BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029920
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 227 bits (578), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/185 (58%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
Query: 1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
MGLL+ LM+GLDN+GKTTI+ K NGED ISPTLGFNIKT+ ++ +
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
LI ANKQD+ GAL+ I +VL L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 LIFANKQDLPGALSSNAIREVLELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
Query: 181 IYLLD 185
I+ D
Sbjct: 180 IFTAD 184
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 226 bits (577), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/185 (57%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
Query: 1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
MGLL+ LM+GLDN+GKTTI+ K NGED ISPTLGFNIKT+ ++ +
Sbjct: 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
LI ANKQD+ GAL+ I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 123 LIFANKQDLPGALSXNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
Query: 181 IYLLD 185
++ D
Sbjct: 182 VFTAD 186
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 226 bits (577), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 107/185 (57%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
Query: 1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
MGLL+ LM+GLDN+GKTTI+ K NGED ISPTLGFNIKT+ ++ +
Sbjct: 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
LI ANKQD+ GAL+ I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 123 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
Query: 181 IYLLD 185
++ D
Sbjct: 182 VFTAD 186
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 102/166 (61%), Positives = 133/166 (80%), Gaps = 1/166 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLDN+GKTTI+ K NGED ISPTLGFNIKT+ ++ + LNIWDVGG +++RSYWRN
Sbjct: 5 LMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRN 64
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+LLI ANKQD+ GAL+ I
Sbjct: 65 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQ 124
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD 185
+ L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR++ D
Sbjct: 125 EALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 169
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 128/161 (79%), Gaps = 1/161 (0%)
Query: 25 DNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT 84
DN+GKTTI+ K NGED ISPTLGFNIKT+ ++ + LNIWDVGGQ+++RSYWRNYFE T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL 144
DGL+WVVDS+D +R DC+ EL +LL EERL+GA+LLI ANKQD+ GAL+ I + L L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD 185
+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR++ D
Sbjct: 147 DSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 118/161 (73%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLDN+GKTT++ ++ ED S I+PT GFNIK+V Q + LN+WD+GGQR IR YWR+
Sbjct: 21 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YFE TD L++V+DS+D +R ++ EL LL+EE+LS +LI ANKQD+ A +EIA
Sbjct: 81 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
+ LNL + + R W+I CSA TGEG+ +G +W+ +++ ++
Sbjct: 141 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 118/161 (73%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLDN+GKTT++ ++ ED S I+PT GFNIK+V Q + LN+WD+GGQR IR YWR+
Sbjct: 20 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 79
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YFE TD L++V+DS+D +R ++ EL LL+EE+LS +LI ANKQD+ A +EIA
Sbjct: 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
+ LNL + + R W+I CSA TGEG+ +G +W+ +++ ++
Sbjct: 140 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 20 LMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
LMVGLD +GKTTI+ K+ GE + I PT+GFN++TV Y+ + +WDVGGQ IR WR
Sbjct: 24 LMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 82
Query: 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
+YF+ T GL++VVDS+D R+ + + EL +L E+ L A LL+ ANKQD+ A+ EI
Sbjct: 83 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 142
Query: 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
L L ++ + RHW I A +GEGL EG DWL +IAS+
Sbjct: 143 TDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLD +GKTTI+ ++ + PT+GFN++T++Y+ LN+WD+GGQ +IR YWR
Sbjct: 22 LILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 81
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T +++VVDS+D R+ EL +L+EE L A+LL+ ANKQD GAL+ +E++
Sbjct: 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVS 141
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
K LNL + K R W IV SA GEG+ EG DWL+
Sbjct: 142 KELNLVEL-KDRSWSIVASSAIKGEGITEGLDWLI 175
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLDN+GKTT++ ++ ED S I+PT GFNIK+V Q + LN+WD+GGQR IR YWR+
Sbjct: 8 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 67
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YFE TD L++V+DS+D +R ++ EL LL+EE+LS +LI ANKQD+ A +EIA
Sbjct: 68 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 127
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
+ LNL + + R W+I CSA TGEG+ +G +W+ +++
Sbjct: 128 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLD +GKTTI+ ++ + PT+GFN++TVTY+ +WD+GGQ +IR YWR
Sbjct: 6 LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 65
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ TD +++VVDS D R+ K EL +L+EE L A L++ ANKQD+ A+TP+E+A
Sbjct: 66 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMA 125
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
L L A+ K R W+I SA G GL E +WLV+ + SR
Sbjct: 126 NALGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV ++ + +WDVGGQ IR WR+
Sbjct: 21 LMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ TDGL++VVDS+D R+DD + EL ++ EE L A +L+ ANKQD+ A++ E+
Sbjct: 81 YYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
+ L+L + + R+W I A G+GL EGFDWL
Sbjct: 141 EKLHLNTI-RERNWFIQSTCATRGDGLYEGFDWL 173
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLDN+GKTT++ ++ ED S I+PT GFNIK+V Q + LN+WD+GG R IR YWR+
Sbjct: 8 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRS 67
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YFE TD L++V+DS+D +R ++ EL LL+EE+LS +LI ANKQD+ A +EIA
Sbjct: 68 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 127
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
+ LNL + + R W+I CSA TGEG+ +G +W+ +++
Sbjct: 128 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV Y+ + +WDVGGQ IR WR+
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 63
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF+ T GL++VVDS+D R+++ + EL +L E+ L A LL+ ANKQD+ A+ EI
Sbjct: 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
L L ++ + R+W I A +G+GL EG DWL
Sbjct: 124 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 156
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 145 bits (367), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV Y+ + +WDVGGQ IR WR+
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF+ T GL++VVDS+D R+++ + EL +L E+ L A LL+ ANKQD+ A+ EI
Sbjct: 81 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
L L ++ + R+W I A +G+GL EG DWL
Sbjct: 141 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 173
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 145 bits (367), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV Y+ + +WDVGGQ IR WR+
Sbjct: 20 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 79
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF+ T GL++VVDS+D R+++ + EL +L E+ L A LL+ ANKQD+ A+ EI
Sbjct: 80 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 139
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
L L ++ + R+W I A +G+GL EG DWL
Sbjct: 140 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 172
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 3/155 (1%)
Query: 20 LMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
LMVGLD +GKTTI+ K+ GE + I PT+GFN++TV Y+ + +WDVGGQ IR WR
Sbjct: 169 LMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 227
Query: 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
+YF+ T GL++VVDS+D R+++ + EL +L E+ L A LL+ ANKQD+ A+ EI
Sbjct: 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI 287
Query: 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
L L ++ + R+W I A +G+GL EG DWL
Sbjct: 288 TDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 321
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV Y+ +WDVGGQ IR WR+
Sbjct: 33 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRH 92
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF+ T GL++VVDS+D R+ + EL +L+E+ L A LL+ ANKQD+ A+ +E+
Sbjct: 93 YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELT 152
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
L L+ + ++R W + A G GL +G DWL +++ R
Sbjct: 153 DKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 106/163 (65%), Gaps = 3/163 (1%)
Query: 20 LMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
LM+GLD +GKTTI+ K+ G+ + I PT+GFN++TVTY+ N+WDVGGQ IR WR
Sbjct: 326 LMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR 384
Query: 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
+Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 385 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 444
Query: 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
+ L L + + R+W + A +G+GL EG WL + S++
Sbjct: 445 QEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV Y+ + +WDVGG IR WR+
Sbjct: 6 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRH 65
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF+ T GL++VVDS+D R+++ + EL +L E+ L A LL+ ANKQD+ A+ EI
Sbjct: 66 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 125
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
L L ++ + R+W I A +G+GL EG DWL
Sbjct: 126 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 158
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLD +GKTTI+ ++ + PT+GFN++TVTY+ +WD+GG +IR YWR
Sbjct: 8 LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC 67
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ TD +++VVDS D R+ K EL +L+EE L A L++ ANKQD+ A+T +E+A
Sbjct: 68 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMA 127
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
L L A+ K R W+I SA G GL E +WLV+ + S
Sbjct: 128 NSLGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGGQ IR WR+
Sbjct: 17 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 76
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 77 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 136
