Query 029919
Match_columns 185
No_of_seqs 201 out of 1321
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02371 phosphoglucosamine mu 99.9 3E-25 6.5E-30 209.3 16.8 129 52-184 46-174 (583)
2 PF02878 PGM_PMM_I: Phosphoglu 99.9 1.9E-24 4E-29 168.6 9.4 97 72-184 1-97 (137)
3 PRK14323 glmM phosphoglucosami 99.9 8.9E-23 1.9E-27 185.6 11.4 97 72-184 3-99 (440)
4 cd05802 GlmM GlmM is a bacteri 99.9 2.2E-22 4.7E-27 182.6 11.1 94 74-184 1-94 (434)
5 PRK14316 glmM phosphoglucosami 99.9 2.9E-22 6.2E-27 182.5 11.4 96 73-184 2-97 (448)
6 PRK14324 glmM phosphoglucosami 99.9 3.1E-22 6.8E-27 182.9 11.6 95 73-184 2-96 (446)
7 PRK14315 glmM phosphoglucosami 99.9 3.2E-22 7E-27 182.5 11.2 96 72-184 3-99 (448)
8 PRK14320 glmM phosphoglucosami 99.9 3.8E-22 8.2E-27 181.8 11.5 96 73-184 3-98 (443)
9 cd03089 PMM_PGM The phosphoman 99.9 4.6E-22 1E-26 180.9 11.6 93 74-184 1-93 (443)
10 PRK14317 glmM phosphoglucosami 99.9 4.7E-22 1E-26 182.3 11.8 97 72-184 16-112 (465)
11 PRK14318 glmM phosphoglucosami 99.9 4.7E-22 1E-26 181.5 11.1 99 73-184 3-101 (448)
12 PRK14314 glmM phosphoglucosami 99.9 6.3E-22 1.4E-26 180.7 11.4 98 71-184 2-99 (450)
13 PRK10887 glmM phosphoglucosami 99.9 6.5E-22 1.4E-26 180.3 11.1 96 72-184 1-96 (443)
14 cd05805 MPG1_transferase GTP-m 99.9 3.4E-22 7.3E-27 181.7 9.1 91 74-184 1-91 (441)
15 PRK15414 phosphomannomutase Cp 99.9 6.2E-22 1.3E-26 181.3 10.9 91 73-184 5-95 (456)
16 cd05803 PGM_like4 This PGM-lik 99.9 1.1E-21 2.3E-26 178.8 11.4 94 74-184 1-94 (445)
17 TIGR01455 glmM phosphoglucosam 99.9 1.7E-21 3.7E-26 177.4 11.7 95 75-184 1-95 (443)
18 PRK14321 glmM phosphoglucosami 99.9 1.6E-21 3.5E-26 178.2 10.1 91 73-184 3-93 (449)
19 COG1109 {ManB} Phosphomannomut 99.9 2.7E-21 5.8E-26 177.6 11.1 94 73-184 8-101 (464)
20 PRK14322 glmM phosphoglucosami 99.9 1.5E-21 3.2E-26 177.3 8.7 90 73-184 4-93 (429)
21 cd05800 PGM_like2 This PGM-lik 99.8 3.6E-21 7.8E-26 175.7 10.6 95 74-184 2-97 (461)
22 cd03087 PGM_like1 This archaea 99.8 4.9E-21 1.1E-25 173.8 10.3 89 74-184 1-89 (439)
23 PRK09542 manB phosphomannomuta 99.8 7.7E-21 1.7E-25 173.5 11.1 91 75-184 1-91 (445)
24 PRK14319 glmM phosphoglucosami 99.8 1.2E-20 2.5E-25 171.5 9.9 89 73-184 2-90 (430)
25 PTZ00150 phosphoglucomutase-2- 99.8 4.4E-20 9.6E-25 174.2 10.2 101 74-184 46-147 (584)
26 cd03085 PGM1 Phosphoglucomutas 99.8 6.8E-20 1.5E-24 172.1 11.2 96 73-184 11-109 (548)
27 cd05799 PGM2 This CD includes 99.8 5.8E-20 1.3E-24 169.0 10.5 100 74-184 3-103 (487)
28 cd03088 ManB ManB is a bacteri 99.8 7.1E-20 1.5E-24 167.8 10.8 92 74-184 1-92 (459)
29 PRK07564 phosphoglucomutase; V 99.8 8.4E-20 1.8E-24 170.9 10.5 96 73-184 38-141 (543)
30 PLN02307 phosphoglucomutase 99.8 9.9E-20 2.1E-24 172.2 10.7 97 72-184 22-124 (579)
31 TIGR01132 pgm phosphoglucomuta 99.8 1E-19 2.2E-24 170.3 10.3 97 72-184 38-142 (543)
32 cd05801 PGM_like3 This bacteri 99.8 9.7E-19 2.1E-23 163.0 9.5 96 73-184 21-125 (522)
33 KOG1220 Phosphoglucomutase/pho 99.6 5.1E-16 1.1E-20 145.8 9.3 100 73-184 59-160 (607)
34 PLN02895 phosphoacetylglucosam 98.9 1.3E-09 2.8E-14 103.5 6.4 48 125-172 127-174 (562)
35 cd03086 PGM3 PGM3 (phosphogluc 98.9 1.9E-09 4.1E-14 101.3 6.4 54 125-180 102-155 (513)
36 PTZ00302 N-acetylglucosamine-p 98.9 2.2E-09 4.8E-14 102.4 6.2 48 125-172 152-200 (585)
37 COG0033 Pgm Phosphoglucomutase 98.9 7.1E-09 1.5E-13 96.0 9.2 98 73-184 16-119 (524)
38 KOG2537 Phosphoglucomutase/pho 97.8 2.5E-05 5.4E-10 73.5 4.1 49 125-173 124-172 (539)
39 KOG0625 Phosphoglucomutase [Ca 97.2 0.0012 2.5E-08 61.7 7.0 93 75-184 18-115 (558)
40 cd03084 phosphohexomutase The 96.3 0.0023 4.9E-08 56.9 2.4 30 74-110 1-30 (355)
41 PF02502 LacAB_rpiB: Ribose/Ga 89.0 1.3 2.8E-05 35.4 5.9 56 127-184 1-63 (140)
42 TIGR01120 rpiB ribose 5-phosph 88.6 2.2 4.8E-05 34.3 7.0 56 127-184 1-63 (143)
43 PRK12613 galactose-6-phosphate 88.6 2.2 4.9E-05 34.2 7.0 57 127-185 2-62 (141)
44 TIGR01118 lacA galactose-6-pho 88.5 2.3 4.9E-05 34.2 7.0 56 127-184 2-62 (141)
45 COG0426 FpaA Uncharacterized f 88.4 1.4 3.1E-05 40.8 6.5 75 99-185 229-304 (388)
46 PRK08621 galactose-6-phosphate 88.2 2.4 5.2E-05 34.1 7.0 56 127-184 2-62 (142)
47 TIGR01119 lacB galactose-6-pho 87.3 2.5 5.4E-05 35.1 6.8 56 127-184 2-64 (171)
48 PTZ00215 ribose 5-phosphate is 87.1 2.7 5.9E-05 34.1 6.8 57 126-184 3-68 (151)
49 PRK05571 ribose-5-phosphate is 86.4 3.6 7.7E-05 33.3 7.1 56 127-184 2-65 (148)
50 PRK08622 galactose-6-phosphate 85.8 3.8 8.2E-05 34.0 7.0 56 127-184 2-64 (171)
51 PRK12615 galactose-6-phosphate 85.5 3.9 8.4E-05 33.9 7.0 56 127-184 2-64 (171)
52 TIGR02133 RPI_actino ribose 5- 84.6 4.7 0.0001 32.5 7.0 56 127-184 2-65 (148)
53 TIGR00689 rpiB_lacA_lacB sugar 83.6 4.3 9.3E-05 32.6 6.3 55 128-184 1-62 (144)
54 COG0698 RpiB Ribose 5-phosphat 82.0 4.8 0.0001 32.8 6.1 34 127-162 2-35 (151)
55 PRK05452 anaerobic nitric oxid 66.1 32 0.0007 32.4 8.1 57 99-164 234-293 (479)
56 cd02072 Glm_B12_BD B12 binding 64.0 10 0.00022 29.9 3.7 46 130-179 7-52 (128)
57 TIGR01501 MthylAspMutase methy 61.4 13 0.00027 29.5 3.8 46 130-179 9-54 (134)
58 PRK14719 bifunctional RNAse/5- 59.1 10 0.00022 34.7 3.3 74 61-156 25-98 (360)
59 COG2185 Sbm Methylmalonyl-CoA 58.5 11 0.00024 30.4 3.1 44 125-171 12-58 (143)
60 cd03364 TOPRIM_DnaG_primases T 54.0 36 0.00078 23.5 4.8 34 126-159 44-77 (79)
61 PRK11921 metallo-beta-lactamas 53.1 47 0.001 30.0 6.6 54 99-161 230-286 (394)
62 PRK02261 methylaspartate mutas 49.7 61 0.0013 25.3 6.0 49 126-179 4-56 (137)
63 cd02069 methionine_synthase_B1 45.7 75 0.0016 26.7 6.3 50 125-179 88-141 (213)
64 cd00951 KDGDH 5-dehydro-4-deox 44.5 1.3E+02 0.0029 26.0 7.9 85 61-159 16-100 (289)
65 PRK13883 conjugal transfer pro 43.9 1.3E+02 0.0027 24.6 7.0 59 94-161 27-85 (151)
66 PF00861 Ribosomal_L18p: Ribos 43.7 88 0.0019 24.0 5.9 52 95-156 68-119 (119)
67 PF02789 Peptidase_M17_N: Cyto 41.5 1.2E+02 0.0025 22.2 6.2 53 93-154 64-117 (126)
68 TIGR00640 acid_CoA_mut_C methy 41.3 53 0.0011 25.6 4.4 44 132-179 12-55 (132)
69 PRK05569 flavodoxin; Provision 39.5 81 0.0017 23.7 5.1 33 127-159 3-36 (141)
70 PTZ00090 40S ribosomal protein 38.9 61 0.0013 28.2 4.7 60 94-166 159-219 (233)
71 PRK05568 flavodoxin; Provision 38.7 86 0.0019 23.6 5.2 35 127-161 3-38 (142)
72 COG1922 WecG Teichoic acid bio 37.6 1.9E+02 0.004 25.5 7.6 57 126-185 135-192 (253)
73 TIGR00674 dapA dihydrodipicoli 36.7 2.7E+02 0.0059 23.9 8.7 86 61-159 14-99 (285)
74 PF00582 Usp: Universal stress 36.5 43 0.00094 23.4 3.0 43 126-168 3-45 (140)
75 cd06335 PBP1_ABC_ligand_bindin 36.5 1.3E+02 0.0028 25.9 6.6 50 103-160 124-173 (347)
76 PF13458 Peripla_BP_6: Peripla 36.1 1.4E+02 0.003 25.1 6.5 55 95-158 114-168 (343)
77 PF13662 Toprim_4: Toprim doma 35.7 32 0.00069 23.9 2.2 33 126-158 47-79 (81)
78 PRK13835 conjugal transfer pro 34.9 2.1E+02 0.0046 23.2 7.0 56 93-158 32-87 (145)
79 PF00701 DHDPS: Dihydrodipicol 34.9 2.1E+02 0.0046 24.5 7.6 87 60-159 16-102 (289)
80 TIGR03249 KdgD 5-dehydro-4-deo 33.9 3E+02 0.0065 23.9 8.4 85 61-159 21-105 (296)
81 PRK06756 flavodoxin; Provision 33.6 95 0.0021 23.7 4.7 31 127-157 3-34 (148)
82 PRK09271 flavodoxin; Provision 33.3 1E+02 0.0023 24.1 5.0 30 127-156 2-32 (160)
83 PRK03620 5-dehydro-4-deoxygluc 33.2 2.9E+02 0.0062 24.1 8.2 86 60-159 22-107 (303)
84 cd06342 PBP1_ABC_LIVBP_like Ty 32.9 2.6E+02 0.0055 23.4 7.6 53 102-162 120-172 (334)
85 cd01989 STK_N The N-terminal d 32.9 66 0.0014 23.9 3.7 38 127-164 1-38 (146)
86 PF03602 Cons_hypoth95: Conser 32.5 38 0.00083 27.7 2.4 51 131-184 18-71 (183)
87 PRK04147 N-acetylneuraminate l 32.1 3.1E+02 0.0067 23.7 8.2 86 61-159 19-105 (293)
88 PLN02739 serine acetyltransfer 30.6 46 0.00099 30.7 2.8 31 94-135 323-353 (355)
89 PF04069 OpuAC: Substrate bind 30.4 83 0.0018 26.3 4.2 44 127-170 2-45 (257)
90 TIGR01391 dnaG DNA primase, ca 29.6 3E+02 0.0064 25.4 8.0 72 63-159 262-334 (415)
91 PF13362 Toprim_3: Toprim doma 29.4 1.8E+02 0.0039 20.5 5.3 36 126-161 42-79 (96)
92 TIGR01754 flav_RNR ribonucleot 29.3 98 0.0021 23.6 4.1 29 128-156 3-32 (140)
93 PRK03767 NAD(P)H:quinone oxido 27.3 1.5E+02 0.0033 24.0 5.2 33 127-159 3-37 (200)
94 cd00408 DHDPS-like Dihydrodipi 27.3 3.8E+02 0.0083 22.6 8.5 85 62-159 14-98 (281)
95 PF00975 Thioesterase: Thioest 27.0 2.1E+02 0.0045 22.7 5.8 50 99-158 47-96 (229)
96 PRK15404 leucine ABC transport 27.0 2.3E+02 0.005 25.0 6.6 48 104-159 148-195 (369)
97 TIGR02370 pyl_corrinoid methyl 26.8 2.1E+02 0.0045 23.5 5.9 50 125-179 84-137 (197)
98 cd02768 MopB_NADH-Q-OR-NuoG2 M 26.6 93 0.002 27.4 4.0 41 126-166 151-191 (386)
99 cd06339 PBP1_YraM_LppC_lipopro 26.5 2.5E+02 0.0054 24.2 6.6 49 103-160 111-159 (336)
100 COG0256 RplR Ribosomal protein 26.4 2.8E+02 0.006 21.9 6.2 51 96-156 75-125 (125)
101 cd02070 corrinoid_protein_B12- 25.9 2.1E+02 0.0045 23.4 5.7 44 125-171 82-129 (201)
102 PTZ00129 40S ribosomal protein 25.9 2.3E+02 0.005 23.1 5.8 64 94-165 68-136 (149)
103 PRK04017 hypothetical protein; 25.6 1.4E+02 0.003 23.8 4.4 32 126-157 66-97 (132)
104 PRK09273 hypothetical protein; 25.4 2.1E+02 0.0045 24.6 5.7 24 138-161 15-38 (211)
105 PRK06703 flavodoxin; Provision 25.3 1.6E+02 0.0034 22.5 4.7 30 128-157 4-34 (151)
106 cd06334 PBP1_ABC_ligand_bindin 24.9 3.6E+02 0.0078 23.6 7.4 59 101-163 120-178 (351)
107 TIGR01753 flav_short flavodoxi 24.6 1.4E+02 0.003 22.0 4.1 21 136-156 10-30 (140)
108 cd06346 PBP1_ABC_ligand_bindin 24.6 3.5E+02 0.0076 22.8 7.1 48 103-159 124-171 (312)
109 PF03808 Glyco_tran_WecB: Glyc 24.3 3.7E+02 0.008 21.4 6.9 42 127-168 75-117 (172)
110 cd00954 NAL N-Acetylneuraminic 24.1 4.6E+02 0.01 22.5 8.5 85 62-159 17-102 (288)
111 cd06356 PBP1_Amide_Urea_BP_lik 24.0 3.1E+02 0.0068 23.4 6.8 52 103-163 119-170 (334)
