BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029918
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 94/137 (68%), Gaps = 9/137 (6%)
Query: 39 ALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVE 96
ALR+V +RV Q+ R R P + R+VAVSKTKP ++ + Y G R FGENYVQE++E
Sbjct: 16 ALRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75
Query: 97 KAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG 151
KA+ +++WHFIG+LQ V L+A VPNL+M+E+VD+ K+A ++N + G
Sbjct: 76 KASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKG 134
Query: 152 -RKPLKVLVQVNTSGEE 167
+PLKV+VQ+NTSGE+
Sbjct: 135 PTEPLKVMVQINTSGED 151
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 9/149 (6%)
Query: 27 AASAATDGVAATALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHR 84
A S + + ALR+V +RV QA R R P + R+VAVSKTKP ++ + Y G R
Sbjct: 4 AGSMSAELGVGCALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQR 63
Query: 85 CFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKI 139
FGENYVQE++EKA+ L +++WHFIG+LQ V L+A VPNL M+E+VD+ K+
Sbjct: 64 TFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKL 122
Query: 140 AGRLNRMVETMGRKP-LKVLVQVNTSGEE 167
A ++N + G LKV+VQ+NTSGEE
Sbjct: 123 ADKVNSSWQRKGSPERLKVMVQINTSGEE 151
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 9/149 (6%)
Query: 27 AASAATDGVAATALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHR 84
A S + + ALR+V +RV QA R P + R+VAVSKTKP ++ + Y G R
Sbjct: 4 AGSMSAELGVGCALRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQR 63
Query: 85 CFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKI 139
FGENYVQE++EKA+ L +++WHFIG+LQ V L+A VPNL ++E+VD+ K+
Sbjct: 64 TFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKL 122
Query: 140 AGRLNRMVETMGRKP-LKVLVQVNTSGEE 167
AG++N + G LKV+VQ+NTSGEE
Sbjct: 123 AGKVNSSWQKKGSPERLKVMVQINTSGEE 151
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 11/149 (7%)
Query: 27 AASAATDGVAATALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHR 84
A S + + ALR+V +RV QA R R P + R+VAVSKTKP ++ + Y G R
Sbjct: 4 AGSMSAELGIGFALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQR 63
Query: 85 CFGENYVQEIVEKAAQLPD------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEK 138
FGENYVQE++EKA+ P +++WHFIG+LQ V L+A VPNL+M+E+VD+ K
Sbjct: 64 TFGENYVQELLEKASN-PQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVK 121
Query: 139 IAGRLNRMVETMGRKP-LKVLVQVNTSGE 166
+A ++N + G LKV+VQ+NTSGE
Sbjct: 122 LADKVNSAWQKKGSPERLKVMVQINTSGE 150
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 61 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKP 120
+ +VAVSK PV + + Y AG R FGENY+QE ++K +PDD++WHFIG+LQS+K K
Sbjct: 24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK 83
Query: 121 LLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE 167
+A V NL +E++D EK A +N E + + PL V +QVNTSGEE
Sbjct: 84 -IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEE 128
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 83/131 (63%), Gaps = 7/131 (5%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA- 98
L + Q + A +++ RP ++++AVSKTKPV I Q Y+AG FGENYVQE VEK
Sbjct: 7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQ 66
Query: 99 --AQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLK 156
AQ LEWHFIG LQSNK K L+A + ++++D +KIA RLN +KPL
Sbjct: 67 YFAQKNIPLEWHFIGPLQSNKTK-LVA--EHFDWMQTLDRKKIADRLNEQ-RPHYKKPLN 122
Query: 157 VLVQVNTSGEE 167
VL+Q+N S E+
Sbjct: 123 VLIQINISDED 133
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
Query: 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVK 119
+I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA LPDD++WHFIG LQ+NK K
Sbjct: 41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 120 PLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRKPLKVLVQVNTSGEE 167