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 137 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGGQ IR WR+
Sbjct: 16 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 75
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 76 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 135
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 136 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGGQ IR WR+
Sbjct: 4 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 63
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 64 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 124 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTT++ K+ + PT+GFN++TV Y+ + +WDVGGQ IRS WR+
Sbjct: 4 LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH 63
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T+G+++VVDS+D R+ + + + +L E+ L A+ L+ ANKQD+ A++ EI
Sbjct: 64 YYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEIT 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
+ L L ++ + R W I A +GEGL EG +WL
Sbjct: 124 EKLGLHSI-RNRPWFIQATCATSGEGLYEGLEWL 156
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTT++ K+ + PT+GFN++TV Y+ + +WDVGGQ IRS WR+
Sbjct: 21 LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T+G+++VVDS+D R+ + + + +L E+ L A+ L+ ANKQD+ A++ EI
Sbjct: 81 YYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
+ L L ++ + R W I A +GEGL EG +WL
Sbjct: 141 EKLGLHSI-RNRPWFIQATCATSGEGLYEGLEWL 173
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGGQ IR WR+
Sbjct: 4 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 63
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 64 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176
+ L L + + R+W + A +G+GL EG WL +
Sbjct: 124 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTT++ K+ + PT+GFN++TV Y+ + +WDVGGQ IRS WR+
Sbjct: 21 LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T+G+++V+DS+D R+ + + + +L E+ L A L+ ANKQD+ A++ EI
Sbjct: 81 YYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
+ L L ++ + R W I A +GEGL EG +WL ++ ++
Sbjct: 141 EKLGLHSI-RNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTTI+ K+ + PT+GFN++TV Y+ +WDVGGQ IR W++
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF+ T GL++VVDS+D R+ + EL +L + L A LL+ ANKQD+ A+ +E+
Sbjct: 81 YFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
L L+++ + R W + A G GL EG DWL +++ R
Sbjct: 141 DKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGG IR WR+
Sbjct: 6 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRH 65
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 66 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 125
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 126 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 164
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGG IR WR+
Sbjct: 17 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRH 76
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 77 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 136
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 137 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGG IR WR+
Sbjct: 7 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRH 66
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + + A +LI ANKQD+ A+ P EI
Sbjct: 67 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 126
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 127 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L +GLD +GKTTI+ K+ + PT+GFN++TVTY+ N+WDVGGQ IR WR+
Sbjct: 4 LXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 63
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T GL++VVD +D R+D+ + EL ++ + A +LI ANKQD+ A P EI
Sbjct: 64 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQ 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+ L L + + R+W + A +G+GL EG WL + S
Sbjct: 124 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKTT++ K+ + PT+GFN++ V Y + +WDVGGQ IRS WR+
Sbjct: 21 LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T+G+++VVDS+D R+ + + + +L E+ L A+ L+ ANKQD+ A++ EI
Sbjct: 81 YYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
+ L L ++ + R W I A +GEGL EG +WL
Sbjct: 141 EKLGLHSI-RNRPWFIQATCATSGEGLYEGLEWL 173
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
Query: 1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
MGL+ ++VGLDN+GKTTI+ + + SPT+G N++ + +
Sbjct: 1 MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT 60
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
+WD+GGQ ++RS W Y+ T+ ++ VVDS D RL K EL +L E L A++
Sbjct: 61 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
LI ANKQD+ G +T EI+K L L ++ K W I C A TGEGL +G +W+ I R
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSI-KDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LMVGLD +GKT+I+ K+ + PT+GFN++TV Y+ + +WDVGGQ IR WR+
Sbjct: 21 LMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y++ T +++VVDS+D R+ + + EL +L E+ + A LL+ ANK D+ A++ +E+
Sbjct: 81 YYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
+ L L+ + K R W A G+GL EG DWL ++
Sbjct: 141 EKLGLQTI-KNRKWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
LM+GLDN+GKT+I+ +++ D PT+G N++T+ Y+ + +WD+GGQ +R YWR
Sbjct: 26 LMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC 85
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF TD +++VVDS+D R+ K EL LL E+ L + LLI ANKQD+ A + EIA
Sbjct: 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIA 145
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
+ L + ++ R W IV S+ TG+GL+EG DWLV+
Sbjct: 146 EQLGVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVE 180
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Query: 1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
MG+L ++VGLDN+GKTTI+ + + + SPT+G N++ +
Sbjct: 1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
+WD+GGQ ++RS W Y+ T+ ++ VVDS+D R+ + EL +L E L A L
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
LI ANKQD+ +T EI++ L L ++ K W I C A TGEGL +G +W++ + R
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
Query: 181 I 181
+
Sbjct: 180 L 180
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
Query: 1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
MG+L ++VGLDN+GKTTI+ + + + SPT+G N++ +
Sbjct: 1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
+WD+GGQ ++RS W Y+ T+ ++ VVDS+D R+ + EL +L E L A L
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
LI ANKQD+ +T EI++ L L ++ K W I C A TGEGL +G +W++ + R
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
++VGLDN+GKTTI+ + + + SPT+G N++ + +WD+GGQ ++RS W
Sbjct: 25 IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 84
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T+ ++ VVDS+D R+ + EL +L E L A LLI ANKQD+ +T EI+
Sbjct: 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS 144
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
+ L L ++ K W I C A TGEGL +G +W++
Sbjct: 145 QFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMM 178
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
++VGLDN+GKTTI+ + + + SPT+G N++ + +WD+GGQ ++RS W
Sbjct: 26 IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 85
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ T+ ++ VVDS+D R+ + EL +L E L A LLI ANKQD+ +T EI+
Sbjct: 86 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS 145
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
+ L L ++ K W I C A TGEGL +G +W++
Sbjct: 146 QFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMM 179
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L++GLD +GKTTI+ ++ + PT+GFN++TVTY+ +WD+GG +IR YWR
Sbjct: 11 LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC 70
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y+ TD +++VVDS D R+ K EL L+EE L A L++ ANKQD A T +E A
Sbjct: 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXA 130
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
L L A+ K R W+I SA G GL E +WLV+ + SR
Sbjct: 131 NSLGLPAL-KDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 20 LMVGLDNSGKTTIV--LKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
L +GLDNSGKTTI+ LK + + I PT+GF+I+ + ++D+ GQ R+ W
Sbjct: 25 LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW 84
Query: 78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL--ANKQDINGALTP 135
+Y+++ +++V+DSSD R+ K ELD LL + + IL ANK D+ A+T
Sbjct: 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS 144
Query: 136 TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
+++++L LE + K + W I A GEGL EG DWL I +
Sbjct: 145 VKVSQLLCLENI-KDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSV--ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
+M GLDNSGKTTI+ ++ +S I+ T+G+N++T + ++D+GG + R W
Sbjct: 21 VMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLW 80
Query: 78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE----RLSGA---SLLILANKQDIN 130
Y++ D +++VVDSSD RL K E+ +LK E L G L ANK D
Sbjct: 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140
Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
GA T E+ ++L+L + + I + G G+ EGF WL Q+ ASR
Sbjct: 141 GAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL-QETASR 189
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 21 MVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+VGL SGKTT V I +G+ + PT+GFN++ +T T+ +WD+GGQ RS W
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 86
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y +V++VD++D +++ K EL NLL + +L G +L+L NK+D+ GAL E+
Sbjct: 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 146
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
+ +NL A+ + R S + + WL+Q SR
Sbjct: 147 EKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 21 MVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+VGL SGKTT V I +G+ + + PT+GFN++ VT T+ IWD+GGQ RS W
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWER 86
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y + +V+++D++D +++ + EL NLL + +L G +L+L NK+D+ AL ++
Sbjct: 87 YCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLI 146
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
+ +NL A+ + R S + + WL+Q SR
Sbjct: 147 EKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 21 MVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+VGL SGKTT V I +G+ + PT+GFN++ +T T+ +WD+GGQ RS W
Sbjct: 36 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 95
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y +V++VD++D +++ K EL NLL + +L G +L+L NK+D+ GAL E+
Sbjct: 96 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 155