112 PF07283 TrbH: Conjugal transf 24.0 2.8E+02 0.006 21.7 5.8 53 100-161 5-57 (121)
113 TIGR00696 wecB_tagA_cpsF bacte 24.0 3.5E+02 0.0076 22.0 6.7 40 128-168 76-116 (177)
114 TIGR02313 HpaI-NOT-DapA 2,4-di 24.0 4.4E+02 0.0096 22.9 7.8 86 61-159 16-101 (294)
115 PF08659 KR: KR domain; Inter 23.9 2E+02 0.0043 22.7 5.2 56 102-169 11-70 (181)
116 TIGR01755 flav_wrbA NAD(P)H:qu 23.0 1.8E+02 0.0039 23.7 4.9 33 127-159 2-36 (197)
117 cd06352 PBP1_NPR_GC_like Ligan 22.7 3.8E+02 0.0083 23.2 7.1 50 101-159 122-172 (389)
118 cd02067 B12-binding B12 bindin 22.6 1.2E+02 0.0026 22.2 3.4 18 145-162 19-36 (119)
119 cd06349 PBP1_ABC_ligand_bindin 22.5 3.5E+02 0.0075 22.9 6.7 49 103-159 121-169 (340)
120 COG0836 {ManC} Mannose-1-phosp 21.8 3.8E+02 0.0083 24.6 7.0 131 20-170 15-155 (333)
121 COG0683 LivK ABC-type branched 21.8 2.9E+02 0.0063 24.3 6.3 48 102-157 133-180 (366)
122 PF00258 Flavodoxin_1: Flavodo 21.7 1.1E+02 0.0023 22.9 3.1 24 136-159 8-31 (143)
123 cd06327 PBP1_SBP_like_1 Peripl 21.5 2.9E+02 0.0062 23.4 6.0 50 101-159 120-169 (334)
124 PLN02417 dihydrodipicolinate s 21.4 5.3E+02 0.011 22.2 7.7 86 61-159 17-102 (280)
125 TIGR03863 PQQ_ABC_bind ABC tra 21.4 3.9E+02 0.0085 23.7 7.0 50 101-159 113-162 (347)
126 COG1004 Ugd Predicted UDP-gluc 21.3 1.2E+02 0.0025 28.7 3.7 65 93-171 145-209 (414)
127 TIGR02884 spore_pdaA delta-lac 21.1 2.3E+02 0.0049 23.6 5.2 34 126-159 187-220 (224)
128 cd06269 PBP1_glutamate_recepto 21.0 4.3E+02 0.0093 21.0 7.0 53 102-163 126-178 (298)
129 CHL00041 rps11 ribosomal prote 20.9 3.9E+02 0.0084 20.4 8.3 60 94-165 52-112 (116)
130 cd06350 PBP1_GPCR_family_C_lik 20.8 3.8E+02 0.0083 22.6 6.6 49 102-159 146-194 (348)
131 cd05565 PTS_IIB_lactose PTS_II 20.8 2.6E+02 0.0056 20.9 4.9 45 127-171 2-61 (99)
132 cd00950 DHDPS Dihydrodipicolin 20.6 5.3E+02 0.011 21.9 8.1 86 61-159 16-101 (284)
133 cd06326 PBP1_STKc_like Type I 20.5 4.7E+02 0.01 21.9 7.0 49 101-158 121-169 (336)
No 1
>PLN02371 phosphoglucosamine mutase family protein
Probab=99.93 E-value=3e-25 Score=209.27 Aligned_cols=129 Identities=54% Similarity=0.829 Sum_probs=105.0
Q ss_pred eeccccccccccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEE
Q 029919 52 KSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLG 131 (185)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVG 131 (185)
.+....+..+|...+ ...++.||+++||||++++|+.|++++|||+++.++|+|||+|+.++.... + ....+|+||
T Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~-~--~~~~~VvVG 121 (583)
T PLN02371 46 TAAAASSSTESPVVD-KDDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKAD-G--SGELRVSVG 121 (583)
T ss_pred eecccCCCCcCcCcc-HHHHHHhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc-c--CCCCeEEEE
Confidence 344445555655544 568999999999999999887776679999999999999999997541000 0 012479999
Q ss_pred ecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 132 KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 132 rD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
||+|.+|++|++++++||+++|++|+++|++|||+++|++...++++++||||
T Consensus 122 ~D~R~sS~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av~~~~~~~~gGImI 174 (583)
T PLN02371 122 RDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTLTEREDYDAPIMI 174 (583)
T ss_pred eCCCCChHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHHhccCCCceEEEE
Confidence 99999999999999999999999999999999999999994324489999998
No 2
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.91 E-value=1.9e-24 Score=168.60 Aligned_cols=97 Identities=33% Similarity=0.470 Sum_probs=86.4
Q ss_pred hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
+.+|+++||||+++. ++|||+++.+++.+|++|+.++. ...+|+||||+|.+|++|+++++++|.+
T Consensus 1 ~~~F~~~girG~~~~------~~lt~~~~~~~~~a~~~~~~~~~--------~~~~VvVg~D~R~~s~~~~~~~~~~l~~ 66 (137)
T PF02878_consen 1 RVLFGTSGIRGIINV------GELTPEFAARLAQAFASYLKEKG--------NGSRVVVGRDTRPSSPMLAKALAAGLRA 66 (137)
T ss_dssp -CCBBTTSEEEECTH------TTBSHHHHHHHHHHHHHHHHHTT--------TSSEEEEEE-SSTTHHHHHHHHHHHHHH
T ss_pred CCccCCCCeeEEeCC------CCCCHHHHHHHHHHHHHhhcccC--------CCCeEEEEEcccCCHHHHHHHHHHHHhh
Confidence 468999999999984 26999999999999999998752 2468999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
+|++|+++|++|||+++|++ +++++++||||
T Consensus 67 ~G~~V~~~g~~~tP~~~~~~--~~~~~~ggi~i 97 (137)
T PF02878_consen 67 NGVDVIDIGLVPTPALSFAI--RQLNADGGIMI 97 (137)
T ss_dssp TTEEEEEEEEB-HHHHHHHH--HHHTESEEEEE
T ss_pred cccccccccccCcHHhhhhc--cccccceeeEE
Confidence 99999999999999999999 56889999998
No 3
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.88 E-value=8.9e-23 Score=185.63 Aligned_cols=97 Identities=36% Similarity=0.392 Sum_probs=88.0
Q ss_pred hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
+.+|+++||||++++ ++|||+++.++|+|||+++++.. ...+|+||||+|.+|++|++++++||++
T Consensus 3 ~~~Fgt~giRG~~~~------~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s 68 (440)
T PRK14323 3 RRYFGTDGVRGVAGE------PPLTPEFVLKLGQAAGEVFKRHG--------PRPVVLLGKDTRQSGDMLEAALAAGLTS 68 (440)
T ss_pred ccEeCCCCeeeecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCccHHHHHHHHHHHHHH
Confidence 468999999999983 36999999999999999997531 1246999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
.|++|+++|++|||+++|++ +++++++||||
T Consensus 69 ~G~~V~~~g~~pTP~~~~av--~~~~~~gGI~I 99 (440)
T PRK14323 69 RGVRVEHLGVLPTPGVSYLT--RHLGATAGVVI 99 (440)
T ss_pred CCCEEEEecccChHHHHHHH--HHhCCCEEEEE
Confidence 99999999999999999999 57899999998
No 4
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.88 E-value=2.2e-22 Score=182.65 Aligned_cols=94 Identities=34% Similarity=0.398 Sum_probs=86.6
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
+|+++||||+++ ++|||+++.++|+|||+++.++. ...+|+||||+|.+|++|++++++||+++|
T Consensus 1 ~Fg~~giRG~~~-------~~lt~e~~~~lg~a~~~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G 65 (434)
T cd05802 1 LFGTDGIRGVAN-------EPLTPELALKLGRAAGKVLGKGG--------GRPKVLIGKDTRISGYMLESALAAGLTSAG 65 (434)
T ss_pred CCCCCccceECC-------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 699999999998 48999999999999999997531 125799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++|++|||+++|++ ++++++|||||
T Consensus 66 ~~V~~~g~~pTP~~~~av--~~~~~~gGI~I 94 (434)
T cd05802 66 VDVLLLGVIPTPAVAYLT--RKLRADAGVVI 94 (434)
T ss_pred CcEEEEcccchHHHHHHH--HHhCCCeEEEE
Confidence 999999999999999999 57899999998
No 5
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=2.9e-22 Score=182.49 Aligned_cols=96 Identities=32% Similarity=0.427 Sum_probs=87.2
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.+||+|||+++.++. . ...+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fg~~giRG~~~-------~~ltpe~~~~ig~a~~~~l~~~~----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 67 (448)
T PRK14316 2 KYFGTDGVRGVAN-------KELTPELAFKLGRAGGYVLTKHE----T---ERPKVLVGRDTRISGDMLESALIAGLLSV 67 (448)
T ss_pred ceeccCCcceEcC-------CCCCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 4899999999998 58999999999999999987521 0 12469999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ ++++++|||||
T Consensus 68 G~~V~~~g~~pTP~~~~av--~~~~~~gGi~I 97 (448)
T PRK14316 68 GAEVMRLGVIPTPGVAYLT--RALGADAGVMI 97 (448)
T ss_pred CCEEEEecccchHHHHHHH--HHhcCcEEEEE
Confidence 9999999999999999999 67899999998
No 6
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=3.1e-22 Score=182.85 Aligned_cols=95 Identities=32% Similarity=0.347 Sum_probs=87.1
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.++|+|||+++.++. ...+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fgt~GiRG~~~-------~~lt~~~~~~lg~a~g~~l~~~~--------~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 66 (446)
T PRK14324 2 KLFGTDGVRGKAG-------EKLTAFLAMRLAMAAGIYFKKHS--------ITNKILVGKDTRRSGYMIENALVSGLTSV 66 (446)
T ss_pred cccCCCCcceecC-------CCcCHHHHHHHHHHHHHHHHhCC--------CCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 4899999999998 48999999999999999997541 12469999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|.+|||+++|++ +++++++||||
T Consensus 67 G~~V~~~g~~pTP~~~~a~--~~~~~~gGI~I 96 (446)
T PRK14324 67 GYNVIQIGPMPTPAIAFLT--EDMRCDAGIMI 96 (446)
T ss_pred CCeEEEecCccHHHHHHHH--hhcCCceEEEE
Confidence 9999999999999999999 67899999998
No 7
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=3.2e-22 Score=182.51 Aligned_cols=96 Identities=28% Similarity=0.354 Sum_probs=87.8
Q ss_pred hhcccccceeeeeccCCCCCCCC-CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVD-LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~d-LTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~ 150 (185)
+.+|+++||||+++ ++ |||+++.++|+|||+++.++. ...+|+||||+|.+|++|++++++||+
T Consensus 3 ~~~Fg~~giRG~~~-------~~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~ 67 (448)
T PRK14315 3 RKYFGTDGIRGRAN-------TFPMTAELALRVGQAAGLYFRRGD--------HRHRVVIGKDTRLSGYMIENALVAGFT 67 (448)
T ss_pred CcEECCCCceecCC-------CCCCCHHHHHHHHHHHHHhHhhcC--------CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999998 47 999999999999999998541 124799999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 151 s~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
+.|++|+++|++|||+++|++ +++++++||||
T Consensus 68 s~G~~V~~~g~~pTP~~~~a~--~~~~~~gGi~I 99 (448)
T PRK14315 68 SVGMDVLLLGPIPTPAVAMLT--RSMRADLGVMI 99 (448)
T ss_pred HCCCeEEEeCCcccHHHHHHH--HhcCCCEEEEE
Confidence 999999999999999999999 57899999998
No 8
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=3.8e-22 Score=181.84 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=87.0
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||++++ .+|||+++.++|+|||+++.++ + ....|+||||+|.+|++|++++++||++.
