Query 029918
Match_columns 185
No_of_seqs 166 out of 1104
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r79_A Uncharacterized protein 100.0 2.1E-43 7.2E-48 300.8 12.7 147 35-185 5-166 (244)
2 3sy1_A UPF0001 protein YGGS; e 100.0 2E-43 7E-48 300.0 11.6 147 35-185 4-166 (245)
3 1ct5_A Protein (yeast hypothet 100.0 6.8E-41 2.3E-45 285.3 14.8 149 33-185 11-181 (256)
4 3cpg_A Uncharacterized protein 100.0 3.7E-29 1.3E-33 213.7 15.7 147 35-185 24-203 (282)
5 3kw3_A Alanine racemase; niaid 99.7 3.7E-17 1.3E-21 145.9 11.1 135 33-185 27-178 (376)
6 3e5p_A Alanine racemase; ALR, 99.7 5E-16 1.7E-20 138.2 12.0 135 33-185 15-168 (371)
7 1rcq_A Catabolic alanine racem 99.7 2.8E-16 9.7E-21 136.7 9.5 130 33-185 10-157 (357)
8 1xfc_A Alanine racemase; alpha 99.6 1.1E-15 3.9E-20 134.3 13.2 134 33-185 18-171 (384)
9 1vfs_A Alanine racemase; TIM-b 99.6 6.7E-16 2.3E-20 136.1 11.1 134 33-185 14-167 (386)
10 2rjg_A Alanine racemase; alpha 99.6 7.7E-16 2.6E-20 136.0 10.7 131 33-185 30-178 (379)
11 4a3q_A Alanine racemase 1; iso 99.6 9.1E-16 3.1E-20 137.2 11.1 134 33-185 15-167 (382)
12 3co8_A Alanine racemase; prote 99.6 1.2E-15 4E-20 134.5 11.5 131 33-185 16-166 (380)
13 4ecl_A Serine racemase, vantg; 99.6 2.8E-15 9.5E-20 133.2 12.2 131 33-185 13-159 (374)
14 2vd8_A Alanine racemase; pyrid 99.6 7.4E-15 2.5E-19 129.8 12.3 133 33-185 18-169 (391)
15 3hur_A Alanine racemase; struc 99.6 1.7E-15 5.8E-20 136.3 7.5 130 33-185 16-164 (395)
16 2dy3_A Alanine racemase; alpha 99.6 6.5E-15 2.2E-19 128.1 10.0 131 33-185 10-157 (361)
17 3mub_A Alanine racemase; alpha 99.6 1.4E-14 4.7E-19 128.7 10.8 133 33-185 15-164 (367)
18 3gwq_A D-serine deaminase; str 99.5 1.3E-14 4.4E-19 130.7 10.0 138 33-185 53-209 (426)
19 1bd0_A Alanine racemase; isome 99.5 5E-14 1.7E-18 124.7 11.7 132 33-185 14-165 (388)
20 1twi_A Diaminopimelate decarbo 99.5 3.5E-13 1.2E-17 119.8 11.9 144 33-185 37-209 (434)
21 2p3e_A Diaminopimelate decarbo 99.5 4.6E-13 1.6E-17 118.4 12.3 136 33-185 41-203 (420)
22 3llx_A Predicted amino acid al 99.4 1.1E-12 3.8E-17 115.3 10.6 136 33-185 21-171 (376)
23 2j66_A BTRK, decarboxylase; bu 99.3 8.9E-12 3.1E-16 110.6 12.0 136 33-185 24-186 (428)
24 3anu_A D-serine dehydratase; P 99.3 3.6E-12 1.2E-16 110.9 9.2 139 33-185 19-175 (376)
25 2qgh_A Diaminopimelate decarbo 99.3 2.5E-11 8.6E-16 108.1 12.4 137 33-185 40-204 (425)
26 2o0t_A Diaminopimelate decarbo 99.1 1.9E-10 6.6E-15 103.9 11.0 136 33-185 49-214 (467)
27 3vab_A Diaminopimelate decarbo 98.2 1.4E-05 4.6E-10 72.1 12.8 120 60-185 74-220 (443)
28 3n2b_A Diaminopimelate decarbo 98.2 9E-06 3.1E-10 73.3 11.1 138 33-185 59-223 (441)
29 2nva_A Arginine decarboxylase, 97.9 6.8E-05 2.3E-09 65.1 11.3 132 33-185 24-175 (372)
30 2plj_A Lysine/ornithine decarb 97.6 0.00019 6.6E-09 63.9 8.8 132 33-185 62-213 (419)
31 2yxx_A Diaminopimelate decarbo 97.1 0.0031 1E-07 54.9 10.4 135 33-185 20-178 (386)
32 7odc_A Protein (ornithine deca 97.1 0.0042 1.4E-07 55.5 11.0 132 33-185 45-196 (424)
33 3n29_A Carboxynorspermidine de 96.9 0.004 1.4E-07 55.8 9.2 131 33-184 51-200 (418)
34 3nzq_A ADC, biosynthetic argin 96.6 0.03 1E-06 53.6 13.7 151 33-185 93-271 (666)
35 3nzp_A Arginine decarboxylase; 96.4 0.077 2.6E-06 50.2 14.6 148 33-185 52-232 (619)
36 3mt1_A Putative carboxynorsper 96.1 0.029 1E-06 48.8 9.7 131 33-184 11-160 (365)
37 3n2o_A ADC, biosynthetic argin 96.0 0.065 2.2E-06 51.1 12.1 151 33-185 71-254 (648)
38 1f3t_A ODC, ornithine decarbox 95.4 0.11 3.9E-06 45.8 10.4 131 33-185 45-196 (425)
39 3btn_A Antizyme inhibitor 1; T 94.3 0.26 8.8E-06 44.1 9.9 130 33-185 45-196 (448)
40 2oo0_A ODC, ornithine decarbox 94.1 0.51 1.7E-05 42.6 11.6 131 33-185 55-206 (471)
41 1knw_A Diaminopimelate decarbo 91.2 0.95 3.2E-05 39.9 9.0 113 62-185 48-190 (425)
42 1y8q_A Ubiquitin-like 1 activa 64.1 23 0.00079 30.4 7.7 87 60-151 38-150 (346)
43 1zud_1 Adenylyltransferase THI 46.9 31 0.0011 28.0 5.4 64 85-151 78-143 (251)
44 1jw9_B Molybdopterin biosynthe 37.8 58 0.002 26.3 5.7 67 82-151 78-146 (249)
45 3hdg_A Uncharacterized protein 36.9 28 0.00095 23.8 3.1 28 59-86 78-105 (137)
46 3hdv_A Response regulator; PSI 36.6 47 0.0016 22.5 4.3 28 59-86 80-107 (136)
47 2qvg_A Two component response 36.1 40 0.0014 23.1 3.9 28 59-86 88-115 (143)
48 1dbw_A Transcriptional regulat 35.7 31 0.0011 23.2 3.2 27 60-86 75-101 (126)
49 3kto_A Response regulator rece 35.1 32 0.0011 23.6 3.2 28 59-86 79-106 (136)
50 4e7p_A Response regulator; DNA 33.7 41 0.0014 23.5 3.7 41 59-99 93-135 (150)
51 1tt5_A APPBP1, amyloid protein 32.7 58 0.002 29.8 5.4 79 70-151 67-149 (531)
52 3eod_A Protein HNR; response r 32.6 36 0.0012 22.9 3.1 27 60-86 79-105 (130)
53 1k66_A Phytochrome response re 32.4 54 0.0018 22.3 4.0 28 59-86 91-118 (149)
54 1tmy_A CHEY protein, TMY; chem 31.7 30 0.001 22.9 2.5 27 60-86 75-101 (120)
55 3b2n_A Uncharacterized protein 31.5 49 0.0017 22.6 3.7 40 60-99 77-118 (133)
56 3jte_A Response regulator rece 31.2 36 0.0012 23.4 3.0 27 60-86 77-103 (143)
57 3eul_A Possible nitrate/nitrit 31.2 48 0.0016 23.1 3.7 28 59-86 88-115 (152)
58 3crn_A Response regulator rece 30.5 37 0.0013 23.2 2.9 27 60-86 75-101 (132)
59 1id3_B Histone H4; nucleosome 29.5 1.2E+02 0.004 21.9 5.6 41 36-87 58-99 (102)
60 3kht_A Response regulator; PSI 29.3 59 0.002 22.3 3.9 28 59-86 80-107 (144)
61 2pl1_A Transcriptional regulat 29.2 47 0.0016 21.9 3.2 27 60-86 72-98 (121)
62 1srr_A SPO0F, sporulation resp 29.2 41 0.0014 22.4 2.9 27 60-86 75-101 (124)
63 1zgz_A Torcad operon transcrip 28.7 74 0.0025 20.9 4.2 27 60-86 73-99 (122)
64 3cnb_A DNA-binding response re 28.7 77 0.0026 21.4 4.3 28 59-86 83-110 (143)
65 3cfy_A Putative LUXO repressor 28.6 57 0.002 22.5 3.7 27 60-86 76-102 (137)
66 2qxy_A Response regulator; reg 27.3 45 0.0016 22.8 2.9 27 60-86 75-101 (142)
67 2pln_A HP1043, response regula 27.1 69 0.0023 21.7 3.8 27 60-86 86-112 (137)
68 2zay_A Response regulator rece 26.8 68 0.0023 22.0 3.8 28 59-86 81-108 (147)
69 2ly8_A Budding yeast chaperone 26.3 1.8E+02 0.0062 21.9 6.3 42 36-88 77-119 (121)
70 3gl9_A Response regulator; bet 26.2 80 0.0027 21.2 4.0 28 59-86 75-102 (122)
71 3cz5_A Two-component response 25.9 41 0.0014 23.5 2.5 27 60-86 79-105 (153)
72 1tzy_D Histone H4-VI; histone- 25.4 1.5E+02 0.0051 21.2 5.5 43 35-88 58-101 (103)
73 3lua_A Response regulator rece 25.2 64 0.0022 22.0 3.4 28 59-86 80-107 (140)
74 3rqi_A Response regulator prot 25.2 48 0.0016 24.4 2.9 39 60-98 79-119 (184)
75 1k68_A Phytochrome response re 24.9 48 0.0017 22.2 2.6 28 59-86 84-111 (140)
76 2yfw_B Histone H4, H4; cell cy 24.7 1.4E+02 0.0048 21.3 5.2 42 36-88 59-101 (103)
77 1jbe_A Chemotaxis protein CHEY 24.4 91 0.0031 20.7 4.0 27 60-86 79-105 (128)
78 2r25_B Osmosensing histidine p 24.3 71 0.0024 21.8 3.5 27 60-86 81-107 (133)
79 2hue_C Histone H4; mini beta s 23.9 99 0.0034 21.3 4.1 42 36-88 40-82 (84)
80 3f6c_A Positive transcription 23.2 40 0.0014 22.8 1.9 27 60-86 74-100 (134)
81 3snk_A Response regulator CHEY 23.1 54 0.0018 22.3 2.6 40 60-99 87-128 (135)
82 3to5_A CHEY homolog; alpha(5)b 22.6 90 0.0031 22.8 3.9 28 59-86 86-113 (134)
83 1y8q_B Anthracycline-, ubiquit 22.3 2.4E+02 0.0081 26.7 7.6 67 82-151 64-133 (640)
84 4dad_A Putative pilus assembly 22.2 44 0.0015 23.1 2.0 27 60-86 95-121 (146)
85 2qzj_A Two-component response 22.1 95 0.0032 21.3 3.8 27 60-86 75-101 (136)
86 3hzh_A Chemotaxis response reg 22.0 54 0.0019 23.2 2.5 27 60-86 111-137 (157)
87 1dz3_A Stage 0 sporulation pro 22.0 94 0.0032 20.8 3.7 27 60-86 77-103 (130)
88 1zh2_A KDP operon transcriptio 21.7 72 0.0025 20.8 3.0 27 60-86 72-98 (121)
89 3h1g_A Chemotaxis protein CHEY 21.5 1.1E+02 0.0037 20.6 4.0 27 60-86 81-107 (129)
90 1a04_A Nitrate/nitrite respons 21.4 84 0.0029 23.4 3.6 27 60-86 79-105 (215)
91 3gt7_A Sensor protein; structu 21.2 78 0.0027 22.2 3.2 28 59-86 80-107 (154)
92 1i3c_A Response regulator RCP1 20.8 79 0.0027 22.0 3.2 27 60-86 91-117 (149)
93 3sdo_A Nitrilotriacetate monoo 20.8 75 0.0026 28.6 3.7 28 39-66 245-272 (453)
94 1p6q_A CHEY2; chemotaxis, sign 20.7 1.5E+02 0.0052 19.5 4.6 28 59-86 80-107 (129)
95 3heb_A Response regulator rece 20.5 88 0.003 21.7 3.4 28 59-86 88-115 (152)
96 1xhf_A DYE resistance, aerobic 20.3 1.1E+02 0.0038 20.1 3.7 27 60-86 74-100 (123)
No 1
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.1e-43 Score=300.77 Aligned_cols=147 Identities=39% Similarity=0.430 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHHcCCcccccccHHHHHHHHhcCC---CCceEEEEe
Q 029918 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP---DDLEWHFIG 111 (185)
Q Consensus 35 ~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~~G~r~FGENrvQEl~~K~~~L~---~~i~WHfIG 111 (185)
.|.+||+.|+++|+++|.++||+|++|+|+||||++|++.|++++++|+++|||||+||+.+|.+.++ ++|.|||||
T Consensus 5 ~i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG 84 (244)
T 3r79_A 5 EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIG 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecC
Confidence 58899999999999999999999999999999999999999999999999999999999999998875 379999999
Q ss_pred cccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------cCCccc
Q 029918 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------KCSWSH 179 (185)
Q Consensus 112 ~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------~~~~l~ 179 (185)
+||+||+++++ +.+++||||||+++|++|++.+.+.+ ++++|+|||||++|.+|+|+. .||+|+
T Consensus 85 ~lq~nk~~~~v---~~~~~i~sVds~~~a~~L~~~a~~~g-~~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~~l~~L~ 160 (244)
T 3r79_A 85 PLQSNKAADAV---ALFDVVESIDREKIARALSEECARQG-RSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLP 160 (244)
T ss_dssp CCCGGGHHHHH---HHCSEEEEECSHHHHHHHHHHHHHHT-CCCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHHHTSCCC
T ss_pred CCCHHHHHHHH---HHCCEEEeeCCHHHHHHHHHHHHHcC-CCceEEEEEECCCCcCCCCCCHHHHHHHHHHHHcCCCCE
Confidence 99999999999 67899999999999999999998775 689999999999999999973 599999
Q ss_pred ccccCC
Q 029918 180 SCLLMI 185 (185)
Q Consensus 180 l~g~m~ 185 (185)
+.||||
T Consensus 161 l~GlmT 166 (244)
T 3r79_A 161 VEGLMC 166 (244)
T ss_dssp CCEEEC
T ss_pred EEEEEe
Confidence 999997
No 2
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=2e-43 Score=300.04 Aligned_cols=147 Identities=37% Similarity=0.500 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC----CceEEEE
Q 029918 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFI 110 (185)
Q Consensus 35 ~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~~G~r~FGENrvQEl~~K~~~L~~----~i~WHfI 110 (185)
.|.+||..|+++|.++|.++||+|++|+|+||||++|++.|++++++|+++|||||+||+.+|.+.+++ +|.||||
T Consensus 4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~i 83 (245)
T 3sy1_A 4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFA 83 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeec
Confidence 588999999999999999999999999999999999999999999999999999999999999988753 7999999
Q ss_pred ecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------cCCcc
Q 029918 111 GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------KCSWS 178 (185)
Q Consensus 111 G~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------~~~~l 178 (185)
|+||+||+++++ +.+++||||||+++|++|++.+.+.+ ++++|+||||+++|.+|+|+. .||+|
T Consensus 84 G~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~~~~-~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~~~~~l 159 (245)
T 3sy1_A 84 GPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRPAEL-PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRL 159 (245)
T ss_dssp SCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSCTTS-CCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHTTCTTE
T ss_pred CCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHHHcC-CCceEEEEEECCCCcCCcCCCHHHHHHHHHHHHcCCCC
Confidence 999999999998 67999999999999999999987665 689999999999999999973 59999
Q ss_pred cccccCC
Q 029918 179 HSCLLMI 185 (185)
Q Consensus 179 ~l~g~m~ 185 (185)
++.||||
T Consensus 160 ~l~Glmt 166 (245)
T 3sy1_A 160 RLRGLSA 166 (245)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 9999997
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=6.8e-41 Score=285.28 Aligned_cols=149 Identities=41% Similarity=0.606 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCC--CCCeEEEEeecCCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCCceEEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRP--PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~--p~~V~LvAVSKt~p~e~I~~a~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfI 110 (185)
...|.+||..|+++|..+|.++||+ |.+|+|+||+||||++.|..++++|+++|||||+||+.+|.+.++.++.||||
T Consensus 11 ~~~i~~nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~h~i 90 (256)
T 1ct5_A 11 KTQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFI 90 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHHHHHHcCCCEEEEEcHHHHHHHHHhcccCeeEeec
Confidence 4468999999999999999999998 88999999999999999999999999999999999999999988667999999
Q ss_pred ecccccchHHH--hhcCCCccEEEecCcHHHHHHHHHHHHhcCCC---CccEEEEEeCCCCCccccc-------------
Q 029918 111 GNLQSNKVKPL--LAGVPNLAMVESVDNEKIAGRLNRMVETMGRK---PLKVLVQVNTSGEEYGECF------------- 172 (185)
Q Consensus 111 G~LQsNKvk~~--~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~---~l~VLIQVNis~E~sKsG~------------- 172 (185)
||||+||++.+ + +.++++|||||+++|++|++++.+.+ + +++|+||||+++|.+|+|+
T Consensus 91 G~lq~nk~~~~~~~---~~~~l~~sVds~~~a~~l~~~a~~~~-~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i 166 (256)
T 1ct5_A 91 GGLQTNKCKDLAKV---PNLYSVETIDSLKKAKKLNESRAKFQ-PDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFF 166 (256)
T ss_dssp SCCCGGGHHHHHHC---TTEEEEEEECSHHHHHHHHHHHHHHC-TTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcc---cccCEEEEECCHHHHHHHHHHHHHcC-CCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHH
Confidence 99999999999 6 78999999999999999999998765 5 7999999999999999998
Q ss_pred c--cCCcccccccCC
Q 029918 173 I--KCSWSHSCLLMI 185 (185)
Q Consensus 173 ~--~~~~l~l~g~m~ 185 (185)
. .||+|++.||||
T Consensus 167 ~~~~~~~L~l~Glmt 181 (256)
T 1ct5_A 167 LSEECKYIKLNGLMT 181 (256)
T ss_dssp HSTTCCSEEEEEEEC
T ss_pred HHccCCCeeEEEEEE
Confidence 2 689999999997
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.96 E-value=3.7e-29 Score=213.69 Aligned_cols=147 Identities=33% Similarity=0.466 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHHcCCcccccccHHHHHHHHhcC-------------
Q 029918 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQL------------- 101 (185)
Q Consensus 35 ~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~~G~r~FGENrvQEl~~K~~~L------------- 101 (185)
.+..+|..|+.+|+.+++.++|.|.+++|+||+|+++...|..++++|++.||+|++||+..+.+.+
T Consensus 24 ~l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~ 103 (282)
T 3cpg_A 24 EITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHHHHCCCCEEEEEeHHHHHHHHHhhhhhcccccccccc
Confidence 5889999999999999999999888999999999999999999999999999999999999998873
Q ss_pred --------CCCceEEEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc
Q 029918 102 --------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI 173 (185)
Q Consensus 102 --------~~~i~WHfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~ 173 (185)
++.|.|||||++|+||++.++ ..++++++|||++.++.|++.+.+.+ ++++|+|+||++.|++|.||.