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
+ +NL A+ + R S + + WL+Q
Sbjct: 156 EKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L +GLDN+GKTT++ + + + + PT + + +D+GG R W++
Sbjct: 5 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 64
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF + +G+V++VD++D R D+ ++ELD L L +IL NK D A++ E+
Sbjct: 65 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 124
Query: 140 KVLNL------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
L L + ++ R ++ CS G LE F WL Q
Sbjct: 125 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 166
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
L +GLDN+GKTT++ + + + + PT + + +D+GG R W++
Sbjct: 27 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 86
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
YF + +G+V++VD++D R D+ ++ELD L L +IL NK D A++ E+
Sbjct: 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 146
Query: 140 KVLNL------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
L L + ++ R ++ CS G LE F WL Q I
Sbjct: 147 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+ +GLDN+GKTT++ + + PTL + +T T +D+GG R W+N
Sbjct: 39 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKN 98
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y +G+V++VD +D RL + K+EL+ L+ +E +S +LIL NK D A++ ++
Sbjct: 99 YLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLR 158
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
++ L R ++ CS +G EGF WL Q I
Sbjct: 159 EIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+ +GLDN+GKTT++ + + PTL + +T T +D+GG R W+N
Sbjct: 26 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKN 85
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y +G+V++VD +D RL + K ELD+L+ +E ++ +LIL NK D A++ +
Sbjct: 86 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 145
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
++ L R ++ CS +G EGF W+ Q I
Sbjct: 146 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+ +GLDN+GKTT++ + + PTL + +T T +D+GG R W+N
Sbjct: 29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKN 88
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y +G+V++VD +D RL + K ELD+L+ +E ++ +LIL NK D A++ +
Sbjct: 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 148
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
++ L R ++ CS +G EGF W+ Q I
Sbjct: 149 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
+ +GLDN+GKTT++ + + PTL + +T T +D+GG R W+N
Sbjct: 20 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKN 79
Query: 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
Y +G+V++VD +D RL + K ELD+L+ +E ++ +LIL NK D A++ +
Sbjct: 80 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 139
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
++ L R ++ CS +G EGF W+ Q I
Sbjct: 140 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GKT ++ + + ED S T+G F I+T+ ++ L IWD GQ
Sbjct: 12 LLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
R+ Y+ G++ V D ++ + D+ + + N ++E + +IL NK D+N
Sbjct: 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGNKCDVN 126
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GKT ++ + + ED S T+G F I+T+ ++ L IWD GQ
Sbjct: 10 LLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
R+ Y+ G++ V D ++ + D+ + + N ++E + +IL NK D+N
Sbjct: 69 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGNKCDVN 124
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 20 LMVGLDNSGKTTIVLKINGE---DTSVISPTLGFNIKTVTYQKYT--LNIWDVGGQRTIR 74
L++G GK+ ++L+ + D+ + + + F I+T++ + T L IWD GQ R
Sbjct: 13 LLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFR 72
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDING 131
+ +Y+ G++ V D +D D+ K E+D E + L++ NK D
Sbjct: 73 TITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAME----NVNKLLVGNKCD--- 125
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
L + + + K + SA + + F + +I R+
Sbjct: 126 -LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 20 LMVGLDNSGKTTIVLKI-NGEDTSVISPTLG--FNIKT--VTYQKYTLNIWDVGGQRTIR 74
++ G GK++ ++++ E IS TLG F +KT V ++ L +WD GQ R
Sbjct: 32 VLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR 91
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
S ++YF + DG++ + D + + + + +D ++++ ++++ NK DI
Sbjct: 92 SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD-MIEDAAHETVPIMLVGNKADIR 146
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 20 LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GK++++L+ +DT ++ T+G F +KT++ K L IWD GQ
Sbjct: 19 LIIGESGVGKSSLLLRFT-DDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
R+ +Y+ G++ V D + RR D ++LDN L E L + DI L
Sbjct: 78 RTLTPSYYRGAQGVILVYDVT--RR--DTFVKLDNWLNE-------LETYCTRNDIVNXL 126
Query: 134 TPTEIAK----VLNLEAMDKTRHWK--IVGCSAYTGEGLLEGFDWLVQDI 177
+I K V E + R + SA T +G+ F+ LV+ I
Sbjct: 127 VGNKIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 20 LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GK+ ++++ + + S I+ T+G F IKTV +K L IWD GQ
Sbjct: 7 LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
R+ Y+ G++ V D +D R + K + E A LL++ NK D
Sbjct: 66 RTITTAYYRGAXGIILVYDITDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSD----- 119
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T + EA+ K + SA + + E F L + I +I
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 20 LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GK+ ++++ + + S I+ T+G F IKTV +K L IWD GQ
Sbjct: 7 LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
R+ Y+ G++ V D +D R + K + E A LL++ NK D+
Sbjct: 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSDM---- 120
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T + EA+ K + SA + + E F L + I +I
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 20 LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GK+ ++++ + + S I+ T+G F IKTV +K L +WD GQ
Sbjct: 7 LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQERF 65
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
R+ Y+ G++ V D +D R + K + E A LL++ NK D
Sbjct: 66 RTITTAYYRGAXGIILVYDVTDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSD----- 119
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T + EA+ K + SA + + E F L + I +I
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 20 LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GK+ ++++ + + S I+ T+G F IKTV +K L +WD GQ
Sbjct: 11 LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQERF 69
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
R+ Y+ G++ V D +D R + K + E A LL++ NK D+
Sbjct: 70 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSDME--- 125
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T + EA+ K + SA + + E F L + I +I
Sbjct: 126 --TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 20 LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
L++G GK+ ++++ + + S I+ T+G F IKTV +K L +WD GQ
Sbjct: 24 LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
R+ Y+ G++ V D +D R + K + E A LL++ NK D+
Sbjct: 83 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSDM---- 137
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T + EA+ K + SA + + E F L + I +I
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 20 LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
L++G GK+ ++L+ + + T+ T+G F IKTV T L IWD GQ R
Sbjct: 25 LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 84
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDIN 130
+ +Y+ + G++ V D +D + KM L + +R + +++ L++ NK D+
Sbjct: 85 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDLK 139
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD---------- 95
PT G T++ ++DVGGQR+ R W + FE +++ V SD
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 96 LRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+ R+ + D++ + + S+++ NK+D+
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 20 LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
L++G GK+ ++L+ + + T+ T+G F IKTV T L IWD GQ R
Sbjct: 12 LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDI 129
+ +Y+ + G++ V D +D + KM L + +R + +++ L++ NK D+
Sbjct: 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDL 125
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 20 LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
L++G GK+ ++L+ + + T+ T+G F IKTV T L IWD GQ R
Sbjct: 12 LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDI 129
+ +Y+ + G++ V D +D + KM L + +R + +++ L++ NK D+
Sbjct: 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDL 125
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL--------- 96
PT G + T++ ++DVGGQR+ R W FE +++ V SD
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 97 -RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
R+ + D++ + + S+++ NK+D+
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
L++G +GK+ ++ K + I G I V + L IWD GQ R
Sbjct: 14 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 73
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS---LLILANKQDING 131
S R+Y+ G + V D + + L N L + R+ + +++ NK+D++
Sbjct: 74 SVTRSYYRGAAGALLVYDITSRETYN----ALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T L + + SA TGE + E F + I ++I
Sbjct: 130 DREVT----FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
+++G GKT+++ + +DT T+G F IKTV +K L IWD GQ
Sbjct: 30 IIIGSRGVGKTSLMERFT-DDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDD----CKMELDNLLKEERLSGASLLILANKQDI 129
S Y+ G++ V D + DD KM +D E+ A LL++ NK D
Sbjct: 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM-IDKYASED----AELLLVGNKLDC 143
Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
T EI + + + + SA + E F LV DI ++
Sbjct: 144 E---TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 20 LMVGLDNSGKTTIVLKINGEDT---SVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRT 72
L++G GK+ ++L+ +DT S IS T+G F I+T+ T L IWD GQ
Sbjct: 20 LLIGDSGVGKSCLLLRF-ADDTYTESYIS-TIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKCDL 133
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 20 LMVGLDNSGKTTIVLKIN-GEDTSVISPTLG--FNIKTVTYQ--KYTLNIWDVGGQRTIR 74
++VG + GKT +V + G + T+G F +KT+ Q + L IWD GQ R
Sbjct: 33 VLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR 92
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDINGA 132
+ ++Y+ +G + D + ++++ K +G+++ L++ NK D+
Sbjct: 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK---YAGSNIVQLLIGNKSDL--- 146
Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162
+E+ +V EA H+ I+ C+ T
Sbjct: 147 ---SELREVSLAEAQSLAEHYDIL-CAIET 172
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 22/170 (12%)