T Consensus 3 ~~Fgt~giRG~~~~------~~ltpe~~~~lg~a~g~~l~~~-----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 68 (443)
T PRK14320 3 KYFGTDGIRGEVAN------STITVEFTQKLGNAVGSLINQK-----N---YPKFVIVGQDTRSSGGFLKFALVSGLNAA 68 (443)
T ss_pred cccCCCCeeeEcCC------CCCCHHHHHHHHHHHHHhHhhC-----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 68999999999963 4799999999999999998643 1 12459999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ ++++++|||||
T Consensus 69 G~~V~d~g~~pTP~~~~av--~~~~~~gGI~I 98 (443)
T PRK14320 69 GIDVLDLGVVPTPVVAFMT--VKHRAAAGFVI 98 (443)
T ss_pred CCEEEEecccCchHHHHHH--HHcCCceEEEE
Confidence 9999999999999999999 67899999998
No 9
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.87 E-value=4.6e-22 Score=180.93 Aligned_cols=93 Identities=37% Similarity=0.627 Sum_probs=86.5
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
+|+++||||+++ ++|||+++.++|+|||+++.+.. ..+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fg~~giRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~---------~~~VvVg~D~R~~s~~~~~a~~~gL~s~G 64 (443)
T cd03089 1 IFRAYDIRGIAG-------EELTEEIAYAIGRAFGSWLLEKG---------AKKVVVGRDGRLSSPELAAALIEGLLAAG 64 (443)
T ss_pred CCcccccceeeC-------CccCHHHHHHHHHHHHHHHHhcC---------CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 699999999998 48999999999999999997531 24699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++|++|||+++|++ +++++++||||
T Consensus 65 ~~V~~~g~~pTP~~~~~v--~~~~a~gGI~I 93 (443)
T cd03089 65 CDVIDIGLVPTPVLYFAT--FHLDADGGVMI 93 (443)
T ss_pred CcEEEeCCcchHHHHHHH--hccCCCeEEEE
Confidence 999999999999999999 68899999998
No 10
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=4.7e-22 Score=182.34 Aligned_cols=97 Identities=27% Similarity=0.256 Sum_probs=87.8
Q ss_pred hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
+.+|+++||||+++ ++|||+++.++|+|+|+++.++. + ...+|+||||+|.+|++|++++++||++
T Consensus 16 ~~~Fgt~GIRG~~~-------~~ltpe~a~~lg~a~g~~l~~~~----~---~~~~VvVG~D~R~ss~~l~~a~~~gL~s 81 (465)
T PRK14317 16 SPLFGTDGIRGKVG-------ELLTAPLALQVGFWAGQVLRQTA----P---GEGPVLIGQDSRNSSDMLAMALAAGLTA 81 (465)
T ss_pred CCeecCCCeeeEeC-------cccCHHHHHHHHHHHHHHHHhcc----C---CCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46899999999998 48999999999999999996531 0 1246999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
+|++|+++|++|||+++|++ +++++++||||
T Consensus 82 ~Gv~V~~~g~~pTP~~~~av--~~~~~~gGI~I 112 (465)
T PRK14317 82 AGREVWHLGLCPTPAVAYLT--RKSEAIGGLMI 112 (465)
T ss_pred CCCeEEEecccCcHHHHHHH--HhcCCCEEEEE
Confidence 99999999999999999999 67899999998
No 11
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=4.7e-22 Score=181.45 Aligned_cols=99 Identities=34% Similarity=0.388 Sum_probs=87.6
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.++|+|||+++.++... + ....+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fg~~giRG~~~-------~~ltpe~~~~lg~a~~~~l~~~~~~--~--~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 71 (448)
T PRK14318 3 RLFGTDGVRGLAN-------RDLTAELALALGAAAARVLGHAGRP--G--GRRPVAVVGRDPRASGEFLEAAVSAGLASA 71 (448)
T ss_pred cccCCCCcceecC-------CccCHHHHHHHHHHHHHHHHhcccc--c--CCCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 6899999999998 4899999999999999999753100 0 012569999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ +++++++||||
T Consensus 72 G~~V~~~g~~pTP~~~~av--~~~~~~gGI~I 101 (448)
T PRK14318 72 GVDVLRVGVLPTPAVAYLT--AALDADFGVMI 101 (448)
T ss_pred CCEEEEecccCchHHHHHH--HhcCCCEEEEE
Confidence 9999999999999999999 67899999998
No 12
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=6.3e-22 Score=180.72 Aligned_cols=98 Identities=26% Similarity=0.294 Sum_probs=88.4
Q ss_pred hhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 029919 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (185)
Q Consensus 71 ~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~ 150 (185)
++.+|+++||||+++. ++|||+++.+||+|||+++..+. ...+|+||||.|.+|++|+++++++|+
T Consensus 2 ~~~~Fgt~GiRG~~~~------~~lt~e~~~~l~~a~~~~l~~~~--------~~~~VvVg~D~R~~s~~l~~a~~~gL~ 67 (450)
T PRK14314 2 MKKLFGTDGVRGRANV------YPMTAEMALQLGRAAAYVFRNGS--------GRHRVVIGKDTRLSGYMFENALIAGLC 67 (450)
T ss_pred CCceeCCCCcceecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCcEEEEeCCCcChHHHHHHHHHHHH
Confidence 3579999999999973 24999999999999999997541 124799999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 151 s~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|++|+++|.+|||+++|++ ++++++|||||
T Consensus 68 s~Gv~V~~~g~~ptP~~~~a~--~~~~~~gGI~i 99 (450)
T PRK14314 68 SMGVDVLLVGPLPTPGIAFIT--RSMRADAGVVI 99 (450)
T ss_pred HCCCeEEEecccCCHHHHHHH--HhcCCCEEEEE
Confidence 999999999999999999999 67899999998
No 13
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.87 E-value=6.5e-22 Score=180.32 Aligned_cols=96 Identities=34% Similarity=0.404 Sum_probs=87.2
Q ss_pred hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
+.+|+++||||+++. ++|||+++.++|+|||+++.++ + ..+|+||||+|.+|++|++++++||++
T Consensus 1 ~~~Fgt~GiRG~~~~------~~ltpe~~~~lg~a~a~~l~~~-----~----~~~VvVg~D~R~ss~~l~~a~~~gL~s 65 (443)
T PRK10887 1 RKYFGTDGIRGKVGQ------APITPDFVLKLGWAAGKVLARQ-----G----RPKVLIGKDTRISGYMLESALEAGLAA 65 (443)
T ss_pred CCccCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhC-----C----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999973 2699999999999999999753 1 246999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
.|++|+++|.+|||+++|++ +.++++|||||
T Consensus 66 ~Gv~V~~~g~~pTP~~~~a~--~~~~~~gGI~I 96 (443)
T PRK10887 66 AGVDVLLTGPMPTPAVAYLT--RTLRAEAGIVI 96 (443)
T ss_pred CCCeEEEECCcChHHHHHHH--HHcCCCEEEEE
Confidence 99999999999999999999 57899999998
No 14
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.87 E-value=3.4e-22 Score=181.70 Aligned_cols=91 Identities=23% Similarity=0.335 Sum_probs=85.0
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
+|+++||||+++ ++|||+++.++|+|||+++.++ .+|+||||+|.+|++|++++++||++.|
T Consensus 1 ~Fgt~giRG~~~-------~~lt~~~~~~lg~a~~~~l~~~-----------~~VvVG~D~R~ss~~~~~a~~~gL~s~G 62 (441)
T cd05805 1 LFGGRGVSGLIN-------VDITPEFATRLGAAYGSTLPPG-----------STVTVSRDASRASRMLKRALISGLLSTG 62 (441)
T ss_pred CCCCCCceEEeC-------CCCCHHHHHHHHHHHhhcCCCC-----------CEEEEEcCCChhHHHHHHHHHHHHHhCC
Confidence 699999999998 4899999999999999988532 4699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++|.+|||+++|++ +++++++||||
T Consensus 63 ~~V~~~g~~pTP~~~~av--~~~~~~gGi~I 91 (441)
T cd05805 63 VNVRDLGALPLPVARYAI--RFLGASGGIHV 91 (441)
T ss_pred CeEEecCCcCchHHHHHH--HhcCCCeeEEE
Confidence 999999999999999999 67899999998
No 15
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.87 E-value=6.2e-22 Score=181.34 Aligned_cols=91 Identities=26% Similarity=0.401 Sum_probs=85.4
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.++|+|||+++.. .+|+||||+|.+|++|+++++++|++.
T Consensus 5 ~~Fg~~GiRG~~~-------~~lt~~~~~~~~~a~a~~l~~------------~~VvVg~D~R~ss~~l~~a~a~gL~s~ 65 (456)
T PRK15414 5 TCFKAYDIRGKLG-------EELNEDIAWRIGRAYGEFLKP------------KTIVLGGDVRLTSETLKLALAKGLQDA 65 (456)
T ss_pred ceecccCcceeeC-------CCcCHHHHHHHHHHHHHHhcC------------CeEEEEECCCCChHHHHHHHHHHHHHC
Confidence 5899999999998 489999999999999999852 269999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ +++++++||||
T Consensus 66 Gi~V~~~g~~pTP~~~~av--~~~~~~gGI~I 95 (456)
T PRK15414 66 GVDVLDIGMSGTEEIYFAT--FHLGVDGGIEV 95 (456)
T ss_pred CCeEEEeCCcChHHHHHhh--hccCCCeEEEE
Confidence 9999999999999999999 68899999998
No 16
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.86 E-value=1.1e-21 Score=178.78 Aligned_cols=94 Identities=29% Similarity=0.471 Sum_probs=86.6
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
+|+++||||+++ ++|||+++.++|+|||+|+.++. ...+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~f~~~GiRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~--------~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G 65 (445)
T cd05803 1 IISISGIRGIVG-------EGLTPEVITRYVAAFATWQPERT--------KGGKIVVGRDGRPSGPMLEKIVIGALLACG 65 (445)
T ss_pred CCCcCceeeecC-------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 599999999998 48999999999999999998541 124799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++|.+|||+++|++ +++++++||||
T Consensus 66 ~~V~~~g~~pTP~~~~a~--~~~~~~~GI~I 94 (445)
T cd05803 66 CDVIDLGIAPTPTVQVLV--RQSQASGGIII 94 (445)
T ss_pred CeEEEeCCCCchHHHHHH--HHhCCCeeEEE
Confidence 999999999999999999 57899999998
No 17
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.86 E-value=1.7e-21 Score=177.38 Aligned_cols=95 Identities=32% Similarity=0.320 Sum_probs=85.9
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCC
Q 029919 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (185)
Q Consensus 75 F~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi 154 (185)
|+++||||++++ ++|||+++.++|+|||+++.++. .....|+||||+|.+|++|++++++||++.|+
T Consensus 1 Fgt~giRG~~~~------~~ltp~~~~~l~~a~~~~l~~~~-------~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~ 67 (443)
T TIGR01455 1 FGTDGVRGRAGQ------EPLTAELALLLGAAAGRVLRQGR-------DTAPRVVIGKDTRLSGYMLENALAAGLNSAGV 67 (443)
T ss_pred CCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEEeCCCcChHHHHHHHHHHHHHCCC
Confidence 889999999973 47999999999999999997641 01236999999999999999999999999999
Q ss_pred eEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 155 LVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 155 ~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
+|+++|.+|||+++|++ ++++++|||||
T Consensus 68 ~V~~~g~~pTP~~~~av--~~~~~~gGI~i 95 (443)
T TIGR01455 68 DVLLLGPLPTPAVAYLT--RTLRADAGVMI 95 (443)
T ss_pred eEEEeCCcCcHHHHHHH--HhcCCCeEEEE
Confidence 99999999999999999 67899999998
No 18
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.85 E-value=1.6e-21 Score=178.16 Aligned_cols=91 Identities=31% Similarity=0.399 Sum_probs=85.6
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.++|+|||+++.. .+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fgt~GiRG~~~-------~~lt~e~~~~lg~a~~~~l~~------------~~VvVg~D~R~~s~~l~~a~~~gL~s~ 63 (449)
T PRK14321 3 KYFGTSGIREVVN-------EKLTPELALKVGLALGTYLGG------------GKVVVGKDTRTSSEMLKNALISGLLST 63 (449)
T ss_pred cccccCCeeEEcC-------CCCCHHHHHHHHHHHHhhccC------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 6899999999998 489999999999999999852 259999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ +++++++||||
T Consensus 64 G~~V~~~g~~pTP~~~~av--~~~~~~gGI~I 93 (449)
T PRK14321 64 GVDVIDIGLAPTPLTGFAI--KLYNADAGVTI 93 (449)
T ss_pred CCeEEEeCCcCCcHHHHHH--HhcCCCeEEEE
Confidence 9999999999999999999 67899999998
No 19
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.7e-21 Score=177.64 Aligned_cols=94 Identities=36% Similarity=0.521 Sum_probs=87.8
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ .+||++++.++|.|+|+|+.+. + .++|+||||+|.+|++|+.++++||+++
T Consensus 8 ~~FGT~GiRG~~~-------~~lt~~~~~~~g~a~~~~l~~~-----~----~~~VvVG~D~R~ss~~~~~a~~~gl~~~ 71 (464)
T COG1109 8 LLFGTDGIRGVAG-------EELTPEFALKLGRALGSVLRKK-----G----APKVVVGRDTRLSSEMLAAALAAGLTSA 71 (464)
T ss_pred ceECCCccccccC-------CCcCHHHHHHHHHHHHHHHhhc-----C----CCeEEEEecCCCCHHHHHHHHHHHHHHC
Confidence 5899999999998 4899999999999999999862 1 2689999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ +++++++||||
T Consensus 72 G~~v~~~g~~pTP~~~f~~--~~~~~~~gvmI 101 (464)
T COG1109 72 GIDVYDLGLVPTPAVAFAT--RKLGADAGVMI 101 (464)
T ss_pred CCeEEEeCCCCCHHHHHHH--HhcCCCeEEEE
Confidence 9999999999999999999 68999999998
No 20
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.85 E-value=1.5e-21 Score=177.32 Aligned_cols=90 Identities=33% Similarity=0.367 Sum_probs=82.6
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.+||.|||+++.. .+|+||||+|.+|++|++++++||++.
T Consensus 4 ~~Fg~~gIRG~~~-------~~ltpe~~~~lg~a~~~~l~~------------~~VvVg~D~R~ss~~l~~a~~~gL~s~ 64 (429)
T PRK14322 4 KYFGTDGIRGVFG-------ETLTDELAFKVGKALGEIVGE------------GKVIVGKDTRVSGDSLEAAISAGLTSM 64 (429)
T ss_pred ceecCCCcceecC-------CCcCHHHHHHHHHHHhEEecC------------CcEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 4799999999998 489999999999999998742 139999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ ++++ ++||||
T Consensus 65 G~~V~~~g~~pTP~~~~av--~~~~-~gGI~I 93 (429)
T PRK14322 65 GVDVLLCGILPTPAVALLT--RITR-SFGVVI 93 (429)
T ss_pred CCeEEEecCcCHHHHHHHH--hccC-CceEEE
Confidence 9999999999999999999 4565 999998
No 21
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.85 E-value=3.6e-21 Score=175.68 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=86.2
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
.|+++||||+++ ++|||+++.++|+|||+++.+.. . ...+|+||||+|.+|++|++++++||++.|
T Consensus 2 ~Fgt~GiRG~~~-------~~lt~~~~~~lg~a~~~~l~~~~----~---~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G 67 (461)
T cd05800 2 KFGTDGWRGIIA-------EDFTFENVRRVAQAIADYLKEEG----G---GGRGVVVGYDTRFLSEEFARAVAEVLAANG 67 (461)
T ss_pred CccCcccccccc-------CCccHHHHHHHHHHHHHHHHHhC----C---CCCeEEEEeCCCcCcHHHHHHHHHHHHHCC
Confidence 599999999998 48999999999999999997531 0 125699999999999999999999999999
Q ss_pred CeEEEe-ccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDM-GLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~-Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++ |.+|||+++|++ ++++++|||||
T Consensus 68 ~~V~~~~g~~pTP~~~~a~--~~~~~~gGI~I 97 (461)
T cd05800 68 IDVYLSDRPVPTPAVSWAV--KKLGAAGGVMI 97 (461)
T ss_pred CEEEEcCCCCCchHHHHHH--HHhCCCeeEEE
Confidence 999999 799999999999 57899999998
No 22
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.84 E-value=4.9e-21 Score=173.82 Aligned_cols=89 Identities=38% Similarity=0.589 Sum_probs=83.5
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
+|+++||||+++ ++|||+++.++|.|||+++. + .+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~giRG~~~-------~~lt~~~~~~l~~a~~~~l~-~-----------~~VvVg~D~R~~s~~l~~a~~~gL~~~G 61 (439)
T cd03087 1 LFGTSGIRGVVG-------EELTPELALKVGKALGTYLG-G-----------GTVVVGRDTRTSGPMLKNAVIAGLLSAG 61 (439)
T ss_pred CcCcCceeeECC-------CCcCHHHHHHHHHHHHhhcc-C-----------CeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 699999999998 48999999999999999986 2 3699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++|++|||+++|++ ++++ +|||||
T Consensus 62 ~~V~~~g~~~tP~~~~~v--~~~~-~gGi~I 89 (439)
T cd03087 62 CDVIDIGIVPTPALQYAV--RKLG-DAGVMI 89 (439)
T ss_pred CeEEEcCccChHHHHHHH--HhcC-CceEEE
Confidence 999999999999999999 5788 999998
No 23
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.84 E-value=7.7e-21 Score=173.53 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=82.8
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCC
Q 029919 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (185)
Q Consensus 75 F~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi 154 (185)
|+++||||+++ ++|||+++.++|+|||+++.+.. ..+|+||||+|.+|++|+++++++|++.|+
T Consensus 1 f~~~giRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~---------~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~ 64 (445)
T PRK09542 1 IKAYDVRGVVG-------EQIDEDLVRDVGAAFARLMRAEG---------ATTVVIGHDMRDSSPELAAAFAEGVTAQGL 64 (445)
T ss_pred CCccccccccC-------CCcCHHHHHHHHHHHHHHHHHcC---------CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC
Confidence 78999999998 48999999999999999997531 246999999999999999999999999999
Q ss_pred eEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 155 LVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 155 ~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
+|+++|++|||+++|++ +++++ +||||
T Consensus 65 ~V~~lg~~pTP~~~~av--~~~~~-~Gi~i 91 (445)
T PRK09542 65 DVVRIGLASTDQLYFAS--GLLDC-PGAMF 91 (445)
T ss_pred EEEEeCCCCCHHHHhee--cccCC-CEEEE
Confidence 99999999999999999 67888 57776
No 24
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.83 E-value=1.2e-20 Score=171.49 Aligned_cols=89 Identities=34% Similarity=0.415 Sum_probs=80.9
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++ ++|||+++.+||+|||+++. .+|+||||+|.+|++|++++++||++.