T Consensus 104 ~G~~~d~~~~~i~~~~iG~~~~~~~~~~~---~~~~l~~~Vds~~~l~~L~~~a~~~~-~~~~V~lkVdtGme~~R~G~~ 179 (282)
T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAEKISRRAVARG-ITVGVLLEVNESGEESKSGCD 179 (282)
T ss_dssp C------CCEEECEEECSCCCGGGHHHHT---TTCSEEEEECCHHHHHHHHHHHHHHT-CCEEEEEEBCCSSCTTSSSBC
T ss_pred ccccccccccceeeeecChhHHHHHHHHH---HhCCEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEEECCCCCCCCCcC
Confidence 335899999999999999998 56899999999999999999887765 589999999999999999983
Q ss_pred ------------cCCcccccccCC
Q 029918 174 ------------KCSWSHSCLLMI 185 (185)
Q Consensus 174 ------------~~~~l~l~g~m~ 185 (185)
.||+|++.|||+
T Consensus 180 ~ee~~~l~~~i~~~~~l~l~Gl~t 203 (282)
T 3cpg_A 180 PAHAIRIAQKIGTLDGIELQGLMT 203 (282)
T ss_dssp GGGHHHHHHHHHTCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEeEEE
Confidence 599999999997
No 5
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.71 E-value=3.7e-17 Score=145.92 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I-~~a~~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++++ ++ ++|+||+|+ |+...| +.++++|++.||++++||+..+.+..+.+..|
T Consensus 27 l~al~~N~~~l~~~~----------~~-~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~~i 95 (376)
T 3kw3_A 27 VRAIVANYRTLAQHV----------AP-TECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMI 95 (376)
T ss_dssp HHHHHHHHHHHHHHH----------TT-SEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEE
T ss_pred HHHHHHHHHHHHHhC----------CC-CEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCCCE
Confidence 667778887777665 23 899999998 677766 67789999999999999999998775224578
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------cC
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------KC 175 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------~~ 175 (185)
+++|++|.++++.++ . ++++++|||++.++.|++.+.+.+ ++++|+|+||++ .+|.||. .+
T Consensus 96 lvl~~~~~~~~~~~~---~-~~i~~~V~s~~~l~~l~~~a~~~~-~~~~V~lkVdtG--m~R~G~~~~e~~~l~~~i~~~ 168 (376)
T 3kw3_A 96 ALLNGFPHKAEEFVA---Q-SGIIPLLNSWSTIEDWQTLCQKKN-KKFPAIIQVDTN--MSRLGLDKKELQKLIKNPTIF 168 (376)
T ss_dssp EETTCCCTTCHHHHH---H-TTCEEEECSHHHHHHHHHHHHHHT-CCCEEEEEBCSS--CCSSSBCHHHHHHHHHCCTHH
T ss_pred EEEeCCCHHHHHHHH---H-CCCEEEECCHHHHHHHHHHHHHcC-CCeEEEEEECCC--CCcccCCHHHHHHHHHHHHhC
Confidence 999999999999888 2 578999999999999999988765 589999999996 4899972 48
Q ss_pred CcccccccCC
Q 029918 176 SWSHSCLLMI 185 (185)
Q Consensus 176 ~~l~l~g~m~ 185 (185)
|+|++.||||
T Consensus 169 ~~l~l~Gl~t 178 (376)
T 3kw3_A 169 EKAEIKYILS 178 (376)
T ss_dssp HHSEEEEEEC
T ss_pred CCCcEEEEEE
Confidence 8999999997
No 6
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.66 E-value=5e-16 Score=138.16 Aligned_cols=135 Identities=14% Similarity=0.121 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I-~~a~~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++++ +..++|+||+|+ |+...| +.++++|++.||+++++|+..+.+... +..+
T Consensus 15 l~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~-~~~I 83 (371)
T 3e5p_A 15 TQAITENVQKECQRL----------PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGV-QDPI 83 (371)
T ss_dssp HHHHHHHHHHHHHSS----------CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTC-CSCE
T ss_pred HHHHHHHHHHHHHhc----------CCCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCC-CCCE
Confidence 556666666665543 247899999999 999888 567889999999999999998876542 3457
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHH-HHHHHhcCCCCccEEEEEeCCCCCcccccc-------------
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL-NRMVETMGRKPLKVLVQVNTSGEEYGECFI------------- 173 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L-~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------- 173 (185)
+++|++|.++++.++ . .+++++|||++.++.| ++.+.+.+ ++++|+|+||++ .+|.||.
T Consensus 84 lvlg~~~~~~~~~~~---~-~~i~~~V~s~~~l~~l~~~~a~~~~-~~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i~ 156 (371)
T 3e5p_A 84 LILSVVDLAYVPLLI---Q-YDLSVTVATQEWLEAALQQLTPESN-TPLRVHLKVDTG--MGRIGFLTPEETKQAVRFVQ 156 (371)
T ss_dssp EEEEECCGGGHHHHH---H-HTCEEEECCHHHHHHHHHHHCSCCS-CCBCEEEEBCSS--SCSSSBCSSHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHH---H-CCCEEEECCHHHHHHHHHHHHHHcC-CceEEEEEECCC--CCcCCCCCHHHHHHHHHHHH
Confidence 899999999999998 3 5789999999999999 99887654 589999999996 4799973
Q ss_pred cCCcccccccCC
Q 029918 174 KCSWSHSCLLMI 185 (185)
Q Consensus 174 ~~~~l~l~g~m~ 185 (185)
.||+|++.||||
T Consensus 157 ~~~~l~l~Gl~t 168 (371)
T 3e5p_A 157 SHKEFLWEGIFT 168 (371)
T ss_dssp HSTTBCCCEEEC
T ss_pred hCCCccEEEEEE
Confidence 389999999997
No 7
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.65 E-value=2.8e-16 Score=136.71 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHHH-HcCCcccccccHHHHHHHHhcC-CCCce
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQL-PDDLE 106 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L-~~~i~ 106 (185)
.+.|..|++.+++. + .++|++|+|+ ++...|..++ ++ ++.||+++++|+..+.+.- +.+|-
T Consensus 10 l~~l~~N~~~l~~~-----------~-~~~l~~vvKanaYG~g~~~i~~~l~~~-~~~~~va~~~Ea~~~~~~G~~~~Il 76 (357)
T 1rcq_A 10 LQALRHNYRLAREA-----------T-GARALAVIKADAYGHGAVRCAEALAAE-ADGFAVACIEEGLELREAGIRQPIL 76 (357)
T ss_dssp HHHHHHHHHHHHHH-----------H-CSEEEEECHHHHHTTCHHHHHHHHTTT-CSEEEESSHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHHhC-----------C-CCeEEEEEEeccccCCHHHHHHHHHHh-CCEEEEccHHHHHHHHhCCcCCCEE
Confidence 55677777766543 1 5899999999 9999999877 66 9999999999999998763 33554
Q ss_pred EEEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------c
Q 029918 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------K 174 (185)
Q Consensus 107 WHfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------~ 174 (185)
||+|++|.++++.++ . .+++++|||++.++.|++ + +.+ ++++|+|+||++ .+|.||. .
T Consensus 77 -~~~g~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~-a-~~~-~~~~V~l~vdtG--~~R~G~~~~~~~~~~~~i~~ 146 (357)
T 1rcq_A 77 -LLEGFFEASELELIV---A-HDFWCVVHCAWQLEAIER-A-SLA-RPLNVWLKMDSG--MHRVGFFPEDFRAAHERLRA 146 (357)
T ss_dssp -ETTCCSSGGGHHHHH---H-TTEEEEECSHHHHHHHHH-C-CCS-SCEEEEEEBCSS--SCSSSBCHHHHHHHHHHHHH
T ss_pred -EEeCCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHh-h-ccC-CCeEEEEEEcCC--CCCCCCCHHHHHHHHHHHHh
Confidence 799999999999999 3 478999999999999999 6 554 689999999997 4999983 4
Q ss_pred CCcccccccCC
Q 029918 175 CSWSHSCLLMI 185 (185)
Q Consensus 175 ~~~l~l~g~m~ 185 (185)
+|+|++.|||+
T Consensus 147 ~~~l~l~Gl~t 157 (357)
T 1rcq_A 147 SGKVAKIVMMS 157 (357)
T ss_dssp TTCEEEEEEEC
T ss_pred CCCCcEEEEEE
Confidence 89999999996
No 8
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.1e-15 Score=134.27 Aligned_cols=134 Identities=18% Similarity=0.078 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++.+ + .++|++|+|+ ++...|..++ ++|++.||.++++|+......-.+ ..+
T Consensus 18 l~~i~~N~~~l~~~~----------~-~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~-~~I 85 (384)
T 1xfc_A 18 LGAIEHNVRVLREHA----------G-HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGIT-APV 85 (384)
T ss_dssp HHHHHHHHHHHHHHH----------T-TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCC-SCE
T ss_pred HHHHHHHHHHHHHhC----------C-CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCC-CCE
Confidence 666777777776654 2 6899999999 9999998875 889999999999999998876222 247
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCccccccc-------------
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFIK------------- 174 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~~------------- 174 (185)
.|+|++|.++++.++ . ++++++|||++.++.|++.+.+.+ ++++|+|+||++ .+|.||..
T Consensus 86 l~~g~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vdtG--~~R~G~~~~~~~~~~~~~~~i 158 (384)
T 1xfc_A 86 LAWLHPPGIDFGPAL---L-ADVQVAVSSLRQLDELLHAVRRTG-RTATVTVKVDTG--LNRNGVGPAQFPAMLTALRQA 158 (384)
T ss_dssp EECCCCTTCCCHHHH---H-TTCEEEECSHHHHHHHHHHHHHHC-CCEEEEEEBCSS--CCSSSBCTTTHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHH---H-cCcEEEECCHHHHHHHHHHHHhcC-CceEEEEEEECC--CCccCCCcCcHHHHHHHHHHH
Confidence 799999999999998 3 567899999999999999987765 589999999997 48999842
Q ss_pred --CCcccccccCC
Q 029918 175 --CSWSHSCLLMI 185 (185)
Q Consensus 175 --~~~l~l~g~m~ 185 (185)
+|+|++.|||+
T Consensus 159 ~~~~~l~l~Gl~t 171 (384)
T 1xfc_A 159 MAEDAVRLRGLMS 171 (384)
T ss_dssp HHTTSEEEEEEEC
T ss_pred HhCCCCcEEEEEe
Confidence 79999999996
No 9
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.64 E-value=6.7e-16 Score=136.05 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++.+ ..++|++|+|+ ++...|..+ +++|++.||+++++|+..+.+.-.+ ...
T Consensus 14 l~~i~~N~~~l~~~~-----------~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~-~~i 81 (386)
T 1vfs_A 14 LDAVRANVRALRARA-----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQ-GRI 81 (386)
T ss_dssp HHHHHHHHHHHHTTS-----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCC-SEE
T ss_pred HHHHHHHHHHHHHhC-----------CCcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCC-CCE
Confidence 566677776665443 26899999999 999888874 5899999999999999999876322 234
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc--------------
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI-------------- 173 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~-------------- 173 (185)
-|+|++|.++++.++ . ++++++|||++.++.|++.+.+.+ ++++|+|+||++. +|.||.