LA VPNL VE++D+ K A +LN R P+ VQ+NTS E+
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHED 149
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 15/142 (10%)
Query: 40 LRSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK 97
L S + + E S DR +++VAVSKTKP +IR +Y+ GHR FGENY+QE+V K
Sbjct: 10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSK 69
Query: 98 AAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR---------- 145
+ +L ++++WHFIG++QSNK K +L V NL +VE+V+N+KI +L +
Sbjct: 70 SEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNN 128
Query: 146 MVETMGRKPLKVLVQVNTSGEE 167
K L +++QVNTSGEE
Sbjct: 129 NNNNNNNKKLNIMIQVNTSGEE 150
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 52 ERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK----AAQLPDD-LE 106
++ R P+ ++++AVSKTKPV I + Y+AG FGENYVQE V K A PD+ +E
Sbjct: 20 QKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIE 79
Query: 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE 166
WHFIG +QSNK + L+A + V ++D KIA RLN + KPL+VL+QVNTSGE
Sbjct: 80 WHFIGPIQSNKSR-LVA--EHFDWVHTIDRTKIAQRLNDQRPS-ELKPLQVLIQVNTSGE 135
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L + Q++ A + +R + ++++AVSKTKP+S I Y+AG FGENYVQE VEK
Sbjct: 7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQ 66
Query: 100 QLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLK 156
+LEWHFIG LQSNK + L+A + ++++D KIA RLN T + PL
Sbjct: 67 YFESQGINLEWHFIGPLQSNKTR-LVA--EHFDWMQTLDRAKIADRLNEQRPT-NKAPLN 122
Query: 157 VLVQVNTSGEE 167
VL+Q+N S EE
Sbjct: 123 VLIQINISDEE 133
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEI 94
+ +L ++I+ V A +S+ R R+VAVSKTK +I Y R FGENYVQE+
Sbjct: 5 IVQKSLFNIIEAVADAV-TASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQEL 63
Query: 95 VEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG 151
EK+ L D+ WHFIG +QSNK+ + P L VE+V+ EK A ++ G
Sbjct: 64 EEKSDVLASKCLDIRWHFIGQVQSNKIGK-ICNSPGLWCVETVETEKHARIFDKEWSKHG 122
Query: 152 R--KPLKVLVQVNTSGEE 167
PL+VLVQVNTSGE+
Sbjct: 123 ANLSPLRVLVQVNTSGED 140
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 79/129 (61%), Gaps = 9/129 (6%)
Query: 43 VIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP 102
+ ++ A ++ R ++++AVSKTKPV I + +AG R FGENYVQE V+K
Sbjct: 11 ITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFA 70
Query: 103 DD-----LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKV 157
+ LEWHFIG LQSNK + L+A + V ++D EKIA RL+ + PL+V
Sbjct: 71 EHHPQLALEWHFIGPLQSNKTR-LVA--EHFDWVHTIDREKIALRLSEQ-RPVNMPPLQV 126
Query: 158 LVQVNTSGE 166
L+QVNTSGE
Sbjct: 127 LIQVNTSGE 135
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 5/125 (4%)
Query: 43 VIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP 102
V R+ +AA+ + R P + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L
Sbjct: 11 VAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELA 70
Query: 103 D-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQV 161
D L WHFIG +QSNK +P+ + V SVD KIA RL+ G PL V +QV
Sbjct: 71 DLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQV 126
Query: 162 NTSGE 166
N SGE
Sbjct: 127 NVSGE 131
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L V ++ AA R R P+ I ++AVSKTKP S I + +AG R FGENYVQE V+K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 100 QLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRK 153
+ LEWHFIG LQSNK + L+A + ++D +IA RLN R E
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSR-LVA--EHFDWCHTIDRLRIATRLNDQRPAEL---P 121
Query: 154 PLKVLVQVNTSGE 166
PL VL+Q+N S E
Sbjct: 122 PLNVLIQINISDE 134
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L V ++ AA R R P+ I ++AVSKTKP S I + +AG R FGENYVQE V+K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 100 QLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRK 153
