHHTTSSCTTSGGG
T ss_pred HHHHHHHHcCCcccCHHHH
Confidence 888743 24456899753
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=78.34 E-value=4.2 Score=30.28 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=47.9
Q ss_pred hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029917 43 QKRRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRL 122 (185)
Q Consensus 43 QKrrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL 122 (185)
.-+..++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-|
T Consensus 26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l 77 (290)
T 1a0p_A 26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence 3456788899999887 3467777899999999885321 13556788899999
Q ss_pred HHHHHHh--CCCCCCCCccc
Q 029917 123 RAAYEEN--GGLPETNPFAS 140 (185)
Q Consensus 123 RAafeE~--Gg~pE~NPF~a 140 (185)
+++|... -+..+.|||..
T Consensus 78 ~~~~~~~~~~~~i~~np~~~ 97 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSAH 97 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTSC
T ss_pred HHHHHHHHhCCCccCChhhh
Confidence 9998854 23456899853
No 4
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=71.85 E-value=6.5 Score=25.47 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 029917 46 RDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAA 125 (185)
Q Consensus 46 rdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAa 125 (185)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ ..+..++..++..||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 344557777753 45666788999999988631 12456888999999999
Q ss_pred HHH---hCCCCCCCCcc
Q 029917 126 YEE---NGGLPETNPFA 139 (185)
Q Consensus 126 feE---~Gg~pE~NPF~ 139 (185)
|+- .|. -+.||+.
T Consensus 79 ~~~a~~~~~-i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGY-VIKNPTY 94 (110)
T ss_dssp HHHHHHTTC-CCCCGGG
T ss_pred HHHHHHCCC-cccCccc
Confidence 974 343 4689984
No 5
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=70.52 E-value=1.9 Score=29.27 Aligned_cols=26 Identities=46% Similarity=1.017 Sum_probs=21.8
Q ss_pred ccCCceeeecccccccCCCCCCCCCC
Q 029917 80 DQFGKTKVHLQGCVFFGQPEPPGPCS 105 (185)
Q Consensus 80 DqfGkTkVH~~~C~ffg~p~ppapC~ 105 (185)
|+.|-.|--..+|+|||-|.-.+=|+
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 66777788899999999998777764
No 6
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=66.06 E-value=13 Score=24.22 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=37.9
Q ss_pred CCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCC
Q 029917 60 PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEEN--GGLPETNP 137 (185)
Q Consensus 60 PPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~--Gg~pE~NP 137 (185)
.-+.|..-+..||.+|+.++-.. ..+..++...+..||++|+-. -|.-+.||
T Consensus 46 g~~~l~~It~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP 99 (117)
T 2kkp_A 46 GSIPLKKLQPADIQRLYASKLES--------------------------GLSPTRVRYIHVVLHEAMSQARESGLLLQNP 99 (117)
T ss_dssp CTSCTTTCCHHHHHHHHHHHHHT--------------------------TCCHHHHHHHHHHHHHHHHHHHTTTSCSSCG
T ss_pred CceEHHHCCHHHHHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHHHHHHHHHCCCcccCc
Confidence 34566777889999999886321 124568889999999999743 13345899
Q ss_pred cc
Q 029917 138 FA 139 (185)
Q Consensus 138 F~ 139 (185)
+.
T Consensus 100 ~~ 101 (117)
T 2kkp_A 100 TE 101 (117)
T ss_dssp GG
T ss_pred cc
Confidence 84
No 7
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=63.95 E-value=13 Score=22.85 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 029917 46 RDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAA 125 (185)
Q Consensus 46 rdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAa 125 (185)
..++.|..|+.+ +.|..-+..||.+|+.++... .+..++...+..||++
T Consensus 29 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~---------------------------~~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDE---------------------------GKAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHT---------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHH
Confidence 445556666643 456667889999999886321 1346788899999999
Q ss_pred HHH---hCCCCCCCCcc
Q 029917 126 YEE---NGGLPETNPFA 139 (185)
Q Consensus 126 feE---~Gg~pE~NPF~ 139 (185)
|+- .|. -+.||+.