Query: 21 MVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIR 74
++G GK++IV + ED+ I+PT+G F KTV YQ + IWD GQ R
Sbjct: 10 LLGDTGVGKSSIVWRF-VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFR 68
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDING 131
+ Y+ + + V D + ++ L N ++E R G +++A NK D+
Sbjct: 69 ALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-- 122
Query: 132 ALTPTEIAKVLNLEAMD--KTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
T++ +V+ +A D + H V SA + E F + + I S
Sbjct: 123 ----TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 168
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 29 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 87
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 88 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 142
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 37 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 150
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 10 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 68
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 69 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 123
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 3 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 61
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 62 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 116
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 10 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 68
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 69 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 123
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 2 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKCDL 115
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 13 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 71
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D + K E+D E + L++ NK D+
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASE----NVNKLLVGNKSDL 126
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 13 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 71
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D + K E+D E + L++ NK D+
Sbjct: 72 RTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASE----NVNKLLVGNKSDL 126
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 20 LLIGDSGVGKNCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 78
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
R+ +Y+ G++ V D +D ++ K E+D E + L++ NK D+
Sbjct: 79 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 133
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 16/170 (9%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
L++G +GK+ ++ K + I G + V + L IWD GQ R
Sbjct: 29 LVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR 88
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER-LSGASLLIL--ANKQDING 131
S R+Y+ G + V D + + L L + R L+ +++++ NK+D++
Sbjct: 89 SVTRSYYRGAAGALLVYDITSRETYNS----LAAWLTDARTLASPNIVVILCGNKKDLD- 143
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
P L + + SA TGE + E F + I ++I
Sbjct: 144 ---PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV----------DSSDLRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V + R+ + M
Sbjct: 170 TFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLML 229
Query: 106 LDNLLKEERLSGASLLILANKQDING 131
D++ + S+++ NK+D+ G
Sbjct: 230 FDSICNNKFFIDTSIILFLNKKDLFG 255
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 16/169 (9%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
L++G +GK+ ++ K + I G I V + L IWD GQ R
Sbjct: 15 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 74
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS---LLILANKQDING 131
S R+Y+ G + V D + + L N L + R+ + +++ NK+D++
Sbjct: 75 SVTRSYYRGAAGALLVYDITSRETYN----ALTNWLTDARMLASQNIVIILCGNKKDLDA 130
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
T L + + SA TGE + E F + I ++
Sbjct: 131 DREVT----FLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
L++G GK+ ++L+ +DT S T+G F I+T+ T L IWD GQ
Sbjct: 12 LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 70
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKE 112
R+ +Y+ G++ V D +D ++ K E+D E
Sbjct: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE 112
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 164 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 223
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 224 FDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 159 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 218
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 219 FDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 161 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 220
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 221 FDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 160 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 219
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 220 FDSICNNKWFTDTSIILFLNKKDL 243
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 158 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 217
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 218 FDSICNNKWFTDTSIILFLNKKDL 241
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 163 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 222
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 223 FDSICNNKWFTDTSIILFLNKKDL 246
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 161 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 220
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 221 FDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 192 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 251
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 252 FDSICNNKWFTDTSIILFLNKKDL 275
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 196 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 255
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 256 FDSICNNKWFTDTSIILFLNKKDL 279
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 164 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 223
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 224 FDSICNNKWFTDTSIILFLNKKDL 247
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 165 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 224
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 225 FDSICNNKWFTDTSIILFLNKKDL 248
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 166 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 225
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 226 FDSICNNKWFTDTSIILFLNKKDL 249
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 190 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 249
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 250 FDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 159 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 218
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 219 FDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 248
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 249 FDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 248
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 249 FDSICNNKWFTDTSIILFLNKKDL 272
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVV----------DSSDLRRLDDCKMELDNLLK 111
++ DVGGQR+ R W ++F D ++V + + RL + ++
Sbjct: 163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXT 222
Query: 112 EERLSGASLLILANKQDI 129
E L GA LI NK D+
Sbjct: 223 NEFLKGAVKLIFLNKXDL 240
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 159 TFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 218
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 219 FDSICNNKWFTETSIILFLNKKDL 242
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 166 TFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 225
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 226 FDSICNNKWFTETSIILFLNKKDL 249
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 166 TFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 225
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 226 FDSICNNKWFTETSIILFLNKKDL 249
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
+++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 161 SFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 220
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 221 FDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 189 TFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 248
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 249 FDSICNNKWFTETSIILFLNKKDL 272
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTY--QKYTLNIWDVGGQRTIR 74
L++G GK++++L+ S + + + F I+TV +K L IWD GQ R
Sbjct: 13 LIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR 72
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
+ Y+ T G++ V D + + K L + + +++ NK D
Sbjct: 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKND 124
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIR 74
L++G + GKT+ + + + T T+G F +KTV ++ L IWD GQ R
Sbjct: 27 LIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-L 133
+ Y+ G + + D ++ + + + +K A ++++ NK D+ +
Sbjct: 87 TITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEERV 145
Query: 134 TPTEIAKVL 142
PTE ++L
Sbjct: 146 VPTEKGQLL 154
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTS-----VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
+++G GK+ ++L+ + I G + T+ ++ L IWD GQ + R
Sbjct: 14 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 73
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS---LLILANKQDING 131
S R+Y+ G + V D + RR D L L++ R S ++++ NK D+
Sbjct: 74 SITRSYYRGAAGALLVYDIT--RR--DTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE- 128
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170
+ E+ K EA + + SA T + E F
Sbjct: 129 --SRREVKKEEG-EAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DV GQR+ R W + FE +++ V SD + R+ +
Sbjct: 190 TFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 249
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 250 FDSICNNKCFTDTSIILFLNKKDL 273
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DV GQR+ R W + FE +++ V SD + R+ +
Sbjct: 190 TFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 249
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 250 FDSICNNKWFTDTSIILFLNKKDL 273
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLG------FNIKTVTY--QKYTLNIWDVGGQR 71
+++G GKT +V + + P G F IKTV +K L IWD GQ