+ LEWHFIG LQSNK + L+A + ++D +IA RLN R E
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSR-LVA--EHFDWCHTIDRLRIATRLNDQRPAEL---P 121
Query: 154 PLKVLVQVNTSGE 166
PL VL+Q+N S E
Sbjct: 122 PLNVLIQINISDE 134
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L V ++ AA R R P+ I ++AVSKTKP S I + +AG R FGENYVQE V+K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 100 QLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRK 153
+ LEWHFIG LQSNK + L+A + ++D +IA RLN R E
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSR-LVA--EHFDWCHTIDRLRIATRLNDQRPAEL---P 121
Query: 154 PLKVLVQVNTSGE 166
PL VL+Q+N S E
Sbjct: 122 PLNVLIQINISDE 134
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 17/139 (12%)
Query: 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIV 95
A L V++R+ +A ER+ R + +++ SKT P VIR+ Y G + +GEN VQE +
Sbjct: 3 ACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFL 62
Query: 96 EKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL------NRMVE 148
+K L D DLEWHFIG LQ+NKVK L+ V ++ S+D + +A + N +V+
Sbjct: 63 KKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 149 TMGRKPLKVLVQVNTSGEE 167
VL++VN GEE
Sbjct: 120 D-------VLIEVNVGGEE 131
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 10/115 (8%)
Query: 58 PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQS 115
P +R+VAV+KTK ++ I Y AG R F E+ +QE + K L + D+ WHFIG LQS
Sbjct: 15 PPSVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQS 74
Query: 116 NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKP-----LKVLVQVNTSG 165
NK + + V N + SVDN IA +L+R+ E + + P +K+L N SG
Sbjct: 75 NKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFPQGLLQIKLLPDENKSG 126
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 52 ERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHF 109
++++ P +I+I+AVSK + + I+ +G FGENYVQE ++K +L ++ WHF
Sbjct: 20 KKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHF 79
Query: 110 IGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE 166
IG +QSNK K + N +++D EKIA LN+ E P+ VL+Q+N S E
Sbjct: 80 IGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKSF-PMNVLMQINISNE 132
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
+ ++I ++ +A SR ++IVAVSK I+ Y R FGEN VQ++ K
Sbjct: 8 IDALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMH 66
Query: 100 QLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVL 158
L LEWH IG+LQ NK+ LL+ P A++ S+D+ K+A ++ + E +G L L
Sbjct: 67 SLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNAL 123
Query: 159 VQVNTSGEE 167
+QVN++ EE
Sbjct: 124 LQVNSAYEE 132
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Query: 61 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEI---VEKAAQLPDDLEWHFIGNLQSNK 117
++IVAVSK I+ Y R FGEN VQ++ + LP LEWH IG+LQ NK
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLP--LEWHMIGSLQENK 85
Query: 118 VKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE 167
+ LL+ P A++ S+D+ K+A ++ + E +G L L+QVN++ EE
Sbjct: 86 INALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEE 132
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
LR + +R+++A RS R D + ++AV+K ++ +AG C GEN E++ K
Sbjct: 7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQE 66
Query: 100 QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLV 159
+ + EWHFIG+LQS K K + V +++ + S+D +A + +E ++ V
Sbjct: 67 LMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFV 119
Query: 160 QVNTSGE 166
QVNTS E
Sbjct: 120 QVNTSLE 126
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNK 117
+I I+AVSK + ++ I + +G FGENY+QE + K L ++ WHFIG +QSNK
Sbjct: 3 KITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNK 62