T Consensus 82 l~~~~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vdtG~--~R~G~~~~e~~~~~~~~~~i 154 (386)
T 1vfs_A 82 MCWLWTPGGPWREAI---E-TDIDVSVSGMWALDEVRAAARAAG-RTARIQLKADTGL--GRNGCQPADWAELVGAAVAA 154 (386)
T ss_dssp EECCCCTTCCHHHHH---H-TTCEEEECSHHHHHHHHHHHHHHT-SCEEEEEEBCSSC--CSSSBCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHHHHhcC-CceEEEEEEcCCC--CCCCCCHhHHHHHHHHHHHH
Confidence 589999999999998 3 577899999999999999887665 5899999999973 999972
Q ss_pred -cCCcccccccCC
Q 029918 174 -KCSWSHSCLLMI 185 (185)
Q Consensus 174 -~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 155 ~~~~~l~l~Gl~t 167 (386)
T 1vfs_A 155 QAEGTVQVTGVWS 167 (386)
T ss_dssp HHTTSEEEEEEEC
T ss_pred HhCCCceEEEEEe
Confidence 379999999996
No 10
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.64 E-value=7.7e-16 Score=135.96 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHHHHcCCcccccccHHHHHHHHhc-CCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-LPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a~~~G~r~FGENrvQEl~~K~~~-L~~~i~W 107 (185)
.+.|..|++.+++.. | .++|++|+|+ ++...|..++.. ++.||+++++|+..+.+. ++.+|-
T Consensus 30 l~al~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~Il- 96 (379)
T 2rjg_A 30 RRALRHNLQRLRELA----------P-ASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVL- 96 (379)
T ss_dssp HHHHHHHHHHHHHHS----------T-TSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEE-
T ss_pred HHHHHHHHHHHHHhC----------C-CCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCEE-
Confidence 666777777765542 2 6899999999 999999999988 999999999999999876 333554
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------cC
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------KC 175 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------~~ 175 (185)
||+|++|.++++.++ . ++++++|||++.++.|++ + +.+ ++++|+|+||++ .+|.||. .+
T Consensus 97 ~~~g~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~-a-~~~-~~~~V~l~vdtG--m~R~G~~~~e~~~~~~~i~~~ 167 (379)
T 2rjg_A 97 LLEGFFDARDLPTIS---A-QHFHTAVHNEEQLAALEE-A-SLD-EPVTVWMKLDTG--MHRLGVRPEQAEAFYHRLTQC 167 (379)
T ss_dssp ETTCCSCGGGHHHHH---H-TTEEEEECSHHHHHHHHH-C-CCS-SCBCEEEEBCSS--CCSSSBCHHHHHHHHHHHTTC
T ss_pred EEECCCCHHHHHHHH---H-cCcEEEECCHHHHHHHHh-h-CCC-CCeEEEEEECCC--CCccCCCHHHHHHHHHHHHhC
Confidence 699999999999998 3 578999999999999999 6 544 689999999997 4899983 58
Q ss_pred Cc-ccccccCC
Q 029918 176 SW-SHSCLLMI 185 (185)
Q Consensus 176 ~~-l~l~g~m~ 185 (185)
|+ |++.|||+
T Consensus 168 ~~~l~l~Gl~t 178 (379)
T 2rjg_A 168 KNVRQPVNIVS 178 (379)
T ss_dssp SSBCSSCEEEC
T ss_pred CCcEEEEEEEE
Confidence 99 99999996
No 11
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.63 E-value=9.1e-16 Score=137.20 Aligned_cols=134 Identities=12% Similarity=0.090 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I-~~a~~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++ +++++ +..++|+||+|+ |+...| +.++++|++.||+++++|+....+.-. +..+
T Consensus 15 l~al~~N~~-l~~~~----------~~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi-~~~i 82 (382)
T 4a3q_A 15 LNAVASNFK-VFSTL----------HPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGI-TAKI 82 (382)
T ss_dssp HHHHHHHHH-HHHHH----------CTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTC-CSEE
T ss_pred HHHHHHHHH-HHhhc----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCC-CCCE
Confidence 667788888 76665 246899999999 998887 567789999999999999999876532 3467
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCC-CccEEEEEeCCCCCcccccc-------------
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK-PLKVLVQVNTSGEEYGECFI------------- 173 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~-~l~VLIQVNis~E~sKsG~~------------- 173 (185)
+++|++|.++++.++ . .+++++|||++.++.|++.+.+.+ + +++|+|+||++ .++.||.
T Consensus 83 lvlg~~~~~~~~~~~---~-~~i~~~V~s~~~l~~l~~~a~~~~-~~~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i~ 155 (382)
T 4a3q_A 83 LVLGVLPAKDIDKAI---Q-HRVALTVPSKQWLKEAIKNISGEQ-EKKLWLHIKLDTG--MGRLGIKDTNTYQEVIEIIQ 155 (382)
T ss_dssp EECSCCCGGGHHHHH---H-TTCBEEECCHHHHHHHHHTCCTTC-CSCEEEEEEBCSS--SSSSSBCCHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHHHHHcC-CCceeEEEEECCC--CCcCCCChHHHHHHHHHHHH
Confidence 888999999999998 2 578899999999999999887654 5 79999999996 4899973
Q ss_pred cCCcccccccCC
Q 029918 174 KCSWSHSCLLMI 185 (185)
Q Consensus 174 ~~~~l~l~g~m~ 185 (185)
.||+|++.||||
T Consensus 156 ~~~~l~l~Gl~t 167 (382)
T 4a3q_A 156 QYEQLVFEGVFT 167 (382)
T ss_dssp HCTTEEEEEEEC
T ss_pred hCCCceEEEEEE
Confidence 489999999997
No 12
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.63 E-value=1.2e-15 Score=134.48 Aligned_cols=131 Identities=10% Similarity=0.036 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHHH-HcCCcccccccHHHHHHHHhc-CCCCce
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLE 106 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~-L~~~i~ 106 (185)
.+.|..|++.+++.+ | .++|++|+|+ ++...|..++ ++|++.||+++++|+..+.+. ++.+
T Consensus 16 l~~l~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~-- 82 (380)
T 3co8_A 16 KSSLAYNVQYTKQVS----------G-AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDF-- 82 (380)
T ss_dssp HHHHHHHHHHHHHHH----------C-CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHHHHhC----------C-CcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCC--
Confidence 677888888876654 2 6899999999 9999988755 889999999999999999876 3333
Q ss_pred EEEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc-------------
Q 029918 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------- 173 (185)
Q Consensus 107 WHfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------- 173 (185)
..++|++|.++++.++ . .+++++|||++.++.|++.+. . + +++|+|+||++ .+|.||.
T Consensus 83 il~~g~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~~a~-~-~-~~~V~l~vdtG--~~R~G~~~~ee~~~~~~~i~ 153 (380)
T 3co8_A 83 ILILGPIDVKYAPIAS---K-YHFLTTVSSLDWLKSADKILG-K-E-KLSVNLAVDTG--MNRIGVRSKKDLKDEIEFLQ 153 (380)
T ss_dssp EEECSCCCGGGHHHHH---H-TTCEEEECCHHHHHHHHHHCT-T-C-CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHH---H-CCCEEEECCHHHHHHHHHhcc-c-C-CceEEEEEcCC--CCCCCCCCHHHHHHHHHHHH
Confidence 4477999999999998 3 377899999999999999876 5 3 78999999997 4999984
Q ss_pred c-CCcccccccCC
Q 029918 174 K-CSWSHSCLLMI 185 (185)
Q Consensus 174 ~-~~~l~l~g~m~ 185 (185)
. +|+|++.|||+
T Consensus 154 ~~~~~l~l~Gl~t 166 (380)
T 3co8_A 154 EHSDHFSYDGIFT 166 (380)
T ss_dssp HCTTTEEEEEEEC
T ss_pred hhCCCceEEEEEE
Confidence 3 89999999996
No 13
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.62 E-value=2.8e-15 Score=133.18 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHH-HHHHcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~-~a~~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++.+ +..++|+||+|+ |+...|. .++++|++.||+++++|+..+.+... +..+
T Consensus 13 l~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~-~~~i 81 (374)
T 4ecl_A 13 LNNLEHNVNTLQKAM----------SPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGI-SSEI 81 (374)
T ss_dssp HHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTC-CSEE
T ss_pred HHHHHHHHHHHHHhc----------CCCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCC-CCCE
Confidence 566777777765543 247999999999 9998885 56689999999999999999877643 3467
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCccccc-----------ccCC
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECF-----------IKCS 176 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~-----------~~~~ 176 (185)
+++|++|.++++.++ . .+++++|||++.++.|++. + ++++|+|+||++ .+|.|| ..||
T Consensus 82 lvlg~~~~~~~~~~~---~-~~i~~~v~s~~~l~~l~~~----~-~~~~v~lkvdtG--m~R~G~~~e~~~~~~~i~~~~ 150 (374)
T 4ecl_A 82 LILGYTSPSRAKELC---K-YELTQTLIDYRYSLLLNKQ----G-YDIKAHIKIDTG--MHRLGFSTEDKDKILAAFSLK 150 (374)
T ss_dssp EECSCCCGGGHHHHH---H-TTCEEEECCHHHHHHHHTT----C-CCEEEEEEEESS--SCSSSEESSCHHHHHHHTTCT
T ss_pred EEEeCCCHHHHHHHH---H-CCCEEEECCHHHHHHHHhc----C-CCccEEEEEcCC--CCcCccCHHHHHHHHHHHhCC
Confidence 888999999999998 3 5789999999999999876 3 589999999996 478886 2589
Q ss_pred cccccccCC
Q 029918 177 WSHSCLLMI 185 (185)
Q Consensus 177 ~l~l~g~m~ 185 (185)
+|++.||||
T Consensus 151 ~l~l~Gl~t 159 (374)
T 4ecl_A 151 HIKVAGIFT 159 (374)
T ss_dssp TEEEEEEEC
T ss_pred CceEEEEEE
Confidence 999999996
No 14
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.59 E-value=7.4e-15 Score=129.79 Aligned_cols=133 Identities=8% Similarity=0.060 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHH-HHcCCcccccccHHHHHHHHhc-CCCCce
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQ-LPDDLE 106 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~-L~~~i~ 106 (185)
.+.|..|++.+++.+ +..++|++|+|+ ++...|..+ .++|++.||.++++|+....+. ++.+|
T Consensus 18 l~ai~~N~~~l~~~~----------~~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~i- 86 (391)
T 2vd8_A 18 LDAIYNNVTHIXEFI----------PSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPI- 86 (391)
T ss_dssp HHHHHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCE-
T ss_pred HHHHHHHHHHHHHhc----------CCCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCce-
Confidence 667778887776654 237899999999 999888875 5899999999999999998876 33333
Q ss_pred EEEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc-------------
Q 029918 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------- 173 (185)
Q Consensus 107 WHfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------- 173 (185)
-++|++|.++++.++ . .+++++|||++.++.|++ +.+.+ ++++|+|+||++ .+|.||.
T Consensus 87 -l~~g~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~-a~~~~-~~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i~ 157 (391)
T 2vd8_A 87 -LVLGPSPPRDINVAA---E-NDVALTVFQXEWVDEAIX-LWDGS-STMXYHINFDSG--MGRIGIRERXELXGFLXSLE 157 (391)
T ss_dssp -EECSCCCGGGHHHHH---H-TTEEEECCCHHHHHHHHH-HCCSS-CCEEEEEEBCSS--CCSSSBCCHHHHHHHHHHHT
T ss_pred -EEecCCChHHHHHHH---H-CCeEEEEcCHHHHHHHHH-HHhcC-CceEEEEEEeCC--CCCCCCCchhhHHHHHHHHh
Confidence 367999999999998 3 578899999999999999 76554 689999999997 4899983
Q ss_pred cCCcccccccCC
Q 029918 174 KCSWSHSCLLMI 185 (185)
Q Consensus 174 ~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 158 ~~~~l~l~Gl~t 169 (391)
T 2vd8_A 158 GAPFLELEGVYT 169 (391)
T ss_dssp TCTTEEEEEEEC
T ss_pred hcCCceEEEeee
Confidence 389999999996
No 15
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.58 E-value=1.7e-15 Score=136.31 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHH-HHHHHc-CCcccccccHHHHHHHHhcCCCCce
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEA-GHRCFGENYVQEIVEKAAQLPDDLE 106 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I-~~a~~~-G~r~FGENrvQEl~~K~~~L~~~i~ 106 (185)
.+.|..|++.+++. +..++|+||+|+ |+...| +.++++ |++.||++++||+..+.+... +..
T Consensus 16 l~al~~N~~~l~~~-----------~~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi-~~~ 83 (395)
T 3hur_A 16 LDAAAHNLQEIREW-----------TKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADL-TLP 83 (395)
T ss_dssp HHHHHHHHHHHHHH-----------HTCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTC-CSC
T ss_pred HHHHHHHHHHHHhc-----------CCCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCC-CCC
Confidence 56677777776554 136899999999 788777 677789 999999999999999877643 346
Q ss_pred EEEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc-------------
Q 029918 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------- 173 (185)
Q Consensus 107 WHfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------- 173 (185)
|+++|++|.++++.++ . ++++++|||++.++.|++. . + +++|+|+||++ .++.||.
T Consensus 84 Ilvlg~~~~~~~~~~~---~-~~l~~~V~s~~~l~~l~~~-~---~-~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i~ 152 (395)
T 3hur_A 84 IWVLGAWDYSDLKLFI---D-HDIVITIPSLAWLQNLPDF-E---G-TLKVSLAIDTG--MTRIGFDKADEISAAKKIID 152 (395)
T ss_dssp EEESSCCCGGGHHHHH---H-TTEEEEECCHHHHHTCCCC-S---S-CEEEEEEBCCS--SCSSSBCCHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHh-c---C-CCcEEEEEcCC--CCCcCCChHHHHHHHHHHHH
Confidence 8999999999999998 3 6899999999999999876 3 3 79999999996 5899973
Q ss_pred cCCcccccccCC
Q 029918 174 KCSWSHSCLLMI 185 (185)
Q Consensus 174 ~~~~l~l~g~m~ 185 (185)
.||+|++.|+||
T Consensus 153 ~~~~l~l~Gl~T 164 (395)
T 3hur_A 153 KNPQLDLFSVYT 164 (395)
T ss_dssp HCTTEEEEEEEC
T ss_pred hCCCceEEEEEE
Confidence 489999999997
No 16
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.57 E-value=6.5e-15 Score=128.07 Aligned_cols=131 Identities=13% Similarity=0.039 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++.+ |. ++|++|+|+ ++...|..++ ++|++.||.++++|+..+.+.-. +...
T Consensus 10 l~~l~~N~~~~~~~~----------~~-~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~-~~~i 77 (361)
T 2dy3_A 10 LDAIAHNTRVLKQMA----------GP-AKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGI-SQEV 77 (361)
T ss_dssp HHHHHHHHHHHHHHH----------TT-SEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTC-CSEE
T ss_pred HHHHHHHHHHHHHhC----------CC-cEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCC-CCCE
Confidence 566778887776654 23 899999999 9999888874 88999999999999999987622 2346
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------cC
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------KC 175 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------~~ 175 (185)
+++|++|.++++.++ . ..++++|||++.+++|++.+.+ +++|+|+||++ .+|.|+. .+
T Consensus 78 l~~~~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~~R~G~~~~~~~~~~~~~~~~ 147 (361)
T 2dy3_A 78 LCWIWTPEQDFRAAI---D-RNIDLAVISPAHAKALIETDAE----HIRVSIKIDSG--LHRSGVDEQEWEGVFSALAAA 147 (361)
T ss_dssp EECCCCTTSCHHHHH---T-TTCEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--SCSSSBCHHHHHHHHHHHHTC
T ss_pred EEECCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--CCCCCCCHHHHHHHHHHHHhC
Confidence 899999999999998 3 5678999999999999976542 68999999997 4899983 58
Q ss_pred CcccccccCC
Q 029918 176 SWSHSCLLMI 185 (185)
Q Consensus 176 ~~l~l~g~m~ 185 (185)
|+|++.|||+
T Consensus 148 ~~l~~~Gl~t 157 (361)
T 2dy3_A 148 PHIEVTGMFT 157 (361)
T ss_dssp TTEEEEEEEC
T ss_pred CCCCEEEEEe
Confidence 9999999996
No 17
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.56 E-value=1.4e-14 Score=128.68 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecC----CCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCCceE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt----~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L~~~i~W 107 (185)
.+.|..|++.+++++ +..++|+||+|+ |+...|..++ ++ ++.||+++++|+..+.+... +..+
T Consensus 15 l~al~~N~~~l~~~~----------~~~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G~-~~~i 82 (367)
T 3mub_A 15 LGAIRQNIQQMGAHI----------PQGTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAGL-SKPI 82 (367)
T ss_dssp HHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTTC-CSCE
T ss_pred HHHHHHHHHHHHHhC----------CCCCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcCC-CCCE
Confidence 556667776665553 247899999999 9999997555 67 99999999999999877643 3468
Q ss_pred EEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCccccccc----------C--
Q 029918 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFIK----------C-- 175 (185)
Q Consensus 108 HfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~~----------~-- 175 (185)
+++|++|.++++.++ . .+++++|||++.++.|++.+.+. ++++|+|+||++ .++.||.. +
T Consensus 83 lvlg~~~~~~~~~~~---~-~~l~~~V~s~~~l~~l~~~a~~~--~~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i~~ 154 (367)
T 3mub_A 83 LILGVSEIEAVALAK---E-YDFTLTVAGLEWIQALLDKEVDL--TGLTVHLKIDSG--MGRIGFREASEVEQAQDLLQQ 154 (367)
T ss_dssp EEEEECCGGGHHHHH---H-TTEEEEECCHHHHHHHHHTTCCC--TTCEEEEEECSS--CCSSSBCSHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHHHHhc--CCeeEEEEECCC--CCcCCCCcHHHHHHHHHHHcc
Confidence 899999999999998 3 48899999999999999987643 579999999996 48999731 1
Q ss_pred CcccccccCC
Q 029918 176 SWSHSCLLMI 185 (185)
Q Consensus 176 ~~l~l~g~m~ 185 (185)
|+|++.||||
T Consensus 155 ~~l~l~Gl~t 164 (367)
T 3mub_A 155 HGVCVEGIFT 164 (367)
T ss_dssp TTCEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 8999999996
No 18
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.55 E-value=1.3e-14 Score=130.73 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCc--eEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDL--EWHF 109 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I-~~a~~~G~r~FGENrvQEl~~K~~~L~~~i--~WHf 109 (185)
.+.|..|++.+++.+.. ..++|.+|+|+++...| +.++++|++.|+.++++|+......-.++| .|++
T Consensus 53 l~al~~N~~~l~~~~~~---------~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~~ill~~~~ 123 (426)
T 3gwq_A 53 ADRVEHNLKWMQAFVAE---------YGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMANQL 123 (426)
T ss_dssp HHHHHHHHHHHHHHHHH---------HCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEECSCC
T ss_pred HHHHHHHHHHHHHHHhh---------cCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCCeEEEECCc
Confidence 66788888888776532 25899999999998888 567899999999999999998876532222 3444
Q ss_pred EecccccchHHHhhcC--CCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc-------------c
Q 029918 110 IGNLQSNKVKPLLAGV--PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI-------------K 174 (185)
Q Consensus 110 IG~LQsNKvk~~~~~~--~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~-------------~ 174 (185)
+| .+|++.++... +.++++++|||++.++.|++.+.+.+ ++++|+||||++ .+|+|+. .
