BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029919
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 80 VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139
VRG+A E +TP I +FG + R R +P+ V +G+D RVSG
Sbjct: 10 VRGIANE-------KITPEFAMKIGMAFGTLLKRE---GRKKPL----VVVGRDTRVSGE 55
Query: 140 SLSVAVFAGLARAGCLVFDMGLATTPACFMST 171
L A+ +GL GC V D+G+A TPA +T
Sbjct: 56 MLKEALISGLLSVGCDVIDVGIAPTPAVQWAT 87
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 14 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 69
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 70 GLVDCGCQVSDVGMVPTPVLYYA 92
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 14 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 69
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 70 GLVDCGCQVSDVGMVPTPVLYYA 92
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G+ TP + +
Sbjct: 71 GLVDCGCQVSDVGMVPTPVLYYA 93
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 91 RTVDLTPSAVEAIAESFGEWVIRSLENE---RGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147
R D+ + + W+ R++ +E RG P V++G+D R+SGP L +
Sbjct: 15 RAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC----VAVGRDGRLSGPELVKQLIQ 70
Query: 148 GLARAGCLVFDMGLATTPACFMS 170
GL GC V D+G TP + +
Sbjct: 71 GLVDCGCQVSDVGXVPTPVLYYA 93
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 16/92 (17%)
Query: 77 GSD-VRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135
G+D VRGVA +LTP I FG +V L + RP KV +G+D R
Sbjct: 27 GTDGVRGVA-------NKELTPELAFKIGR-FGGYV---LTKDTDRP----KVIIGRDTR 71
Query: 136 VSGPSLSVAVFAGLARAGCLVFDMGLATTPAC 167
+SG L A+ AGL G V +G+ +TP
Sbjct: 72 ISGHMLEGALVAGLLSTGAEVMRLGVISTPGV 103
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 112 IRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171
+ SL N++ P V +G+D R SG L A+ +GL AG V D+G+ TP T
Sbjct: 31 VGSLINQKNYPK---FVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFXT 87
Query: 172 L 172
+
Sbjct: 88 V 88
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIM 183
K+ +G+D R G L V GL G V+D G+A TPA + + YD ++
Sbjct: 39 KILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPA--LQYAVKTLGYDGGVV 93
>pdb|2O1M|A Chain A, Crystal Structure Of The Probable Amino-Acid Abc
Transporter Extracellular-Binding Protein Ytmk From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr572
pdb|2O1M|B Chain B, Crystal Structure Of The Probable Amino-Acid Abc
Transporter Extracellular-Binding Protein Ytmk From
Bacillus Subtilis. Northeast Structural Genomics
Consortium Target Sr572
Length = 258
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 59 YNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENE 118
+N+V + +I LQN +RG+ DL V A S G V++ +
Sbjct: 96 FNKVAYNHFPLKITVLQNNDTIRGIE---------DLKGKRVITSATSNGALVLKKWNED 146
Query: 119 RGRPVE 124
GRP E
Sbjct: 147 NGRPFE 152
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 65 DEEMDRIRR-LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWV 111
DEEM+ RR NG + R L + +D P+ V A+ + W+
Sbjct: 185 DEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWL 232
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 65 DEEMDRIRR-LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWV 111
DEEM+ RR NG + R L + +D P+ V A+ + W+
Sbjct: 183 DEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWL 230
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 13 SNSSRTSFLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVVVDEEMDRIR 72
++S + F+ C K ++GL P + H+ H+ + + +V VD E +I
Sbjct: 55 TDSRKNPFVYKVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQIT 114
Query: 73 -RLQNGSDVRGVALEGEK-------GRTVDLTPSAVEAIAE----SFGEWVIRSL 115
+ G V GV G++ G TV+LT S E E + E+ R L
Sbjct: 115 IGIHTGEVVTGVI--GQRMPRYSLFGNTVNLT-SRTETTGEKGKINVSEYTYRCL 166
>pdb|2I71|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
pdb|2I71|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
Length = 400
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 50 HVKSSVTDKYNEVVVDEEMDRIRRLQNGSD 79
H + DK +++ E+D+I + Q GS+
Sbjct: 314 HYAETYADKVTRAIIENEVDKIEKYQXGSE 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,194,288
Number of Sequences: 62578
Number of extensions: 192886
Number of successful extensions: 560
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 24
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)