T Consensus 78 ~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHTTS-CSSCTTC
T ss_pred HHHHHHcCC-CCCChHh
Confidence 873 344 4679985
No 8
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=63.66 E-value=3.2 Score=30.61 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 029917 114 SLDALIGRLRAAYEENGGLPE 134 (185)
Q Consensus 114 SLDALIGRLRAafeE~Gg~pE 134 (185)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999988776653
No 9
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=63.05 E-value=12 Score=31.94 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCC---------------------CCCCCc-cchhHHHHHH
Q 029917 116 DALIGRLRAAYEENGGL---------------------PETNPF-ASGAIRIYLR 148 (185)
Q Consensus 116 DALIGRLRAafeE~Gg~---------------------pE~NPF-~araVR~YLR 148 (185)
+...--++.+++.+++. .|.||| +.|+||+||.
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~ 116 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLD 116 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeecc
Confidence 34444667777776664 267997 9999999998
No 10
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=62.67 E-value=8.4 Score=37.42 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.3
Q ss_pred CCCCc-cchhHHHHHH--HHhHHHhhh
Q 029917 134 ETNPF-ASGAIRIYLR--EVRDSQAKA 157 (185)
Q Consensus 134 E~NPF-~araVR~YLR--eVRd~QAkA 157 (185)
|.||| |.|++|+||. |+=+.|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 67996 8999999998 777888765
No 11
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=59.84 E-value=4.5 Score=27.56 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 029917 113 GSLDALIGRLRAAYEENGGLP 133 (185)
Q Consensus 113 GSLDALIGRLRAafeE~Gg~p 133 (185)
.+||..|-|||..+++.++.|
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 489999999999998876543
No 12
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=59.83 E-value=4.3 Score=30.27 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=12.1
Q ss_pred HhhhhCCchhhhhhc
Q 029917 154 QAKARGIPYKKKKKK 168 (185)
Q Consensus 154 QAkArgi~y~kkk~k 168 (185)
+-|.-||+|-+||||
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 458899999888765
No 13
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=56.86 E-value=5.1 Score=28.45 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 029917 113 GSLDALIGRLRAAYEENGGLP 133 (185)
Q Consensus 113 GSLDALIGRLRAafeE~Gg~p 133 (185)
.+||.+|.|||..+++.++.+
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~~ 95 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 489999999999998766543
No 14
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=55.94 E-value=36 Score=21.96 Aligned_cols=57 Identities=5% Similarity=0.109 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH-
Q 029917 50 TFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE- 128 (185)
Q Consensus 50 tf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE- 128 (185)
-|. |+.+ +.|..-+..||.+|+.++.+ ..+..++..++..||++|.-
T Consensus 32 ~i~-~~g~----~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A 79 (111)
T 2kiw_A 32 AIE-RFNT----KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYA 79 (111)
T ss_dssp HHH-HTTS----SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHCc----CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHH
Confidence 345 5543 45666788999999988641 12456888899999999874
Q ss_pred --hCCCCCCCCcc
Q 029917 129 --NGGLPETNPFA 139 (185)
Q Consensus 129 --~Gg~pE~NPF~ 139 (185)
.|. -+.||+.
T Consensus 80 ~~~~~-i~~nP~~ 91 (111)
T 2kiw_A 80 YDTRL-IKAMPSE 91 (111)
T ss_dssp HHTTS-CSCCTTT
T ss_pred HHhCC-hhhCccc
Confidence 343 4689984
No 15
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=54.27 E-value=12 Score=35.68 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCC-------------------------CCCCc-cchhHHHHHH----HHhHHHhhh
Q 029917 120 GRLRAAYEENGGLP-------------------------ETNPF-ASGAIRIYLR----EVRDSQAKA 157 (185)
Q Consensus 120 GRLRAafeE~Gg~p-------------------------E~NPF-~araVR~YLR----eVRd~QAkA 157 (185)
.-++.+++.++++| |.||| +.|.+|+||. |+=+.|.+|
T Consensus 562 ~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 562 EGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 56677778777654 78995 8899999998 666667655
No 16
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=54.15 E-value=45 Score=22.09 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH--
Q 029917 51 FGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE-- 128 (185)
Q Consensus 51 f~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE-- 128 (185)
|..|+.....-+.|..-+..||.+||..+... .+..++..++.-||++|.-
T Consensus 35 l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~ 87 (121)
T 2kkv_A 35 LELYIFPHIGSSDIRQLKTSHLLAPIKEVDTS---------------------------GKHDVAQRLQQRVTAIMRYAV 87 (121)
T ss_dssp HHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHT---------------------------TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchhcCCCHHHcCHHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 33444333334567777889999999875321 1346788899999999874
Q ss_pred -hCCCCCCCCcc
Q 029917 129 -NGGLPETNPFA 139 (185)
Q Consensus 129 -~Gg~pE~NPF~ 139 (185)
.|. -+.||+.