Query: 118 VKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI 173
K + N + ++VD EKIA LN+ P+ VL+Q+N E +I
Sbjct: 63 TKKI---AQNFSWCQTVDREKIAVLLNKF-RPKNLPPINVLIQINNLKELQNNRYI 114
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
++ + Q++ +++ +I+++AVSK + V+ I++ G FGENYVQE +
Sbjct: 8 IKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQE-SQPKI 66
Query: 100 QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLV 159
+L +++EWH+IG +QSNK + N + ++ N+K A LN+ L L+
Sbjct: 67 KLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKY-RPYSLPKLNTLI 122
Query: 160 QVN 162
Q+N
Sbjct: 123 QIN 125
>sp|O24748|Y2153_CORGL UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl2153 PE=3 SV=2
Length = 221
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 46 RVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDL 105
R+ +RP +R++ V+K PV I+ + E G GEN QE KA +LP D+
Sbjct: 4 RIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP-DM 62
Query: 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG 165
++H IG +QS K + A V SVD+EKIA E +GR L + + +
Sbjct: 63 DFHMIGQIQSKKANSIARWA---AAVHSVDSEKIA-------EALGRGVALALDRGDRTS 112
Query: 166 EEYGECFIKCS 176
+E CFI+ S
Sbjct: 113 DEL-PCFIQLS 122
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 42 SVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQ 100
+V+ + +A ++ R +R+VAV+K + IR QV G EN QE+ +K A
Sbjct: 5 AVLAGIREAEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQELRDKVAG 64
Query: 101 LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQ 160
LP EWHFIG LQ NK+K L GV +V S++ A + G+ P +L +
Sbjct: 65 LPG-AEWHFIGPLQRNKIK-YLRGV---TLVHSIEEPWQAQAIADAAAEWGQAPAVLLQR 119
Query: 161 VNTSGEEYG 169
N G+++G
Sbjct: 120 HNGEGQKHG 128
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA 98
AL +V R+ A++ + R I ++ +SK P + + + G R GE+ QE KA
Sbjct: 18 ALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKA 77
Query: 99 AQLPD----------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVE 148
A+ + + WH +G +Q NKV+ L ++S+ R
Sbjct: 78 AEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAAL 137
Query: 149 TMGRK--PLKVLVQVNTSGE 166
GR+ PL+V VQ++ G+
Sbjct: 138 AGGRREQPLQVYVQISLDGD 157
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA 98
AL ++ R+ AAE + R I ++ ++K P + + ++ G R GE+ QE K
Sbjct: 18 ALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEASAKM 77
Query: 99 AQL-----------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV 147
A+L + WH +G +Q NK L SVD+ ++ L+R V
Sbjct: 78 AELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAV 134
Query: 148 -----ETMGRKPLKVLVQVNTSGE 166
E + L+V VQV+ G+
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGD 158
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA 98
AL ++ R+ AAE + R I ++ ++K P + + ++ G R GE+ QE K
Sbjct: 18 ALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEASAKM 77
Query: 99 AQL-----------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV 147
A+L + WH +G +Q NK L SVD+ ++ L+R V
Sbjct: 78 AELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAV 134
Query: 148 -----ETMGRKPLKVLVQVNTSGE 166
E + L+V VQV+ G+
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGD 158
>sp|A5CRU0|Y1747_CLAM3 UPF0042 nucleotide-binding protein CMM_1747 OS=Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
GN=CMM_1747 PE=3 SV=1
Length = 291
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 103 DDLEWHFIGNLQSNKVKPL--LAG-----VPNLAMVESVDNEKIAGRLNRMVETMGRKP- 154
+DL W+ + NL +KPL LAG +P +A V V L +++T G P
Sbjct: 29 EDLGWYVVDNLPPQMLKPLVELAGRAGTSLPKIAAVVDVRGGDFFSELRDILQTFGTGPR 88
Query: 155 LKVL 158
L+VL
Sbjct: 89 LRVL 92
>sp|B0REJ6|Y1991_CLAMS UPF0042 nucleotide-binding protein CMS1991 OS=Clavibacter
michiganensis subsp. sepedonicus (strain ATCC 33113 /