T Consensus 2 ~~Fgt~gIRG~~~-------~~ltpe~~~~lg~a~g~~~~-------------~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 61 (430)
T PRK14319 2 RLFGTDGIRGVVN-------EFLTPEIAFRLGNALGNMVD-------------KKIFIAKDTRASGDMLEAALVAGITSA 61 (430)
T ss_pred cccCCCCcceecC-------CCcCHHHHHHHHHHHHhccC-------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 4899999999998 48999999999999999874 149999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++|++|||+++|++ +.. +.|||||
T Consensus 62 G~~V~d~g~~pTP~~~~~~--~~~-~~gGi~I 90 (430)
T PRK14319 62 GADVYRCGVLPTPALALIT--KLE-DAAGVMI 90 (430)
T ss_pred CCeEEEeCCcCcHHHHHHH--hcc-CceEEEE
Confidence 9999999999999999976 334 4599998
No 25
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=174.17 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=86.2
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
.|+++||||++++| ...+|+..+.++++|||+|+.+.. +......+|+||||+|.+|++|+++++++|+++|
T Consensus 46 ~FGT~GiRG~~g~~----~~~~n~~~v~~~~~a~a~~l~~~~----~~~~~~~~VvVg~D~R~~S~~fa~~~a~~L~a~G 117 (584)
T PTZ00150 46 EFGTAGLRGKMGAG----FNCMNDLTVQQTAQGLCAYVIETF----GQALKSRGVVIGYDGRYHSRRFAEITASVFLSKG 117 (584)
T ss_pred cccCcccccccCCC----CcHHHHHHHHHHHHHHHHHHHHhc----ccccCCCcEEEEeCCCCCcHHHHHHHHHHHHHCC
Confidence 58889999999853 135888889999999999997642 1000124699999999999999999999999999
Q ss_pred CeEEEec-cCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMG-LATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~G-l~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++| ++|||+++|++ ++++++|||||
T Consensus 118 i~V~~~g~~~pTP~lsfav--~~~~a~gGImI 147 (584)
T PTZ00150 118 FKVYLFGQTVPTPFVPYAV--RKLKCLAGVMV 147 (584)
T ss_pred CEEEEeCCCCCcHHHHHHH--HHhCCCeEEEE
Confidence 9999997 99999999999 68999999998
No 26
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=99.82 E-value=6.8e-20 Score=172.14 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=84.1
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
..|+++||||+++ ++||++++.++|+|++.++.+.. . ...+|+||||+|.+|++|+++++++|+++
T Consensus 11 ~~Fgt~giRG~~~-------~~l~~~~~~~~~~a~~~~~~~~~----~---~~~~VvVG~D~R~~S~~~a~~~a~~L~~~ 76 (548)
T cd03085 11 QKPGTSGLRKKVK-------VFQQPNYLENFVQSIFNALPPEK----L---KGATLVVGGDGRYYNKEAIQIIIKIAAAN 76 (548)
T ss_pred CCCCcccccEeec-------cccCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcChHHHHHHHHHHHHHC
Confidence 4799999999997 47999999999998866664321 0 11269999999999999999999999999
Q ss_pred CCeEEEe---ccCChhHHHHhhhCCCCCCceeEEe
Q 029919 153 GCLVFDM---GLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 153 Gi~V~d~---Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
|++|+++ |++|||+++|++ ++++++|||||
T Consensus 77 G~~V~~~~~~G~~pTP~l~fav--~~~~a~gGImI 109 (548)
T cd03085 77 GVGKVVVGQNGLLSTPAVSAVI--RKRKATGGIIL 109 (548)
T ss_pred CCeEEEeCCCCccCchHHHHHH--HhcCCCeEEEE
Confidence 9999999 899999999999 68999999998
No 27
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.81 E-value=5.8e-20 Score=168.97 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=86.8
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
.|+++||||+++++ ..+||++++.+||+|||+++.+.. + .....+|+||||+|.+|++|+++++++|+++|
T Consensus 3 ~Fgt~giRg~~~~~----~~~l~~~~~~~l~~a~~~~l~~~~----~-~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~G 73 (487)
T cd05799 3 EFGTAGLRGKMGAG----TNRMNDYTVRQATQGLANYLKKKG----P-DAKNRGVVIGYDSRHNSREFAELTAAVLAANG 73 (487)
T ss_pred cccCcccccccCCC----CccccHHHHHHHHHHHHHHHHHhc----c-cccCCeEEEEcCCCCChHHHHHHHHHHHHHCC
Confidence 59999999999852 125999999999999999997541 0 00124699999999999999999999999999
Q ss_pred CeEEEec-cCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMG-LATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~G-l~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++| .+|||+++|++ ++++++|||||
T Consensus 74 i~V~~~g~~~ptP~~~~~i--~~~~~~gGI~i 103 (487)
T cd05799 74 IKVYLFDDLRPTPLLSFAV--RHLGADAGIMI 103 (487)
T ss_pred CEEEEeCCCCCCcHHHHHH--HHhCCCeeEEE
Confidence 9999999 99999999999 57899999998
No 28
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.81 E-value=7.1e-20 Score=167.78 Aligned_cols=92 Identities=29% Similarity=0.355 Sum_probs=82.0
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
.|+++||||++. +|||+++.++|+|||+++.... ....|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~GiRG~~~--------~ltpe~~~~l~~a~~~~l~~~~--------~~~~VvVG~D~R~~s~~l~~a~~~gL~~~G 64 (459)
T cd03088 1 KFGTSGLRGLVT--------DLTDEVCYAYTRAFLQHLESKF--------PGDTVAVGRDLRPSSPRIAAACAAALRDAG 64 (459)
T ss_pred CCCCcccceeec--------cCCHHHHHHHHHHHHHHHHHhC--------CCCeEEEEeCCCcchHHHHHHHHHHHHHCC
Confidence 389999999983 7999999999999999997531 124699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 154 i~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
++|+++|++|||+++|++. ++++ +||||
T Consensus 65 v~V~~~g~~pTP~~~~a~~--~~~~-ggI~I 92 (459)
T cd03088 65 FRVVDCGAVPTPALALYAM--KRGA-PAIMV 92 (459)
T ss_pred CEEEEeCCCCCHHHHHHHH--HcCC-cEEEE
Confidence 9999999999999999994 5665 89998
No 29
>PRK07564 phosphoglucomutase; Validated
Probab=99.81 E-value=8.4e-20 Score=170.88 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=85.3
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++. .+||++++.++++|||+|+.+. + .+.+|+||||+|.+|++|+++++++|+++
T Consensus 38 ~~FGT~GiRg~~~~------~~lt~~~v~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~~S~~~a~a~a~gL~s~ 103 (543)
T PRK07564 38 VKFGTSGHRGSSLQ------PSFNENHILAIFQAICEYRGKQ-----G---ITGPLFVGGDTHALSEPAIQSALEVLAAN 103 (543)
T ss_pred CCCcccccccccCC------CCcCHHHHHHHHHHHHHHHHhc-----C---CCCeEEEEecCCcCCHHHHHHHHHHHHHC
Confidence 47999999999963 3699999999999999999753 1 12369999999999999999999999999
Q ss_pred CCeEEEe---ccCChhHHHHhhhCCCCC-----CceeEEe
Q 029919 153 GCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMG 184 (185)
Q Consensus 153 Gi~V~d~---Gl~pTP~l~yav~~~~~~-----adgGIMI 184 (185)
|++|+++ |++|||+++|++ ++++ ++|||||
T Consensus 104 Gi~V~~~~~~g~~pTP~~~~av--~~~~~~~~~~~gGImI 141 (543)
T PRK07564 104 GVGVVIVGRGGYTPTPAVSHAI--LKYNGRGGGLADGIVI 141 (543)
T ss_pred CCEEEEeCCCCcCCchHHHHHH--HHhCCCccccceeEEE
Confidence 9999965 899999999999 5788 9999998
No 30
>PLN02307 phosphoglucomutase
Probab=99.81 E-value=9.9e-20 Score=172.20 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=84.1
Q ss_pred hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
+.+|+++||||+++ ++||++++.++|+|++.++.+.. . ....|+||||+|.+|++|+++++++|++
T Consensus 22 ~~~FGT~GiRG~~~-------~~l~~~~~~~ig~a~~~~~~~~~----~---~~~~VvVG~D~R~~S~~fa~~~a~~L~a 87 (579)
T PLN02307 22 GQKPGTSGLRKKVK-------VFMQENYLANFVQALFNALPAEK----V---KGATLVLGGDGRYFNKEAIQIIIKIAAA 87 (579)
T ss_pred CCCCcCcccccccc-------ccCCHHHHHHHHHHHHHHHHhcC----C---CCCeEEEEeCCCcchHHHHHHHHHHHHH
Confidence 34899999999986 47999999999998866664321 0 1235999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhCCCC---CCceeEEe
Q 029919 152 AGCLVFDM---GLATTPACFMSTLLPPF---AYDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~---Gl~pTP~l~yav~~~~~---~adgGIMI 184 (185)
+|++|+++ |++|||+++|++ +++ ++++||||
T Consensus 88 ~Gi~V~~~~~~G~~PTP~vsfav--~~~~~~~a~gGImI 124 (579)
T PLN02307 88 NGVRRVWVGQNGLLSTPAVSAVI--RERDGSKANGGFIL 124 (579)
T ss_pred CCCEEEEeCCCCccCchHHHHHH--HHhcccCCCeEEEE
Confidence 99999999 799999999999 678 89999998
No 31
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.81 E-value=1e-19 Score=170.34 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=84.8
Q ss_pred hhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 72 ~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
..+|+++||||++++ .+||++++.++|+||++++.+. + ...+|+||||+|.+|++|++++++||++
T Consensus 38 ~~~FGT~GiRG~~~~------~~lt~~~~~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~sS~~~~~a~a~gL~s 103 (543)
T TIGR01132 38 AVKFGTSGHRGSALR------GTFNEPHILAIAQAIAEYRAAQ-----G---ITGPLYIGKDTHALSEPAFISVLEVLAA 103 (543)
T ss_pred ccCCcCccccCCccc------CccCHHHHHHHHHHHHHHHHHh-----C---CCCcEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 458999999999873 3699999999999999998754 2 1134999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhCCCCC-----CceeEEe
Q 029919 152 AGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~---Gl~pTP~l~yav~~~~~~-----adgGIMI 184 (185)
+|++|+++ |++|||+++|++ ++++ +++||||
T Consensus 104 ~Gi~V~~~~~~G~~pTP~~~~av--~~~~~~~~~~~gGI~I 142 (543)
T TIGR01132 104 NGVEVIVQENNGFTPTPAVSHAI--LTHNKKGEPLADGIVI 142 (543)
T ss_pred CCCEEEEeCCCCcCCchHHHHHH--HHhcccccccceEEEE
Confidence 99999994 899999999999 4555 7889998
No 32
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.77 E-value=9.7e-19 Score=162.96 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=82.6
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.+|+++||||+++. .+||++++.++++|||+|+.+.. ....|+||||+|..|.+++++++++|+++
T Consensus 21 ~~FGT~GiRG~~g~------~~lt~~~v~~i~~a~~~~l~~~~--------~~~~VvVg~D~R~~S~~~~~~~~~gL~s~ 86 (522)
T cd05801 21 VAFGTSGHRGSSLK------GSFNEAHILAISQAICDYRKSQG--------ITGPLFLGKDTHALSEPAFISALEVLAAN 86 (522)
T ss_pred eeEEcccccCccCC------CchhHHHHHHHHHHHHHHHHhhC--------CCCeEEEEeCCCcCCHHHHHHHHHHHHHC
Confidence 48999999999873 36999999999999999997541 11359999999998888888888999999
Q ss_pred CCeEEE---eccCChhHHHHhhhCCCCCCc------eeEEe
Q 029919 153 GCLVFD---MGLATTPACFMSTLLPPFAYD------ASIMG 184 (185)
Q Consensus 153 Gi~V~d---~Gl~pTP~l~yav~~~~~~ad------gGIMI 184 (185)
|++|++ +|++|||+++|++ ++++++ |||||
T Consensus 87 Gi~V~~~~~~g~~pTP~~~~av--~~~~~~~~~~~~gGI~I 125 (522)
T cd05801 87 GVEVIIQQNDGYTPTPVISHAI--LTYNRGRTEGLADGIVI 125 (522)
T ss_pred CCEEEEeCCCCCCCchHHHHHH--HHhccccccCCCcEEEE
Confidence 999995 7999999999999 567776 49998
No 33
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=5.1e-16 Score=145.77 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=88.2
Q ss_pred hc-ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029919 73 RL-QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (185)
Q Consensus 73 ~L-F~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s 151 (185)
++ |++.|+||.+..| ...+|+..+.+++++|++|+.+.. + ..+..|+||||.|.+|..|+++++.+|..
T Consensus 59 Ri~fgt~GlRg~m~ag----f~~mnel~~iq~~qg~a~yl~~~~----~--~~~~giviG~D~R~~S~~fA~l~a~vf~~ 128 (607)
T KOG1220|consen 59 RIKFGTAGLRGEMRAG----FSRMNELTAIQFGQGLAAYLKNQF----P--SKNLGIVIGHDGRYNSKRFAELVAAVFLL 128 (607)
T ss_pred ceeeeccccccccccC----chhhhHHHHHHHHHHHHHHHHHhC----C--cccceEEEecCCccchHHHHHHHHHHHHh
Confidence 44 8888888888765 247999999999999999999874 2 12357999999999999999999999999
Q ss_pred CCCeEEEec-cCChhHHHHhhhCCCCCCceeEEe
Q 029919 152 AGCLVFDMG-LATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 152 ~Gi~V~d~G-l~pTP~l~yav~~~~~~adgGIMI 184 (185)
+|++|++++ ++|||.+.|++. .++|++||||
T Consensus 129 ~g~~v~lf~~~v~TP~vpfav~--~l~~dAgIMi 160 (607)
T KOG1220|consen 129 NGFKVYLFSELVPTPFVPFAVL--TLGADAGIMI 160 (607)
T ss_pred CCceEEEeccccCCCcchhHHH--HhccCceEEE
Confidence 999999998 999999999994 6999999998
No 34
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.93 E-value=1.3e-09 Score=103.50 Aligned_cols=48 Identities=38% Similarity=0.566 Sum_probs=46.4
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhh
Q 029919 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTL 172 (185)
Q Consensus 125 ~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~ 172 (185)
..+|+||||+|.||+.|++++++||.+.|++|+|+|++|||+++|++.
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~G~~tTP~l~~~v~ 174 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDMGILTTPQLHWMVR 174 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEeCcCCcHHHHHHHH
Confidence 568999999999999999999999999999999999999999999995
No 35
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.91 E-value=1.9e-09 Score=101.28 Aligned_cols=54 Identities=35% Similarity=0.492 Sum_probs=49.6
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCCCce
Q 029919 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDA 180 (185)
Q Consensus 125 ~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~adg 180 (185)
..+|+||||+|.+|++|+++++++|.+.|++|+|+|.+|||+++|++ +.+++.+
T Consensus 102 ~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~g~~~TP~~~~~v--~~~~~~g 155 (513)
T cd03086 102 PANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLV--RAANTEG 155 (513)
T ss_pred CCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEccCcCcHHHHHHH--HhcCCCC
Confidence 46899999999999999999999999999999999999999999999 4566653
No 36
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.89 E-value=2.2e-09 Score=102.39 Aligned_cols=48 Identities=35% Similarity=0.537 Sum_probs=46.0
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHH-hCCCeEEEeccCChhHHHHhhh
Q 029919 125 DVKVSLGKDPRVSGPSLSVAVFAGLA-RAGCLVFDMGLATTPACFMSTL 172 (185)
Q Consensus 125 ~~~VvVGrD~R~SS~~la~ava~gL~-s~Gi~V~d~Gl~pTP~l~yav~ 172 (185)
...|+||||+|.||++|++++++||+ +.|++|+|+|++|||+++|++.