T Consensus 88 ~~~~-i~~NP~~ 98 (121)
T 2kkv_A 88 QNDY-IDSNPAS 98 (121)
T ss_dssp HTTS-SCSCSCS
T ss_pred HcCC-cccCcHH
Confidence 344 4689974
No 17
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=52.19 E-value=3.4 Score=30.80 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=9.8
Q ss_pred HHhhhhCCchhhhhhc
Q 029917 153 SQAKARGIPYKKKKKK 168 (185)
Q Consensus 153 ~QAkArgi~y~kkk~k 168 (185)
+.-|.-||+|-+|||+
T Consensus 38 Fl~KGLGIsYgRkkRr 53 (86)
T 3mi9_C 38 FITKALGISYGRKKRR 53 (86)
T ss_dssp HHHTTSCCCSCC----
T ss_pred hcccCCcccccccccc
Confidence 3468899999877664
No 18
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=51.98 E-value=17 Score=26.97 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=45.3
Q ss_pred hhhhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 029917 45 RRDWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRA 124 (185)
Q Consensus 45 rrdwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRA 124 (185)
++.++.|..|+.+. .+..-+..||.+|+.++-..| +..++...+.-|++
T Consensus 28 ~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~ 76 (283)
T 1z19_A 28 MSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSD 76 (283)
T ss_dssp HHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHHH
Confidence 45677888888653 456668899999998864321 23578888999999
Q ss_pred HHHHh--CCCCCCCCcc
Q 029917 125 AYEEN--GGLPETNPFA 139 (185)
Q Consensus 125 afeE~--Gg~pE~NPF~ 139 (185)
+|+-. =+.-+.|||.
T Consensus 77 ~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 77 AFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHCCCCCcCchh
Confidence 98853 1334589975
No 19
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=51.61 E-value=22 Score=23.30 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=36.7
Q ss_pred cccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCCc
Q 029917 62 VALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE---NGGLPETNPF 138 (185)
Q Consensus 62 lsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE---~Gg~pE~NPF 138 (185)
+.|..-+..||.+|+.++-.. ..+..++...+..||++|.- .|. -+.||+
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~--------------------------g~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP~ 98 (118)
T 2kd1_A 46 IKLAKLTSLHMQNYVNSLRDE--------------------------GLKRGTIEKIIKVIRNSLEHAIDLEL-ITKNVA 98 (118)
T ss_dssp SBGGGCCHHHHHHHHHHHHHH--------------------------TCCHHHHHHHHHHHHHHHHHHHHTTS-CSSCTT
T ss_pred CCHHhCCHHHHHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHHHHHHHHHcCC-cccCcc
Confidence 467777899999999876321 12456888999999999874 344 457998
Q ss_pred c
Q 029917 139 A 139 (185)
Q Consensus 139 ~ 139 (185)
.
T Consensus 99 ~ 99 (118)
T 2kd1_A 99 A 99 (118)
T ss_dssp T
T ss_pred c
Confidence 4
No 20
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=49.39 E-value=21 Score=33.07 Aligned_cols=44 Identities=30% Similarity=0.440 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHhCCC---------------------CCCCCc-cchhHHHHHH--HHhHHHhhh
Q 029917 114 SLDALIGRLRAAYEENGGL---------------------PETNPF-ASGAIRIYLR--EVRDSQAKA 157 (185)
Q Consensus 114 SLDALIGRLRAafeE~Gg~---------------------pE~NPF-~araVR~YLR--eVRd~QAkA 157 (185)
+.+...--++.+++.++++ .|.||| |.|+||++|. ++=+.|.+|
T Consensus 311 ~~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrA 378 (572)
T 2wqd_A 311 TEEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRA 378 (572)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHHH
Confidence 3455666677777777664 378996 8999999995 554445443
No 21
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=48.75 E-value=40 Score=22.42 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=38.5
Q ss_pred HHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---
Q 029917 52 GQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE--- 128 (185)
Q Consensus 52 ~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE--- 128 (185)
..+|.+ +.|..-+..||.+|+..+...| +..++..++.-|+++|+-
T Consensus 39 ~~~lg~----~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~ 87 (118)
T 2kj8_A 39 LPIIGG----LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIV 87 (118)
T ss_dssp HHHHTT----SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcC----CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHH
Confidence 455543 4566678899999998753211 345788899999999874
Q ss_pred hCCCCCCCCcc
Q 029917 129 NGGLPETNPFA 139 (185)
Q Consensus 129 ~Gg~pE~NPF~ 139 (185)
.|. -+.||+.