T Consensus 124 ~~---~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~-~~~~V~l~VdtG--~~R~Gv~~~~e~~~l~~~i~~ 197 (426)
T 3gwq_A 124 VG---RRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVN-KQLQVLLELGVP--GGRTGVRDAAQRNAVLEAITR 197 (426)
T ss_dssp CS---HHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT-CCEEEEEEECCT--TSSSSBCSHHHHHHHHHHHHT
T ss_pred CC---HHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCC-CeeEEEEEeCCC--CCcCCCCCHHHHHHHHHHHHc
Confidence 44 46776654211 23689999999999999999998765 689999999997 6899973 4
Q ss_pred CC-cccccccCC
Q 029918 175 CS-WSHSCLLMI 185 (185)
Q Consensus 175 ~~-~l~l~g~m~ 185 (185)
+| +|++.|||+
T Consensus 198 ~~~~l~l~Gl~t 209 (426)
T 3gwq_A 198 YPDTLKLAGVEL 209 (426)
T ss_dssp STTTEEEEEEEE
T ss_pred CCCCEEEEeEEE
Confidence 89 999999995
No 19
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.53 E-value=5e-14 Score=124.73 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCe-EEEEeecC----CCHHHHHHH-HHcCCcccccccHHHHHHHHhc-CCCCc
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRI-RIVAVSKT----KPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQ-LPDDL 105 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V-~LvAVSKt----~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~-L~~~i 105 (185)
.+.|..|++.+++.+ | .+ +|++|+|+ ++...|..+ .++|++.||.++++|+...... ++.+
T Consensus 14 l~ai~~N~~~l~~~~----------~-~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~~- 81 (388)
T 1bd0_A 14 LDAIYDNVENLRRLL----------P-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAP- 81 (388)
T ss_dssp HHHHHHHHHHHHHHS----------C-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSC-
T ss_pred HHHHHHHHHHHHHhC----------C-CCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCCC-
Confidence 666777777775543 2 67 99999999 999998875 5889999999999999998876 3333
Q ss_pred eEEEEecccccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc------------
Q 029918 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI------------ 173 (185)
Q Consensus 106 ~WHfIG~LQsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~------------ 173 (185)
..|+|+.|.++++.++ . .+++++|||++.++.|++.+ +.+ ++++|+|+||++ .+|.||.
T Consensus 82 -Il~~g~~~~~~~~~~~---~-~~i~~~vds~~~l~~l~~~a-~~~-~~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i 152 (388)
T 1bd0_A 82 -ILVLGASRPADAALAA---Q-QRIALTVFRSDWLEEASALY-SGP-FPIHFHLKMDTG--MGRLGVKDEEETKRIVALI 152 (388)
T ss_dssp -EEECSCCCGGGHHHHH---H-TTEEEEECCHHHHHHHHHHC-CCS-SCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHH
T ss_pred -EEEECCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHHh-ccC-CCeEEEEEEcCC--CCcCCCCCHHHHHHHHHHH
Confidence 4578999999999998 3 57889999999999999988 654 689999999997 4899983
Q ss_pred -cCCcccccccCC
Q 029918 174 -KCSWSHSCLLMI 185 (185)
Q Consensus 174 -~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 153 ~~~~~l~l~Gl~t 165 (388)
T 1bd0_A 153 ERHPHFVLEGLYT 165 (388)
T ss_dssp HHSTTEEEEEEEC
T ss_pred HhCCCceEEEEEE
Confidence 389999999996
No 20
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.46 E-value=3.5e-13 Score=119.83 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|.+|++.+++.+..+|.+.+ ..+++++|+|+.+...|..+ .++|+ .|.=--.+|+......-.++.+|||+|
T Consensus 37 l~~l~~n~~~l~~~~~~a~~~~~---~~~~~~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~g 112 (434)
T 1twi_A 37 EEQIKINYNRYIEAFKRWEEETG---KEFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVPSKKIVFNG 112 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS---CCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGEEECC
T ss_pred HHHHHHHHHHHHHhhhhhhcccC---CCeEEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHCCCCCCcEEEEC
Confidence 78899999999999988887765 36999999999999888885 47886 444444455555444332336899999
Q ss_pred cccc-cchHHHhhcCCCccE-EEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCC------------CCcccccc----
Q 029918 112 NLQS-NKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EEYGECFI---- 173 (185)
Q Consensus 112 ~LQs-NKvk~~~~~~~~~~~-IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~------------E~sKsG~~---- 173 (185)
++++ ..++.++ . ..+ +++|||+..+++|++.+.+.+ ++++|+|+||++. +.+|.|+.
T Consensus 113 ~~k~~~~i~~a~---~-~~i~~~~vds~~el~~l~~~a~~~~-~~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~~~ 187 (434)
T 1twi_A 113 NCKTKEEIIMGI---E-ANIRAFNVDSISELILINETAKELG-ETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESG 187 (434)
T ss_dssp SSCCHHHHHHHH---H-TTCSEEEECSHHHHHHHHHHHHHHT-CCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTS
T ss_pred CCCCHHHHHHHH---H-CCCCEEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCCCCCCcccccCCCCCCccCChhhh
Confidence 9865 6788887 2 234 799999999999999887665 5789999999874 36899972
Q ss_pred ----------cCCcccccccCC
Q 029918 174 ----------KCSWSHSCLLMI 185 (185)
Q Consensus 174 ----------~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 188 ~~~~~~~~~~~~~~l~l~Gl~~ 209 (434)
T 1twi_A 188 IAMKAIKMALEMEYVNVVGVHC 209 (434)
T ss_dssp HHHHHHHHHHHCSSEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEEEE
Confidence 378999999986
No 21
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.46 E-value=4.6e-13 Score=118.39 Aligned_cols=136 Identities=10% Similarity=0.019 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I-~~a~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|..|++.+++.+ + .+++.+|+|+.+...| +.+.++|+ .|+.++++|+......-.+..+|||.|
T Consensus 41 l~~l~~N~~~l~~~~-------~----~~~l~~vvKan~~~~v~~~l~~~G~-~~~vas~~E~~~~~~~G~~~~~Il~~g 108 (420)
T 2p3e_A 41 SNFIKERFEAYRKAF-------P----DALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLAKKAGIPPERIVYAG 108 (420)
T ss_dssp HHHHHHHHHHHHHHS-------T----TSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGEEECS
T ss_pred HHHHHHHHHHHHHhC-------C----cCeEEEEEecCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChhHEEEeC
Confidence 556666666665443 2 3699999999998888 56778999 999999999998877532234699999
Q ss_pred c-ccccchHHHhhcCCCccE-EEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCC------------CCcccccc----
Q 029918 112 N-LQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EEYGECFI---- 173 (185)
Q Consensus 112 ~-LQsNKvk~~~~~~~~~~~-IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~------------E~sKsG~~---- 173 (185)
+ .+.++++.++ .+ .+ +.+|||++.+++|++.+.+.+ ++++|+|+||.+. +++|.|+.
T Consensus 109 ~~~~~~~l~~a~---~~-~i~~~~vds~~~l~~l~~~a~~~~-~~~~v~lRvn~~~~~~~~~~idtG~~~~R~G~~~~e~ 183 (420)
T 2p3e_A 109 VGKTEKELTDAV---DS-EILMFNVESRQELDVLNEIAGKLG-KKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREA 183 (420)
T ss_dssp SCCCHHHHHHHH---HT-TCSEEEECCHHHHHHHHHHHHHHT-CCEEEEEEEEC----------------CCSCEEGGGH
T ss_pred CCCCHHHHHHHH---Hc-CCCEEEeCCHHHHHHHHHHHHhcC-CCCcEEEEECCCCCCCCCcccccCCCCCCCCCCHHHH
Confidence 9 5999999998 33 45 799999999999999887665 5789999999865 56899972
Q ss_pred --------cCCcccccccCC
Q 029918 174 --------KCSWSHSCLLMI 185 (185)
Q Consensus 174 --------~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 184 ~~~~~~~~~~~~l~l~Gl~~ 203 (420)
T 2p3e_A 184 QKEYEYASKLENLEIVGIHC 203 (420)
T ss_dssp HHHHHHHHTCTTEEEEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEEE
Confidence 489999999986
No 22
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.40 E-value=1.1e-12 Score=115.29 Aligned_cols=136 Identities=14% Similarity=0.058 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHH-HHHHcCCcccccccHHHHHHHHhcCCCCceEEE--
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF-- 109 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~-~a~~~G~r~FGENrvQEl~~K~~~L~~~i~WHf-- 109 (185)
.+.|..|++.+++++. +..++|.+|+|+++...|. .++++|++.||.++++|+....+.- +.+.+
T Consensus 21 l~al~~N~~~l~~~~~---------~~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~G---i~~~il~ 88 (376)
T 3llx_A 21 EAKLKSNINYLKQRVE---------SLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAG---YTDLLYA 88 (376)
T ss_dssp HHHHHHHHHHHHHHHH---------HTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTT---CCEEEEE
T ss_pred HHHHHHHHHHHHHHHH---------hCCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCC---CCcEEEe
Confidence 6778888888877763 1358999999999987774 5678999999999999999887653 23332
Q ss_pred EecccccchHHHhhcC-CCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCccccccc-----------CCc
Q 029918 110 IGNLQSNKVKPLLAGV-PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFIK-----------CSW 177 (185)
Q Consensus 110 IG~LQsNKvk~~~~~~-~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~~-----------~~~ 177 (185)
.|.. .+|++.++.-. +.++++++|||++.++.|++.+.+.+ ++++|+|+||++. ++.||.. + +
T Consensus 89 ~~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~-~~~~V~l~vdtG~--~R~G~~~~~~~l~~~~~~l-~ 163 (376)
T 3llx_A 89 VGIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFG-QDFSVFIEIDSDD--HRGGIKPSDSKLLTIAKTL-G 163 (376)
T ss_dssp EECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT-CCCEEEEEBCSSS--SSSCBCTTCTHHHHHHHHH-G
T ss_pred CCCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcC-CceEEEEEECCCC--CCCCCCCchHHHHHHHHHh-C
Confidence 3566 89999887200 14678999999999999999988765 5899999999975 7888732 4 7
Q ss_pred ccccccCC
Q 029918 178 SHSCLLMI 185 (185)
Q Consensus 178 l~l~g~m~ 185 (185)
|++.|||+
T Consensus 164 l~l~Gl~t 171 (376)
T 3llx_A 164 EHFTGLMT 171 (376)
T ss_dssp GGEEEEEC
T ss_pred CEEeEEEE
Confidence 89999996
No 23
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.33 E-value=8.9e-12 Score=110.55 Aligned_cols=136 Identities=9% Similarity=0.067 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-H--cCCcccccccHHHHHHHHhcCCCCceEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-E--AGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~--~G~r~FGENrvQEl~~K~~~L~~~i~WHf 109 (185)
.+.|.+|++.+++.+ |..+++.+|+|+.+...|..++ + .|....+.+.++++.+.- + +..+|||
T Consensus 24 ~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G--~-~~~~I~~ 90 (428)
T 2j66_A 24 GDFIEAHYRQLRSRT----------NPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAG--F-SAENIIF 90 (428)
T ss_dssp HHHHHHHHHHHHHTS----------CTTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTT--C-CGGGEEE
T ss_pred HHHHHHHHHHHHHhc----------CCCcEEEEEeeeCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcC--C-CcCeEEE
Confidence 566777777665543 2479999999999998888876 3 355666777777776542 2 2346999
Q ss_pred Eecccc-cchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCC-----------CCCcccccc----
Q 029918 110 IGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS-----------GEEYGECFI---- 173 (185)
Q Consensus 110 IG~LQs-NKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis-----------~E~sKsG~~---- 173 (185)
+|++++ ++++.++ .+-..+.+|||+..+++|++.+.+.+ ++++|+|+||++ ++++|.|+.
T Consensus 91 ~g~~k~~~~i~~a~---~~~v~~~~vds~~el~~l~~~a~~~~-~~~~V~lrvn~g~~~~~~~~~~~~~~srfG~~~~e~ 166 (428)
T 2j66_A 91 SGPGKKRSELEIAV---QSGIYCIIAESVEELFYIEELAEKEN-KTARVAIRINPDKSFGSTAIKMGGVPRQFGMDESML 166 (428)
T ss_dssp CCSCCCHHHHHHHH---HHTCSEEEECSHHHHHHHHHHHHHHT-CCEEEEEEEECSSCC--CCCSSSCCCCSSSEEGGGH
T ss_pred eCCCCCHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHHhhC-CCceEEEEEcCCCCCCCCccccCCCCCCCCCCHHHH
Confidence 999988 7899998 33333899999999999999887765 578999999997 567999972
Q ss_pred --------cCCcccccccCC
Q 029918 174 --------KCSWSHSCLLMI 185 (185)
Q Consensus 174 --------~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 167 ~~~~~~~~~~~~l~l~Gl~~ 186 (428)
T 2j66_A 167 DAVMDAVRSLQFTKFIGIHV 186 (428)
T ss_dssp HHHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEEE
Confidence 489999999986
No 24
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.32 E-value=3.6e-12 Score=110.94 Aligned_cols=139 Identities=12% Similarity=-0.045 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|..|++.+++.+.. ..++|.+|+|+++...|..++ ++|++.|+.++++|+......-.+++-| +.|
T Consensus 19 l~~l~~N~~~l~~~~~~---------~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~ii~-~~~ 88 (376)
T 3anu_A 19 RTTARRNAERMRERCRA---------LGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFDDILL-AYP 88 (376)
T ss_dssp HHHHHHHHHHHHHHHHH---------HTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCEEEEE-EEE
T ss_pred HHHHHHHHHHHHHHHHH---------cCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCCeEEE-ECC
Confidence 67788888888777631 258999999999998888876 6899999999999999987753333333 679
Q ss_pred cccccchHHHhhcCCC-ccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCcccccc--c---------C--C-
Q 029918 112 NLQSNKVKPLLAGVPN-LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEEYGECFI--K---------C--S- 176 (185)
Q Consensus 112 ~LQsNKvk~~~~~~~~-~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E~sKsG~~--~---------~--~- 176 (185)
.. .++++.++.-... .+++.+|||++.++.|++.+.+.+ .+++|+|+||++. ++.|+. + + |
T Consensus 89 ~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vd~g~--~R~G~~~~~~~~~~l~~~i~~~~ 164 (376)
T 3anu_A 89 VP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHG-KRWLVWLKLDCGN--GRAGVRPTDPAALELAQAIANDA 164 (376)
T ss_dssp CC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTT-CCEEEEEEECCC----CSSBCTTSHHHHHHHHHHHHSC
T ss_pred Cc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCC-CceEEEEEECCCC--CcCCCCCCchhHHHHHHHHhCCC
Confidence 98 9999998820001 577899999999999998776554 6899999999975 788873 1 1 6
Q ss_pred --cccccccCC
Q 029918 177 --WSHSCLLMI 185 (185)
Q Consensus 177 --~l~l~g~m~ 185 (185)
+|+|.|||+
T Consensus 165 ~~~l~l~Gl~~ 175 (376)
T 3anu_A 165 PEEVTLVGVYA 175 (376)
T ss_dssp TTTEEEEEEEE
T ss_pred CCceEEEEEEe
Confidence 899999985
No 25
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.28 E-value=2.5e-11 Score=108.08 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-Hc--CCcccccccHHHHHHHHhcCCCCceEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EA--GHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~--G~r~FGENrvQEl~~K~~~L~~~i~WHf 109 (185)
.+.|..|++.+++.+ ++ ..+++.+|+|+.+...|..++ ++ |...++.+.++++.++ -++ ...|+|
T Consensus 40 l~~i~~N~~~l~~~~-------~~--~~~~l~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~--G~~-~~~i~~ 107 (425)
T 2qgh_A 40 FDKIKQAFLNYKEAF-------KG--RKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKA--GIK-PYRIVF 107 (425)
T ss_dssp HHHHHHHHHHHHHTT-------CS--SCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHT--TCC-GGGEEE
T ss_pred HHHHHHHHHHHHHhc-------Cc--CCCEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHc--CCC-hhHEEE
Confidence 556666666665443 21 268999999999998888776 55 4556667777777654 232 256999
Q ss_pred Eecc-cccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCC------------CCCcccccc---
Q 029918 110 IGNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEEYGECFI--- 173 (185)
Q Consensus 110 IG~L-QsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis------------~E~sKsG~~--- 173 (185)
.|+. +.++++.+++ ..+.++ +|||+..+++|++.+.+.+ ++++|+|+||++ ++.+|.|+.