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~G~~tTP~l~y~v~ 200 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNFGIVTTPQLHFLVA 200 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEeCCCCcHHHHHHHH
Confidence 46799999999999999999999999 9999999999999999999994
No 37
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=7.1e-09 Score=95.96 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=82.0
Q ss_pred hcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029919 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (185)
Q Consensus 73 ~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~ 152 (185)
.-|++||.||.... -.+++..+..+.+|+.+++.+.. ....++||+|+|..++..-+.++++|+++
T Consensus 16 ~k~GTSG~R~~~~~------~~fne~~i~a~~Qai~d~~~~~~--------~~~~L~vG~D~~~~se~a~~~~lev~aAN 81 (524)
T COG0033 16 VKFGTSGHRGSALV------FTFNENHILAFIQAIADYRAEGG--------IGGPLVVGGDTHALSEPAIQSALEVLAAN 81 (524)
T ss_pred cCCCCccccCcccc------CccCHHHHHHHHHHHHHHHhccC--------CCCceEECCCcccccHHHHHHHHHHHHhc
Confidence 35999999999874 26789999999999999997652 23579999999999999999999999999
Q ss_pred CCeEEEe---ccCChhHHHHhhhCC--CCCCcee-EEe
Q 029919 153 GCLVFDM---GLATTPACFMSTLLP--PFAYDAS-IMG 184 (185)
Q Consensus 153 Gi~V~d~---Gl~pTP~l~yav~~~--~~~adgG-IMI 184 (185)
|++++.. |+.|||+++++++.. ++++-+| |+|
T Consensus 82 gv~~iv~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvl 119 (524)
T COG0033 82 GVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVL 119 (524)
T ss_pred CceEEEecCCCccCchHHHHHHHhhcccccccCCeEEE
Confidence 9998875 799999999999532 4555444 776
No 38
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=2.5e-05 Score=73.49 Aligned_cols=49 Identities=33% Similarity=0.361 Sum_probs=45.7
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhC
Q 029919 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLL 173 (185)
Q Consensus 125 ~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~ 173 (185)
..+|++|||+|.+|+.+.+++..++....+.+.|+|+++||+++|.+..
T Consensus 124 ~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~GvvtTPqLHy~v~~ 172 (539)
T KOG2537|consen 124 SAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRA 172 (539)
T ss_pred cceEEEecCCCCccHHHHHHHHHHHHhhheEecceEEEcchhhhhhhhh
Confidence 4789999999999999999999999888899999999999999999853
No 39
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.0012 Score=61.70 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=67.6
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHH-hhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029919 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVI-RSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (185)
Q Consensus 75 F~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~-~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~G 153 (185)
-+++|.|-.+-. -..|.-.+.+-+|+-+.+. ++ ....+.|||-|.|..+....+.+++.-+++|
T Consensus 18 pGTSGLRKkvkv-------F~qpnY~eNfvQa~~~a~~~~~--------~kgatLVVGGDGRyy~~~a~~~I~~iaAaNG 82 (558)
T KOG0625|consen 18 PGTSGLRKKVKV-------FKQPNYTENFVQAIMNALPGEK--------SKGATLVVGGDGRYYNKEAIQIIAKIAAANG 82 (558)
T ss_pred CCccchhhccee-------ecCCchHHHHHHHHHhcccccc--------ccCceEEEcCCCcchhHHHHHHHHHHHhhcC
Confidence 367899987742 2233334445555555443 22 1236799999999999999999999999999
Q ss_pred CeEEEe---ccCChhHHHHhhhCCCC-CCceeEEe
Q 029919 154 CLVFDM---GLATTPACFMSTLLPPF-AYDASIMG 184 (185)
Q Consensus 154 i~V~d~---Gl~pTP~l~yav~~~~~-~adgGIMI 184 (185)
+.=+.+ |+..||+++..+ |++ .+.|||++
T Consensus 83 v~rlivGqnGiLSTPAvS~iI--Rk~~ka~GGiIL 115 (558)
T KOG0625|consen 83 VGRLIVGQNGILSTPAVSCII--RKYIKAGGGIIL 115 (558)
T ss_pred cceEEeccCCcccchHHHHHH--HhhcccCceEEE
Confidence 986665 799999999988 444 67777864
No 40
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=96.33 E-value=0.0023 Score=56.89 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=28.2
Q ss_pred cccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHH
Q 029919 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEW 110 (185)
Q Consensus 74 LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~ 110 (185)
+|+++||||+++ ++|||+++.++|.|||++
T Consensus 1 ~fg~~gi~G~~n-------~~itpe~~~~lg~a~g~~ 30 (355)
T cd03084 1 IFGTSGVRGVVG-------DDITPETAVALGQAIGST 30 (355)
T ss_pred CCcccCcccccC-------CcCCHHHHHHHHHHHhcc
Confidence 699999999998 599999999999999986
No 41
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=89.05 E-value=1.3 Score=35.37 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=41.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC-----hhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~p-----TP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .+-.+++.+.+-|...|++|.|+|.-. -|.+.+.+.. ..-.++-||+|
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIli 63 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILI 63 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEE
Confidence 58899995 689999999999999999999998766 5555544321 23456778776
No 42
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=88.63 E-value=2.2 Score=34.29 Aligned_cols=56 Identities=27% Similarity=0.286 Sum_probs=41.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-----CChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl-----~pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .+..+++.+.+-|...|++|+|+|. +.-|.+...+.. ....++-||+|
T Consensus 1 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIli 63 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILI 63 (143)
T ss_pred CEEEEeCc--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEE
Confidence 37899985 6899999999999999999999986 234444433321 23456778876
No 43
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=88.61 E-value=2.2 Score=34.24 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=42.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC--hhHHHHhhhC--CCCCCceeEEeC
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT--TPACFMSTLL--PPFAYDASIMGG 185 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~p--TP~l~yav~~--~~~~adgGIMI~ 185 (185)
+|+||-|. .|-.+++.+.+-|.+.|++|+|+|.-+ -|-+...+.. ....++-||+|.
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliC 62 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVD 62 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEc
Confidence 58899995 689999999999999999999999633 3544443321 234567788763
No 44
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=88.54 E-value=2.3 Score=34.22 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=41.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc---CChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl---~pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .|-.+++.+.+-|...|++|+|+|. +--|.+.+.+.. ....++-||+|
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIli 62 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVI 62 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEE
Confidence 58999995 6899999999999999999999986 333554443321 23457778876
No 45
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=88.41 E-value=1.4 Score=40.83 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec-CCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCC
Q 029919 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD-PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFA 177 (185)
Q Consensus 99 ~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD-~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~ 177 (185)
...++..+|-+|..+.. ..+|.|-|| .--+.+.++++++++|+..|++|....+... ..+.-+ +...
T Consensus 229 ~~~~i~~~Y~~W~~~~~---------~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~-~~~eI~--~~i~ 296 (388)
T COG0426 229 NPKEIVEAYRDWAEGQP---------KGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA-DPSEIV--EEIL 296 (388)
T ss_pred CHHHHHHHHHHHHccCC---------cceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC-CHHHHH--HHHh
Confidence 34578888999987542 237999999 5578899999999999999999876543332 222222 2223
Q ss_pred CceeEEeC
Q 029919 178 YDASIMGG 185 (185)
Q Consensus 178 adgGIMI~ 185 (185)
...|++||
T Consensus 297 ~a~~~vvG 304 (388)
T COG0426 297 DAKGLVVG 304 (388)
T ss_pred hcceEEEe
Confidence 35667776
No 46
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=88.18 E-value=2.4 Score=34.12 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=41.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc---CChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl---~pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .|-.+++.+.+-|...|++|.|+|. +.-|.+...+.. ..-.++-||+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIli 62 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVI 62 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEE
Confidence 58999995 6899999999999999999999986 334555544321 23346777776
No 47
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=87.33 E-value=2.5 Score=35.05 Aligned_cols=56 Identities=20% Similarity=0.126 Sum_probs=41.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC-----hhHHHHhhh--CCCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~p-----TP~l~yav~--~~~~~adgGIMI 184 (185)
+|+||-|. .+-.+++.+.+-|.+.|++|.|+|.-. -|.+...+. .....++-||+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIli 64 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCI 64 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEE
Confidence 58999995 689999999999999999999998622 344333322 123456788876
No 48
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=87.09 E-value=2.7 Score=34.06 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=42.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHh--CCCeEEEecc-----CChhHHHHhhhC--CCCCCceeEEe
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLAR--AGCLVFDMGL-----ATTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s--~Gi~V~d~Gl-----~pTP~l~yav~~--~~~~adgGIMI 184 (185)
.+|+||-|. .|..|++.+.+-|.. .|++|+|+|. +.-|.+...+.. ....++-||+|
T Consensus 3 mkI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIli 68 (151)
T PTZ00215 3 KKVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILV 68 (151)
T ss_pred cEEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 579999996 689999999999999 9999999985 334444443321 23446677876
No 49
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=86.40 E-value=3.6 Score=33.26 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=40.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC------ChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA------TTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~------pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .|-.+++.+.+-|...|++|+|+|.- .-|.+...+.. ....++-||+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIli 65 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILI 65 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58999995 68999999999999999999999852 23333333221 23456778876
No 50
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=85.75 E-value=3.8 Score=34.01 Aligned_cols=56 Identities=21% Similarity=0.092 Sum_probs=41.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-----ChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~-----pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .|-.+++.+.+-|...|++|.|+|.- .-|.+.+.+.. ..-.++-||+|
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIli 64 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCI 64 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 58999995 68999999999999999999999863 34554443321 23456788876
No 51
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=85.53 E-value=3.9 Score=33.94 Aligned_cols=56 Identities=21% Similarity=0.048 Sum_probs=41.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-----ChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~-----pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||-|. .|..|++.+.+-|.+.|++|+|+|.- --|.+.+.+.. ....++-||+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIli 64 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCI 64 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEE
Confidence 58999995 68999999999999999999999862 34444443321 23456778876
No 52
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=84.59 E-value=4.7 Score=32.49 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=41.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc------CChhHHHHhhhC--CCCCCceeEEe
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL------ATTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl------~pTP~l~yav~~--~~~~adgGIMI 184 (185)
+|+||.|. .+-.+++.+.+-|...|++|.|+|. ..-|-+...+.. ....++-||+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIli 65 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVI 65 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 58899985 6899999999999999999999985 223444443321 23456778876
No 53
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=83.59 E-value=4.3 Score=32.65 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=39.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-----ChhHHHHhhhC--CCCCCceeEEe
Q 029919 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTLL--PPFAYDASIMG 184 (185)
Q Consensus 128 VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~-----pTP~l~yav~~--~~~~adgGIMI 184 (185)
|+||.|. .|-.+++.+.+-|.+.|++|.|+|.- .-|.+.+.+.. ..-.++-||+|
T Consensus 1 I~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIli 62 (144)
T TIGR00689 1 IAIGSDH--AGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILI 62 (144)
T ss_pred CEEeeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEE
Confidence 4677775 68999999999999999999999862 33443333221 23456778876
No 54
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=82.01 E-value=4.8 Score=32.80 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=30.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~ 162 (185)
+|+||.|. ++..+++.+.+-|.+.|++|+|+|..
T Consensus 2 kIaig~Dh--ag~~lK~~I~~~Lk~~g~~v~D~G~~ 35 (151)
T COG0698 2 KIAIGSDH--AGYELKEIIIDHLKSKGYEVIDFGTY 35 (151)
T ss_pred cEEEEcCc--ccHHHHHHHHHHHHHCCCEEEecccc
Confidence 58899985 79999999999999999999999754
No 55
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=66.12 E-value=32 Score=32.38 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCC-hHHHHHHHHHHHHhC--CCeEEEeccCCh
Q 029919 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS-GPSLSVAVFAGLARA--GCLVFDMGLATT 164 (185)
Q Consensus 99 ~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~S-S~~la~ava~gL~s~--Gi~V~d~Gl~pT 164 (185)
...++-..|-+|.... .+.+|+|-|++... .+.++++++++|... |++|....+.-+
T Consensus 234 ~~~~~l~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~ 293 (479)
T PRK05452 234 NPTQIVELYLKWAADY---------QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS 293 (479)
T ss_pred CHHHHHHHHHHHhhcc---------CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCC
Confidence 3444555566666542 13579999999955 899999999999976 676655444333
No 56
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=63.98 E-value=10 Score=29.89 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred EEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCCCc
Q 029919 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179 (185)
Q Consensus 130 VGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~ad 179 (185)
|+-|..--+. +.++..|..+|++|+|+|..-+|.-..... ...+++
T Consensus 7 v~gD~HdiGk---niv~~~L~~~GfeVidLG~~v~~e~~v~aa-~~~~ad 52 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGFNVVNLGVLSPQEEFIDAA-IETDAD 52 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCCC
Confidence 4456665555 456667889999999999977777665544 344554
No 57
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=61.43 E-value=13 Score=29.51 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=32.5
Q ss_pred EEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCCCc
Q 029919 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179 (185)
Q Consensus 130 VGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~ad 179 (185)
|+-|..--+. +.+...|.++|++|+|+|..-+|.-..... ++.+++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa-~~~~ad 54 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGFNVVNLGVLSPQEEFIKAA-IETKAD 54 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCCC
Confidence 4567776666 446667899999999999987777665544 344554
No 58
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=59.09 E-value=10 Score=34.66 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=49.2
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
.++..|+..+...|- --||+|.+- -+|-+-+...+.++.+ . + -.+|+|+.|.-++|+.
T Consensus 25 ~~ilveg~~d~~~l~-~lgi~g~~i--------~~s~~p~~~cad~ii~----~-----g----i~rVVi~~D~d~~G~~ 82 (360)
T PRK14719 25 IPILVEGPNDILSLK-NLKINANFI--------TVSNTPVFQIADDLIA----E-----N----ISEVILLTDFDRAGRV 82 (360)
T ss_pred CEEEEEcchHHHHHH-HcCCCCcEE--------EEeCCchHHHHHHHHH----c-----C----CCEEEEEECCCCCCCc
Confidence 344555566555544 367877653 2333434443333332 2 2 2579999999999999
Q ss_pred HHHHHHHHHHhCCCeE
Q 029919 141 LSVAVFAGLARAGCLV 156 (185)
Q Consensus 141 la~ava~gL~s~Gi~V 156 (185)
++.-+.+-|.++|++|
T Consensus 83 ~~~~~~~~L~~aGi~V 98 (360)
T PRK14719 83 YAKNIMEEFQSRGIKV 98 (360)
T ss_pred cchHHHHHHHHCCCEE
Confidence 9999999999999999
No 59
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.54 E-value=11 Score=30.43 Aligned_cols=44 Identities=27% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCeEEEE---ecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhh
Q 029919 125 DVKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (185)
Q Consensus 125 ~~~VvVG---rD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav 171 (185)
+++|+|+ -|...-+ ++.++..|++.|++|++.|+..||.=....
T Consensus 12 rprvlvak~GlDgHd~g---akvia~~l~d~GfeVi~~g~~~tp~e~v~a 58 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG---AKVIARALADAGFEVINLGLFQTPEEAVRA 58 (143)
T ss_pred CceEEEeccCccccccc---hHHHHHHHHhCCceEEecCCcCCHHHHHHH
Confidence 4677663 4444333 345678899999999999999999655443
No 60
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=54.02 E-value=36 Score=23.50 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
.+|++..|.-..|...++.+.+-|...|++|..+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4699999999999999999999999999998754
No 61
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=53.09 E-value=47 Score=30.04 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCC-CChHHHHHHHHHHHH--hCCCeEEEecc
Q 029919 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR-VSGPSLSVAVFAGLA--RAGCLVFDMGL 161 (185)
Q Consensus 99 ~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R-~SS~~la~ava~gL~--s~Gi~V~d~Gl 161 (185)
...++-..|-+|.... .+.+|+|-|++. -+.+++++++++++. ..|++|....+
T Consensus 230 ~~~~~~~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~ 286 (394)
T PRK11921 230 NPLQIVEKYLEWAANY---------QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNS 286 (394)
T ss_pred CHHHHHHHHHHHhhcC---------CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEEC
Confidence 3455555677776432 246799999998 477999999999998 77888754443
No 62
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=49.69 E-value=61 Score=25.33 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=30.6
Q ss_pred CeEEEE---ecCCCChHHHHHHHHHHHHhCCCeEEEeccC-ChhHHHHhhhCCCCCCc
Q 029919 126 VKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TTPACFMSTLLPPFAYD 179 (185)
Q Consensus 126 ~~VvVG---rD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~-pTP~l~yav~~~~~~ad 179 (185)
++|+++ -|.+.-+..+ ++..|.+.|++|+++|.. |...+--++ .+.+++
T Consensus 4 ~~vl~~~~~gD~H~lG~~i---v~~~lr~~G~eVi~LG~~vp~e~i~~~a--~~~~~d 56 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKI---LDRALTEAGFEVINLGVMTSQEEFIDAA--IETDAD 56 (137)
T ss_pred CEEEEEeCCCChhHHHHHH---HHHHHHHCCCEEEECCCCCCHHHHHHHH--HHcCCC
Confidence 456555 4666555544 455678999999999974 444444444 344443
No 63
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=45.71 E-value=75 Score=26.68 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=33.0
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhCCCCCCc
Q 029919 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYD 179 (185)
Q Consensus 125 ~~~VvVGr---D~R~SS~~la~ava~gL~s~Gi~V~d~Gl-~pTP~l~yav~~~~~~ad 179 (185)
.++|++|- |.+.-|. ..++.-|.+.|++|+|+|. +|...+--++ .+.+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~---~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~--~~~~~~ 141 (213)
T cd02069 88 KGKIVLATVKGDVHDIGK---NLVGVILSNNGYEVIDLGVMVPIEKILEAA--KEHKAD 141 (213)
T ss_pred CCeEEEEeCCCchhHHHH---HHHHHHHHhCCCEEEECCCCCCHHHHHHHH--HHcCCC
Confidence 46788874 5555554 4456668899999999986 6666655555 344443
No 64
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=44.46 E-value=1.3e+02 Score=26.00 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=57.1
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
+-+..+.+.++-+..-..|+.|++-.|..|+-..||.+.-.++.+...+.... +..|++|--. .+ .