T Consensus 88 ~~~-i~~NP~~ 97 (118)
T 2kj8_A 88 TGR-AKYNPAP 97 (118)
T ss_dssp TTS-CSCCSHH
T ss_pred cCC-cccCcHH
Confidence 344 4689973
No 22
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=48.51 E-value=13 Score=24.24 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=36.6
Q ss_pred cccCCCCccchhhhhhhhcc-CCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCC
Q 029917 62 VALSQCNSNHVLDFLRYLDQ-FGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE---NGGLPETNP 137 (185)
Q Consensus 62 lsl~~cs~~hVleFL~ylDq-fGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE---~Gg~pE~NP 137 (185)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|.- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788999999998743 11 2446888999999999974 354 35689
Q ss_pred cc
Q 029917 138 FA 139 (185)
Q Consensus 138 F~ 139 (185)
+.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 23
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=47.73 E-value=9.3 Score=25.69 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHhC
Q 029917 113 GSLDALIGRLRAAYEENG 130 (185)
Q Consensus 113 GSLDALIGRLRAafeE~G 130 (185)
.+||.+|-|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998765
No 24
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=47.50 E-value=19 Score=33.37 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHhCCC---------------------CCCCCc-cchhHHHHHH
Q 029917 114 SLDALIGRLRAAYEENGGL---------------------PETNPF-ASGAIRIYLR 148 (185)
Q Consensus 114 SLDALIGRLRAafeE~Gg~---------------------pE~NPF-~araVR~YLR 148 (185)
+.+...--++.+++.++++ .|.||| |.|+||++|.
T Consensus 309 ~~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 309 TEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 3455666677778877664 478997 8999999996
No 25
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=42.08 E-value=19 Score=25.61 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 029917 112 WGSLDALIGRLRAAYEENGGL 132 (185)
Q Consensus 112 wGSLDALIGRLRAafeE~Gg~ 132 (185)
-.+||.+|-|||..+++.+..
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhhcCCCC
Confidence 358999999999999987653
No 26
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=39.12 E-value=13 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 029917 115 LDALIGRLRAAYEENGGLPETN 136 (185)
Q Consensus 115 LDALIGRLRAafeE~Gg~pE~N 136 (185)
-|-=|+||++...+||..||-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999988765
No 27
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=39.11 E-value=14 Score=25.47 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.2
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 029917 112 WGSLDALIGRLRAAYEENGGL 132 (185)
Q Consensus 112 wGSLDALIGRLRAafeE~Gg~ 132 (185)
-.+||.+|-|||..+++.++.
T Consensus 67 ~~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 67 PNVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp TTHHHHHHHHHHHHTTTTSCC
T ss_pred cchHHHHHHHHHHHhccccCC
Confidence 358999999999999876443
No 28
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=37.52 E-value=14 Score=25.55 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=17.3
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 029917 112 WGSLDALIGRLRAAYEENGGL 132 (185)
Q Consensus 112 wGSLDALIGRLRAafeE~Gg~ 132 (185)
-.+||.+|-|||..++..|..