T Consensus 108 ~g~~k~~~~i~~a~~--~gv~~i-~vds~~el~~l~~~a~~~~-~~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~e 183 (425)
T 2qgh_A 108 SGVGKSAFEIEQALK--LNILFL-NVESFMELKTIETIAQSLG-IKARISIRINPNIDAKTHPYISTGLKENKFGVGEKE 183 (425)
T ss_dssp CCTTCCHHHHHHHHH--TTCSEE-EECSHHHHHHHHHHHHHHT-CCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHH
T ss_pred cCCCCCHHHHHHHHH--CCCCEE-EeCCHHHHHHHHHHHHhcC-CCceEEEEEeCCCCCCCCcccccCCCCCCCcCCHHH
Confidence 9986 6799999983 225555 9999999999999887665 578999999986 568999983
Q ss_pred ---------cCCcccccccCC
Q 029918 174 ---------KCSWSHSCLLMI 185 (185)
Q Consensus 174 ---------~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 184 ~~~l~~~~~~~~~l~l~Gl~~ 204 (425)
T 2qgh_A 184 ALEMFLWAKKSAFLEPVSVHF 204 (425)
T ss_dssp HHHHHHHHHHCSSEEEEEEEC
T ss_pred HHHHHHHHHhCCCccEEEEEE
Confidence 489999999996
No 26
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.14 E-value=1.9e-10 Score=103.94 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcC--CcccccccHHHHHHHHhcCCCCceEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAG--HRCFGENYVQEIVEKAAQLPDDLEWHF 109 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G--~r~FGENrvQEl~~K~~~L~~~i~WHf 109 (185)
.+.|..|++.+++.+ +..+++.+|+|+.+...|..++ ++| ...+..+.++++... .++ +-+|||
T Consensus 49 ~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~--G~~-~~~I~~ 115 (467)
T 2o0t_A 49 EDDFRSRCRETAAAF----------GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHA--SFP-PERITL 115 (467)
T ss_dssp HHHHHHHHHHHHHHT----------SSGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHT--TCC-GGGEEE
T ss_pred HHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHc--CCC-cccEEE
Confidence 566777777665554 2468999999999998888776 667 666777777777654 232 257999
Q ss_pred Eecccc-cchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCC------------CCCcccccc---
Q 029918 110 IGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEEYGECFI--- 173 (185)
Q Consensus 110 IG~LQs-NKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis------------~E~sKsG~~--- 173 (185)
.|++++ ++++.++. ..+.+| +|||+..+++|++.+.+.+ .+++|+|+||++ ++.+|.|+.
T Consensus 116 ~g~~k~~~~i~~a~~--~gv~~i-~vds~~el~~l~~~a~~~~-~~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~~ 191 (467)
T 2o0t_A 116 HGNNKSVSELTAAVK--AGVGHI-VVDSMTEIERLDAIAGEAG-IVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVAS 191 (467)
T ss_dssp CCTTCCHHHHHHHHH--HTCSEE-EECSHHHHHHHHHHHHHHT-CCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTT
T ss_pred eCCCCCHHHHHHHHH--CCCCEE-EECCHHHHHHHHHHHHhhC-CCCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCCH
Confidence 999987 89999983 124444 9999999999999887665 578999999984 668999984
Q ss_pred -----------cCCcccccccCC
Q 029918 174 -----------KCSWSHSCLLMI 185 (185)
Q Consensus 174 -----------~~~~l~l~g~m~ 185 (185)
.+++|++.|||+
T Consensus 192 ~e~~~~~~~~~~~~~l~l~Gl~~ 214 (467)
T 2o0t_A 192 GAAMAAVRRVFATDHLRLVGLHS 214 (467)
T ss_dssp THHHHHHHHHHHCSSEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEE
Confidence 278999999985
No 27
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=98.22 E-value=1.4e-05 Score=72.14 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=90.8
Q ss_pred CeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhc-CCCCceEEEEecc-cccchHHHhhcCCCccEEEecCc
Q 029918 60 RIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLEWHFIGNL-QSNKVKPLLAGVPNLAMVESVDN 136 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~-L~~~i~WHfIG~L-QsNKvk~~~~~~~~~~~IhSVDs 136 (185)
.+++.++.|..+...|..++ ++|. .|.=--..|+..=... ++. -...|-|+. ....++.++. ..+. +-+|||
T Consensus 74 ~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~-~~I~~~g~~k~~~ei~~a~~--~gv~-~~~vds 148 (443)
T 3vab_A 74 DTLVTYALKANSNQAVLTALAKLGA-GADTVSQGEIRRALAAGIPA-NRIVFSGVGKTPREMDFALE--AGIY-CFNVES 148 (443)
T ss_dssp CEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCG-GGEEEECTTCCHHHHHHHHH--HTCS-EEEECC
T ss_pred CcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCh-hhEEEcCCCCCHHHHHHHHH--CCCC-EEEECC
Confidence 58999999999998776655 6787 7777777887653332 222 245888974 6677888873 1233 369999
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEEEeCC------------CCCcccccc------------cCCcccccccCC
Q 029918 137 EKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEEYGECFI------------KCSWSHSCLLMI 185 (185)
Q Consensus 137 ~kLA~~L~k~a~~~~~~~l~VLIQVNis------------~E~sKsG~~------------~~~~l~l~g~m~ 185 (185)
+.-+++|++.+.+.+ ++.+|+|.||++ .+.+|.|+. .+++|++.|||+
T Consensus 149 ~~el~~l~~~a~~~~-~~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~~e~~~ll~~~~~~~~l~l~Glh~ 220 (443)
T 3vab_A 149 EPELEILSARAVAAG-KVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAASLPGLNVVGIDM 220 (443)
T ss_dssp HHHHHHHHHHHHHHT-CCEEEEEEEECCBCTTTCCBC---CCCCSSSEEGGGHHHHHHHHHHSTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhcC-CCceEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 999999999988765 578999999975 467999972 478999999985
No 28
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=98.20 E-value=9e-06 Score=73.27 Aligned_cols=138 Identities=14% Similarity=0.045 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhc-CCCCceEEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLEWHFI 110 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~-L~~~i~WHfI 110 (185)
.+.|..|++.+++.+ ++ ..+++.++.|..+...|..++ ++|. .|.=--..|+..=... ++. -.-.|-
T Consensus 59 l~~l~~n~~~l~~~~-------~~--~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~-~~I~~~ 127 (441)
T 3n2b_A 59 RATLERHWHAFDKSV-------GD--YPHLICYAVKANSNLGVLNTLARLGS-GFDIVSVGELERVLAAGGDP-SKVVFS 127 (441)
T ss_dssp HHHHHHHHHHHHHHT-------TT--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCG-GGEEEC
T ss_pred HHHHHHHHHHHHHhh-------cc--CCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCc-ccEEEc
Confidence 556666666665543 21 258999999999987776655 6787 7877777887643332 222 235788
Q ss_pred ecc-cccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCC------------CCcccccc----
Q 029918 111 GNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EEYGECFI---- 173 (185)
Q Consensus 111 G~L-QsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~------------E~sKsG~~---- 173 (185)
|+. ....++.+++ ..+. +-+|||+..+++|++.+.+.+ ++.+|+|+||++. +.+|.|+.
T Consensus 128 g~~k~~~ei~~a~~--~gv~-~~~vds~~el~~l~~~a~~~~-~~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~~~~~ 203 (441)
T 3n2b_A 128 GVGKTEAEMKRALQ--LKIK-CFNVESEPELQRLNKVAGELG-VKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRA 203 (441)
T ss_dssp CTTCCHHHHHHHHH--TTCS-EEEECSHHHHHHHHHHHHHHT-CCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGH
T ss_pred CCCCCHHHHHHHHH--CCCC-EEEEcCHHHHHHHHHHHHhcC-CCcEEEEEeccCCCcCCCcccccCCCCCcccCCHHHH
Confidence 874 5667888873 2232 359999999999999987765 5789999999863 46899973
Q ss_pred --------cCCcccccccCC
Q 029918 174 --------KCSWSHSCLLMI 185 (185)
Q Consensus 174 --------~~~~l~l~g~m~ 185 (185)
.+|+|++.|||+
T Consensus 204 ~~~~~~~~~~~~l~l~Glh~ 223 (441)
T 3n2b_A 204 AQVYRLAHSLPNLDVHGIDC 223 (441)
T ss_dssp HHHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHhcCCCeEEEEEEE
Confidence 478999999985
No 29
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=97.95 E-value=6.8e-05 Score=65.05 Aligned_cols=132 Identities=8% Similarity=0.001 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|..|++.+++.. | .+++.+|.|..+...|..+ .++|. .|+=-.+.|+..=...=-+.-.++|.|
T Consensus 24 l~~l~~N~~~l~~~~----------~-~~~~~~~vKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~~ 91 (372)
T 2nva_A 24 PKIVEDLIDQWTILF----------P-RVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVSPSRIIFAH 91 (372)
T ss_dssp HHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCCGGGEEECC
T ss_pred HHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCCHHHEEECC
Confidence 666777777765542 2 5899999999987666554 56898 999999999876443311113589999
Q ss_pred cccc-cchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCC------Ccccccc-----------
Q 029918 112 NLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------EYGECFI----------- 173 (185)
Q Consensus 112 ~LQs-NKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E------~sKsG~~----------- 173 (185)
+.++ ..++.+++ ..+.++ +|||+.-+++|++.+. ..+|+|.||++.+ .+|.|+.
T Consensus 92 ~~k~~~~l~~a~~--~~v~~~-~vds~~~l~~l~~~~~-----~~~v~lrv~~~~~~~~~~~~~R~G~~~~~~~~~~~~~ 163 (372)
T 2nva_A 92 TMKTIDDLIFAKD--QGVDIA-TFDSSFELDKIHTYHP-----NCKMILRIRCDDPNATVQLGNKFGANEDEIRHLLEYA 163 (372)
T ss_dssp SCCCHHHHHHHHH--HTCCEE-EECSHHHHHHHHHHCT-----TCEEEEEBCCCCTTCSBCCTTTSSBCGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHH--CCCCEE-EeCCHHHHHHHHHhCC-----CCeEEEEEecCCCCCcccCCCCCCCCHHHHHHHHHHH
Confidence 9865 77888873 224433 9999999999987542 3699999999853 3889973
Q ss_pred -cCCcccccccCC
Q 029918 174 -KCSWSHSCLLMI 185 (185)
Q Consensus 174 -~~~~l~l~g~m~ 185 (185)
.+ +|++.|+|+
T Consensus 164 ~~~-~l~~~Gl~~ 175 (372)
T 2nva_A 164 KQL-DIEVIGISF 175 (372)
T ss_dssp HHT-TCCEEEEEC
T ss_pred HHc-CCeEEEEEE
Confidence 24 788999985
No 30
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=97.61 E-value=0.00019 Score=63.89 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|..|++.+++.. | .+++.+|.|..+...|..+ .++| ..|+=-.+.|+..=...=-+.-+++|.|
T Consensus 62 l~~l~~N~~~l~~~~----------~-~~~i~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~r~~G~~~~~Il~~g 129 (419)
T 2plj_A 62 CDVIRQQYRALKNAL----------P-NVTLHYALKPLPHPVVVRTLLAEG-ASFDLATTGEVELVASEGVPADLTIHTH 129 (419)
T ss_dssp HHHHHHHHHHHHHHS----------T-TEEEEEESTTCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGGEEECC
T ss_pred HHHHHHHHHHHHHhC----------C-CCeEEEEeccCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhEEEeC
Confidence 666777777665532 2 5899999999988776554 4679 7899999999875443211123689999
Q ss_pred cccc-cchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCC------Ccccccc-----------
Q 029918 112 NLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------EYGECFI----------- 173 (185)
Q Consensus 112 ~LQs-NKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E------~sKsG~~----------- 173 (185)
+..+ ..++.+++ ..+. .-+|||+.-+++|++.+. .++|+|.||++.+ .+|.|+.
T Consensus 130 ~~k~~~~l~~a~~--~~v~-~~~vds~~el~~l~~~a~-----~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~ 201 (419)
T 2plj_A 130 PIKRDADIRDALA--YGCN-VFVVDNLNELEKFKAYRD-----DVELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETA 201 (419)
T ss_dssp SSCCHHHHHHHHH--HTCC-EEEECSHHHHHTTGGGTT-----TCEEEEEBCC---------CCCSCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--CCCC-EEEeCCHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHH
Confidence 9754 77888873 1233 379999999999986542 3699999999865 6899973
Q ss_pred -cCCcccccccCC
Q 029918 174 -KCSWSHSCLLMI 185 (185)
Q Consensus 174 -~~~~l~l~g~m~ 185 (185)
.+ +|++.|||+
T Consensus 202 ~~~-~l~l~Gl~~ 213 (419)
T 2plj_A 202 KEW-NIRIKGLSF 213 (419)
T ss_dssp HHT-TCEEEEEEC
T ss_pred HhC-CCcEEEEEE
Confidence 24 789999985
No 31
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=97.12 E-value=0.0031 Score=54.87 Aligned_cols=135 Identities=11% Similarity=0.035 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|..|++.+++.. ++ ..+++.+|.|..+...|..+ .++|. .|+=-.+.|+..=...--+.-+-.|-|
T Consensus 20 l~~l~~N~~~l~~~~-------~~--~~~~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~Il~~~ 89 (386)
T 2yxx_A 20 EETLRKRSRLVKEVF-------EG--VNLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLAAKLAGVPSHTVVWNG 89 (386)
T ss_dssp HHHHHHHHHHHHHHT-------TT--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGEEECC
T ss_pred HHHHHHHHHHHHHhh-------cc--CCceEEEEEeeCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCChhhEEEeC
Confidence 666777777765543 11 25799999999988776655 46899 999999999976443321112256888
Q ss_pred cc-cccchHHHhhcCCCccE-EEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCC------------Ccccccc----
Q 029918 112 NL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------------EYGECFI---- 173 (185)
Q Consensus 112 ~L-QsNKvk~~~~~~~~~~~-IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E------------~sKsG~~---- 173 (185)
+. ....++.+++ ..+ .=+|||+.-+++|++.+.+ +.+|+|.||.+.. .+|.|+.