Sbjct: 30 VLIGNAGVGKTCLVRRFT---QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 72 TIRSYWRNYFEQTDGLVWVVD 92
RS ++Y+ + L+ D
Sbjct: 87 RFRSITQSYYRSANALILTYD 107
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
T++ ++DVG QR+ R W + FE +++ V SD + R+ +
Sbjct: 189 TFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 248
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 249 FDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV----------VDSSDLRRLDDCKME 105
+++ ++DVGGQR+ R W + FE ++++ V+ ++ R+ +
Sbjct: 160 SFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHL 219
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
+++ + S+++ NK+D+
Sbjct: 220 FNSICNHRYFATTSIVLFLNKKDV 243
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKME 105
+++ ++DVGGQR+ R W + FE +++ V SD + R+ +
Sbjct: 192 SFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHL 251
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
+++ + + S+++ NK+D+
Sbjct: 252 FNSICNNKWFTDTSIILFLNKKDL 275
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 43 VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW----------VVD 92
V PT G Q + DVGGQR+ R W + FE +++ +V+
Sbjct: 170 VCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 229
Query: 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
S + R+++ K ++ +S+++ NK+D+
Sbjct: 230 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 33 VLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW--- 89
VL++ T +I F++++V ++ + DVGGQR+ R W + FE +++
Sbjct: 147 VLRVRVPTTGIIE--YPFDLQSVIFR-----MVDVGGQRSERRKWIHCFENVTSIMFLVA 199
Query: 90 -------VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+V+S + R+++ K ++ +S+++ NK+D+
Sbjct: 200 LSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 46 PTLG-----FNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---- 96
PT G F IK V ++ + DVGGQR+ R W F+ ++++V SS+
Sbjct: 163 PTKGIHEYDFEIKNVPFK-----MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 97 ------RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
RL + + ++ S S+++ NK D+
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 16/169 (9%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
L++G +GK+ ++ K + I G I V + L IWD G R
Sbjct: 12 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFR 71
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS---LLILANKQDING 131
S R+Y+ G + V D + + L N L + R+ + +++ NK+D++
Sbjct: 72 SVTRSYYRGAAGALLVYDITSRETYN----ALTNWLTDARMLASQNIVIILCGNKKDLDA 127
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
T L + + SA TGE + E F + I ++
Sbjct: 128 DREVT----FLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 46 PTLG-----FNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---- 96
PT G F IK V ++ + DVGGQR+ R W F+ ++++V SS+
Sbjct: 187 PTKGIHEYDFEIKNVPFK-----MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241
Query: 97 ------RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
RL + + ++ S S+++ NK D+
Sbjct: 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVW---VVDSSDLRRLDDCKMELDNLLKEERLSG 117
T+ IWD GQ RS ++ +D + V DS + L + K E +
Sbjct: 61 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 118 ASLLILANKQDINGALTPTEIAKV 141
+IL NK DI TE A+
Sbjct: 121 FPFVILGNKTDIKERQVSTEEAQA 144
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 33 VLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW--- 89
VL++ T +I F++++V ++ + DVGGQR+ R W + FE +++
Sbjct: 173 VLRVRVPTTGIIE--YPFDLQSVIFR-----MVDVGGQRSERRKWIHCFENVTSIMFLVA 225
Query: 90 -------VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+V+S + R+++ K ++ +S+++ NK+D+
Sbjct: 226 LSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
+++G GK+ ++ + + ++ S T+G T T + + IWD GQ R
Sbjct: 17 VLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR 76
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-AL 133
+ Y+ G + V D S ++C L L+E ++ ++ NK D+
Sbjct: 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGNKSDLAHLRA 135
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
PTE +K E SA E + + F+ L+ I ++
Sbjct: 136 VPTEESKTFAQE-----NQLLFTETSALNSENVDKAFEELINTIYQKV 178
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 33 VLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW--- 89
VL++ T +I F++++V ++ + DVGGQR+ R W + FE +++
Sbjct: 175 VLRVRVPTTGIIE--YPFDLQSVIFR-----MVDVGGQRSERRKWIHCFENVTSIMFLVA 227
Query: 90 -------VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+V+S + R+++ K ++ +S+++ NK+D+
Sbjct: 228 LSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 35 KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92
K + I G I V+ QK L IWD GQ R+ R+Y+ G + V D
Sbjct: 39 KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 33 VLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW--- 89
VL++ T +I F++++V ++ + DVGGQR+ R W + FE +++
Sbjct: 173 VLRVRVPTTGIIE--YPFDLQSVIFR-----MVDVGGQRSERRKWIHCFENVTSIMFLVA 225
Query: 90 -------VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+V+S + R+++ K ++ +S+++ NK+D+
Sbjct: 226 LSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTS-----VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
+++G GK+ ++L+ + I G + + ++ L IWD GQ + R
Sbjct: 25 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 84
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
S R+Y+ G + V D + + L++ ++ S ++++ NK D+
Sbjct: 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSSSNMVIMLIGNKSDL 138
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKT----VTYQKYTLNIWDVGGQR 71
++VG GKT ++++ +D + ++ T+G + + V K L +WD GQ
Sbjct: 14 MLVGDSGVGKTCLLVRF--KDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
RS Y+ L+ + D ++ D+ + L + E +L++L NK D
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDVALMLLGNKVDS-- 128
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
+ K + E + K + SA TG + F + +++ R
Sbjct: 129 --AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE PTLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLRDGYYIQAQCAIIMFD 91
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVW---VVDSSDLRRLDDCKMELDNLLKEERLSG 117
T+ IWD GQ RS ++ +D + V DS + L + K E +
Sbjct: 59 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 118
Query: 118 ASLLILANKQDINGALTPTEIAKV 141
+IL NK DI+ TE A+
Sbjct: 119 FPFVILGNKIDISERQVSTEEAQA 142
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVW---VVDSSDLRRLDDCKMELDNLLKEERLSG 117
T+ IWD GQ RS ++ +D + V DS + L + K E +
Sbjct: 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116
Query: 118 ASLLILANKQDINGALTPTEIAKV 141
+IL NK DI+ TE A+
Sbjct: 117 FPFVILGNKIDISERQVSTEEAQA 140
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 35 KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92
K + I G I V+ QK L IWD GQ R+ R+Y+ G + V D
Sbjct: 54 KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYD 111
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
+++G GKT++VL K N + + + + + ++ L IWD GQ
Sbjct: 24 VLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFH 83
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDI 129
+ Y+ ++G + V D +D +D ++ N +KE R + L I+ NK D+
Sbjct: 84 ALGPIYYRDSNGAILVYDITD----EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 137
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 20 LMVGLDNSGKTTIVLKI-NGE----DTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
L VGL +SGKT + +++ G+ TS+ + + + + +L + D+ G ++R
Sbjct: 11 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNN--NRGNSLTLIDLPGHESLR 68
Query: 75 SYWRNYFEQT-DGLVWVVDSSDLRR-LDDCKMELDNLLKEERL--SGASLLILANKQDIN 130
+ F+ + +V+VVDS+ +R + D L +L + + SLLI NKQDI
Sbjct: 69 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128
Query: 131 GALTPTEIAKVLNLE 145
A + I + L E
Sbjct: 129 MAKSAKLIQQQLEKE 143
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
+++G GKT++VL K N + + + + + ++ L IWD GQ
Sbjct: 10 VLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDI 129
+ Y+ ++G + V D +D +D ++ N +KE R + L I+ NK D+
Sbjct: 70 ALGPIYYRDSNGAILVYDITD----EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
+++G GKT++VL K N + + + + + ++ L IWD GQ
Sbjct: 10 VLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDI 129
+ Y+ ++G + V D +D +D ++ N +KE R + L I+ NK D+
Sbjct: 70 ALGPIYYRDSNGAILVYDITD----EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIR 74
L++G + GKT+ + + + T T+G F +KT+ ++ L IWD GQ R
Sbjct: 9 LIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYR 68
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+ Y+ G + + D ++ + + + +K A +L++ NK D+
Sbjct: 69 TITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDM 122
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKME 105
+++ +DVGGQR+ R W + FE +++ V SD R +
Sbjct: 186 SFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKL 245
Query: 106 LDNLLKEERLSGASLLILANKQDI 129
D++ + + S+++ NK+D+
Sbjct: 246 FDSICNNKWFTDTSIILFLNKKDL 269
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE PTLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLRDGYYIQAQCAIIMFD 91
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 20 LMVGLDNSGKTTIVLKI---NGEDTSVISPTLGFNIKTVTYQKYT--LNIWDVGGQRTIR 74
+ +G + GKT+++ + + ++T + + F KT+ + T L +WD GQ R
Sbjct: 10 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
S +Y + V V D +++ +D+ ++ ER S ++++ NK D+
Sbjct: 70 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD-VRTERGSDVIIMLVGNKTDL 123
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIR 74
L++G + GKT+ + + + T T+G F +KTV ++ L IWD GQ R
Sbjct: 26 LLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI-NGAL 133
+ Y+ G + + D ++ + + +K A ++++ NK D+ + +
Sbjct: 86 TITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDERV 144
Query: 134 TPTEIAKVL 142
P E + L
Sbjct: 145 VPAEDGRRL 153
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI-----KTVTYQKYTLNIWDVGGQRTIR 74
+MVGL GKT I K+ + +PT FN+ + V+Y+ Y + D IR
Sbjct: 7 IMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVSYKNYEFFLPDNMEALQIR 66
Query: 75 SYW--------RNYFEQTDGLVWVVDSSDLRR 98
NY +G V V D+++ R
Sbjct: 67 KQCALAALKDVHNYLSHEEGHVAVFDATNTTR 98
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 20 LMVGLDNSGKTTIVLKI---NGEDTSVISPTLGFNIKTVTYQKYT--LNIWDVGGQRTIR 74
+ +G + GKT+++ + + ++T + + F KT+ + T L +WD GQ R
Sbjct: 6 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 65
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
S +Y + V V D ++L +D+ ++ ER S ++++ NK D+
Sbjct: 66 SLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD-VRTERGSDVIIMLVGNKTDL 119
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEE 113
++DVGGQR R W + FE +++ S+ R+ + K D +LK+
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246
Query: 114 RLSGASLLILANKQDI 129
S ++ NK DI