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 69 ERSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SSCHHHHHHHHHHHHCSCTTS
T ss_pred cchHHHHHHHHHHHhhcCCCC
Confidence 358999999999999876643
No 29
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=37.10 E-value=16 Score=36.01 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCc-cchhHHHHHH--HHhHHHhhh
Q 029917 114 SLDALIGRLRAAYEENGGLPETNPF-ASGAIRIYLR--EVRDSQAKA 157 (185)
Q Consensus 114 SLDALIGRLRAafeE~Gg~pE~NPF-~araVR~YLR--eVRd~QAkA 157 (185)
+.|.++.++. -.-|.||| |.|++|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~-------~~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVN-------ALHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHH-------SSCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhc-------CCCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 4566655543 13689998 9999999996 566777765
No 30
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=35.69 E-value=26 Score=23.16 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCC
Q 029917 112 WGSLDALIGRLRAAYEENGGLPETNP 137 (185)
Q Consensus 112 wGSLDALIGRLRAafeE~Gg~pE~NP 137 (185)
-|.=..||-||.++.++.|+.++.-|
T Consensus 25 ~G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 25 GGLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp CSSHHHHHHHHHHHHHHSCC------
T ss_pred CCcHHHHHHHHHHHHHhccCCcccCC
Confidence 36667999999999999998877665
No 31
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=34.90 E-value=20 Score=24.54 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHHHHHhCC
Q 029917 112 WGSLDALIGRLRAAYEENGG 131 (185)
Q Consensus 112 wGSLDALIGRLRAafeE~Gg 131 (185)
-.+||.+|.|||..+++.|.
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 69 DRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp THHHHHHHHHHHHHHGGGTG
T ss_pred cccHHHHHHHHHHHhcccCC
Confidence 35899999999999987653
No 32
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=34.81 E-value=18 Score=25.35 Aligned_cols=23 Identities=35% Similarity=0.771 Sum_probs=18.0
Q ss_pred eeecccccccCCCCCCCCCCCch
Q 029917 86 KVHLQGCVFFGQPEPPGPCSCPL 108 (185)
Q Consensus 86 kVH~~~C~ffg~p~ppapC~CPl 108 (185)
.+=..+|.|||.|..-..|.-=+
T Consensus 14 ~lC~ngCGFfGnpaT~nlCSkCy 36 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCSVCY 36 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCHHHH
T ss_pred cchhhCCCCcCChhhcCcCHHHH
Confidence 35567999999999988887433
No 33
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=33.65 E-value=76 Score=20.64 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=35.5
Q ss_pred CCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCC-
Q 029917 60 PPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE---NGGLPET- 135 (185)
Q Consensus 60 PPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE---~Gg~pE~- 135 (185)
.-+.|..-+..||.+||..+-.. -+ .++..+...|+++|+. .|.- +.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~---------------------------~~-~t~~~~~~~l~~i~~~Av~~~~i-~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQ---------------------------KP-ETASRLRGRIESVLDWATVRGYR-EGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHH---------------------------CH-HHHHHHHHHHHHHHHHHHHHTSS-CSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHh---------------------------Ch-HHHHHHHHHHHHHHHHHHHcCCc-CCC
Confidence 45667777899999998753210 02 5788889999999874 4554 56
Q ss_pred CCcc
Q 029917 136 NPFA 139 (185)
Q Consensus 136 NPF~ 139 (185)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9974
No 34
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=32.99 E-value=39 Score=32.92 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCCCCc-cchhHHHHHH--HHhHHHhhhh
Q 029917 133 PETNPF-ASGAIRIYLR--EVRDSQAKAR 158 (185)
Q Consensus 133 pE~NPF-~araVR~YLR--eVRd~QAkAr 158 (185)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 690 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARAI 690 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHHH
Confidence 589996 7899999998 8888888773
No 35
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=32.82 E-value=55 Score=21.23 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=34.2
Q ss_pred ccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCCcc
Q 029917 63 ALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEE---NGGLPETNPFA 139 (185)
Q Consensus 63 sl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE---~Gg~pE~NPF~ 139 (185)
.|..-+..||.+|+.++-.. .+..++..++..||++|+- .| .-+.||+.
T Consensus 47 ~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~~ 98 (116)
T 2kj5_A 47 KVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPAA 98 (116)
T ss_dssp BSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGGG
T ss_pred cHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCchh
Confidence 45566788999998875321 1346788899999999873 34 34689974
No 36
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=31.65 E-value=20 Score=25.71 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.2
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 029917 112 WGSLDALIGRLRAAYEENGGL 132 (185)
Q Consensus 112 wGSLDALIGRLRAafeE~Gg~ 132 (185)
-.+||.+|-|||..+++.+..