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~-----------~~pvi~gv~~-~t--~ 81 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG-----------RVPVLAGAGY-GT--A 81 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCCEEEecCC-CH--H
Confidence 44566667765554556799999888877776789999888877766665431 2457777632 22 3
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
-+...++-..+.|++.+.+
T Consensus 82 ~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 82 TAIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 3344577788999997654
No 65
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=43.91 E-value=1.3e+02 Score=24.58 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc
Q 029919 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL 161 (185)
Q Consensus 94 dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl 161 (185)
+.+......|+.=+++.|.+.+ + ..+.++.+-+|+ ++.|..++.+.|...|+-|+....
T Consensus 27 ~~s~~~a~~iA~D~v~qL~~~y----p--PA~Tt~~l~q~~---~D~Fg~aL~~aLR~~GYaV~e~~~ 85 (151)
T PRK13883 27 QASAADQQKLATDAVQQLATLY----P--PAQTRFELQQPT---PDAFGQALVKALRDKGYALLEYNP 85 (151)
T ss_pred ccCHHHHHHHHHHHHHHHHHhC----C--CcceEEEEecCC---CcHHHHHHHHHHHHcCeEEEecCC
Confidence 5778888899999999988764 2 234678887766 589999999999999999987544
No 66
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=43.72 E-value=88 Score=23.96 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeE
Q 029919 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (185)
Q Consensus 95 LTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V 156 (185)
=|-+.++.+|..+|+-+.+. + ...|+.++-.....- -..++++++...|+++
T Consensus 68 ~n~~aa~~vG~lla~ra~~~-----g----i~~v~fdr~~~~y~g-rv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 68 KNVEAAYLVGELLAKRALEK-----G----IAKVVFDRGGYKYHG-RVKALADGAREGGLEF 119 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHT-----T----SSEEEECTSTSSSSS-HHHHHHHHHHHTTCB-
T ss_pred CCEehHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCcccH-HHHHHHHHHHHcCCCC
Confidence 35688999999999988875 2 256888876643333 3457799999999875
No 67
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=41.55 E-value=1.2e+02 Score=22.21 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEec-CCCChHHHHHHHHHHHHhCCC
Q 029919 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD-PRVSGPSLSVAVFAGLARAGC 154 (185)
Q Consensus 93 ~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD-~R~SS~~la~ava~gL~s~Gi 154 (185)
.++|++.+++++.+.++.+.+.. ...|.|.-+ .........++++.++....+
T Consensus 64 ~~~~~~~~r~a~~~~~~~l~~~~---------~~~v~i~l~~~~~~~~~~~~~~~~g~~l~~Y 117 (126)
T PF02789_consen 64 EKLTAESLRKAGAAAARALKKLK---------VKSVAIDLPIDGENSDEAAEAAAEGALLGSY 117 (126)
T ss_dssp TGBCHHHHHHHHHHHHHHHHHTT----------SEEEEEGCSSBTTCHHHHHHHHHHHHHHT-
T ss_pred CcCCHHHHHHHHHHHHHHHhhCC---------ceEEEEeCcccccCcHHHHHHHHHHHHHcCc
Confidence 46999999999999999998742 245777666 334445888888888776543
No 68
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.33 E-value=53 Score=25.60 Aligned_cols=44 Identities=18% Similarity=0.040 Sum_probs=26.1
Q ss_pred ecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhCCCCCCc
Q 029919 132 KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYD 179 (185)
Q Consensus 132 rD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav~~~~~~ad 179 (185)
-|..--+. +.++..|.+.|++|+++|.--+|.-.-... .+.+++
T Consensus 12 ~D~Hd~g~---~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-~e~~ad 55 (132)
T TIGR00640 12 QDGHDRGA---KVIATAYADLGFDVDVGPLFQTPEEIARQA-VEADVH 55 (132)
T ss_pred CCccHHHH---HHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HHcCCC
Confidence 45444443 345566788899999998766665443332 234444
No 69
>PRK05569 flavodoxin; Provisional
Probab=39.54 E-value=81 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.032 Sum_probs=25.1
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEe
Q 029919 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 127 ~VvVGrD~R~-SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
+|+|-|.+.. +.+.+++++++++.+.|++|...
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~ 36 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIK 36 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4777777764 66899999999998888766433
No 70
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=38.94 E-value=61 Score=28.23 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChhH
Q 029919 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTPA 166 (185)
Q Consensus 94 dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~-Gl~pTP~ 166 (185)
.=||..++.+++.+++...+. |. ....|.|- +. + -.+.++.+|.+.|++|..+ ...|.|-
T Consensus 159 KsTpfAAQ~aae~aakka~~~-----GI--k~V~V~vK---Gp-G--gREtALRaL~~~GLkIt~I~DvTpiPH 219 (233)
T PTZ00090 159 QQSERCAYRIGENIAKKCRRL-----GI--FAVDIKFR---RI-M--RVETVLQAFYANGLQVTQIIHEPRLPK 219 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEe---CC-C--hHHHHHHHHHHCCCEEEEEEECCCCCc
Confidence 568999999999999988764 31 11223331 12 2 2889999999999999987 7777774
No 71
>PRK05568 flavodoxin; Provisional
Probab=38.66 E-value=86 Score=23.55 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=25.2
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHhCCCeEEEecc
Q 029919 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGL 161 (185)
Q Consensus 127 ~VvVGrD~R-~SS~~la~ava~gL~s~Gi~V~d~Gl 161 (185)
+|+|-|++. -+.+.+++++++++...|++|..+.+
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 467777776 46788888888888888877654433
No 72
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=37.61 E-value=1.9e+02 Score=25.49 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=39.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhCCCCCCceeEEeC
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMGG 185 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl-~pTP~l~yav~~~~~~adgGIMI~ 185 (185)
..|+--||.-.+-.+- +++++-+.+.|-+++..|+ +|--....+- ....++.+|+||
T Consensus 135 l~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~VgmG~P~QE~wi~~--~~~~~~~~v~ig 192 (253)
T COG1922 135 LKIVGSHDGYFDPEEE-EAIVERIAASGPDILLVGMGVPRQEIWIAR--NRQQLPVAVAIG 192 (253)
T ss_pred ceEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEeCCCchhHHHHHH--hHHhcCCceEEe
Confidence 3454456666666555 8999999999999999987 5555554443 344567778775
No 73
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=36.72 E-value=2.7e+02 Score=23.86 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=54.1
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
+-+..+.+.++-...-..|+.|++.-|..|+...||.+.-.++.....+.... +..|++|--.- +-.
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-----------~~~vi~gv~~~--s~~ 80 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-----------RVPVIAGTGSN--ATE 80 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCCCc--cHH
Confidence 33455656654444445889999887777766689999888887777665431 23567764222 222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
-+-..++-..+.|++.+.+
T Consensus 81 ~~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLV 99 (285)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 2444456667888886654
No 74
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=36.47 E-value=43 Score=23.43 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=34.5
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHH
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACF 168 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~ 168 (185)
.+|+|+.|....+....+....-....|.+|..+-+.+.+...
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~ 45 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQY 45 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccc
Confidence 4799999999999999988888777789998887666555433
No 75
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.46 E-value=1.3e+02 Score=25.90 Aligned_cols=50 Identities=24% Similarity=0.072 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029919 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (185)
Q Consensus 103 Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~G 160 (185)
.+.++++|+.+.. + ..+|.+-++.-..+..+.+.+.+.|...|++|....
T Consensus 124 ~~~~~a~~~~~~~----~----~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~ 173 (347)
T cd06335 124 QAPFLVDEAVKRG----G----FKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVE 173 (347)
T ss_pred HHHHHHHHHHHhc----C----CCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEe
Confidence 4567888876542 1 257877777778899999999999999999987643
No 76
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=36.15 E-value=1.4e+02 Score=25.13 Aligned_cols=55 Identities=31% Similarity=0.373 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029919 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (185)
Q Consensus 95 LTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d 158 (185)
+.+.. ...+.++++|+.+.. + ..+|.|-+.....+..+.+.+.+.+.+.|.+|+.
T Consensus 114 ~~~~~-~~~~~~~~~~~~~~~----g----~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~ 168 (343)
T PF13458_consen 114 LSPSD-SQQAAALAEYLAKKL----G----AKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVG 168 (343)
T ss_dssp SS--H-HHHHHHHHHHHHHTT----T----TSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred Eeccc-cHHHHHHHHHHHHHc----C----CcEEEEEecCchhhhHHHHHHHHHHhhcCceecc
Confidence 44433 355778888876542 2 2456555555789999999999999999999853
No 77
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=35.75 E-value=32 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=23.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d 158 (185)
..|++..|+-..|+..+..+..-|...|++|..
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 469999999999999999999999999999865
No 78
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=34.94 E-value=2.1e+02 Score=23.22 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029919 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (185)
Q Consensus 93 ~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d 158 (185)
.++|......|+.=+.+.|.+.. + ....++.+-+|+ ..|..++.+.|..-|+.|+.
T Consensus 32 ~~~t~~aa~~iA~D~vsqLae~~----p--Pa~tt~~l~q~~----d~Fg~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 32 AELSGPAASAIAGDMVSRLAEQI----G--PGTTTIKLKKDT----SPFGQALEAALKGWGYAVVT 87 (145)
T ss_pred hhhcchHHHHHHHHHHHHHHHhc----C--CCceEEEEeecC----cHHHHHHHHHHHhcCeEEee
Confidence 46666677888888888777654 2 234689999998 28999999999999999985
No 79
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=34.92 E-value=2.1e+02 Score=24.47 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=53.0
Q ss_pred ccccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChH
Q 029919 60 NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (185)
Q Consensus 60 ~~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~ 139 (185)
|+=+..+...++-+..-..|++|++-.|..|+...||.+.-.++.....+.... +..|++|--.-.+
T Consensus 16 dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-----------~~~vi~gv~~~st-- 82 (289)
T PF00701_consen 16 DGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-----------RVPVIAGVGANST-- 82 (289)
T ss_dssp TSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-----------SSEEEEEEESSSH--
T ss_pred CcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-----------ceEEEecCcchhH--
Confidence 344566666665555556789999888877766689999988888777766432 2356666433222
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029919 140 SLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 140 ~la~ava~gL~s~Gi~V~d~ 159 (185)
.-+...++-..+.|++.+.+
T Consensus 83 ~~~i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 83 EEAIELARHAQDAGADAVLV 102 (289)
T ss_dssp HHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHhhcCceEEEE
Confidence 23333455567888886654
No 80
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=33.86 E-value=3e+02 Score=23.85 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=57.2
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
+=+..+.+.++-+..-..|+.|++--|..|+-..||.+.-.++.+...+.... +..|++|-- . +-.
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-----------~~pvi~gv~-~--~t~ 86 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-----------KVPVYTGVG-G--NTS 86 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEecC-c--cHH
Confidence 34566667766555556899999887877766689999888888777765431 245777753 2 233
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
-+...++-..+.|++.+.+
T Consensus 87 ~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 87 DAIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 3344566778889887654
No 81
>PRK06756 flavodoxin; Provisional
Probab=33.62 E-value=95 Score=23.72 Aligned_cols=31 Identities=3% Similarity=-0.117 Sum_probs=19.7
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHhCCCeEE
Q 029919 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVF 157 (185)
Q Consensus 127 ~VvVGrD~R-~SS~~la~ava~gL~s~Gi~V~ 157 (185)
+|+|-|+++ -+.+.++++++++|...|++|.
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~ 34 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAGVIRETENEIE 34 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHhhcCCeEE
Confidence 456666655 3556677777777776676654
No 82
>PRK09271 flavodoxin; Provisional
Probab=33.30 E-value=1e+02 Score=24.11 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=22.7
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeE
Q 029919 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLV 156 (185)
Q Consensus 127 ~VvVGrD~R~-SS~~la~ava~gL~s~Gi~V 156 (185)
+|+|-|.+.. +.+.+++.++++|...|++|
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCee
Confidence 4677777764 56888888888888888766
No 83
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=33.24 E-value=2.9e+02 Score=24.15 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=57.3
Q ss_pred ccccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChH
Q 029919 60 NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (185)
Q Consensus 60 ~~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~ 139 (185)
|+-+..+.+.++-+..-..|+.|++-.|..|+...||++.=.++.....+.... +..|++|-.. .+
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-----------~~pvi~gv~~-~t-- 87 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG-----------RVPVIAGAGG-GT-- 87 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEecCC-CH--
Confidence 344566667766555556789999888877776789999888887777765431 2356777642 22
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029919 140 SLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 140 ~la~ava~gL~s~Gi~V~d~ 159 (185)
.-+-..++-..+.|++.+.+
T Consensus 88 ~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 88 AQAIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 33444566678889887654
No 84
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=32.89 E-value=2.6e+02 Score=23.41 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC
Q 029919 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (185)
Q Consensus 102 ~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~ 162 (185)
..+.+++.|+.+.. + ..+|.+-++.-..+..+++.+.+.+...|++|......
T Consensus 120 ~~~~~~~~~~~~~~----~----~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~ 172 (334)
T cd06342 120 QQGPAAAKYAVETL----K----AKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGT 172 (334)
T ss_pred HHHHHHHHHHHHhc----C----CCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecC
Confidence 45667788776442 1 24566666767889999999999999999998875433
No 85
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=32.89 E-value=66 Score=23.86 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=30.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT 164 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pT 164 (185)
+|+|+.|....|+...+..+.-....|.+++.+-..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPP 38 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccC
Confidence 48999999999999888888877777888877655543
No 86
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=32.48 E-value=38 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=32.0
Q ss_pred EecCCCChHHHHHHHHHHHHh---CCCeEEEeccCChhHHHHhhhCCCCCCceeEEe
Q 029919 131 GKDPRVSGPSLSVAVFAGLAR---AGCLVFDMGLATTPACFMSTLLPPFAYDASIMG 184 (185)
Q Consensus 131 GrD~R~SS~~la~ava~gL~s---~Gi~V~d~Gl~pTP~l~yav~~~~~~adgGIMI 184 (185)
+.++|+++.++.+++...|.. .|..|+|+ .+=|-++.+-.+ ..||.-.+.|
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDL-FaGSGalGlEAL--SRGA~~v~fV 71 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDL-FAGSGALGLEAL--SRGAKSVVFV 71 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEET-T-TTSHHHHHHH--HTT-SEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEc-CCccCccHHHHH--hcCCCeEEEE
Confidence 679999999999999999995 59999997 233444554432 2355554444
No 87
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.08 E-value=3.1e+02 Score=23.69 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=52.8
Q ss_pred cccchhhHHHhhhcccc-cceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChH
Q 029919 61 EVVVDEEMDRIRRLQNG-SDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~g-sGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~ 139 (185)
+=+..+.+..+-+..-. .|+.|++-.|..|+...||.+.-.++.+...+.... +..|++|--. .+-
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-----------~~~viagvg~--~~t 85 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-----------KVKLIAQVGS--VNT 85 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-----------CCCEEecCCC--CCH
Confidence 34566667665555555 899999888877766689999888877766665431 1335555422 122
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029919 140 SLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 140 ~la~ava~gL~s~Gi~V~d~ 159 (185)
.-+...++-..+.|++.+.+
T Consensus 86 ~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 86 AEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 22333445556777775543
No 88
>PLN02739 serine acetyltransferase
Probab=30.57 E-value=46 Score=30.72 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCC
Q 029919 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135 (185)
Q Consensus 94 dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R 135 (185)
|+|++...+|+.+|+..+.++ ++|.+|.|..