Sbjct: 247 CFEKTSFMLFLNKFDI 262
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 48 LGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD--LRRLDDCKME 105
L +I V K +++ V GQ + + DG+V+V DS+ LR +
Sbjct: 62 LPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRN 121
Query: 106 LDNLLKEERLS--GASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163
+ L E L+ ++I NK+D+ AL P E+ + + +D + ++ A G
Sbjct: 122 MRENLAEYGLTLDDVPIVIQVNKRDLPDAL-PVEMVRAV----VDPEGKFPVLEAVATEG 176
Query: 164 EGLLEGFDWLVQDIASRI 181
+G+ E + + + +R+
Sbjct: 177 KGVFETLKEVSRLVLARV 194
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 21 MVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRS 75
++G GK++IV + + ISPT+G F KTV + + IWD GQ S
Sbjct: 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS 87
Query: 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDIN 130
Y+ + V V D + D L +KE + G +++A NK D++
Sbjct: 88 LAPMYYRGSAAAVIVYDITK----QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
+++G GK+ ++ + ++ ++ S T+G T T + K IWD G R
Sbjct: 14 VLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYR 73
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-AL 133
+ Y+ G + V D S ++C L L+E ++ ++ NK D+
Sbjct: 74 AITSAYYRGAVGALIVYDISKSSSYENCNHWLTE-LRENADDNVAVGLIGNKSDLAHLRA 132
Query: 134 TPTEIAKVLNLE 145
PT+ AK +E
Sbjct: 133 VPTDEAKNFAME 144
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQKYTLN--IWDVGGQRTIR 74
+++G GK++IVL+ D + PT+G F + VT ++T+ IWD GQ
Sbjct: 7 VLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA 66
Query: 75 SYWRNYFEQTDGLVWVVD 92
S Y+ + V D
Sbjct: 67 SLAPXYYRNAQAALVVYD 84
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLDDCKMELD---NLLKE 112
K +++DVGGQR R W F +++VV SS R D+ L NL K
Sbjct: 202 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 261
Query: 113 ----ERLSGASLLILANKQDI 129
L S+++ NKQD+
Sbjct: 262 IWNNRWLRTISVILFLNKQDL 282
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLDDCKMELD---NLLKE 112
K +++DVGGQR R W F +++VV SS R D+ L NL K
Sbjct: 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 275
Query: 113 ----ERLSGASLLILANKQDI 129
L S+++ NKQD+
Sbjct: 276 IWNNRWLRTISVILFLNKQDL 296
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 24/128 (18%)
Query: 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS---DLRRLDDC--KMELDNLLKE 112
+ Y LN D G +G + VVD+ + + L +C ME+D
Sbjct: 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD----- 123
Query: 113 ERLSGASLLILANKQDINGA---LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169
++ + NK D+ A EI ++ ++A D R CSA TG G+ +
Sbjct: 124 -----LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR------CSAKTGVGVQDV 172
Query: 170 FDWLVQDI 177
+ LV+DI
Sbjct: 173 LERLVRDI 180
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY---QKYTLNIWDVGGQRTI 73
+++G GKT+++ + +N + + T+G F K VT + T+ +WD GQ
Sbjct: 12 IILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF 71
Query: 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA---SLLILANKQD 128
+S ++ D V V D ++ ++ K D L ++ +IL NK D
Sbjct: 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
L+I D GGQ + Y +G + V ++ + +D + + + + ++
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 122 ILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
++ NK D+ A T V + +A D R + I + SA T +G+ + F LV++I
Sbjct: 113 LVGNKCDL-AART------VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 52 IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLK 111
+KT+ Y+K D ++IR + RN+ G V VV D L D E+DNL+K
Sbjct: 266 LKTLYYKK-----IDTSALKSIRDFCRNF----PGYVRVVYEEDSGILPDLXGEIDNLVK 316
Query: 112 EERLS 116
ER S
Sbjct: 317 IERKS 321
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 24/128 (18%)
Query: 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS---DLRRLDDC--KMELDNLLKE 112
+ Y LN D G +G + VVD+ + + L +C ME+D
Sbjct: 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD----- 123
Query: 113 ERLSGASLLILANKQDINGA---LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169
++ + NK D+ A EI ++ ++A D R CSA TG G+ +
Sbjct: 124 -----LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR------CSAKTGVGVQDV 172
Query: 170 FDWLVQDI 177
+ LV+DI
Sbjct: 173 LERLVRDI 180
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLDDCKMELD---NLLKE 112
K +++DVGGQR R W F +++VV SS R D+ L NL K
Sbjct: 202 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 261
Query: 113 ----ERLSGASLLILANKQDI 129
L S+++ NKQD+
Sbjct: 262 IWNNRWLRTISVILFLNKQDL 282
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 46 PTLG-----FNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---- 96
PT G F IK V ++ + DVGG R+ R W F+ ++++V SS+
Sbjct: 163 PTKGIHEYDFEIKNVPFK-----MVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 97 ------RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
RL + + ++ S S+++ NK D+
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLDDCKMELD---NLLKE 112
K +++DVGGQR R W F +++VV SS R D+ L NL K
Sbjct: 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 275
Query: 113 ----ERLSGASLLILANKQDI 129
L S+++ NKQD+
Sbjct: 276 IWNNRWLRTISVILFLNKQDL 296
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 19 VLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 78
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 79 GLRDGYYIQAQCAIIMFD 96
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLDDCKMELD---NLLKE 112
K +++DVGGQR R W F +++VV SS R D+ L NL K
Sbjct: 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 275
Query: 113 ----ERLSGASLLILANKQDI 129
L S+++ NKQD+
Sbjct: 276 IWNNRWLRTISVILFLNKQDL 296
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRT--- 72
++VG N GK+T++ ++ ED ++++ G ++ + I D G R+
Sbjct: 247 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306
Query: 73 -------IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN 125
I + E+ D +++V+D+S +D K+ ER+ L++ N
Sbjct: 307 DLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRKI-------LERIKNKRYLVVIN 358
Query: 126 KQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166
K D+ + EI L + RH +V SA GEGL
Sbjct: 359 KVDVVEKINEEEIKNKLGTD-----RH--MVKISALKGEGL 392
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 20 LMVGLDNSGKTTIVLKI---NGEDTSVISPTLGFNIKTVTYQKYT--LNIWDVGGQRTIR 74
+ +G + GKT+++ + + ++T + + F KT+ + T L +WD GQ R
Sbjct: 5 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 64
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
S +Y + V V D +++ +D+ ++ ER S ++++ NK D+
Sbjct: 65 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD-VRTERGSDVIIMLVGNKTDL 118
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 20 LMVGLDNSGKTTIVLKI---NGEDTSVISPTLGFNIKTVTYQKYT--LNIWDVGGQRTIR 74
+ +G + GKT+++ + + ++T + + F KT+ + T L +WD GQ R
Sbjct: 18 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 77
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
S +Y + V V D ++ +D+ ++ ER S ++++ NK D++
Sbjct: 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD-VRTERGSDVIIMLVGNKTDLS 132
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER 114
+K + DVGGQR+ R W F+ ++++V SS E D +L E+R
Sbjct: 197 KKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSS----------EYDQVLMEDR 243
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 48 LGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLDDCKM 104
L +I V K +++ V GQ + + DG+V+V DS+ R + +
Sbjct: 62 LPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRN 121
Query: 105 ELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163
+NL + L ++I NK+D+ AL P E + + +D + ++ A G
Sbjct: 122 XRENLAEYGLTLDDVPIVIQVNKRDLPDAL-PVEXVRAV----VDPEGKFPVLEAVATEG 176
Query: 164 EGLLEGFDWLVQDIASRI 181
+G+ E + + + +R+
Sbjct: 177 KGVFETLKEVSRLVLARV 194
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQK--------YTLNIWDVGGQ 70
+MVG GK+ + L+ + E PT K +Y+K ++I D GQ
Sbjct: 22 IMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ NYF +G + V +++ + +L+ + L++ NK D+
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 131 GALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
+ +V EA ++ W + V SA T + + F L+++I +R
Sbjct: 137 ------DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQK--------YTLNIWDVGGQ 70
+MVG GK+ + L+ + E PT K +Y+K ++I D GQ
Sbjct: 10 IMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ NYF +G + V +++ + +L+ + L++ NK D+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 131 GALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
+ +V EA ++ W + V SA T + + F L+++I +R
Sbjct: 125 ------DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQK--------YTLNIWDVGGQ 70
+MVG GK+ + L+ + E PT K +Y+K ++I D GQ
Sbjct: 18 IMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ NYF +G + V +++ + +L+ + L++ NK D+
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 131 GALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
+ +V EA ++ W + V SA T + + F L+++I +R
Sbjct: 133 ------DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 56 TYQKYTLNIWDVGG--QRTIRSYWRNYFEQTD------GLVWVVDSSDLRRLDDC-KMEL 106
T+ N+ VG R IR+ + NY D ++ VDS R + D
Sbjct: 214 TWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMA 273
Query: 107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVL 142
+ +SG + L+++ +N LTP E+ VL
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVL 309
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 56 TYQKYTLNIWDVGG--QRTIRSYWRNYFEQTD------GLVWVVDSSDLRRLDDC-KMEL 106
T+ N+ VG R IR+ + NY D ++ VDS R + D
Sbjct: 214 TWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMA 273
Query: 107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVL 142
+ +SG + L+++ +N LTP E+ VL
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVL 309
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 56 TYQKYTLNIWDVGG--QRTIRSYWRNYFEQTD------GLVWVVDSSDLRRLDDC-KMEL 106
T+ N+ VG R IR+ + NY D ++ VDS R + D
Sbjct: 214 TWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMA 273
Query: 107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVL 142
+ +SG + L+++ +N LTP E+ VL
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVL 309
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 19 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 78
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 79 GLRDGYYIQAQCAIIMFD 96
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLRDGYYIQAQCAIIMFD 91
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLRDGYYIQAQCAIIMFD 91
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQK--------YTLNIWDVGGQ 70
+MVG GK+ + L+ + E PT K +Y+K ++I D GQ
Sbjct: 8 IMVGSGGVGKSALTLQFMYDEFVEDYEPT-----KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ NYF +G + V +++ + +L+ + L++ NK D+