T Consensus 81 ~~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 81 VRTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHHCSSTTS
T ss_pred ccHHHHHHHHHHHHHhhcCCC
Confidence 358999999999999876543
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=30.37 E-value=11 Score=32.33 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHhHHHhhhhCCch
Q 029917 146 YLREVRDSQAKARGIPY 162 (185)
Q Consensus 146 YLReVRd~QAkArgi~y 162 (185)
|=.-|.=.+ | -||.|
T Consensus 318 ~~~~~~~~~-~-~~~~~ 332 (358)
T 2pk2_A 318 YHCQLCFLR-S-LGIDY 332 (358)
T ss_dssp -----------------
T ss_pred eecHHHhcc-c-cceee
Confidence 433343334 6 99999
No 38
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=29.88 E-value=1.2e+02 Score=19.88 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=41.6
Q ss_pred hhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHH
Q 029917 48 WNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYE 127 (185)
Q Consensus 48 wntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafe 127 (185)
++.|..||. -+.|..-+..||.+|+.++... .+-.++..++..|+++|+
T Consensus 36 ~~~i~p~~g----~~~l~~It~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~i~~ 84 (112)
T 3lys_A 36 LKYLKTYMP----NVLISEITASSYQRALNKFAET---------------------------HAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp HHHHHHHSS----SCBTTTCCHHHHHHHHHHHHTT---------------------------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHhCCHHHHHHHHHHHHHh---------------------------ccHHHHHHHHHHHHHHHH
Confidence 345555553 3557777899999999876321 234678889999999998
Q ss_pred Hh--CCCCCCCCccc
Q 029917 128 EN--GGLPETNPFAS 140 (185)
Q Consensus 128 E~--Gg~pE~NPF~a 140 (185)
-. -|.-+.||+..
T Consensus 85 ~Av~~g~i~~NP~~~ 99 (112)
T 3lys_A 85 CLIEEGRLQKDFTTR 99 (112)
T ss_dssp HHHHTTSCSSCTTSS
T ss_pred HHHHCCCcccCcccc
Confidence 42 23345899753
No 39
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=29.81 E-value=16 Score=26.49 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=18.7
Q ss_pred eecccccccCCCCCCCCCCCchhh
Q 029917 87 VHLQGCVFFGQPEPPGPCSCPLKQ 110 (185)
Q Consensus 87 VH~~~C~ffg~p~ppapC~CPlRQ 110 (185)
+=..+|.|||.|..-..|.-=+|.
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyrd 41 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWRE 41 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHHH
Confidence 345689999999999999855543
No 40
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=28.68 E-value=43 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCCCc-cchhHHHHHH--HHhHHHhhhh
Q 029917 133 PETNPF-ASGAIRIYLR--EVRDSQAKAR 158 (185)
Q Consensus 133 pE~NPF-~araVR~YLR--eVRd~QAkAr 158 (185)
-|.||| |.|.+|+||. |+=++|.+|-
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 683 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRAV 683 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHHH
Confidence 589996 7899999998 8888888773
No 41
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=28.46 E-value=29 Score=30.80 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=30.0
Q ss_pred CccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcc
Q 029917 68 NSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWG 113 (185)
Q Consensus 68 s~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwG 113 (185)
.++.|-+||..+.-.+.+.|-.....--.....|.||+|.+|++--
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l~ 153 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 153 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHHH
Confidence 3456888998887777777765433211223457788998887643
No 42
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=27.33 E-value=34 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.5
Q ss_pred chhHHHHHHHHhHHHhhhhCCch
Q 029917 140 SGAIRIYLREVRDSQAKARGIPY 162 (185)
Q Consensus 140 araVR~YLReVRd~QAkArgi~y 162 (185)
..++---|+..|...|+.+|||-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677889999999999999984
No 43
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=27.26 E-value=66 Score=24.95 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=39.9
Q ss_pred hhhHHHHHHHhcCCCcccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 029917 47 DWNTFGQYLRNQRPPVALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAY 126 (185)