JCM 9667) GN=CMS1991 PE=3 SV=1
Length = 295
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 103 DDLEWHFIGNLQSNKVKPL--LAG-----VPNLAMVESVDNEKIAGRLNRMVETMGRKP- 154
+DL W+ + NL +KPL LAG +P +A V V L ++ T G P
Sbjct: 33 EDLGWYVVDNLPPQMLKPLVELAGRAGTSLPKIAAVVDVRGGDFFSELRDILHTFGTGPR 92
Query: 155 LKVL 158
L+VL
Sbjct: 93 LRVL 96
>sp|Q6AF48|Y1149_LEIXX UPF0042 nucleotide-binding protein Lxx11490 OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=Lxx11490 PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 103 DDLEWHFIGNLQSNKVKPLL-------AGVPNLAMVESVDNEKIAGRLNRMVETMGRKPL 155
+DL+W+ + NL ++PL+ +G+P +A V V L M++++ R+
Sbjct: 33 EDLDWYVVDNLPPQMLRPLIELANRAESGLPRIAAVVDVRGRNFFADLQEMIQSL-REGT 91
Query: 156 KVLV 159
KV V
Sbjct: 92 KVRV 95
>sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo
sapiens GN=ABTB2 PE=2 SV=1
Length = 839
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAG 124
+ +K SVI+Q+ C+G + + I E LP L+ HF+ N + + V L+ G
Sbjct: 609 LKTSKNDSVIQQLATIFTHCYGSSPIPSIPEIRKTLPARLDPHFLNNKEMSDVTFLVEG 667
>sp|Q8NQX9|SYE_CORGL Glutamate--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=gltX PE=3 SV=2
Length = 493
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR-MVETMGRKPLKVL--VQVNTSGE 166
NL+ V+PL AG+ L VE I LN+ ++E +G KP +++ SGE
Sbjct: 401 NLKETAVEPLNAGIAALEAVEEWTTPNIEAALNKALIEDLGLKPRVAFGALRIGISGE 458
>sp|A4QDQ6|SYE_CORGB Glutamate--tRNA ligase OS=Corynebacterium glutamicum (strain R)
GN=gltX PE=3 SV=1
Length = 496
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR-MVETMGRKPLKVL--VQVNTSGE 166
NL+ V+PL AG+ L VE I LN+ ++E +G KP +++ SGE
Sbjct: 404 NLKETAVEPLNAGIAALEAVEEWTTPNIEAALNKALIEDLGLKPRVAFGALRIGISGE 461
>sp|A1VZK1|MURA_CAMJJ UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Campylobacter
jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
GN=murA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 17 INEQVEAET-MAASAAT------DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT 69
I +++EA T + A A T D V AT L +V+ ++HQ + D I ++ +
Sbjct: 230 IPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLITEDSITLLPAKEI 289
Query: 70 KPVSVIRQVY 79
KPV ++ Y
Sbjct: 290 KPVEIMTSEY 299
>sp|Q9PP65|MURA_CAMJE UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Campylobacter
jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
GN=murA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 17 INEQVEAET-MAASAAT------DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT 69
I +++EA T + A A T D V AT L +V+ ++HQ + D I ++ +
Sbjct: 230 IPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLITEDSITLLPAKEI 289
Query: 70 KPVSVIRQVY 79
KPV ++ Y
Sbjct: 290 KPVEIMTSEY 299
>sp|A8FLR7|MURA_CAMJ8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Campylobacter
jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC
11828) GN=murA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 17 INEQVEAET-MAASAAT------DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT 69
I +++EA T + A A T D V AT L +V+ ++HQ + D I ++ +
Sbjct: 230 IPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLIAEDSITLLPAKEI 289
Query: 70 KPVSVIRQVY 79
KPV ++ Y
Sbjct: 290 KPVEIMTSEY 299
>sp|Q5HUT8|MURA_CAMJR UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Campylobacter
jejuni (strain RM1221) GN=murA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 17 INEQVEAET-MAASAAT------DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT 69
I +++EA T + A A T D V AT L +V+ ++HQ + D I ++ +
Sbjct: 230 IPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLIAEDSITLLPAKEI 289
Query: 70 KPVSVIRQVY 79
KPV ++ Y
Sbjct: 290 KPVEIMTSEY 299
>sp|Q9K6I0|MURA1_BACHD UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=murA1 PE=3 SV=1