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 131 GALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
+ +V EA ++ W + V SA T + + F L+++I +R
Sbjct: 123 ------DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLEDGYYIQAQCAIIMFD 91
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
+IWD GQ S Y+ + V D S+ LD K ++ L ++S ++
Sbjct: 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL----KISSNYII 150
Query: 122 IL-ANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
IL ANK D N +L ++ + + + SA TG + F L ++I
Sbjct: 151 ILVANKIDKNKFQVD-----ILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205
Query: 181 I 181
I
Sbjct: 206 I 206
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGG 69
+VG N GK+TI +I GE S++ T G + + Y N+ D GG
Sbjct: 28 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 80
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGG 69
+VG N GK+TI +I GE S++ T G + + Y N+ D GG
Sbjct: 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 60
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 7 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 66
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 67 GLRDGYYIQAQCAIIMFD 84
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLRDGYYIQAQCAIIMFD 91
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
++VG +GKTT V + + GE TLG + + + N+WD GQ
Sbjct: 14 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 73
Query: 75 SYWRNYFEQTDGLVWVVD 92
Y+ Q + + D
Sbjct: 74 GLRDGYYIQAQCAIIMFD 91
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 39/101 (38%)
Query: 29 KTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88
K + I+ + V+ G N + K L +WD GQ RS +F G +
Sbjct: 53 KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFL 112
Query: 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
+ D + + + + + L ++++ NK D+
Sbjct: 113 LMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153
>pdb|2Q8U|A Chain A, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
(Tm1635) At 2.20 A Resolution
pdb|2Q8U|B Chain B, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
(Tm1635) At 2.20 A Resolution
Length = 336
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 52 IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLK 111
+KT+ Y+K D ++IR + RN+ G V VV D L D E+DNL+K
Sbjct: 284 LKTLYYKKI-----DTSALKSIRDFCRNF----PGYVRVVYEEDSGILPDLXGEIDNLVK 334
Query: 112 EE 113
E
Sbjct: 335 IE 336
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 52 IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLK 111
+KT+ Y+K D ++IR RN+ G V VV D L D E+DNL+K
Sbjct: 266 LKTLYYKK-----IDTSALKSIRDSCRNF----PGYVRVVYEEDSGILPDLMGEIDNLVK 316
Query: 112 EERLS 116
ER S
Sbjct: 317 IERKS 321
>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
Length = 319
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 52 IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLK 111
+KT+ Y+K D ++IR RN+ G V VV D L D E+DNL+K
Sbjct: 266 LKTLYYKKI-----DTSALKSIRDSCRNF----PGYVRVVYEEDSGILPDLMGEIDNLVK 316
Query: 112 EER 114
ER
Sbjct: 317 IER 319
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 102 CKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161
C+ E LL E SL I G P EIA +LNLE + WK++G S
Sbjct: 71 CEPEKVKLLTRE----CSLEITGRLNAYAGKNHPPEIADILNLEM--QVTEWKVIGESPI 124
Query: 162 TGEGLLEGFDWLVQDIASR 180
E ++ + Q + +R
Sbjct: 125 DLENIINKDSSIPQKMQNR 143
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 10 VLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 123
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 11 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 70
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 71 SLAPXYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 124
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 10 VLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 123
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 10 VLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 123
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 20 LMVGLDNSGKTT----IVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIR 74
L++G SGK++ I + DT + T+ + + TLN+WD GGQ
Sbjct: 10 LLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-- 67
Query: 75 SYWRNYF-EQTDG-------LVWVVDSSDLRRLDDCKMELDNLLKEERLSG-ASLLILAN 125
+ NYF +Q D L+ V D L D ++ L + + S A + +L +
Sbjct: 68 -FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 126
Query: 126 KQDI 129
K D+
Sbjct: 127 KMDL 130
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 21 MVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRTIRSY 76
++G + GK+++ ++ + G+ PT+ + TV Q+Y L + D GQ +
Sbjct: 6 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 65
Query: 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ Y +G + V + ++ + K+ LL ++++ NK+D++
Sbjct: 66 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 11 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 70
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 71 SLAPMYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 124
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 10 VLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 123
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 21 MVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRTIRSY 76
++G + GK+++ ++ + G+ PT+ + TV Q+Y L + D GQ +
Sbjct: 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 70
Query: 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ Y +G + V + ++ + K+ LL ++++ NK+D++
Sbjct: 71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 10 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ K N +KE + + +++A NK D+
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 123
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 21 MVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRTIRSY 76
++G + GK+++ ++ + G+ PT+ + TV Q+Y L + D GQ +
Sbjct: 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 70
Query: 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ Y +G + V + ++ + K+ LL ++++ NK+D++
Sbjct: 71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 20 LMVGLDNSGKTTIVLK------INGEDTSV----ISPTLGFNIKTVTYQKYTLNIWDVGG 69
+++G +GK+++VL+ + +++++ S TL N TV ++ IWD G
Sbjct: 16 VLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE-----IWDTAG 70
Query: 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NK 126
Q S Y+ + V D ++ + K ++E + G +++A NK
Sbjct: 71 QERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK----KWVQELQAQGNPNMVMALAGNK 126
Query: 127 QDI 129
D+
Sbjct: 127 SDL 129
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 21 MVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRTIRSY 76
++G + GK+++ ++ + G+ PT+ + TV Q+Y L + D GQ +
Sbjct: 9 ILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF 68
Query: 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
+ Y +G + V + ++ + K+ LL ++++ NK+D++
Sbjct: 69 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 61 TLNIWDVGGQRTIRSYWRNYF-EQTDG-------LVWVVDSSDLRRLDDCKMELDNLLKE 112
TLN+WD GGQ + NYF +Q D L+ V D L D ++ L +
Sbjct: 53 TLNLWDCGGQDV---FXENYFTKQKDHIFQXVQVLIHVFDVESTEVLKDIEIFAKALKQL 109
Query: 113 ERLSG-ASLLILANKQDI 129
+ S A + +L +K D+
Sbjct: 110 RKYSPDAKIFVLLHKXDL 127
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLG 49
L+VG+ N+GK+TI+ K+ G+ S + G
Sbjct: 103 LIVGVPNTGKSTIINKLKGKRASSVGAQPG 132
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
L +WD GQ RS +Y + + V D ++ + ++ + ++L ER +
Sbjct: 52 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVIIA 110
Query: 122 ILANKQDI 129
++ NK D+
Sbjct: 111 LVGNKTDL 118
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F +TV T IWD GQ
Sbjct: 7 VLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 66
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
S Y+ + V D ++ D N +KE + + +++A NK D+
Sbjct: 67 SLAPMYYRGAQAAIVVYDITN----TDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIK--TVTYQKYTLNIWDVGGQRTIRS-- 75
++G N GK+TI + GE+ + + P + K Y + D+ G ++ +
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 67
Query: 76 ----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
R+Y E+ D +V +VD++ L R ++L + GA+LL+ NK D+
Sbjct: 68 IDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEM-------GANLLLALNKMDL 120
Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168
+L EI +++ ++K K+V SA G+ E
Sbjct: 121 AKSLG-IEI----DVDKLEKILGVKVVPLSAAKKMGIEE 154
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIK--TVTYQKYTLNIWDVGGQRTIRS-- 75
++G N GK+TI + GE+ + + P + K Y + D+ G ++ +
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 67
Query: 76 ----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
R+Y E+ D +V +VD++ L R ++L + GA+LL+ NK D+
Sbjct: 68 IDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEM-------GANLLLALNKMDL 120
Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168
+L EI +++ ++K K+V SA G+ E
Sbjct: 121 AKSLG-IEI----DVDKLEKILGVKVVPLSAAKKMGIEE 154
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
+++G GK+++VL+ + G+ T+G F ++V T IWD GQ
Sbjct: 12 VLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYH 71
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI--LANKQDI 129
S Y+ + V D ++ K + L +R + S++I NK D+
Sbjct: 72 SLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL---QRQASPSIVIALAGNKADL 125
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIK--TVTYQKYTLNIWDVGGQRTIRS-- 75
++G N GK+TI + GE+ + + P + K Y + D+ G ++ +
Sbjct: 9 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 68
Query: 76 ----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
R+Y E+ D +V +VD++ L R ++L GA+LL+ NK D+
Sbjct: 69 IDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXE-------XGANLLLALNKXDL 121
Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168
+L EI +++ ++K K+V SA G+ E
Sbjct: 122 AKSLG-IEI----DVDKLEKILGVKVVPLSAAKKXGIEE 155
>pdb|1WPB|A Chain A, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|B Chain B, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|C Chain C, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|D Chain D, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|E Chain E, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|F Chain F, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|G Chain G, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|H Chain H, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|I Chain I, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|J Chain J, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|K Chain K, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|L Chain L, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|M Chain M, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|N Chain N, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|O Chain O, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|P Chain P, Structure Of Escherichia Coli Yfbu Gene Product