Q Consensus 47 dwntf~qyL~n~rPPlsl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAaf 126 (185)
.++.|..||.+ +.|..-+..||.+|+.++-..| +..++...+..|+++|
T Consensus 103 ~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 34445555543 3455667889999988754211 3357888899999998
Q ss_pred HHh--CCCCCCCCcc
Q 029917 127 EEN--GGLPETNPFA 139 (185)
Q Consensus 127 eE~--Gg~pE~NPF~ 139 (185)
+-. =+.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 843 2344579974
No 44
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=27.25 E-value=40 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 029917 113 GSLDALIGRLRAAYEENGG 131 (185)
Q Consensus 113 GSLDALIGRLRAafeE~Gg 131 (185)
.+||.+|.|||..+++.|.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4899999999999998765
No 45
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=26.98 E-value=60 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=21.0
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCCcc
Q 029917 111 AWGSLDALIGRLRAAYEEN--GGLPETNPFA 139 (185)
Q Consensus 111 AwGSLDALIGRLRAafeE~--Gg~pE~NPF~ 139 (185)
+..++..++..||++|+-. -|.-+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4568888999999998742 2335689984
No 46
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.09 E-value=27 Score=25.72 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.3
Q ss_pred CCCcccCCCCccchhhhhhhh
Q 029917 59 RPPVALSQCNSNHVLDFLRYL 79 (185)
Q Consensus 59 rPPlsl~~cs~~hVleFL~yl 79 (185)
.||-.|+.=|-.+|.+||+++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999973
No 47
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=25.96 E-value=14 Score=29.14 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=16.7
Q ss_pred ceeeecccccccCCCCCCCCCCCchh----hhcchhHHHHHHHHH
Q 029917 84 KTKVHLQGCVFFGQPEPPGPCSCPLK----QAWGSLDALIGRLRA 124 (185)
Q Consensus 84 kTkVH~~~C~ffg~p~ppapC~CPlR----QAwGSLDALIGRLRA 124 (185)
.-..|...|. -+||.||.. .--|+++.|..-|+.
T Consensus 24 ~~~~He~~C~-------f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 24 EKADHEELCE-------FRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp -------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred cccchhhcCC-------CCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 3446889996 467888864 122899999999986
No 48
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=25.92 E-value=40 Score=26.70 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhCCC
Q 029917 116 DALIGRLRAAYEENGGL 132 (185)
Q Consensus 116 DALIGRLRAafeE~Gg~ 132 (185)
+--+..|+++|+++||.
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 56667999999999974
No 49
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=24.45 E-value=97 Score=21.67 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCCCccchhHHHHHHHHhHHHhhhhCCchhh
Q 029917 120 GRLRAAYEENGGLPETNPFASGAIRIYLREVRDSQAKARGIPYKK 164 (185)
Q Consensus 120 GRLRAafeE~Gg~pE~NPF~araVR~YLReVRd~QAkArgi~y~k 164 (185)
-+--++|++.|-.+ +-||++||+.|= ..+|||++-
T Consensus 14 ~~a~~v~~~lGl~~------s~Ai~~fl~~v~----~~~~iPF~~ 48 (79)
T 4fxe_A 14 ARSYAALEKMGVTP------SEALRLMLEYIA----DNERLPFKQ 48 (79)
T ss_dssp HHHHHHHHHHTCCH------HHHHHHHHHHHH----HHSSCSSCC
T ss_pred HHHHHHHHHhCCCH------HHHHHHHHHHHH----HhCCCCCcc
Confidence 34557888999875 579999999874 447888753
No 50
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=23.56 E-value=40 Score=30.72 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=29.7
Q ss_pred CccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcc
Q 029917 68 NSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWG 113 (185)
Q Consensus 68 s~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwG 113 (185)
.++.|-+||..+.-.+.+.|......--.....|.||+|.+|++.-
T Consensus 268 ~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 268 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEEESCTTCSCCSSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEEecCCccccCCCCCCCceEHHHhhh
Confidence 3456788888887777777765433211223456789999988754
No 51
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=23.02 E-value=64 Score=23.16 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=23.2