T Consensus 90 ~~k~~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~~~~~ 161 (386)
T 2yxx_A 90 NGKSRDQMEHFLR----EDVRIVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDL 161 (386)
T ss_dssp SCCCHHHHHHHHH----TTCCEEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGH
T ss_pred CCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcCc----CCeEEEEECCCCCCCCCcccccCCCCCCCCCChhHH
Confidence 85 6667887773 334 5689999999999876531 5799999998754 3788883
Q ss_pred -----cCCcccccccCC
Q 029918 174 -----KCSWSHSCLLMI 185 (185)
Q Consensus 174 -----~~~~l~l~g~m~ 185 (185)
.+++|++.|+|+
T Consensus 162 ~~~~~~~~~l~~~Gl~~ 178 (386)
T 2yxx_A 162 DSFMERFRSMNIRGLHV 178 (386)
T ss_dssp HHHHHHHTTSCEEEEEC
T ss_pred HHHhhccCCCcEEEEEE
Confidence 367888999875
No 32
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=97.06 E-value=0.0042 Score=55.45 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhc-CCCCceEEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLEWHFI 110 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~-L~~~i~WHfI 110 (185)
.+.|..|++.+++.+ | .+++.++.|..+...|..++ ++|. .|.=--..|+..=... +++ -+-+|-
T Consensus 45 l~~l~~n~~~~~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~-~~Ii~~ 111 (424)
T 7odc_A 45 LGDILKKHLRWLKAL----------P-RVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVPA-ERVIYA 111 (424)
T ss_dssp HHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCG-GGEEEC
T ss_pred HHHHHHHHHHHHHhC----------C-CCeEEEEeccCCcHHHHHHHHHcCC-cEEECCHHHHHHHHHcCCCh-hhEEEC
Confidence 666777777776543 2 68999999999988876665 5786 7777777777653332 322 245788
Q ss_pred eccccc-chHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCC------CCcccccc----------
Q 029918 111 GNLQSN-KVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------EEYGECFI---------- 173 (185)
Q Consensus 111 G~LQsN-Kvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~------E~sKsG~~---------- 173 (185)
|+..+. .++.+++ ..+.++ +|||+.-+++|++.+. ..+|+|.||+.. ..+|.|+.
T Consensus 112 g~~k~~~ei~~a~~--~gv~~~-~vds~~el~~l~~~~~-----~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~~~~ 183 (424)
T 7odc_A 112 NPCKQVSQIKYAAS--NGVQMM-TFDSEIELMKVARAHP-----KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLER 183 (424)
T ss_dssp CSSCCHHHHHHHHH--TTCCEE-EECSHHHHHHHHHHCT-----TCEEEEEBCC-----------CCCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--CCCCEE-EeCCHHHHHHHHHhCC-----CCeEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 987655 6887773 224433 8999999999987642 469999999852 35889973
Q ss_pred -cCCcccccccCC
Q 029918 174 -KCSWSHSCLLMI 185 (185)
Q Consensus 174 -~~~~l~l~g~m~ 185 (185)
.-++|.+.|||+
T Consensus 184 ~~~~~l~l~Glh~ 196 (424)
T 7odc_A 184 AKELNIDVIGVSF 196 (424)
T ss_dssp HHHTTCEEEEEEC
T ss_pred HHhCCCCEEEEEE
Confidence 124788999874
No 33
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=96.88 E-value=0.004 Score=55.81 Aligned_cols=131 Identities=7% Similarity=-0.096 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|.+|++.+++.... ..+++..+.|..|...|..++ +.|.- |.=--..|+..=...+| -+++|.|
T Consensus 51 ~~~l~~n~~~l~~~~~~---------~~~~i~yAvKAN~~~~vl~~l~~~G~G-~dvaS~~El~~a~~~~~--~~Ii~~~ 118 (418)
T 3n29_A 51 EDKLRKNCELLASVGEK---------SGAKVLLALKGFAFSGAMKIVGEYLKG-CTCSGLWEAKFAKEYMD--KEIHTYS 118 (418)
T ss_dssp HHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHHHHSCE-EEESSHHHHHHHHHHTC--SEEEEEE
T ss_pred HHHHHHHHHHHHHhhhh---------cCCEEEEEEccCCCHHHHHHHHHcCCe-EEECCHHHHHHHHhhCC--CCEEEEC
Confidence 66778888887665532 158999999999987776655 44542 55444555543333344 4789999
Q ss_pred cccccc-hHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCC------------CCCcccccc--cCC
Q 029918 112 NLQSNK-VKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEEYGECFI--KCS 176 (185)
Q Consensus 112 ~LQsNK-vk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis------------~E~sKsG~~--~~~ 176 (185)
+..+.. ++.++. .-..| +|||+.-+++|++.+. ..+|+|.||.. +..+|.|+. +++
T Consensus 119 ~~k~~~el~~A~~---~g~~i-~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~~~~ 189 (418)
T 3n29_A 119 PAFKEDEIGEIAS---LSHHI-VFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFE 189 (418)
T ss_dssp SSCCHHHHHHHHH---HCSEE-EESSHHHHHHHGGGCT-----TSEEEEEBCCCCC----------CTTCCSSBCGGGGT
T ss_pred CCCCHHHHHHHHH---cCCeE-EECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHHHHH
Confidence 987665 777763 22245 8999999999987543 47999999864 456899973 222
Q ss_pred --cc-cccccC
Q 029918 177 --WS-HSCLLM 184 (185)
Q Consensus 177 --~l-~l~g~m 184 (185)
.| .+.||+
T Consensus 190 ~~~l~~l~Glh 200 (418)
T 3n29_A 190 NVDLNAIEGLH 200 (418)
T ss_dssp TCCCTTCCEEE
T ss_pred HhhcCceEEEE
Confidence 23 567765
No 34
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=96.64 E-value=0.03 Score=53.59 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCCc-ccccccHHHHHHHHhc-CCCCceEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHR-CFGENYVQEIVEKAAQ-LPDDLEWHF 109 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~r-~FGENrvQEl~~K~~~-L~~~i~WHf 109 (185)
.+.|.+|++.+++....+....+- +..+++..+.|..+...|... .++|.. .|.=--..|+..=... .+++-.-.|
T Consensus 93 ~d~Lr~ni~~l~~af~~a~~~~~Y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~iIv~ 171 (666)
T 3nzq_A 93 PQILQHRLRSINAAFKRARESYGY-NGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVC 171 (666)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhHHhhcc-cCCeEEEEEEeeCChHHHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcEEEE
Confidence 777888888888877666555442 356899999999997666555 456764 5555566666543332 333222233
Q ss_pred EecccccchHHHhhc-CCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeC-----------CCCCcccccc----
Q 029918 110 IGNLQSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-----------SGEEYGECFI---- 173 (185)
Q Consensus 110 IG~LQsNKvk~~~~~-~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNi-----------s~E~sKsG~~---- 173 (185)
=|.-...-++.++.. ...+.++=+|||+.-+++|++.+.+.+ .+.+|+|.||. +++.+|.|+.
T Consensus 172 nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g-~~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~e~ 250 (666)
T 3nzq_A 172 NGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLN-VVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQV 250 (666)
T ss_dssp CSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTT-CCCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHHH
T ss_pred cCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcC-CCceEEEEEEecCCCCcCccccCCCCCcCcCCHHHH
Confidence 352111113444310 001344458999999999999988765 57899999975 3467899973
Q ss_pred --------cCCccc-ccccCC
Q 029918 174 --------KCSWSH-SCLLMI 185 (185)
Q Consensus 174 --------~~~~l~-l~g~m~ 185 (185)
.++.|. +.||++
T Consensus 251 ~~ll~~l~~~~~L~~l~GLHf 271 (666)
T 3nzq_A 251 LQLVETLREAGRLDSLQLLHF 271 (666)
T ss_dssp HHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHhCCCCCCeEEEEE
Confidence 478886 888863
No 35
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=96.37 E-value=0.077 Score=50.25 Aligned_cols=148 Identities=8% Similarity=0.042 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHH-HHHcCCc---ccccccHHHHHHHHhcCCCCceEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHR---CFGENYVQEIVEKAAQLPDDLEWH 108 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~-a~~~G~r---~FGENrvQEl~~K~~~L~~~i~WH 108 (185)
.+.|.+|++.+++....+....+- +..++++.+.|..|...|.. +.++|.. .|.=--..|+..=...-.++..-.
T Consensus 52 ~d~L~~ni~~l~~af~~a~~~~~y-~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~Iv 130 (619)
T 3nzp_A 52 PHLIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPIT 130 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-CSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc-CCCEEEEEEEeccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCEEE
Confidence 777899999998888777666553 35799999999999766554 4566752 444455666654333322222223
Q ss_pred EEecccccchHHHhh-cC----CCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeC-----------CCCCccccc
Q 029918 109 FIGNLQSNKVKPLLA-GV----PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-----------SGEEYGECF 172 (185)
Q Consensus 109 fIG~LQsNKvk~~~~-~~----~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNi-----------s~E~sKsG~ 172 (185)
|=| +|-...++ .+ ....++=+|||+.-+++|++.+.+.+..+.+|+|.||. +++.+|.|+
T Consensus 131 ~nG----~K~~e~I~~Al~a~~~g~~v~ivVDS~~ELe~l~~~a~~~g~~~~~V~LRInp~~~g~~~~~~TGg~~sKFGi 206 (619)
T 3nzp_A 131 VNG----FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGL 206 (619)
T ss_dssp ECS----CCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCCTTC-------------CCSB
T ss_pred eCC----CCCHHHHHHHHhhhhcCCcEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEEecCCCCCcccccCCCCCccCcC
Confidence 434 35333221 00 11334558999999999999987654147899999996 345689997
Q ss_pred c------------cCCcc-cccccCC
Q 029918 173 I------------KCSWS-HSCLLMI 185 (185)
Q Consensus 173 ~------------~~~~l-~l~g~m~ 185 (185)
. .++.| .+.||++
T Consensus 207 ~~ee~~~ll~~l~~~~~L~~l~GLHf 232 (619)
T 3nzp_A 207 TSTELIEAVNLLKENKLLEQFTMIHF 232 (619)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCCceeEEEE
Confidence 3 47777 5889874
No 36
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=96.13 E-value=0.029 Score=48.85 Aligned_cols=131 Identities=5% Similarity=-0.054 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCCceEEEEe
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~L~~~i~WHfIG 111 (185)
.+.|.+|++.+++.... ..+++..+.|..|...|..++ ++|. .|.=--..|+..=...+| -+++|.|
T Consensus 11 ~~~l~~n~~~l~~~~~~---------~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~~~--~~ii~~~ 78 (365)
T 3mt1_A 11 KAKLTRNMERIAHVREK---------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFG--KETHAYS 78 (365)
T ss_dssp HHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHTTTSC-EEEESSHHHHHHHHHHTC--SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhh---------cCCEEEEEehhcCCHHHHHHHHHhCC-eEEECCHHHHHHHHhhCC--CceEEEC
Confidence 56677888887765532 148999999999988777665 4565 365555566553333354 3789999
Q ss_pred cccccc-hHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCC------------CCCccccccc--CC
Q 029918 112 NLQSNK-VKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEEYGECFIK--CS 176 (185)
Q Consensus 112 ~LQsNK-vk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis------------~E~sKsG~~~--~~ 176 (185)
+..+.. ++.++. .-..| +|||+.-+++|++.+.+ .+|+|-||.. ...+|.|+.. ++
T Consensus 79 ~~k~~~el~~a~~---~g~~i-~vds~~el~~l~~~a~~-----~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~ 149 (365)
T 3mt1_A 79 VAYGDNEIDEVVS---HADKI-IFNSISQLERFADKAAG-----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKV 149 (365)
T ss_dssp SCCCTTTHHHHHH---HCSEE-EESSHHHHHHHGGGGTT-----SEEEEEECCC----------------CCSBCCHHHH
T ss_pred CCCCHHHHHHHHH---cCCEE-EECCHHHHHHHHHHhcc-----CCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHh
Confidence 987654 887773 22245 89999999999876642 5888988863 3458888731 11
Q ss_pred --cc-cccccC
Q 029918 177 --WS-HSCLLM 184 (185)
Q Consensus 177 --~l-~l~g~m 184 (185)
.| .+.||+
T Consensus 150 ~~~l~~~~Glh 160 (365)
T 3mt1_A 150 ERVMDRINGFM 160 (365)
T ss_dssp HTTGGGCSEEE
T ss_pred hhccCCeEEEE
Confidence 23 566764
No 37
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=96.01 E-value=0.065 Score=51.10 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCC------cccccccHHHHHHHHhc-CCCC
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGH------RCFGENYVQEIVEKAAQ-LPDD 104 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~------r~FGENrvQEl~~K~~~-L~~~ 104 (185)
.+.|.+|++.+++....+....+- +..++++.+.|..|...|... .++|. .-|.=--..|+..=... ++++
T Consensus 71 ~d~L~~ni~~l~~af~~a~~~~~y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~e 149 (648)
T 3n2o_A 71 PQILHQRVHSICDAFNQAIEEYQY-PNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHAS 149 (648)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-SSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-cCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCCC
Confidence 777888998888887766554442 356899999999998776554 45652 33444445666543333 3432
Q ss_pred ceEEEEecccccchHHHhhc-CCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeC-----------CCCCccccc
Q 029918 105 LEWHFIGNLQSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-----------SGEEYGECF 172 (185)
Q Consensus 105 i~WHfIG~LQsNKvk~~~~~-~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNi-----------s~E~sKsG~ 172 (185)
-.-.|=|.-...-++.++.. .....++=+|||+.-++.|++.+.+.+ .+.+|+|.||. +++.+|.|+
T Consensus 150 ~iIv~nG~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g-~~~~V~LRInp~~~~~~~~i~TGg~~SKFGi 228 (648)
T 3n2o_A 150 SVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLG-VTPRLGIRIRLASQGAGKWQASGGEKSKFGL 228 (648)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHT-CCCEEEEEBCCSTTSTTTTCSSSSCCCCCCB
T ss_pred cEEEecCCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEEECCCCCCCCccccCCCCCcCcC
Confidence 22334352111123434310 001334458999999999999988765 57899999985 457789997
Q ss_pred c------------cCCccc-ccccCC
Q 029918 173 I------------KCSWSH-SCLLMI 185 (185)
Q Consensus 173 ~------------~~~~l~-l~g~m~ 185 (185)
. .++.|. +.||+.
T Consensus 229 ~~~e~~~ll~~l~~~~~L~~l~GLHf 254 (648)
T 3n2o_A 229 SASQVLNVISRLKKENQLDTLQLVHF 254 (648)
T ss_dssp CHHHHHHHHHHHHHTTCGGGEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 3 477886 888863
No 38
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=95.35 E-value=0.11 Score=45.85 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHH-HHcCCcccccccHHHHHHHHhc-CCCCceEEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQ-LPDDLEWHFI 110 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a-~~~G~r~FGENrvQEl~~K~~~-L~~~i~WHfI 110 (185)
.+.|..|++.+++.+ | .+++.+|.|..+...|..+ .++| ..|+=-.+.|+..=... ++.+ .-.|=
T Consensus 45 l~~l~~n~~~~~~~~----------~-~~~~~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~-~iv~~ 111 (425)
T 1f3t_A 45 LGDIVRKHETWKKCL----------P-RVTPFYAVKCNDDWRVLGTLAALG-TGFDCASNTEIQRVRGIGVPPE-KIIYA 111 (425)
T ss_dssp HHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHTT-CEEEECSHHHHHHHHHTTCCGG-GEEEC
T ss_pred HHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChh-hEEEc
Confidence 666777777665432 2 5899999999997776655 4678 78999999998754443 2222 24455
Q ss_pred ecc-cccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCC------Ccccccc----------
Q 029918 111 GNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------EYGECFI---------- 173 (185)
Q Consensus 111 G~L-QsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E------~sKsG~~---------- 173 (185)
|+. ....++.+++ ..+. .=+|||+.-++.|++.+ .+.+|+|.||++.. .+|.|+.