Length = 172
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYT--LNIWDV 67
G ++ + G T + T GFN +T ++KY LN+W
Sbjct: 113 GYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHA 154
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 28 GKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIRSYWRNYFE 82
GK+++VL+ + G+ T+G F +TV T IWD GQ S Y+
Sbjct: 18 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR 77
Query: 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDI 129
+ V D ++ K N +KE + + +++A NK D+
Sbjct: 78 GAQAAIVVYDITNEESFARAK----NWVKELQRQASPNIVIALSGNKADL 123
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIK--TVTYQKYTLNIWDVGGQRTIRS-- 75
++G N GK+TI + GE+ + + P + K Y + D+ G ++ +
Sbjct: 12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 71
Query: 76 ----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
R+Y E+ D +V +VD++ L R ++L + GA+LL+ NK D+
Sbjct: 72 IDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEM-------GANLLLALNKMDL 124
Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168
+L EI +++ ++K K+V SA G+ E
Sbjct: 125 AKSLG-IEI----DVDKLEKILGVKVVPLSAAKKMGIEE 158
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRTIR 74
+++G GKT+++ + +N + ++ T+G + T V + T+ IWD GQ +
Sbjct: 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ 71
Query: 75 SYWRNYFEQTDGLVWVVD---SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
S ++ D V V D + + LD + E ++L NK D+
Sbjct: 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
Query: 132 ALTPTEIAKV 141
T+ A+
Sbjct: 132 RQVATKRAQA 141
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRTIR 74
+++G GKT+++ + +N + ++ T+G + T V + T+ IWD GQ +
Sbjct: 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ 71
Query: 75 SYWRNYFEQTDGLVWVVD---SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
S ++ D V V D + + LD + E ++L NK D+
Sbjct: 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
Query: 132 ALTPTEIAKV 141
T+ A+
Sbjct: 132 RQVATKRAQA 141
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 20 LMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRTIR 74
+++G GKT+++ + +N + ++ T+G + T V + T+ IWD GQ +
Sbjct: 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ 71
Query: 75 SYWRNYFEQTDGLVWVVD---SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
S ++ D V V D + + LD + E ++L NK D
Sbjct: 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFEN 131
Query: 132 ALTPTEIAKV 141
T+ A+
Sbjct: 132 RQVATKRAQA 141
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 36/183 (19%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRT--- 72
++ G N+GK+T++ + G++ +++S G + + + K + D G R
Sbjct: 237 VIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296
Query: 73 ------IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126
IR R + D +++++D RLDD E+ L A L +ANK
Sbjct: 297 EIEHEGIRR-SRMKMAEADLILYLLDLGT-ERLDDELTEIRELKAAH--PAAKFLTVANK 352
Query: 127 QDINGALTPTEIAKVLNLEAMDKT----RHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
D + N +A+ + +++G SA G+G+ D L Q + +
Sbjct: 353 LD-----------RAANADALIRAIADGTGTEVIGISALNGDGI----DTLKQHMGDLVK 397
Query: 183 LLD 185
LD
Sbjct: 398 NLD 400
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK--MELDNLLKEERLSGA 118
TL IWD+GGQ Y G++ V D ++ + ++ + + + EE +
Sbjct: 57 TLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQP 116
Query: 119 SLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
+ ++ NK D+ T + + + H+ SA TG+ + F + +I
Sbjct: 117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHF----VSAKTGDSVFLCFQKVAAEI 171
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
+++G GK+ ++ + + ++ S T+G T + Q IWD GQ R
Sbjct: 24 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR 83
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-AL 133
+ Y+ G + V D + ++ + L L++ S ++++ NK D+
Sbjct: 84 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHLRA 142
Query: 134 TPTEIAKVL 142
PT+ A+
Sbjct: 143 VPTDEARAF 151
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
+++G GK+ ++ + + ++ S T+G T + Q IWD GQ R
Sbjct: 33 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR 92
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-AL 133
+ Y+ G + V D + ++ + L L++ S ++++ NK D+
Sbjct: 93 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHLRA 151
Query: 134 TPTEIAKVL 142
PT+ A+
Sbjct: 152 VPTDEARAF 160
>pdb|3IUK|A Chain A, Crystal Structure Of Putative Bacterial Protein Of Unknown
Function (Duf885, Pf05960.1, ) From Arthrobacter
Aurescens Tc1, Reveals Fold Similar To That Of M32
Carboxypeptidases
pdb|3IUK|B Chain B, Crystal Structure Of Putative Bacterial Protein Of Unknown
Function (Duf885, Pf05960.1, ) From Arthrobacter
Aurescens Tc1, Reveals Fold Similar To That Of M32
Carboxypeptidases
Length = 562
Score = 26.9 bits (58), Expect = 7.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 128 DINGALTPTE-IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170
D+N +P + I + +L D HW+ + A G +EG+
Sbjct: 106 DLNNIASPAQDIRAIFDLXPTDTVEHWEHIAGRAANVPGAIEGY 149
>pdb|1IDQ|A Chain A, Crystal Structure Of Native Vanadium-Containing
Chloroperoxidase From Curvularia Inaequalis
pdb|1VNC|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis
pdb|1VNI|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Recombinant Holo-Chloroperoxidase
pdb|1VNS|A Chain A, Recombinant Apo-chloroperoxidase From Curvularia
Inaequalis
Length = 609
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNI-KTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86
GKTT E P L N +T Y +GG + + S R+ ++ G
Sbjct: 227 GKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQG 286
Query: 87 LVWVVDSSDL 96
L W D S+L
Sbjct: 287 LYWAYDGSNL 296
>pdb|1IDU|A Chain A, Crystal Structure Of The Peroxide Form Of The Vanadium-
Containing Chloroperoxidase From Curvularia Inaequalis
Length = 609
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNI-KTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86
GKTT E P L N +T Y +GG + + S R+ ++ G
Sbjct: 227 GKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQG 286
Query: 87 LVWVVDSSDL 96
L W D S+L
Sbjct: 287 LYWAYDGSNL 296
>pdb|1VNG|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H404a
Length = 609
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNI-KTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86
GKTT E P L N +T Y +GG + + S R+ ++ G
Sbjct: 227 GKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQG 286
Query: 87 LVWVVDSSDL 96
L W D S+L
Sbjct: 287 LYWAYDGSNL 296
>pdb|1VNH|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H496a
Length = 609
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNI-KTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86
GKTT E P L N +T Y +GG + + S R+ ++ G
Sbjct: 227 GKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQG 286
Query: 87 LVWVVDSSDL 96
L W D S+L
Sbjct: 287 LYWAYDGSNL 296
>pdb|3BB0|A Chain A, Crystal Structure Of A Trapped Phosphate-Intermediate In
Vanadium Apochloroperoxidase Catalyzing A
Dephosphorylation Reaction
Length = 609
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNI-KTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86
GKTT E P L N +T Y +GG + + S R+ ++ G
Sbjct: 227 GKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQG 286
Query: 87 LVWVVDSSDL 96
L W D S+L
Sbjct: 287 LYWAYDGSNL 296
>pdb|1VNF|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant R360a
Length = 609
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 28 GKTTIVLKINGEDTSVISPTLGFNI-KTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86
GKTT E P L N +T Y +GG + + S R+ ++ G
Sbjct: 227 GKTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQG 286
Query: 87 LVWVVDSSDL 96
L W D S+L
Sbjct: 287 LYWAYDGSNL 296
>pdb|3GVD|A Chain A, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|B Chain B, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|C Chain C, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|D Chain D, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|E Chain E, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|F Chain F, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|G Chain G, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|H Chain H, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|I Chain I, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|J Chain J, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|K Chain K, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|L Chain L, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
Length = 276
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 88 VWVVDSSDLRRLDDCKMELDN-----LLKEERLSGASLLILANK 126
VW S+ R L +C+ L + LLK E L A ILANK
Sbjct: 12 VWSNIKSEARALAECEPMLASFFHATLLKHENLGSALSYILANK 55
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 12/164 (7%)
Query: 20 LMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIKTVTYQ----KYTLNIWDVGGQRTIR 74
+++G GK+ ++ + + ++ S T+G T + Q IWD GQ R
Sbjct: 9 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR 68
Query: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-AL 133
Y+ G + V D + ++ + L L++ S ++++ NK D+
Sbjct: 69 RITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHLRA 127
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
PT+ A+ A + + + SA + E F ++ +I
Sbjct: 128 VPTDEAR-----AFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVISPTLG------FNIKTVTYQK----------YTLNI 64
+VG N GK+T++ + G S+ISP G +K + + Y
Sbjct: 14 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK 73
Query: 65 WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD 95
DV G + + E+ D +++++D+++
Sbjct: 74 SDVLGHSMV-EIAKQSLEEADVILFMIDATE 103
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 21 MVGLDNSGKTTIVLKINGEDTSVISPTLG------FNIKTVTYQK----------YTLNI 64
+VG N GK+T++ + G S+ISP G +K + + Y
Sbjct: 15 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK 74
Query: 65 WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD 95
DV G + + E+ D +++++D+++
Sbjct: 75 SDVLGHSMV-EIAKQSLEEADVILFMIDATE 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,091,493
Number of Sequences: 62578
Number of extensions: 197552
Number of successful extensions: 799
Number of sequences better than 100.0: 234
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 236
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)