Q ss_pred hhhcchhHHHHHHHHHHHHHhCCCCC
Q 029917 109 KQAWGSLDALIGRLRAAYEENGGLPE 134 (185)
Q Consensus 109 RQAwGSLDALIGRLRAafeE~Gg~pE 134 (185)
.-.-||+|.+--+|++|=+|+|..|+
T Consensus 61 ~f~IGSvd~FE~~Le~aQ~el~i~~~ 86 (99)
T 2lna_A 61 WFNIGSVDTFERNLETLQQELGIEGE 86 (99)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTCCTT
T ss_pred EEEeCCHHHHHHHHHHHHHHcCCCcc
Confidence 55669999999999999999999876
No 52
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=22.68 E-value=85 Score=21.07 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=33.2
Q ss_pred ccCCCCccchhhhhhhhccCCceeeecccccccCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCc
Q 029917 63 ALSQCNSNHVLDFLRYLDQFGKTKVHLQGCVFFGQPEPPGPCSCPLKQAWGSLDALIGRLRAAYEEN--GGLPETNPF 138 (185)
Q Consensus 63 sl~~cs~~hVleFL~ylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~--Gg~pE~NPF 138 (185)
.|..-+..||.+||..+-.. .+..++..++..|+++|+-. -|.-+.||+
T Consensus 51 ~l~~It~~~i~~~l~~l~~~---------------------------~~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEKL---------------------------GYLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHTT---------------------------TCHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CHHHCCHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 46666888999998764211 13457888999999998742 233468986
No 53
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=22.63 E-value=14 Score=27.84 Aligned_cols=14 Identities=43% Similarity=1.025 Sum_probs=12.5
Q ss_pred hhhHHHHHHHhcCC
Q 029917 47 DWNTFGQYLRNQRP 60 (185)
Q Consensus 47 dwntf~qyL~n~rP 60 (185)
-|.||.+||..|.|
T Consensus 63 GW~~L~~yL~khdp 76 (97)
T 1v5r_A 63 GWETFAGYLLKHDP 76 (97)
T ss_dssp EEEEHHHHHHHHCH
T ss_pred cHHHHHHHHHHcCc
Confidence 39999999999986
No 54
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=22.55 E-value=21 Score=24.19 Aligned_cols=20 Identities=50% Similarity=1.119 Sum_probs=15.2
Q ss_pred eeecccccccCCCCCCCCCC
Q 029917 86 KVHLQGCVFFGQPEPPGPCS 105 (185)
Q Consensus 86 kVH~~~C~ffg~p~ppapC~ 105 (185)
.--..+|.|||.|..-.-|.
T Consensus 20 lC~~ngCGFfG~p~t~n~CS 39 (49)
T 3oj3_I 20 KCRKAGCVYFGTPENKGFCT 39 (49)
T ss_dssp BCSSTTCSSBCBGGGTTBCH
T ss_pred ccccCCCCCccCcccCCcch
Confidence 33347999999998777775
No 55
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=22.43 E-value=58 Score=21.63 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhHHHhhhhCCch
Q 029917 141 GAIRIYLREVRDSQAKARGIPY 162 (185)
Q Consensus 141 raVR~YLReVRd~QAkArgi~y 162 (185)
.++---|++.|+..|+.++||-
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp 26 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSA 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4566679999999999999984
No 56
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=22.08 E-value=43 Score=22.92 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHhhhhCCch
Q 029917 143 IRIYLREVRDSQAKARGIPY 162 (185)
Q Consensus 143 VR~YLReVRd~QAkArgi~y 162 (185)
+---|++.|+..|+.+|||-
T Consensus 9 l~~~L~~wR~~~A~~~~vp~ 28 (85)
T 2kv2_A 9 CLGELTEVCKSLGKVFGVHY 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHcCCCc
Confidence 44569999999999999984
No 57
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=26.72 E-value=20 Score=24.23 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.9
Q ss_pred CCCccchhHHHHHHH
Q 029917 135 TNPFASGAIRIYLRE 149 (185)
Q Consensus 135 ~NPF~araVR~YLRe 149 (185)
.||..|.++..||+.
T Consensus 8 ~N~~~Aq~f~dyL~s 22 (69)
T 2lep_A 8 ANPRVAQAFVDYMAT 22 (69)
Confidence 799999999999986
No 58
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=21.14 E-value=59 Score=24.87 Aligned_cols=35 Identities=23% Similarity=0.634 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCC------CCC-ccchhHHHHHHHHh
Q 029917 117 ALIGRLRAAYEENGGLPE------TNP-FASGAIRIYLREVR 151 (185)
Q Consensus 117 ALIGRLRAafeE~Gg~pE------~NP-F~araVR~YLReVR 151 (185)
+-|-.||..|++.|...+ .++ -.+.+++.||||.-
T Consensus 53 ~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLp 94 (202)
T 2osa_A 53 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 94 (202)
T ss_dssp HHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCC
Confidence 457889999998764322 123 25889999999864
Done!