T Consensus 112 g~~k~~~~l~~a~~--~gv~-~~~vds~~el~~l~~~~-----~~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~~~~~~ 183 (425)
T 1f3t_A 112 NPCKQISHIRYARD--SGVD-VMTFDCVDELEKVAKTH-----PKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQ 183 (425)
T ss_dssp CSSCCHHHHHHHHH--TTCC-EEEECSHHHHHHHHHHC-----TTCEEEEEBCC----------CCSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--CCCC-EEEeCCHHHHHHHHHhC-----CCCcEEEEEcCCCCCccCCCCCcCCCCHHHHHHHHHH
Confidence 664 3345776763 1222 46899999999998653 25799999998633 5788872
Q ss_pred --cCCcccccccCC
Q 029918 174 --KCSWSHSCLLMI 185 (185)
Q Consensus 174 --~~~~l~l~g~m~ 185 (185)
.+ +|.+.|||+
T Consensus 184 ~~~~-~l~~~Gl~~ 196 (425)
T 1f3t_A 184 AKKL-NIDVTGVSF 196 (425)
T ss_dssp HHHT-TCEEEEEEC
T ss_pred HHhC-CCeEEEEEE
Confidence 23 788889875
No 39
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=94.28 E-value=0.26 Score=44.08 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhc-CCCCceEEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLEWHFI 110 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~-L~~~i~WHfI 110 (185)
.+.|..|++.+++.. | .+++.+|.|..+...|..++ ++|. .|+=-.+.|+..=... ++.+ .-.|-
T Consensus 45 ~~~l~~n~~~~~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G~-g~~vaS~~E~~~~~~aG~~~~-~iv~~ 111 (448)
T 3btn_A 45 LGKIVKKHSQWQTVV----------A-QIKPFYTVKCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVSPE-NIIFT 111 (448)
T ss_dssp HHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHTC-EEEESSHHHHHHHHHTTCCGG-GEEEC
T ss_pred HHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCChh-hEEEc
Confidence 666777776665432 2 48999999999987766655 6784 8988899998765443 3322 23455
Q ss_pred ecc-cccchHHHhhcCCCccE-EEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCC------Ccccccc---------
Q 029918 111 GNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------EYGECFI--------- 173 (185)
Q Consensus 111 G~L-QsNKvk~~~~~~~~~~~-IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E------~sKsG~~--------- 173 (185)
|+. ...-++.+++ ..+ .=+|||+.-+++|++.+ .+.+|+|-||++.. .+|.|+.
T Consensus 112 g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~-----~~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~~~~~ 182 (448)
T 3btn_A 112 SPCKQVSQIKYAAK----VGVNIMTCDNEIELKKIARNH-----PNAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLE 182 (448)
T ss_dssp CSSCCHHHHHHHHH----HTCCEEEECSHHHHHHHHHHC-----TTCEEEEEBCCCC--------CCCCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHhC-----CCCeEEEEEecCCCccCCCCCCcCCCCHHHHHHHHH
Confidence 654 3334555552 222 45899999999988653 25799999999754 6889973
Q ss_pred ---cCCcccccccCC
Q 029918 174 ---KCSWSHSCLLMI 185 (185)
Q Consensus 174 ---~~~~l~l~g~m~ 185 (185)
.+ +|++.|||+
T Consensus 183 ~~~~~-~l~~~Gl~~ 196 (448)
T 3btn_A 183 CAKEL-DVQIIGVKF 196 (448)
T ss_dssp HHHHH-TCEEEEEEC
T ss_pred HHHhC-CCCEEEEEE
Confidence 13 788888874
No 40
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=94.10 E-value=0.51 Score=42.60 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHH-HcCCcccccccHHHHHHHHhc-CCCCceEEEE
Q 029918 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQ-LPDDLEWHFI 110 (185)
Q Consensus 33 ~~~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~-~~G~r~FGENrvQEl~~K~~~-L~~~i~WHfI 110 (185)
.+.|..|++.+++.+ | .+++.+|.|..+...|..++ ++| ..|+=-...|+..=... ++.+ .-.|-
T Consensus 55 l~~l~~n~~~l~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G-~g~dvaS~~E~~~~~~aG~~~~-~iv~~ 121 (471)
T 2oo0_A 55 LGDILKKHLRWLKAL----------P-RVTPFYAVKCNDSKAIVKTLAATG-TGFDCASKTEIQLVQSLGVPPE-RIIYA 121 (471)
T ss_dssp HHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGG-GEEEC
T ss_pred HHHHHHHHHHHHHhC----------C-CCeEEEEEeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChh-hEEEe
Confidence 566677776665432 2 58999999999987766655 678 78998999998755443 3322 23455
Q ss_pred ecc-cccchHHHhhcCCCccEEEecCcHHHHHHHHHHHHhcCCCCccEEEEEeCCCC------Ccccccc----------
Q 029918 111 GNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------EYGECFI---------- 173 (185)
Q Consensus 111 G~L-QsNKvk~~~~~~~~~~~IhSVDs~kLA~~L~k~a~~~~~~~l~VLIQVNis~E------~sKsG~~---------- 173 (185)
|+. ...-++.+++ ..+. .=+|||+.-+++|++.+ ...+|+|-||++.. .+|.|+.
T Consensus 122 g~~k~~~ei~~a~~--~gv~-~~~vds~~el~~l~~~~-----~~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~~~~~~ 193 (471)
T 2oo0_A 122 NPCKQVSQIKYAAN--NGVQ-MMTFDSEVELMKVARAH-----PKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLER 193 (471)
T ss_dssp CSSCCHHHHHHHHH--TTCC-EEEECSHHHHHHHHHHC-----TTCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--CCCC-EEEECCHHHHHHHHHhC-----CCCeEEEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 654 3334666652 1232 36899999999998653 25799999998633 5788873
Q ss_pred --cCCcccccccCC
Q 029918 174 --KCSWSHSCLLMI 185 (185)
Q Consensus 174 --~~~~l~l~g~m~ 185 (185)
.+ +|.+.|||+
T Consensus 194 ~~~~-~l~l~Glh~ 206 (471)
T 2oo0_A 194 AKEL-NIDVVGVSF 206 (471)
T ss_dssp HHHT-TCEEEEEEE
T ss_pred HHhC-CCcEEEEEE
Confidence 23 788888874
No 41
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=91.20 E-value=0.95 Score=39.90 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=78.0
Q ss_pred EEEEeecCCCHHHHHH-HHHcCCcccccccHHHHHHHHhc-CCCC---ceEEEEec-ccccchHHHhhcCCCccEEEecC
Q 029918 62 RIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQ-LPDD---LEWHFIGN-LQSNKVKPLLAGVPNLAMVESVD 135 (185)
Q Consensus 62 ~LvAVSKt~p~e~I~~-a~~~G~r~FGENrvQEl~~K~~~-L~~~---i~WHfIG~-LQsNKvk~~~~~~~~~~~IhSVD 135 (185)
++.+|.|..+...|.. +.++|. .|+=-.+.|+..=... ++.. -.-.|-|+ .....++.+++ ..+.=+||
T Consensus 48 ~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~~~~~Iv~~g~~k~~~~l~~a~~----~~i~~~vd 122 (425)
T 1knw_A 48 VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSE----LQIPVNAG 122 (425)
T ss_dssp EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHH----HTCCEEES
T ss_pred cceEeeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCCCCCCcCeEEEECCCCCHHHHHHHHH----cCCEEEEC
Confidence 8899999998766655 456786 5999999998765443 2320 12446676 34455777763 22336899
Q ss_pred cHHHHHHHHHHHHhcCCCCccEEEEEeCC------------CCCcccccc------------cCCcccccccCC
Q 029918 136 NEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEEYGECFI------------KCSWSHSCLLMI 185 (185)
Q Consensus 136 s~kLA~~L~k~a~~~~~~~l~VLIQVNis------------~E~sKsG~~------------~~~~l~l~g~m~ 185 (185)
|+.-++.|++.+. ..+|.|.||.. +..+|.|+. .+ +|.+.|||+
T Consensus 123 s~~el~~l~~~a~-----~~~v~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~~~~~~~~~~~~~-~l~l~Gl~~ 190 (425)
T 1knw_A 123 SVDMLDQLGQVSP-----GHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRH-HLQLVGIHM 190 (425)
T ss_dssp SHHHHHHHHHHST-----TCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHHHT-TCEEEEEEC
T ss_pred CHHHHHHHHHhhh-----hccEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHHHC-CCCEEEEEE
Confidence 9999999987653 24899999854 346888872 25 788889875
No 42
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=64.08 E-value=23 Score=30.44 Aligned_cols=87 Identities=10% Similarity=0.226 Sum_probs=62.7
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCC------------------------cccccccHHHHHHHHhcCCCCceEEEE-eccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGH------------------------RCFGENYVQEIVEKAAQLPDDLEWHFI-GNLQ 114 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~------------------------r~FGENrvQEl~~K~~~L~~~i~WHfI-G~LQ 114 (185)
.|-|+++. ....+.+..+..+|+ .++|.|+++.+.+++..+.+.+.++.+ +.+.
T Consensus 38 ~VlivG~G-GlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~ 116 (346)
T 1y8q_A 38 RVLLVGLK-GLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIE 116 (346)
T ss_dssp EEEEECCS-HHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGG
T ss_pred eEEEECCC-HHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecccC
Confidence 45555542 445555566666665 456899999999999999777777765 4555
Q ss_pred ccchHHHhhcCCCcc-EEEecCcHHHHHHHHHHHHhcC
Q 029918 115 SNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMG 151 (185)
Q Consensus 115 sNKvk~~~~~~~~~~-~IhSVDs~kLA~~L~k~a~~~~ 151 (185)
.+ ...++ ..++ +|-+.|+...-..|+..|.+.+
T Consensus 117 ~~-~~~~~---~~~dvVv~~~d~~~~r~~ln~~~~~~~ 150 (346)
T 1y8q_A 117 KK-PESFF---TQFDAVCLTCCSRDVIVKVDQICHKNS 150 (346)
T ss_dssp GC-CHHHH---TTCSEEEEESCCHHHHHHHHHHHHHTT
T ss_pred cc-hHHHh---cCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 53 45566 4566 5789999999999999998753
No 43
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=46.86 E-value=31 Score=28.03 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=47.1
Q ss_pred ccccccHHHHHHHHhcCCCCceEEEEe-cccccchHHHhhcCCCcc-EEEecCcHHHHHHHHHHHHhcC
Q 029918 85 CFGENYVQEIVEKAAQLPDDLEWHFIG-NLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMG 151 (185)
Q Consensus 85 ~FGENrvQEl~~K~~~L~~~i~WHfIG-~LQsNKvk~~~~~~~~~~-~IhSVDs~kLA~~L~k~a~~~~ 151 (185)
++|.++++.+.+++..+.+++++..+- .+-...+..++ ..+| +|.+.|+...-..|++.|.+.+
T Consensus 78 diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~---~~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 78 DIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV---ARADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp GTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH---HHCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH---hcCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 458899999999999886677777653 34333455566 3456 5678999998889999998754
No 44
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=37.83 E-value=58 Score=26.29 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCcccccccHHHHHHHHhcCCCCceEEEEe-cccccchHHHhhcCCCcc-EEEecCcHHHHHHHHHHHHhcC
Q 029918 82 GHRCFGENYVQEIVEKAAQLPDDLEWHFIG-NLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMG 151 (185)
Q Consensus 82 G~r~FGENrvQEl~~K~~~L~~~i~WHfIG-~LQsNKvk~~~~~~~~~~-~IhSVDs~kLA~~L~k~a~~~~ 151 (185)
...++|.++++.+.+++..+.+++.+..+- .+....+..++ ..+| +|-+.|+...-..|++.|.+.+
T Consensus 78 ~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~---~~~DvVi~~~d~~~~~~~l~~~~~~~~ 146 (249)
T 1jw9_B 78 SDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI---AEHDLVLDCTDNVAVRNQLNAGCFAAK 146 (249)
T ss_dssp CGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH---HTSSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred ChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH---hCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 344678899999999998876666666542 34333345555 3455 6789999998888999887654
No 45
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=36.91 E-value=28 Score=23.78 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=24.4
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-..+.+.+..++.+|...|
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 105 (137)
T 3hdg_A 78 AKPYVIVISAFSEMKYFIKAIELGVHLF 105 (137)
T ss_dssp CCCEEEECCCCCCHHHHHHHHHHCCSEE
T ss_pred CCCcEEEEecCcChHHHHHHHhCCccee
Confidence 4678999999999999999999998754
No 46
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=36.64 E-value=47 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++.+|...|
T Consensus 80 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 107 (136)
T 3hdv_A 80 AALSIIVVSGDTDVEEAVDVMHLGVVDF 107 (136)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEeCCCChHHHHHHHhCCcceE
Confidence 4688999999999999999999998754
No 47
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=36.09 E-value=40 Score=23.06 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=23.8
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-..+.+.+..++++|...|
T Consensus 88 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 115 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFESLNIRGH 115 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHTTTTCCEE
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcCCCeE
Confidence 4678899999999999999999998764
No 48
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=35.69 E-value=31 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 101 (126)
T 1dbw_A 75 NIPSIVITGHGDVPMAVEAMKAGAVDF 101 (126)
T ss_dssp CCCEEEEECTTCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHhCHHHh
Confidence 577899999999999999999998764
No 49
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.12 E-value=32 Score=23.64 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=24.3
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++++|...|
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~ 106 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVRAMRASAADF 106 (136)
T ss_dssp CCCCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcChHHh
Confidence 3578999999999999999999998764
No 50
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=33.69 E-value=41 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCcccccc--cHHHHHHHHh
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCFGEN--YVQEIVEKAA 99 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~FGEN--rvQEl~~K~~ 99 (185)
..+.+|.+|-....+.+..++.+|...|=.- ..+++.....
T Consensus 93 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~ 135 (150)
T 4e7p_A 93 LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLH 135 (150)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHH
Confidence 4678999999999999999999998754221 3444444443
No 51
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=32.68 E-value=58 Score=29.85 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCCceEEEE-ecccc--cchHHHhhcCCCcc-EEEecCcHHHHHHHHH
Q 029918 70 KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI-GNLQS--NKVKPLLAGVPNLA-MVESVDNEKIAGRLNR 145 (185)
Q Consensus 70 ~p~e~I~~a~~~G~r~FGENrvQEl~~K~~~L~~~i~WHfI-G~LQs--NKvk~~~~~~~~~~-~IhSVDs~kLA~~L~k 145 (185)
...+.+..-+-.+..++|.|+++.+.+++..+.+++.++.+ +.+.. .....++ ..++ +|-+.|+...-..|++
T Consensus 67 Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~---~~~DvVi~~~d~~~~r~~ln~ 143 (531)
T 1tt5_A 67 VSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFF---CRFTVVVATQLPESTSLRLAD 143 (531)
T ss_dssp BCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGG---GGCSEEEEESCCHHHHHHHHH
T ss_pred echhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHh---cCCCEEEEeCCCHHHHHHHHH
Confidence 33333333233345678999999999999999766665544 23322 1222344 3455 5789999999999999
Q ss_pred HHHhcC
Q 029918 146 MVETMG 151 (185)
Q Consensus 146 ~a~~~~ 151 (185)
.|...+
T Consensus 144 ~c~~~~ 149 (531)
T 1tt5_A 144 VLWNSQ 149 (531)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 998754
No 52
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.56 E-value=36 Score=22.93 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.6
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~~~g~~~~ 105 (130)
T 3eod_A 79 QTPVLVISATENMADIAKALRLGVEDV 105 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHCCSEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCCEE
Confidence 577899999999999999999998754
No 53
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=32.39 E-value=54 Score=22.30 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-..+.+.+..++++|...|
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~ 118 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICYSYSISSY 118 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCCEE
Confidence 4578889999999999999999998765
No 54
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=31.70 E-value=30 Score=22.93 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=23.3
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEAIKAGAKDF 101 (120)
T ss_dssp TCCEEEEECTTCHHHHHHHHHTTCCEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHhCccee
Confidence 567899999999999999999998765
No 55
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=31.46 E-value=49 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=28.8
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCcccc--cccHHHHHHHHh
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFG--ENYVQEIVEKAA 99 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~FG--ENrvQEl~~K~~ 99 (185)
.+.+|.+|-....+.+..++.+|...|= .-..+++.....