T Consensus 323 DaT~e~~~~Ia~ay~~lf~~g-----------~sI~~g~~~~ 353 (355)
T PLN02739 323 DATREFFQNVAVAYRETIPNG-----------SSVSGSCREK 353 (355)
T ss_pred hhhHHHHHHHHHHHHhhccCC-----------CeEEeecccc
Confidence 799999999999999988643 6899999864
No 89
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=30.35 E-value=83 Score=26.33 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=30.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHh
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMS 170 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~ya 170 (185)
+|.||.-.-..+..+++.+...|...|+.|...+.-.++.++-+
T Consensus 2 ~I~ig~~~w~~~~~~a~i~~~~Le~~G~~v~~~~~~~~~~~~~a 45 (257)
T PF04069_consen 2 PIVIGSKNWTESQILAEIYAQLLEAAGYVVEVVNLGSTPVIFAA 45 (257)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEESSHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHCCCeEEEecCCchHHHHHH
Confidence 47777777777777777777788888886666666665555444
No 90
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=29.60 E-value=3e+02 Score=25.40 Aligned_cols=72 Identities=22% Similarity=0.205 Sum_probs=49.1
Q ss_pred cchhhHHHhhhccccccee-eeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHH
Q 029919 63 VVDEEMDRIRRLQNGSDVR-GVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (185)
Q Consensus 63 ~~~~~~~~~~~LF~gsGIR-Gi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~l 141 (185)
+.|..||.+.-. ..|++ .+..-| ..||++.+..+ .+. . .+|++..|.-..|...
T Consensus 262 ivEG~~Daisl~--~~G~~~aVA~~G-----talt~~~~~~l--------~r~-----~-----~~vvl~~D~D~aG~~a 316 (415)
T TIGR01391 262 LVEGYMDVIALH--QAGIKNAVASLG-----TALTEEHIKLL--------KRY-----A-----DEIILCFDGDKAGRKA 316 (415)
T ss_pred EEecHHHHHHHH--HCCCCcEEECCC-----CCCcHHHHHHH--------Hhh-----C-----CeEEEEeCCCHHHHHH
Confidence 344456655322 34666 454333 36887776553 221 1 3699999999999999
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029919 142 SVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 142 a~ava~gL~s~Gi~V~d~ 159 (185)
+.-+++.|...|++|..+
T Consensus 317 a~r~~~~l~~~g~~v~v~ 334 (415)
T TIGR01391 317 ALRAIELLLPLGINVKVI 334 (415)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 999999999999887654
No 91
>PF13362 Toprim_3: Toprim domain
Probab=29.38 E-value=1.8e+02 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=31.7
Q ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHhCCCeEEEecc
Q 029919 126 VKVSLGKDPRVS--GPSLSVAVFAGLARAGCLVFDMGL 161 (185)
Q Consensus 126 ~~VvVGrD~R~S--S~~la~ava~gL~s~Gi~V~d~Gl 161 (185)
.+|+|.-|.-.. +...+..+++.|.+.|+.+..+-+
T Consensus 42 ~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 42 RRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 579999999888 999999999999999999877643
No 92
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=29.29 E-value=98 Score=23.55 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=19.2
Q ss_pred EEEEecCCC-ChHHHHHHHHHHHHhCCCeE
Q 029919 128 VSLGKDPRV-SGPSLSVAVFAGLARAGCLV 156 (185)
Q Consensus 128 VvVGrD~R~-SS~~la~ava~gL~s~Gi~V 156 (185)
++|-|.++. +.+.+++.+++.|...|++|
T Consensus 3 i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 3 ILLAYLSLSGNTEEVAFMIQDYLQKDGHEV 32 (140)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhhCCeeE
Confidence 566666664 55777777777777667665
No 93
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=27.33 E-value=1.5e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.024 Sum_probs=26.3
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHh-CCCeEEEe
Q 029919 127 KVSLGKDPR-VSGPSLSVAVFAGLAR-AGCLVFDM 159 (185)
Q Consensus 127 ~VvVGrD~R-~SS~~la~ava~gL~s-~Gi~V~d~ 159 (185)
+|+|-|.+. -+.+.+++++++++.+ .|++|..+
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~ 37 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIK 37 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 477777664 5589999999999998 89888544
No 94
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=27.31 E-value=3.8e+02 Score=22.62 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=52.6
Q ss_pred ccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHH
Q 029919 62 VVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (185)
Q Consensus 62 ~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~l 141 (185)
-+..+.+..+-+..-..|+.|++--|..|+...||.+.-.++.+...+.... +..|++|- ...+-+ =
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-----------~~~vi~gv-~~~~~~-~ 80 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-----------RVPVIAGV-GANSTR-E 80 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEec-CCccHH-H
Confidence 3455555554444445699999888877776789999888887777776431 13455553 222222 2
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029919 142 SVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 142 a~ava~gL~s~Gi~V~d~ 159 (185)
+...++-..+.|++.+.+
T Consensus 81 ~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 81 AIELARHAEEAGADGVLV 98 (281)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 344456667788886654
No 95
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=27.03 E-value=2.1e+02 Score=22.68 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029919 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (185)
Q Consensus 99 ~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d 158 (185)
.+..++..|.+.+.+.. . ..+-+++|| ..|-.++-.+++-|...|.+|-.
T Consensus 47 si~~la~~y~~~I~~~~----~---~gp~~L~G~---S~Gg~lA~E~A~~Le~~G~~v~~ 96 (229)
T PF00975_consen 47 SIEELASRYAEAIRARQ----P---EGPYVLAGW---SFGGILAFEMARQLEEAGEEVSR 96 (229)
T ss_dssp SHHHHHHHHHHHHHHHT----S---SSSEEEEEE---THHHHHHHHHHHHHHHTT-SESE
T ss_pred CHHHHHHHHHHHhhhhC----C---CCCeeehcc---CccHHHHHHHHHHHHHhhhccCc
Confidence 56778888888887652 1 236789998 58999999999999999997744
No 96
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=27.02 E-value=2.3e+02 Score=24.96 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 104 AESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 104 g~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
+.++++|+.++. + ..+|.+-++....++.+.+.+.+.+...|.+|...
T Consensus 148 ~~~~~~~~~~~~----~----~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~ 195 (369)
T PRK15404 148 GPTAAKYILEKV----K----PKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFF 195 (369)
T ss_pred HHHHHHHHHHhc----C----CCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEE
Confidence 457788876542 1 25677777777889999999999999999998754
No 97
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=26.78 E-value=2.1e+02 Score=23.51 Aligned_cols=50 Identities=22% Similarity=0.068 Sum_probs=31.4
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhCCCCCCc
Q 029919 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYD 179 (185)
Q Consensus 125 ~~~VvVGr---D~R~SS~~la~ava~gL~s~Gi~V~d~Gl-~pTP~l~yav~~~~~~ad 179 (185)
.++|+++- |.+.-|. ..+...|.+.|++|+++|. +|...+--++ ++.+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~---~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~--~~~~pd 137 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGK---NIVVTMLRANGFDVIDLGRDVPIDTVVEKV--KKEKPL 137 (197)
T ss_pred CCeEEEEeCCCchhHHHH---HHHHHHHHhCCcEEEECCCCCCHHHHHHHH--HHcCCC
Confidence 35777764 5555454 4456678899999999986 4545554444 344443
No 98
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=26.61 E-value=93 Score=27.38 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=33.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhH
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPA 166 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~ 166 (185)
.-|++|.|.+.+++.+...+.+.....|.+++.++...|+.
T Consensus 151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 34678999999998888887777666799999998888776
No 99
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=26.46 E-value=2.5e+02 Score=24.24 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029919 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (185)
Q Consensus 103 Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~G 160 (185)
.+.++++|+.+. + ..+|.|-++.-..+..+.+.+.+.+...|.+|....
T Consensus 111 ~~~~~~~~~~~~-----g----~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~ 159 (336)
T cd06339 111 EARRAAEYARSQ-----G----KRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIE 159 (336)
T ss_pred HHHHHHHHHHhc-----C----ccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeE
Confidence 356778887654 2 246777777778899999999999999999987653
No 100
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=26.44 E-value=2.8e+02 Score=21.92 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeE
Q 029919 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (185)
Q Consensus 96 Tp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V 156 (185)
|-+.++.+|..+|+-..+. | -..|++++-.-...-.+ .+++++...+|+++
T Consensus 75 N~~aA~~vG~lia~ra~~k-----g----i~~vVfdr~g~~yhgRV-~Ala~~AreaGL~f 125 (125)
T COG0256 75 NTEAAYLVGKLIAERALAK-----G----IEEVVFDRGGYKYHGRV-AALADGAREAGLEF 125 (125)
T ss_pred CHHHHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCCcchHH-HHHHHHHHHcCcCC
Confidence 5689999999999987765 3 24688887665555544 46689999999863
No 101
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=25.87 E-value=2.1e+02 Score=23.42 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCeEEEE---ecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhh
Q 029919 125 DVKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMST 171 (185)
Q Consensus 125 ~~~VvVG---rD~R~SS~~la~ava~gL~s~Gi~V~d~Gl-~pTP~l~yav 171 (185)
.++|+++ -|.+.-|..+ ++..|...|++|+++|. +|...+--++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~---v~~~l~~~G~~vi~lG~~~p~~~l~~~~ 129 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNL---VATMLEANGFEVIDLGRDVPPEEFVEAV 129 (201)
T ss_pred CCeEEEEecCCccchHHHHH---HHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 3577776 3666555544 46678899999999985 4555555554
No 102
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=25.87 E-value=2.3e+02 Score=23.09 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEE----EecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029919 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSL----GKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (185)
Q Consensus 94 dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvV----GrD~R~SS~~la~ava~gL~s~Gi~V~d~-Gl~pTP 165 (185)
.=||..+...++.+++...+. |. ....|.| |.-++-.|+ =.++++.+|...|++|..+ +..|.|
T Consensus 68 KsTpyAAq~aa~~~a~k~~~~-----Gi--~~v~V~vr~~gg~~~kg~Gp-Gr~~airaL~~~glkI~~I~DvTPiP 136 (149)
T PTZ00129 68 ESSPYAAMMAAQDVAARCKEL-----GI--NALHIKLRATGGVRTKTPGP-GAQAALRALARAGLKIGRIEDVTPIP 136 (149)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEEecCCCCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCCC
Confidence 678889999999999987764 31 1234555 112222222 2456789999999999988 777776
No 103
>PRK04017 hypothetical protein; Provisional
Probab=25.64 E-value=1.4e+02 Score=23.75 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=29.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEE
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~ 157 (185)
..|+|--|+-..|+.++.-+.+-|...|+.|-
T Consensus 66 r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 66 KEVIILTDFDRKGEELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999999999874
No 104
>PRK09273 hypothetical protein; Provisional
Probab=25.38 E-value=2.1e+02 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEecc
Q 029919 138 GPSLSVAVFAGLARAGCLVFDMGL 161 (185)
Q Consensus 138 S~~la~ava~gL~s~Gi~V~d~Gl 161 (185)
.+.+.+.+.+.|...|++|+|+|.
T Consensus 15 n~~i~~~L~~~L~~~G~eV~D~G~ 38 (211)
T PRK09273 15 NAIIYEALKKVADPKGHEVFNYGM 38 (211)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCC
Confidence 345677777777777777777775
No 105
>PRK06703 flavodoxin; Provisional
Probab=25.27 E-value=1.6e+02 Score=22.54 Aligned_cols=30 Identities=7% Similarity=-0.025 Sum_probs=17.2
Q ss_pred EEEEecCC-CChHHHHHHHHHHHHhCCCeEE
Q 029919 128 VSLGKDPR-VSGPSLSVAVFAGLARAGCLVF 157 (185)
Q Consensus 128 VvVGrD~R-~SS~~la~ava~gL~s~Gi~V~ 157 (185)
|+|-|.+. -+++.+++.+++.|...|++|.
T Consensus 4 v~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~ 34 (151)
T PRK06703 4 ILIAYASMSGNTEDIADLIKVSLDAFDHEVV 34 (151)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCceE
Confidence 44555544 3556666666666666665543
No 106
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.95 E-value=3.6e+02 Score=23.55 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029919 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (185)
Q Consensus 101 ~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~p 163 (185)
...+.++++|+.+.... + ....+|.|-++.-..+..+.+.+.+.+...|.+|......|
T Consensus 120 ~~~~~~l~~~~~~~~~~--~--~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~ 178 (351)
T cd06334 120 SDQARALVQYIAEQEGG--K--LKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPP 178 (351)
T ss_pred HHHHHHHHHHHHHhccc--C--CCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCC
Confidence 34566788887654200 0 01357877777888999999999999999999987654333
No 107
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=24.62 E-value=1.4e+02 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHHHHhCCCeE
Q 029919 136 VSGPSLSVAVFAGLARAGCLV 156 (185)
Q Consensus 136 ~SS~~la~ava~gL~s~Gi~V 156 (185)
-+++.++++++++|...|++|
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v 30 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEV 30 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeE
Confidence 345666666666666666554
No 108
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.62 E-value=3.5e+02 Score=22.77 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 103 Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
.+.++++++.+. + .++|.|-++.-..+..+.+++.+.+...|.+|..-
T Consensus 124 ~~~~l~~~~~~~-----~----~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 171 (312)
T cd06346 124 QGQALAQLAAER-----G----YKSVATTYINNDYGVGLADAFTKAFEALGGTVTNV 171 (312)
T ss_pred HHHHHHHHHHHc-----C----CCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEE
Confidence 456777777654 2 24677766777789999999999999999998753
No 109
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.27 E-value=3.7e+02 Score=21.40 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=32.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-ChhHHH
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TTPACF 168 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~-pTP~l~ 168 (185)
-.++|+..-...+.-.+.+++-+...|-+++.+|+- |.-...
T Consensus 75 l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 117 (172)
T PF03808_consen 75 LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERW 117 (172)
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 356776666668888899999999999999999874 444433
No 110
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.14 E-value=4.6e+02 Score=22.51 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=53.0
Q ss_pred ccchhhHHHhhhccccc-ceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 62 VVVDEEMDRIRRLQNGS-DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 62 ~~~~~~~~~~~~LF~gs-GIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
-+..+.+.++-+..-.. |+.|++-.|..|+...||.+.-.++.+...+.... +..|++|--.- +-.
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-----------~~~viagv~~~--~~~ 83 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-----------KVTLIAHVGSL--NLK 83 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCeEEeccCCC--CHH
Confidence 35566666654545457 99999888877766689998888877776665431 23466654321 122
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
-+...++-..+.|++.+.+
T Consensus 84 ~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 84 ESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 2334455567888886653
No 111
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=24.01 E-value=3.1e+02 Score=23.44 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029919 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (185)
Q Consensus 103 Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~p 163 (185)
.+.++++|+.+.. + .+|.+=+.....+...++.+.+.+...|.+|......|
T Consensus 119 ~~~~~~~~~~~~~----~-----~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~ 170 (334)
T cd06356 119 QFSTLVPYMMEKY----G-----KKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIP 170 (334)
T ss_pred HHHHHHHHHHHcc----C-----CeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecC
Confidence 3567788877542 1 35655566667889999999999999999987643333
No 112
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=24.01 E-value=2.8e+02 Score=21.69 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc
Q 029919 100 VEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL 161 (185)
Q Consensus 100 v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl 161 (185)
...|+.=+.+.|.+.+ + ..+.++.+- ......|..++.+.|...|+-|.....