Length = 440
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 17 INEQVEAETMAASAAT-------DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT 69
I++++EA T +AA +G A LR +I ++H+ ++ + IR++ +
Sbjct: 231 ISDRIEAGTFMVAAAITGGDVFIEGAVAEHLRPLIAKMHEMGVKTIEEDNGIRVIGPDEL 290
Query: 70 KPVSV 74
KPV +
Sbjct: 291 KPVDI 295
>sp|O08764|ABTB2_RAT Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Rattus
norvegicus GN=Abtb2 PE=2 SV=1
Length = 1009
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAG 124
+ +K SV++Q+ C+G + + I E LP L+ HF+ N + + V L+ G
Sbjct: 793 LKTSKNDSVLQQLATIFTHCYGTSPIPSIPEIRKTLPARLDPHFLNNKEMSDVTFLVEG 851
>sp|P36944|RBSR_BACSU Ribose operon repressor OS=Bacillus subtilis (strain 168) GN=rbsR
PE=4 SV=2
Length = 326
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 24 ETMAASAATDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT-------KPVSVIR 76
E A+ ATDGV A+ +H+A R P+ I+I+ P+S I+
Sbjct: 223 ELFASYPATDGVIASNDIQAAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIK 282
Query: 77 Q-VYEAGHRC----FGENYVQEIVEKAAQLP 102
Q Y+ G G Q + E A Q+P
Sbjct: 283 QPAYDMGKEAAKLLLGIIKKQPLAETAIQMP 313
>sp|Q7TQI7|ABTB2_MOUSE Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Mus
musculus GN=Abtb2 PE=2 SV=1
Length = 1024
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAG 124
+ +K SV++Q+ C+G + + I E LP L+ HF+ N + + V L+ G
Sbjct: 794 LKTSKNDSVLQQLATIFTHCYGTSPIPSIPEIRKTLPARLDPHFLNNKEMSDVTFLVEG 852
>sp|Q8N3K9|CMYA5_HUMAN Cardiomyopathy-associated protein 5 OS=Homo sapiens GN=CMYA5 PE=1
SV=3
Length = 4069
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 50 AAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109
+A + S PP RI ++ +P S++ V +G+ CF E ++I AA + F
Sbjct: 1002 SASQVSIPPFRISETEKNELEPDSLLTAVSASGYSCFSEADEEDIGSTAAT---PVSEQF 1058
Query: 110 IGNL-QSNKVKPLLAGVPNLAMVESVDNEKIA 140
+ Q + PL++ + +L++ S D + A
Sbjct: 1059 SSSQKQKAETFPLMSPLEDLSLPPSTDKSEKA 1090
>sp|A0Q3B0|SYI_CLONN Isoleucine--tRNA ligase OS=Clostridium novyi (strain NT) GN=ileS
PE=3 SV=1
Length = 1038
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 80 EAGHR-CFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
E GHR C G ++E+ EK +PDD+E H KP + GV
Sbjct: 462 ECGHRECIGS--IEELKEKGINVPDDIELH----------KPYIDGV 496
>sp|A5F6Y1|PYRF_VIBC3 Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=pyrF PE=3 SV=1
Length = 231
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V K P + +V + FG ++V+E+ ++ + DL++H I N S VK
Sbjct: 22 VDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGE 166
+ V + E++ ++E G+ +PL + V V TS E
Sbjct: 82 VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSME 123
>sp|C3LNL5|PYRF_VIBCM Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1
(strain M66-2) GN=pyrF PE=3 SV=1
Length = 231
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V K P + +V + FG ++V+E+ ++ + DL++H I N S VK
Sbjct: 22 VDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGE 166
+ V + E++ ++E G+ +PL + V V TS E
Sbjct: 82 VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSME 123
>sp|Q9KQT7|PYRF_VIBCH Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=pyrF PE=1
SV=1
Length = 231
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V K P + +V + FG ++V+E+ ++ + DL++H I N S VK
Sbjct: 22 VDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGE 166
+ V + E++ ++E G+ +PL + V V TS E
Sbjct: 82 VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSME 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,577,466
Number of Sequences: 539616
Number of extensions: 2201815
Number of successful extensions: 9005
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 8920
Number of HSP's gapped (non-prelim): 69
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)