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~ 118 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETIN 118 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 6889999999999999999999987652 122445544443
No 56
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=31.23 E-value=36 Score=23.38 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=23.6
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 103 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEY 103 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHhCccee
Confidence 578899999999999999999998754
No 57
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=31.17 E-value=48 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++++|...|
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 115 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGF 115 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEE
Confidence 3578999999999999999999998754
No 58
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.48 E-value=37 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=23.7
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-....+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 101 (132)
T 3crn_A 75 GMKKIMVTGYASLENSVFSLNAGADAY 101 (132)
T ss_dssp TSEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeccccHHHHHHHHhccchhh
Confidence 578899999999999999999998765
No 59
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=29.52 E-value=1.2e+02 Score=21.88 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHH-cCCcccc
Q 029918 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYE-AGHRCFG 87 (185)
Q Consensus 36 i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~-~G~r~FG 87 (185)
+...++.|...-...|..++| ||..+++|..|+. .|...||
T Consensus 58 le~fi~~I~~dA~~~a~HakR-----------KTVt~~DV~~ALkr~g~~lYG 99 (102)
T 1id3_B 58 LKSFLESVIRDSVTYTEHAKR-----------KTVTSLDVVYALKRQGRTLYG 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHHHHTTCCEES
T ss_pred HHHHHHHHHHHHHHHHHHcCC-----------CcCcHHHHHHHHHHcCCCCCC
Confidence 344555666666666777787 5788999999887 5777776
No 60
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.34 E-value=59 Score=22.30 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|++|-....+.+..++++|...|
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~ga~~~ 107 (144)
T 3kht_A 80 QHTPIVILTDNVSDDRAKQCMAAGASSV 107 (144)
T ss_dssp TTCCEEEEETTCCHHHHHHHHHTTCSEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 3578999999999999999999998765
No 61
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.23 E-value=47 Score=21.87 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=23.1
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+....++++|...|
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 98 (121)
T 2pl1_A 72 SLPILVLTARESWQDKVEVLSAGADDY 98 (121)
T ss_dssp CSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEecCCCHHHHHHHHHcCccce
Confidence 577888999889999999999998765
No 62
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=29.23 E-value=41 Score=22.42 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1srr_A 75 NIRVIIMTAYGELDMIQESKELGALTH 101 (124)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHTCCCE
T ss_pred CCCEEEEEccCchHHHHHHHhcChHhh
Confidence 578899999999999999999997654
No 63
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=28.70 E-value=74 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=23.3
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 73 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 99 (122)
T 1zgz_A 73 TVGIILVTGRSDRIDRIVGLEMGADDY 99 (122)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred CCCEEEEECCCChhhHHHHHHhCHHHH
Confidence 477899999889999999999998765
No 64
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=28.66 E-value=77 Score=21.38 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-..+.+.+..++++|...|
T Consensus 83 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 110 (143)
T 3cnb_A 83 ANIIVIAMTGALTDDNVSRIVALGAETC 110 (143)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcCCcEE
Confidence 3588999999999999999999998764
No 65
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.59 E-value=57 Score=22.46 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=23.2
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 76 ~~~ii~ls~~~~~~~~~~~~~~ga~~~ 102 (137)
T 3cfy_A 76 PTSVIIATAHGSVDLAVNLIQKGAEDF 102 (137)
T ss_dssp CCEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCCEEEEEecCcHHHHHHHHHCCccEE
Confidence 578899999999999999999998754
No 66
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=27.25 E-value=45 Score=22.80 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=23.7
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++.+|...|
T Consensus 75 ~~pii~ls~~~~~~~~~~~~~~g~~~~ 101 (142)
T 2qxy_A 75 DTKVAVLSAYVDKDLIINSVKAGAVDY 101 (142)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHTCSCE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCccee
Confidence 588999999999999999999998764
No 67
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=27.11 E-value=69 Score=21.75 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.8
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 112 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDY 112 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCcee
Confidence 578999999999999999999998764
No 68
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.77 E-value=68 Score=22.01 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++++|..+|
T Consensus 81 ~~~pii~ls~~~~~~~~~~~~~~g~~~~ 108 (147)
T 2zay_A 81 ASIPVIALSGRATAKEEAQLLDMGFIDF 108 (147)
T ss_dssp TTSCEEEEESSCCHHHHHHHHHHTCSEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCCCEE
Confidence 3578899999999999999999998765
No 69
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=26.30 E-value=1.8e+02 Score=21.86 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHH-cCCccccc
Q 029918 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYE-AGHRCFGE 88 (185)
Q Consensus 36 i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~-~G~r~FGE 88 (185)
+...++.|.......+.-+|| ||..+++|.-|+. .|...+|-
T Consensus 77 l~~~l~~i~rdav~yaehA~R-----------KTVta~DV~~Alkr~G~~lygf 119 (121)
T 2ly8_A 77 LKSFLESVIRDSVTYTEHAKR-----------KTVTSLDVVYALKRQGRTLYGF 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHHHHTTCGGGGC
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----------CcCcHHHHHHHHHhCCCcCCCC
Confidence 344455555555566677787 6999999999987 68887774
No 70
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.15 E-value=80 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.9
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-+-..+.+..++++|...|
T Consensus 75 ~~~pii~~s~~~~~~~~~~~~~~Ga~~~ 102 (122)
T 3gl9_A 75 KRIPVIVLTAKGGEEDESLALSLGARKV 102 (122)
T ss_dssp TTSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred cCCCEEEEecCCchHHHHHHHhcChhhh
Confidence 3577889999889999999999998765
No 71
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=25.94 E-value=41 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.2
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++.+|...|
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 105 (153)
T 3cz5_A 79 AARILIFTMHQGSAFALKAFEAGASGY 105 (153)
T ss_dssp TCCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCcEE
Confidence 567899999999999999999998764
No 72
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=25.44 E-value=1.5e+02 Score=21.17 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHH-cCCccccc
Q 029918 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYE-AGHRCFGE 88 (185)
Q Consensus 35 ~i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~-~G~r~FGE 88 (185)
.+...++.|.+.-...|..++| ||..+++|..|+. .|...+|-
T Consensus 58 vle~~~~~V~~dA~~~a~hakR-----------ktIt~~DV~~Alr~~g~~lYGf 101 (103)
T 1tzy_D 58 VLKVFLENVIRDAVTYTEHAKR-----------KTVTAMDVVYALKRQGRTLYGF 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHHHHTTCEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-----------CcCCHHHHHHHHHHcCCCCcCC
Confidence 3445566666666677788787 5788999999887 57666764
No 73
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.24 E-value=64 Score=21.99 Aligned_cols=28 Identities=4% Similarity=0.037 Sum_probs=23.9
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++.+|...|
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 107 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAALKFKVSDY 107 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHSCCSEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 3578899999999999999999998753
No 74
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.19 E-value=48 Score=24.36 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=28.8
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCcccccc--cHHHHHHHH
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFGEN--YVQEIVEKA 98 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~FGEN--rvQEl~~K~ 98 (185)
.+.+|.+|=+-..+.+..++++|..+|=.- ...++....
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i 119 (184)
T 3rqi_A 79 DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAAL 119 (184)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHH
Confidence 578999999999999999999998764221 244555444
No 75
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.89 E-value=48 Score=22.20 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-..+.+.+..++++|...|
T Consensus 84 ~~~pii~ls~~~~~~~~~~~~~~g~~~~ 111 (140)
T 1k68_A 84 KRIPVVVLSTSINEDDIFHSYDLHVNCY 111 (140)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred ccccEEEEecCCcHHHHHHHHHhchhhe
Confidence 3577888998888999999999998764
No 76
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=24.66 E-value=1.4e+02 Score=21.33 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHH-cCCccccc
Q 029918 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYE-AGHRCFGE 88 (185)
Q Consensus 36 i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~-~G~r~FGE 88 (185)
+...++.|.+.-...|..++| ||..+++|..|+. .|...+|-
T Consensus 59 le~~~~~V~~dA~~~a~hakR-----------ktvt~~DV~~Alr~~g~~lYGf 101 (103)
T 2yfw_B 59 LKTFLESVIRDAVTYTEHAKR-----------KTVTSLDVVYALKRQGRTLYGF 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHcCC-----------CcCcHHHHHHHHHHcCCCCcCC
Confidence 445556666666677778787 5778999999886 57666663
No 77
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.39 E-value=91 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=23.3
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-....+.+..++++|...|
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~ga~~~ 105 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAAQAGASGY 105 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEecCccHHHHHHHHHhCcCce
Confidence 577899999999999999999998765
No 78
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=24.32 E-value=71 Score=21.82 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.3
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-+-+.+.+..++++|...|
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~ 107 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGF 107 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEE
Confidence 467899999999999999999998764
No 79
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=23.93 E-value=99 Score=21.31 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeecCCCHHHHHHHHH-cCCccccc
Q 029918 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYE-AGHRCFGE 88 (185)
Q Consensus 36 i~~nl~~V~~rI~~a~~~~gR~p~~V~LvAVSKt~p~e~I~~a~~-~G~r~FGE 88 (185)
+...++.|...-...|..+|| ||..+++|..|+. .|...||-
T Consensus 40 l~~~~~~I~~dA~~~a~ha~R-----------KTvt~~DV~~Alk~~g~~lYgf 82 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKR-----------KTVTAMDVVYALKRQGRTLYGF 82 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHTTTTCEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHcCC-----------CcCcHHHHHHHHHHcCCCCCCC
Confidence 445566666666677788888 5788999999887 57666663
No 80
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.16 E-value=40 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.3
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 74 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 100 (134)
T 3f6c_A 74 SGIIIIVSAKNDHFYGKHCADAGANGF 100 (134)
T ss_dssp CSEEEEEECC---CTHHHHHHTTCSEE
T ss_pred CCeEEEEeCCCChHHHHHHHHhCCCEE
Confidence 577899999888888999999997753
No 81
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=23.10 E-value=54 Score=22.32 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=28.8
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCcccccc--cHHHHHHHHh
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFGEN--YVQEIVEKAA 99 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~FGEN--rvQEl~~K~~ 99 (185)
.+.+|.+|-..+.+.+..++++|..+|=.- ..+++.....
T Consensus 87 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 128 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVT 128 (135)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHH
Confidence 678899999999999999999998764221 2445554443
No 82
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=22.57 E-value=90 Score=22.83 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+-+|.+|=+-..+.+..++++|..+|
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~y 113 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGY 113 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEE
Confidence 3567899999999999999999998765
No 83
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=22.35 E-value=2.4e+02 Score=26.73 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCcccccccHHHHHHHHhcCCCCceEEEE-ecccc-cchHHHhhcCCCcc-EEEecCcHHHHHHHHHHHHhcC
Q 029918 82 GHRCFGENYVQEIVEKAAQLPDDLEWHFI-GNLQS-NKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMG 151 (185)
Q Consensus 82 G~r~FGENrvQEl~~K~~~L~~~i~WHfI-G~LQs-NKvk~~~~~~~~~~-~IhSVDs~kLA~~L~k~a~~~~ 151 (185)
+..++|.+++.-+.+++..+.+++.+..+ +.+.. |....++ ..++ +|-.+|+...-..|++.|...+
T Consensus 64 ~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~i~~~~~~~~~~---~~~DlVvda~Dn~~aR~~ln~~c~~~~ 133 (640)
T 1y8q_B 64 QKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFF---RQFILVMNALDNRAARNHVNRMCLAAD 133 (640)
T ss_dssp CGGGTTSBHHHHHHHHHHTTCTTCEEEEEESCTTSTTSCHHHH---TTCSEEEECCSCHHHHHHHHHHHHHHT
T ss_pred ChhHcChHHHHHHHHHHHHHCCCCeEEEEecccchhhhhHhhh---cCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 44578999999999999999776766644 55542 3344566 4566 5778999999899999997754
No 84
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=22.17 E-value=44 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.4
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-....+.+..++.+|...|
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~ 121 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDV 121 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCcee
Confidence 578899999999999999999997754
No 85
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=22.12 E-value=95 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-....+.+..++++|...|
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~~~ga~~~ 101 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNALNSGGDDY 101 (136)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCcEE
Confidence 567888898888889999999998765
No 86
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.97 E-value=54 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=23.7
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~ 137 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTF 137 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEE
Confidence 567899999999999999999998764
No 87
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=21.97 E-value=94 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.6
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~ 103 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKAVELGASYF 103 (130)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTTCEEE
T ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEE
Confidence 467888888888999999999998764
No 88
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=21.67 E-value=72 Score=20.82 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.9
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-....+.+..++++|...|
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 98 (121)
T 1zh2_A 72 AVPVIVLSARSEESDKIAALDAGADDY 98 (121)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHhcCCCeE
Confidence 467888998888898999999998765
No 89
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=21.48 E-value=1.1e+02 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.4
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|=+...+.+..++++|...|
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~g~~~~ 107 (129)
T 3h1g_A 81 EIPIIMITAEGGKAEVITALKAGVNNY 107 (129)
T ss_dssp TCCEEEEESCCSHHHHHHHHHHTCCEE
T ss_pred CCeEEEEeCCCChHHHHHHHHcCccEE
Confidence 577899999999999999999998754
No 90
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=21.37 E-value=84 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.4
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-+.+.+.+..++++|...|
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~Ga~~~ 105 (215)
T 1a04_A 79 SGRIVVFSVSNHEEDVVTALKRGADGY 105 (215)
T ss_dssp CSEEEEEECCCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEECCCCHHHHHHHHHcCCcEE
Confidence 578899999999999999999998764
No 91
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.18 E-value=78 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-..+.+.+..++++|...|
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~ 107 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDF 107 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEE
Confidence 3577899999999999999999998754
No 92
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=20.82 E-value=79 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=22.9
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 91 ~~piiils~~~~~~~~~~~~~~ga~~~ 117 (149)
T 1i3c_A 91 RIPVVVLTTSHNEDDVIASYELHVNCY 117 (149)
T ss_dssp TSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCeEEEEECCCChHHHHHHHHcCCcEE
Confidence 577888888888899999999998765
No 93
>3sdo_A Nitrilotriacetate monooxygenase; seattle structural genomics center for infectious disease, S oxidoreductase; 2.00A {Burkholderia pseudomallei} SCOP: c.1.16.0
Probab=20.81 E-value=75 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 029918 39 ALRSVIQRVHQAAERSSRPPDRIRIVAV 66 (185)
Q Consensus 39 nl~~V~~rI~~a~~~~gR~p~~V~LvAV 66 (185)
.+....+.+.+.|.++||+|+++++++-
T Consensus 245 ~~~~~~~~~r~~a~~~GR~p~~i~v~~~ 272 (453)
T 3sdo_A 245 EARVFYRRVKAAAAAAGRNPDHVKVFPG 272 (453)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 3456677788888999999999887653
No 94
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=20.65 E-value=1.5e+02 Score=19.50 Aligned_cols=28 Identities=4% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++++|...|
T Consensus 80 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 107 (129)
T 1p6q_A 80 KKAAFIILTAQGDRALVQKAAALGANNV 107 (129)
T ss_dssp TTCEEEECCSCCCHHHHHHHHHHTCSCE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 3678999999989999999999998764
No 95
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=20.53 E-value=88 Score=21.66 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=23.8
Q ss_pred CCeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 59 DRIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 59 ~~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
..+.+|.+|-....+.+..++++|...|
T Consensus 88 ~~~pii~~t~~~~~~~~~~~~~~g~~~~ 115 (152)
T 3heb_A 88 RRSPVVILTTTDDQREIQRCYDLGANVY 115 (152)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred cCCCEEEEecCCCHHHHHHHHHCCCcEE
Confidence 3577899999999999999999998754
No 96
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.27 E-value=1.1e+02 Score=20.05 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=22.8
Q ss_pred CeEEEEeecCCCHHHHHHHHHcCCccc
Q 029918 60 RIRIVAVSKTKPVSVIRQVYEAGHRCF 86 (185)
Q Consensus 60 ~V~LvAVSKt~p~e~I~~a~~~G~r~F 86 (185)
.+.+|.+|-..+.+.+..++++|...|
T Consensus 74 ~~~ii~~s~~~~~~~~~~~~~~g~~~~ 100 (123)
T 1xhf_A 74 NVALMFLTGRDNEVDKILGLEIGADDY 100 (123)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCCChHHHHHHHhcCcceE
Confidence 467888998888888999999998765
Done!