T Consensus 5 ~~~iA~D~v~qL~~~y----p--PA~Tt~~L~---q~~~d~Fg~aL~~~LR~~GYaV~e~~~ 57 (121)
T PF07283_consen 5 AQAIAGDMVSQLAEQY----P--PAKTTFELK---QKDPDPFGQALENALRAKGYAVIEDDP 57 (121)
T ss_pred HHHHHHHHHHHHHHhc----C--CCccEEEEE---cCCCChHHHHHHHHHHhcCcEEEecCC
Confidence 3456666666666554 2 224567774 246668999999999999999988743
No 113
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.98 E-value=3.5e+02 Score=22.04 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=29.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHH
Q 029919 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACF 168 (185)
Q Consensus 128 VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl-~pTP~l~ 168 (185)
.++|++.-. ++.-.+++++-+.+.|-+++.+|+ +|--...
T Consensus 76 ~i~g~~g~f-~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 76 KIVGAFGPL-EPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred EEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 357885555 556667889999999999999987 4554543
No 114
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.97 E-value=4.4e+02 Score=22.87 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=52.2
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
+=+..+.+.++-+..-..|+.|++-.|..|+...||.+.-.++.+...+.... +..|++|-=.-.+.+.
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g-----------~~pvi~gv~~~~t~~a 84 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG-----------RIPFAPGTGALNHDET 84 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-----------CCcEEEECCcchHHHH
Confidence 44566666665555556899999888877776789999888777766664321 2345555333222222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
-..++-..+.|++.+.+
T Consensus 85 --i~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 85 --LELTKFAEEAGADAAMV 101 (294)
T ss_pred --HHHHHHHHHcCCCEEEE
Confidence 22334457778876654
No 115
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=23.90 E-value=2e+02 Score=22.73 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecC--CCChHHHHHHHHHHHHhCCCeEEEe--ccCChhHHHH
Q 029919 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDP--RVSGPSLSVAVFAGLARAGCLVFDM--GLATTPACFM 169 (185)
Q Consensus 102 ~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~--R~SS~~la~ava~gL~s~Gi~V~d~--Gl~pTP~l~y 169 (185)
.|+..+++||.+.. ...-|++||.. +.... ...+-|.+.|++|... .+.-.-.+.-
T Consensus 11 glg~~la~~La~~~--------~~~~il~~r~~~~~~~~~----~~i~~l~~~g~~v~~~~~Dv~d~~~v~~ 70 (181)
T PF08659_consen 11 GLGQSLARWLAERG--------ARRLILLGRSGAPSAEAE----AAIRELESAGARVEYVQCDVTDPEAVAA 70 (181)
T ss_dssp HHHHHHHHHHHHTT---------SEEEEEESSGGGSTTHH----HHHHHHHHTT-EEEEEE--TTSHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCEEEEeccCCCccHHHH----HHHHHHHhCCCceeeeccCccCHHHHHH
Confidence 48889999998763 12457888883 22222 3577788899998775 4443334433
No 116
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=23.01 E-value=1.8e+02 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.032 Sum_probs=26.0
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHhC-CCeEEEe
Q 029919 127 KVSLGKDPR-VSGPSLSVAVFAGLARA-GCLVFDM 159 (185)
Q Consensus 127 ~VvVGrD~R-~SS~~la~ava~gL~s~-Gi~V~d~ 159 (185)
+|+|-|.++ -+.+.+++++++++.+. |++|...
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~ 36 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVK 36 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 477777775 56789999999999886 9887544
No 117
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=22.65 E-value=3.8e+02 Score=23.19 Aligned_cols=50 Identities=10% Similarity=-0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEe
Q 029919 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 101 ~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~-SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
...+.++++++.+. + ..+++|.+|.-. .+..+.+.+.+.+...|++|...
T Consensus 122 ~~~~~a~~~~l~~~-----~----~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~ 172 (389)
T cd06352 122 RKLGEAVLALLRWF-----N----WHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHV 172 (389)
T ss_pred HHHHHHHHHHHHHc-----C----ceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEE
Confidence 45677888887643 2 246777666555 78899999999999999998754
No 118
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.65 E-value=1.2e+02 Score=22.22 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=10.6
Q ss_pred HHHHHHhCCCeEEEeccC
Q 029919 145 VFAGLARAGCLVFDMGLA 162 (185)
Q Consensus 145 va~gL~s~Gi~V~d~Gl~ 162 (185)
++..|...|++|+++|..
T Consensus 19 ~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 19 VARALRDAGFEVIDLGVD 36 (119)
T ss_pred HHHHHHHCCCEEEECCCC
Confidence 344556667777666543
No 119
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.49 E-value=3.5e+02 Score=22.94 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 103 Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
.+.++++|+.+.. + ..+|.|-++....+..+...+.+.|.+.|.+|...
T Consensus 121 ~~~~~~~~~~~~~----~----~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~ 169 (340)
T cd06349 121 EAPLLADYAVKDL----G----FKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAH 169 (340)
T ss_pred HHHHHHHHHHHHc----C----CcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEE
Confidence 3457788875442 2 24676666667889999999999999999998753
No 120
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.83 E-value=3.8e+02 Score=24.62 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=71.0
Q ss_pred ccCCCCCCCCCCCcccccccccccccceeeeeeecccccccccc---chhhHHHhhhcccc---cceeeeeccCCCCCCC
Q 029919 20 FLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVV---VDEEMDRIRRLQNG---SDVRGVALEGEKGRTV 93 (185)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~LF~g---sGIRGi~~eG~~g~~~ 93 (185)
+-++-+.-++++|+.+.-...+||+.++-...... +++++ +++-....+.-... .-..+++.|
T Consensus 15 LWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~----~~~~~vVtne~~~f~v~eql~e~~~~~~~~illE------- 83 (333)
T COG0836 15 LWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGD----IEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILE------- 83 (333)
T ss_pred cCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCC----ccCeEEEeCHHHHHHHHHHHhhhhhccccceEec-------
Confidence 33344556677888886677888887765443222 33433 33322222222222 112335554
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCCh-HHHHHHHHHH--HHhCCCeEEEeccCCh-hHHHH
Q 029919 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSG-PSLSVAVFAG--LARAGCLVFDMGLATT-PACFM 169 (185)
Q Consensus 94 dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS-~~la~ava~g--L~s~Gi~V~d~Gl~pT-P~l~y 169 (185)
.....++-+|+.|--....+. + +..-+++--|....- +.|.+++..+ ++..| ..+-+|+.|| |..-|
T Consensus 84 P~gRnTApAIA~aa~~~~~~~-----~---d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g-~lVTfGI~Pt~PeTGY 154 (333)
T COG0836 84 PEGRNTAPAIALAALSATAEG-----G---DALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG-GIVTFGIPPTRPETGY 154 (333)
T ss_pred cCCCCcHHHHHHHHHHHHHhC-----C---CcEEEEecCcceeccHHHHHHHHHHHHHHHHcC-CEEEEecCCCCCccCc
Confidence 233345555555444433322 1 223456788888554 4788888776 66778 6677898887 55555
Q ss_pred h
Q 029919 170 S 170 (185)
Q Consensus 170 a 170 (185)
.
T Consensus 155 G 155 (333)
T COG0836 155 G 155 (333)
T ss_pred c
Confidence 4
No 121
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=21.78 E-value=2.9e+02 Score=24.35 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEE
Q 029919 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (185)
Q Consensus 102 ~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~ 157 (185)
..+.++++|+.+.. + .++|+|=+|.-..++.+.+++-+.|.+.|.++.
T Consensus 133 ~q~~~~~~~l~~~~----~----~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~ 180 (366)
T COG0683 133 QQAAAAADYLVKKG----G----KKRVAIIGDDYAYGEGLADAFKAALKALGGEVV 180 (366)
T ss_pred HHHHHHHHHHHHhc----C----CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEE
Confidence 35677888887663 2 247888899999999999999999999999743
No 122
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=21.71 E-value=1.1e+02 Score=22.92 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHhCCCeEEEe
Q 029919 136 VSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 136 ~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
-+++++++.++++|.+.|++|..+
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~ 31 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVV 31 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCceeee
Confidence 367899999999999999865444
No 123
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=21.50 E-value=2.9e+02 Score=23.45 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 101 ~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
...+.++++|+.++. ..+|++-++....++.+.+.+-+.+...|.+|..-
T Consensus 120 ~~~~~~~~~~~~~~~---------~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 169 (334)
T cd06327 120 YMLANGTAPALVKAG---------GKKWFFLTADYAFGHSLERDARKVVKANGGKVVGS 169 (334)
T ss_pred HHHHHHHHHHHHHhc---------CCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCc
Confidence 456677888776542 24676767778889999999999999999998654
No 124
>PLN02417 dihydrodipicolinate synthase
Probab=21.38 E-value=5.3e+02 Score=22.17 Aligned_cols=86 Identities=10% Similarity=-0.011 Sum_probs=51.6
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
+-+..+.+.++-+..-..|+.|++-.|..|+...||.+.-.++.+...+.... +..|++|--.-.+-+.
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~-----------~~pvi~gv~~~~t~~~ 85 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG-----------KIKVIGNTGSNSTREA 85 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEECCCccHHHH
Confidence 34555656655444445789999888877776789999888877666554321 2346555433222222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
...++-..+.|++.+.+
T Consensus 86 --i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 86 --IHATEQGFAVGMHAALH 102 (280)
T ss_pred --HHHHHHHHHcCCCEEEE
Confidence 33344557778775543
No 125
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=21.37 E-value=3.9e+02 Score=23.69 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 101 ~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
...+.++++|+.+. + .++|.+-++...-+..+.+.+.+.+...|.+|+.-
T Consensus 113 ~~~~~ala~~~~~~-----g----~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 162 (347)
T TIGR03863 113 AMLADALAQYLAAK-----R----WRRILLIQGPLPADALYADAFRRSAKRFGAKIVAE 162 (347)
T ss_pred HhHHHHHHHHHHHc-----C----CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEe
Confidence 34667888888754 2 25788878888899999999999999999998753
No 126
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.29 E-value=1.2e+02 Score=28.73 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhh
Q 029919 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (185)
Q Consensus 93 ~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~pTP~l~yav 171 (185)
+-+|||+.+. |.|+-.++. ..+||||-+.+.+.+.+.+.....+. ..+.++..+....=++-|+.
T Consensus 145 v~~NPEFLRE-G~Av~D~~~------------PdRIViG~~~~~a~~~~~ely~~~~~-~~~p~l~t~~~~AE~IKyaa 209 (414)
T COG1004 145 VASNPEFLRE-GSAVYDFLY------------PDRIVIGVRSERAAAVLRELYAPFLR-QDVPILFTDLREAELIKYAA 209 (414)
T ss_pred EecChHHhcC-cchhhhccC------------CCeEEEccCChhHHHHHHHHHhhhhh-cCCCEEEecchHHHHHHHHH
Confidence 3467776553 555555443 25799999888888888877777777 88999988988888877765
No 127
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.11 E-value=2.3e+02 Score=23.58 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=27.6
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 126 ~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
..|++-||.+.........++..|.+.|+++.-+
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSL 220 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEh
Confidence 4699999987666667777899999999997654
No 128
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=20.96 E-value=4.3e+02 Score=20.97 Aligned_cols=53 Identities=17% Similarity=0.021 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029919 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (185)
Q Consensus 102 ~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~Gl~p 163 (185)
..+.++++++... + -.+|++-+|....+..+.+.+.+.+...|+.|......+
T Consensus 126 ~~~~a~~~~l~~~-----~----w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (298)
T cd06269 126 SQAQAIVDLLKHF-----G----WTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIP 178 (298)
T ss_pred HHHHHHHHHHHHC-----C----CeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcC
Confidence 6778888888654 2 257888888888999999999999999898887764433
No 129
>CHL00041 rps11 ribosomal protein S11
Probab=20.86 E-value=3.9e+02 Score=20.43 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029919 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (185)
Q Consensus 94 dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~-Gl~pTP 165 (185)
.-|+..+..+++.+++.+.+. |. ....|.| +-. | .-.+++..+|...|+.|..+ +..|.|
T Consensus 52 K~T~~Aa~~~a~~~~~~~~~~-----gi--~~v~I~i-kG~---G-~Gr~~~ir~l~~~glkI~~I~D~Tpip 112 (116)
T CHL00041 52 KGTPFAAQTAAENAIRTVIDQ-----GM--KRAEVMI-KGP---G-LGRDTALRAIRRSGLKLSSIRDVTPMP 112 (116)
T ss_pred cCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEE-ECC---C-CcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 678999999999999988765 31 1223444 222 2 23467789999999999887 666665
No 130
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=20.82 E-value=3.8e+02 Score=22.59 Aligned_cols=49 Identities=16% Similarity=-0.032 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029919 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 102 ~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~ 159 (185)
..+.++++++++. + -.+|.+-++...-+..+.+.+.+.+...|++|...
T Consensus 146 ~~~~a~~~~~~~~-----~----~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~ 194 (348)
T cd06350 146 SQALAIVALLKHF-----G----WTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFV 194 (348)
T ss_pred HHHHHHHHHHHHC-----C----CeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEE
Confidence 4677888877643 2 24677766666678999999999999999998764
No 131
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.81 E-value=2.6e+02 Score=20.85 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=34.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe--c-------------cCChhHHHHhh
Q 029919 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM--G-------------LATTPACFMST 171 (185)
Q Consensus 127 ~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d~--G-------------l~pTP~l~yav 171 (185)
+|+|..-.-.||-.+++-+-+.+...|+++... . ++.+|+++|..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~ 61 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYY 61 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHH
Confidence 466766777999999999999999999986421 1 56778887753
No 132
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.58 E-value=5.3e+02 Score=21.87 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=53.1
Q ss_pred cccchhhHHHhhhcccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHH
Q 029919 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (185)
Q Consensus 61 ~~~~~~~~~~~~~LF~gsGIRGi~~eG~~g~~~dLTp~~v~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~ 140 (185)
+=+..+.+..+-+..-..|+.|++..|..|+...||.+.-.++.+...+.... +..|++|-=. .+-.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-----------~~~vi~gv~~--~~~~ 82 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-----------RVPVIAGTGS--NNTA 82 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-----------CCcEEeccCC--ccHH
Confidence 34566666655444446889999877777766689999988887777765431 1234444221 1223
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029919 141 LSVAVFAGLARAGCLVFDM 159 (185)
Q Consensus 141 la~ava~gL~s~Gi~V~d~ 159 (185)
-+...++-..+.|++.+.+
T Consensus 83 ~~~~~a~~a~~~G~d~v~~ 101 (284)
T cd00950 83 EAIELTKRAEKAGADAALV 101 (284)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3344556667788885544
No 133
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=20.48 E-value=4.7e+02 Score=21.88 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029919 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (185)
Q Consensus 101 ~~Ig~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~SS~~la~ava~gL~s~Gi~V~d 158 (185)
...+.++++|+.+. + ..+|.+-++....+....+++.+.+...|.++..
T Consensus 121 ~~~~~~~~~~l~~~-----g----~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 169 (336)
T cd06326 121 ADEIAAIVRHLVTL-----G----LKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVA 169 (336)
T ss_pred HHHHHHHHHHHHHh-----C----CceEEEEEecCcchHHHHHHHHHHHHHcCCCeEE
Confidence 34567788888764 2 2355444555567888999999999999988654
Done!